CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 339

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N339L339LsynTtgCtg399135500.88950129288-29290
N339L339LsynttGttA39914400.11024829288-29290
N339L339LsynTtGCtT399110.00025056429288-29290
N339L339FnonsynttGttT3753580.95466729288-29290
N339L339FnonsynttGttC375170.045333329288-29290
N339L339VnonsynTtgGtg3636129288-29290
N339L339deldelTTG---3636129288-29290
N339L339del1delttGtt-12100.83333329288-29290
N339L339del1delTtg-tg1220.16666729288-29290
N339L339MnonsynTtgAtg88129288-29290
N339L339WnonsyntTgtGg77129288-29290
N339L339SnonsyntTgtCg44129288-29290
N339L339del2delTTg--g22129288-29290
N339L339KnonsynTTgAAg11129288-29290
N339L339GnonsynTTgGGg11129288-29290

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N339L339LTtgCtg35503991All0.000679
N339L339LttGttA4403991All0.000084
N339L339LTtGCtT13991All0
N339L339LTtgCtg31713214AY.40.004935
N339L339LttGttA433214AY.40.000067
N339L339FttGttT358375All0.000068
N339L339FttGttC17375All0.000003
N339L339LTtgCtg103180B.1.1.70.000092
N339L339LttGttA77180B.1.1.70.000069
N339L339LTtgCtg6487B.1.617.20.000241
N339L339LttGttA2387B.1.617.20.000087
N339L339LttGttA3465AY.390.00084
N339L339LTtgCtg3165AY.390.000766
N339L339LttGttA5353B.1.4440.84127
N339L339FttGttT4647AY.40.000072
N339L339FttGttC147AY.40.000002
N339L339LttGttA3443AY.430.000151
N339L339LTtgCtg943AY.430.00004
N339L339FttGttT4242AY.140.003697
N339L339FttGttT4041B.1.1.70.000036
N339L339FttGttC141B.1.1.70.000001
N339L339VTtgGtg3636All0.000007
N339L339delTTG---3636All0.000007
N339L339LttGttA3131AY.1030.000192
N339L339LTtgCtg2228B.1.20.000194
N339L339LttGttA628B.1.20.000053
N339L339LTtgCtg2323AY.950.017504
N339L339FttGttT2222AY.390.000544
N339L339FttGttT2020AY.440.000122
N339L339LttGttA1919AY.70.003724
N339L339LTtgCtg1717AY.540.001621
N339L339LttGttA816AY.1020.000212
N339L339LTtgCtg816AY.1020.000212
N339L339FttGttT1616AY.120.10.005136
N339L339LttGttA1414B.1.5170.005978
N339L339VTtgGtg1313B.1.1.2220.002652
N339L339FttGttT1313B.1.2340.001715
N339L339del1ttGtt-1012All0.000002
N339L339del1Ttg-tg212All0
N339L339FttGttT1212AY.1200.000446
N339L339FttGttT612AY.290.000095
N339L339FttGttC612AY.290.000095
N339L339LTtgCtg1111AY.60.000452
N339L339LttGttA1010B.1.177.820.004773
N339L339FttGttT1010B.1.3510.000297
N339L339VTtgGtg99AY.230.000628
N339L339FttGttT99AY.430.00004
N339L339FttGttT99B.1.10.000163
N339L339LttGttA59B.1.10.000091
N339L339LTtgCtg49B.1.10.000073
N339L339FttGttT99B.1.617.20.000034
N339L339MTtgAtg88All0.000002
N339L339FttGttT78AY.1030.000043
N339L339FttGttC18AY.1030.000006
N339L339LTtgCtg88B.1.2360.016427
N339L339LTtgCtg88P.10.000126
N339L339WtTgtGg77All0.000001
N339L339LTtgCtg77AY.4.50.000752
N339L339LTtgCtg57AY.440.00003
N339L339LttGttA27AY.440.000012
N339L339FttGttT77AY.50.000145
N339L339FttGttT77B.1.1.280.002179
N339L339FttGttT77B.1.9.50.039773
N339L339LttGttA66AY.1200.000223
N339L339FttGttT56AY.250.00003
N339L339FttGttC16AY.250.000006
N339L339LttGttA66B.1.1.1150.053571
N339L339LTtgCtg66B.1.1.5190.000238
N339L339LTtgCtg36B.1.5260.000071
N339L339LttGttA36B.1.5260.000071
N339L339LttGttA66B.1.6190.005226
N339L339LttGttA55AY.1000.00023
N339L339LttGttA45AY.200.000155
N339L339LTtgCtg15AY.200.000039
N339L339FttGttT55AY.270.000324
N339L339LTtgCtg55AY.290.000079
N339L339LTtgCtg55AY.420.000201
N339L339delTTG---55AY.430.000022
N339L339LttGttA55AY.7.10.000564
N339L339LTtgCtg35B.10.000027
N339L339LttGttA25B.10.000018
N339L339delTTG---55B.1.1.70.000004
N339L339FttGttT55B.1.20.000044
N339L339WtTgtGg55B.1.20.000044
N339L339MTtgAtg55B.1.258.140.004902
N339L339FttGttT55B.1.351.50.002998
N339L339LttGttA45R.10.00036
N339L339LTtgCtg15R.10.00009
N339L339StTgtCg44All0.000001
N339L339LTtgCtg34AY.230.000209
N339L339LttGttA14AY.230.00007
N339L339FttGttT44B.10.000037
N339L339FttGttT34B.1.1770.00004
N339L339LTtgCtg34B.1.1770.00004
N339L339LttGttA14B.1.1770.000013
N339L339FttGttC14B.1.1770.000013
N339L339LTtgCtg44C.270.074074
N339L339LTtgCtg24C.370.000232
N339L339LttGttA24C.370.000232
N339L339LTtgCtg44Q.80.00066
N339L339delTTG---33AY.250.000018
N339L339LttGttA33AY.250.000018
N339L339VTtgGtg33AY.40.000005
N339L339LTtgCtg23AY.50.000041
N339L339LttGttA13AY.50.000021
N339L339FttGttT33B.1.1.2220.000612
N339L339LTtgCtg33B.1.1120.015544
N339L339del1ttGtt-220.111111
N339L339delTTG---220.111111
N339L339del2TTg--g22All0
N339L339FttGttT22AY.1020.000053
N339L339LTtgCtg22AY.1050.001286
N339L339FttGttT22AY.1190.000071
N339L339FttGttT22AY.380.000999
N339L339del1ttGtt-22AY.440.000012
N339L339LttGttA22AZ.50.007018
N339L339VTtgGtg22B.10.000018
N339L339LttGttA22B.1.1190.021053
N339L339FttGttT22B.1.160.250.022222
N339L339LttGttA22B.1.3960.001411
N339L339LttGttA22B.1.4290.000047
N339L339LTtgCtg22B.1.5250.000226
N339L339delTTG---22B.1.617.20.000008
N339L339FttGttT22B.1.6230.001073
N339L339LttGttA22C.360.001821
N339L339KTTgAAg11All0
N339L339GTTgGGg11All0
N339L339FttGttT11AY.1000.000046
N339L339VTtgGtg11AY.1000.000046
N339L339delTTG---11AY.1030.000006
N339L339FttGttT11AY.1170.000085
N339L339LTtgCtg11AY.1180.000063
N339L339del1ttGtt-11AY.120.10.000321
N339L339LttGttA11AY.120.10.000321
N339L339LTtgCtg11AY.140.000088
N339L339FttGttT11AY.190.00114
N339L339FttGttT11AY.200.000039
N339L339FttGttT11AY.230.00007
N339L339LttGttA11AY.240.000431
N339L339del2TTg--g11AY.250.000006
N339L339WtTgtGg11AY.250.000006
N339L339KTTgAAg11AY.250.000006
N339L339del1ttGtt-11AY.260.000028
N339L339VTtgGtg11AY.270.000065
N339L339LTtgCtg11AY.270.000065
N339L339FttGttT11AY.30.00001
N339L339delTTG---11AY.30.00001
N339L339LttGttA11AY.320.000532
N339L339LttGttA11AY.340.000097
N339L339LTtgCtg11AY.34.10.00051
N339L339LTtgCtg11AY.360.000148
N339L339FttGttT11AY.39.10.00004
N339L339MTtgAtg11AY.40.000002
N339L339FttGttT11AY.4.20.000022
N339L339VTtgGtg11AY.4.20.000022
N339L339FttGttT11AY.4.2.10.000149
N339L339FttGttT11AY.420.00004
N339L339delTTG---11AY.440.000006
N339L339VTtgGtg11AY.450.000122
N339L339LttGttA11AY.460.000104
N339L339FttGttT11AY.46.20.000635
N339L339LTtgCtg11AY.470.000031
N339L339VTtgGtg11AY.50.000021
N339L339VTtgGtg11AY.5.30.000337
N339L339FttGttC11AY.530.000288
N339L339FttGttC11AY.590.00053
N339L339FttGttT11AY.60.000041
N339L339FttGttT11AY.610.000105
N339L339VTtgGtg11AY.640.000595
N339L339FttGttT11AY.650.000533
N339L339FttGttC11AY.660.00107
N339L339delTTG---11AY.670.000464
N339L339LTtgCtg11AY.670.000464
N339L339VTtgGtg11AY.680.000274
N339L339FttGttT11AY.7.10.000113
N339L339FttGttT11AY.720.001361
N339L339del1ttGtt-11AY.9.20.000037
N339L339LttGttA11AY.9.20.000037
N339L339LTtgCtg11AY.980.000079
N339L339LttGttA11AY.98.10.000048
N339L339delTTG---11AY.990.001049
N339L339LttGttA11AY.99.20.000092
N339L339del1ttGtt-11B0.000128
N339L339delTTG---11B.10.000009
N339L339WtTgtGg11B.10.000009
N339L339del1Ttg-tg11B.10.000009
N339L339StTgtCg11B.10.000009
N339L339StTgtCg11B.1.10.000018
N339L339MTtgAtg11B.1.10.000018
N339L339delTTG---11B.1.10.000018
N339L339delTTG---11B.1.1.1390.022727
N339L339LttGttA11B.1.1.1760.000439
N339L339LttGttA11B.1.1.1940.00495
N339L339LttGttA11B.1.1.2070.001182
N339L339FttGttT11B.1.1.2160.00089
N339L339LTtGCtT11B.1.1.270.00565
N339L339FttGttT11B.1.1.3060.000438
N339L339LTtgCtg11B.1.1.3060.000438
N339L339LttGttA11B.1.1.3180.000302
N339L339LttGttA11B.1.1.3720.000689
N339L339delTTG---11B.1.1.4200.001006
N339L339delTTG---11B.1.1.5190.00004
N339L339del1Ttg-tg11B.1.1.70.000001
N339L339FttGttC11B.1.1600.000031
N339L339FttGttT11B.1.1700.00431
N339L339delTTG---11B.1.177.630.002703
N339L339FttGttT11B.1.177.810.000189
N339L339delTTG---11B.1.177.830.001481
N339L339del1ttGtt-11B.1.20.000009
N339L339StTgtCg11B.1.2340.000132
N339L339LttGttA11B.1.2430.00007
N339L339FttGttT11B.1.2580.000067
N339L339LttGttA11B.1.2580.000067
N339L339FttGttT11B.1.3460.001311
N339L339FttGttT11B.1.3490.000715
N339L339LTtgCtg11B.1.3510.00003
N339L339LttGttA11B.1.351.50.0006
N339L339FttGttT11B.1.36.290.000517
N339L339LttGttA11B.1.36.390.002217
N339L339del1ttGtt-11B.1.3770.004566
N339L339delTTG---11B.1.4150.014286
N339L339LttGttA11B.1.4270.00005
N339L339FttGttT11B.1.4270.00005
N339L339LttGttA11B.1.428.30.012821
N339L339delTTG---11B.1.4290.000024
N339L339LttGttA11B.1.466.20.000391
N339L339FttGttT11B.1.4700.001404
N339L339delTTG---11B.1.5250.000113
N339L339FttGttT11B.1.5260.000024
N339L339delTTG---11B.1.5610.000397
N339L339FttGttT11B.1.575.10.002439
N339L339LttGttA11B.1.5760.000907
N339L339FttGttT11B.1.5950.000261
N339L339GTTgGGg11B.1.6090.000479
N339L339FttGttT11B.1.6120.002653
N339L339FttGttC11B.1.617.10.000129
N339L339VTtgGtg11B.1.617.20.000004
N339L339FttGttT11B.1.6210.000089
N339L339del2TTg--g11B.1.6210.000089
N339L339delTTG---11B.1.6300.005236
N339L339FttGttC11B.400.000364
N339L339LttGttA11B.6.60.000889
N339L339FttGttT11C.370.000116
N339L339FttGttT11C.40.01
N339L339FttGttT11D.20.000075
N339L339FttGttT11K.30.006173
N339L339FttGttT11L.30.003546
N339L339delTTG---11P.1.10.000318
N339L339StTgtCg11P.20.000187
N339L339MTtgAtg11P.30.001595
N339L339delTTG---11Q.20.000613