CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 337 | I337I | syn | atC | atT | 8509 | 8241 | 0.968504 | 29282-29284 | |
N | 337 | I337I | syn | atC | atA | 8509 | 268 | 0.0314961 | 29282-29284 | |
N | 337 | I337V | nonsyn | Atc | Gtc | 390 | 389 | 0.997436 | 29282-29284 | |
N | 337 | I337V | nonsyn | AtC | GtA | 390 | 1 | 0.0025641 | 29282-29284 | |
N | 337 | I337F | nonsyn | Atc | Ttc | 347 | 347 | 1 | 29282-29284 | |
N | 337 | I337T | nonsyn | aTc | aCc | 53 | 51 | 0.962264 | 29282-29284 | |
N | 337 | I337T | nonsyn | aTC | aCT | 53 | 1 | 0.0188679 | 29282-29284 | |
N | 337 | I337T | nonsyn | aTC | aCG | 53 | 1 | 0.0188679 | 29282-29284 | |
N | 337 | I337del | del | ATC | --- | 41 | 41 | 1 | 29282-29284 | |
N | 337 | I337M | nonsyn | atC | atG | 29 | 29 | 1 | 29282-29284 | |
N | 337 | I337L | nonsyn | Atc | Ctc | 24 | 21 | 0.875 | 29282-29284 | |
N | 337 | I337L | nonsyn | AtC | TtG | 24 | 2 | 0.0833333 | 29282-29284 | |
N | 337 | I337L | nonsyn | AtC | TtA | 24 | 1 | 0.0416667 | 29282-29284 | |
N | 337 | I337S | nonsyn | aTc | aGc | 8 | 7 | 0.875 | 29282-29284 | |
N | 337 | I337S | nonsyn | ATC | TCG | 8 | 1 | 0.125 | 29282-29284 | |
N | 337 | I337del1 | del | aTC | aC- | 3 | 2 | 0.666667 | 29282-29284 | |
N | 337 | I337del1 | del | aTc | a-c | 3 | 1 | 0.333333 | 29282-29284 | |
N | 337 | I337N | nonsyn | aTc | aAc | 2 | 2 | 1 | 29282-29284 | |
N | 337 | I337G | nonsyn | ATc | GGc | 1 | 1 | 1 | 29282-29284 | |
N | 337 | I337X | nonsyn | ATC | TGA | 1 | 1 | 1 | 29282-29284 | |
N | 337 | I337W | nonsyn | ATC | TGG | 1 | 1 | 1 | 29282-29284 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 337 | I337I | atC | atT | 8241 | 8509 | All | 0.001576 |
N | 337 | I337I | atC | atA | 268 | 8509 | All | 0.000051 |
N | 337 | I337I | atC | atT | 3486 | 3516 | B.1.1.7 | 0.003121 |
N | 337 | I337I | atC | atA | 30 | 3516 | B.1.1.7 | 0.000027 |
N | 337 | I337I | atC | atT | 391 | 403 | B.1.617.2 | 0.001472 |
N | 337 | I337I | atC | atA | 12 | 403 | B.1.617.2 | 0.000045 |
N | 337 | I337V | Atc | Gtc | 389 | 390 | All | 0.000074 |
N | 337 | I337V | AtC | GtA | 1 | 390 | All | 0 |
N | 337 | I337F | Atc | Ttc | 347 | 347 | All | 0.000066 |
N | 337 | I337I | atC | atT | 274 | 308 | AY.4 | 0.000426 |
N | 337 | I337I | atC | atA | 34 | 308 | AY.4 | 0.000053 |
N | 337 | I337I | atC | atT | 289 | 298 | AY.103 | 0.001794 |
N | 337 | I337I | atC | atA | 9 | 298 | AY.103 | 0.000056 |
N | 337 | I337I | atC | atT | 280 | 280 | B.1.177.17 | 0.229885 |
N | 337 | I337I | atC | atT | 155 | 229 | AY.43 | 0.000687 |
N | 337 | I337I | atC | atA | 74 | 229 | AY.43 | 0.000328 |
N | 337 | I337I | atC | atT | 198 | 198 | B.1.88.1 | 0.951923 |
N | 337 | I337I | atC | atT | 154 | 157 | B.1.2 | 0.001356 |
N | 337 | I337I | atC | atA | 3 | 157 | B.1.2 | 0.000026 |
N | 337 | I337I | atC | atT | 152 | 152 | AY.6 | 0.006252 |
N | 337 | I337I | atC | atT | 118 | 120 | AY.102 | 0.003129 |
N | 337 | I337I | atC | atA | 2 | 120 | AY.102 | 0.000053 |
N | 337 | I337I | atC | atT | 116 | 116 | B.1.427 | 0.005858 |
N | 337 | I337I | atC | atT | 107 | 110 | AY.25 | 0.000644 |
N | 337 | I337I | atC | atA | 3 | 110 | AY.25 | 0.000018 |
N | 337 | I337I | atC | atT | 107 | 107 | B.1.1.378 | 0.781022 |
N | 337 | I337I | atC | atT | 98 | 98 | B.1.265 | 0.124524 |
N | 337 | I337I | atC | atT | 89 | 91 | B.1 | 0.000815 |
N | 337 | I337I | atC | atA | 2 | 91 | B.1 | 0.000018 |
N | 337 | I337I | atC | atT | 66 | 83 | AY.44 | 0.000402 |
N | 337 | I337I | atC | atA | 17 | 83 | AY.44 | 0.000103 |
N | 337 | I337I | atC | atT | 80 | 80 | AY.120 | 0.002974 |
N | 337 | I337I | atC | atT | 76 | 78 | B.1.1 | 0.001379 |
N | 337 | I337I | atC | atA | 2 | 78 | B.1.1 | 0.000036 |
N | 337 | I337I | atC | atT | 75 | 75 | B.1.526 | 0.001763 |
N | 337 | I337I | atC | atT | 72 | 74 | B.1.177 | 0.000948 |
N | 337 | I337I | atC | atA | 2 | 74 | B.1.177 | 0.000026 |
N | 337 | I337I | atC | atT | 74 | 74 | P.1 | 0.001166 |
N | 337 | I337F | Atc | Ttc | 71 | 71 | B.1.1.7 | 0.000064 |
N | 337 | I337I | atC | atT | 58 | 58 | B.1.429 | 0.001365 |
N | 337 | I337I | atC | atT | 55 | 55 | AZ.2 | 0.045156 |
N | 337 | I337V | Atc | Gtc | 55 | 55 | B.1.243 | 0.003827 |
N | 337 | I337T | aTc | aCc | 51 | 53 | All | 0.00001 |
N | 337 | I337T | aTC | aCT | 1 | 53 | All | 0 |
N | 337 | I337T | aTC | aCG | 1 | 53 | All | 0 |
N | 337 | I337I | atC | atT | 51 | 51 | B.1.625 | 0.12 |
N | 337 | I337I | atC | atT | 51 | 51 | Q.3 | 0.007397 |
N | 337 | I337I | atC | atT | 41 | 47 | AY.3 | 0.000408 |
N | 337 | I337I | atC | atA | 6 | 47 | AY.3 | 0.00006 |
N | 337 | I337I | atC | atT | 36 | 46 | AY.29 | 0.000568 |
N | 337 | I337I | atC | atA | 10 | 46 | AY.29 | 0.000158 |
N | 337 | I337V | Atc | Gtc | 45 | 45 | B.1.1.7 | 0.00004 |
N | 337 | I337V | Atc | Gtc | 44 | 44 | AY.4 | 0.000068 |
N | 337 | I337del | ATC | --- | 41 | 41 | All | 0.000008 |
N | 337 | I337I | atC | atT | 41 | 41 | AY.53 | 0.011788 |
N | 337 | I337I | atC | atT | 37 | 38 | B.1.1.519 | 0.001469 |
N | 337 | I337I | atC | atA | 1 | 38 | B.1.1.519 | 0.00004 |
N | 337 | I337I | atC | atT | 37 | 37 | AY.98 | 0.002923 |
N | 337 | I337I | atC | atT | 37 | 37 | B.1.1.228 | 0.112805 |
N | 337 | I337V | Atc | Gtc | 37 | 37 | B.1.1.519 | 0.001469 |
N | 337 | I337I | atC | atT | 37 | 37 | C.16 | 0.039236 |
N | 337 | I337I | atC | atT | 37 | 37 | Q.8 | 0.006102 |
N | 337 | I337V | Atc | Gtc | 36 | 36 | B.1.617.2 | 0.000136 |
N | 337 | I337F | Atc | Ttc | 34 | 34 | AY.103 | 0.000211 |
N | 337 | I337F | Atc | Ttc | 33 | 33 | AY.4 | 0.000051 |
N | 337 | I337V | Atc | Gtc | 33 | 33 | AY.44 | 0.000201 |
N | 337 | I337I | atC | atT | 31 | 33 | B.1.621 | 0.002744 |
N | 337 | I337I | atC | atA | 2 | 33 | B.1.621 | 0.000177 |
N | 337 | I337I | atC | atT | 32 | 32 | AY.27 | 0.002071 |
N | 337 | I337I | atC | atT | 30 | 31 | B.1.234 | 0.003958 |
N | 337 | I337I | atC | atA | 1 | 31 | B.1.234 | 0.000132 |
N | 337 | I337F | Atc | Ttc | 30 | 30 | AY.119 | 0.001059 |
N | 337 | I337M | atC | atG | 29 | 29 | All | 0.000006 |
N | 337 | I337F | Atc | Ttc | 29 | 29 | AY.43 | 0.000128 |
N | 337 | I337I | atC | atT | 29 | 29 | AY.75.1 | 0.005229 |
N | 337 | I337I | atC | atT | 28 | 29 | AY.9.2 | 0.001028 |
N | 337 | I337I | atC | atA | 1 | 29 | AY.9.2 | 0.000037 |
N | 337 | I337V | Atc | Gtc | 28 | 28 | AY.102 | 0.000742 |
N | 337 | I337I | atC | atT | 26 | 26 | B.1.221 | 0.001847 |
N | 337 | I337I | atC | atT | 24 | 25 | AY.26 | 0.000679 |
N | 337 | I337I | atC | atA | 1 | 25 | AY.26 | 0.000028 |
N | 337 | I337I | atC | atT | 25 | 25 | AY.39 | 0.000618 |
N | 337 | I337I | atC | atT | 24 | 25 | AY.9.1 | 0.002009 |
N | 337 | I337I | atC | atA | 1 | 25 | AY.9.1 | 0.000084 |
N | 337 | I337I | atC | atT | 25 | 25 | B.1.560 | 0.115741 |
N | 337 | I337L | Atc | Ctc | 21 | 24 | All | 0.000004 |
N | 337 | I337L | AtC | TtG | 2 | 24 | All | 0 |
N | 337 | I337L | AtC | TtA | 1 | 24 | All | 0 |
N | 337 | I337I | atC | atT | 23 | 24 | AY.4.2 | 0.000499 |
N | 337 | I337I | atC | atA | 1 | 24 | AY.4.2 | 0.000022 |
N | 337 | I337I | atC | atT | 24 | 24 | AY.5.4 | 0.006641 |
N | 337 | I337I | atC | atT | 23 | 23 | B.1.1.226 | 0.133721 |
N | 337 | I337I | atC | atT | 23 | 23 | B.1.517 | 0.009821 |
N | 337 | I337I | atC | atT | 22 | 22 | B.1.177.33 | 0.036184 |
N | 337 | I337I | atC | atT | 20 | 21 | B.1.351 | 0.000595 |
N | 337 | I337I | atC | atA | 1 | 21 | B.1.351 | 0.00003 |
N | 337 | I337I | atC | atT | 20 | 20 | AY.5 | 0.000413 |
N | 337 | I337I | atC | atT | 19 | 19 | AY.42 | 0.000764 |
N | 337 | I337I | atC | atT | 18 | 19 | AY.57 | 0.011811 |
N | 337 | I337I | atC | atA | 1 | 19 | AY.57 | 0.000656 |
N | 337 | I337I | atC | atT | 19 | 19 | B.1.160 | 0.000593 |
N | 337 | I337I | atC | atT | 19 | 19 | B.1.400 | 0.008151 |
N | 337 | I337I | atC | atT | 14 | 17 | AY.20 | 0.000544 |
N | 337 | I337I | atC | atA | 3 | 17 | AY.20 | 0.000117 |
N | 337 | I337F | Atc | Ttc | 17 | 17 | B.1.617.2 | 0.000064 |
N | 337 | I337I | atC | atT | 16 | 16 | AY.117 | 0.001352 |
N | 337 | I337I | atC | atA | 10 | 16 | AY.39.1 | 0.000396 |
N | 337 | I337I | atC | atT | 6 | 16 | AY.39.1 | 0.000238 |
N | 337 | I337F | Atc | Ttc | 15 | 15 | B.1 | 0.000137 |
N | 337 | I337I | atC | atT | 15 | 15 | B.1.1.434 | 0.005228 |
N | 337 | I337I | atC | atT | 15 | 15 | B.1.582 | 0.00736 |
N | 337 | I337F | Atc | Ttc | 14 | 14 | AY.44 | 0.000085 |
N | 337 | I337I | atC | atT | 14 | 14 | AY.47 | 0.000435 |
N | 337 | I337I | atC | atT | 13 | 13 | AY.46.4 | 0.002139 |
N | 337 | I337I | atC | atT | 13 | 13 | AY.87 | 0.010824 |
N | 337 | I337I | atC | atT | 12 | 13 | AY.93 | 0.003277 |
N | 337 | I337I | atC | atA | 1 | 13 | AY.93 | 0.000273 |
N | 337 | I337I | atC | atT | 13 | 13 | B.1.1.513 | 0.160494 |
N | 337 | I337I | atC | atT | 13 | 13 | R.1 | 0.00117 |
N | 337 | I337V | Atc | Gtc | 12 | 12 | AY.29 | 0.000189 |
N | 337 | I337I | atC | atT | 11 | 12 | P.1.15 | 0.002556 |
N | 337 | I337I | atC | atA | 1 | 12 | P.1.15 | 0.000232 |
N | 337 | I337I | atC | atT | 12 | 12 | Q.1 | 0.001516 |
N | 337 | I337I | atC | atT | 11 | 11 | AY.4.2.1 | 0.001639 |
N | 337 | I337T | aTc | aCc | 11 | 11 | AY.46.6 | 0.000794 |
N | 337 | I337I | atC | atT | 11 | 11 | B.1.1.134 | 0.125 |
N | 337 | I337I | atC | atT | 11 | 11 | B.1.1.214 | 0.00061 |
N | 337 | I337I | atC | atT | 11 | 11 | C.36 | 0.010018 |
N | 337 | I337I | atC | atT | 11 | 11 | Z.1 | 0.031792 |
N | 337 | I337I | atC | atT | 10 | 10 | AY.100 | 0.00046 |
N | 337 | I337I | atC | atT | 9 | 10 | AY.4.5 | 0.000967 |
N | 337 | I337I | atC | atA | 1 | 10 | AY.4.5 | 0.000107 |
N | 337 | I337F | Atc | Ttc | 10 | 10 | B.1.1.269 | 0.013532 |
N | 337 | I337I | atC | atT | 10 | 10 | B.1.1.37 | 0.001929 |
N | 337 | I337I | atC | atT | 10 | 10 | B.1.415.1 | 0.075758 |
N | 337 | I337I | atC | atT | 10 | 10 | B.1.637 | 0.000731 |
N | 337 | I337V | Atc | Gtc | 9 | 9 | AY.103 | 0.000056 |
N | 337 | I337I | atC | atT | 8 | 9 | AY.46 | 0.000833 |
N | 337 | I337I | atC | atA | 1 | 9 | AY.46 | 0.000104 |
N | 337 | I337I | atC | atT | 7 | 9 | AY.61 | 0.000733 |
N | 337 | I337I | atC | atA | 2 | 9 | AY.61 | 0.00021 |
N | 337 | I337I | atC | atT | 9 | 9 | B.1.1.326 | 0.015845 |
N | 337 | I337I | atC | atT | 9 | 9 | B.1.243 | 0.000626 |
N | 337 | I337I | atC | atT | 9 | 9 | B.1.596 | 0.000784 |
N | 337 | I337S | aTc | aGc | 7 | 8 | All | 0.000001 |
N | 337 | I337S | ATC | TCG | 1 | 8 | All | 0 |
N | 337 | I337I | atC | atT | 8 | 8 | AY.98.1 | 0.000387 |
N | 337 | I337I | atC | atA | 5 | 8 | B.1.1.1 | 0.001633 |
N | 337 | I337I | atC | atT | 3 | 8 | B.1.1.1 | 0.00098 |
N | 337 | I337L | Atc | Ctc | 8 | 8 | B.1.1.7 | 0.000007 |
N | 337 | I337F | Atc | Ttc | 8 | 8 | B.1.177 | 0.000105 |
N | 337 | I337I | atC | atT | 8 | 8 | B.1.36 | 0.001167 |
N | 337 | I337M | atC | atG | 8 | 8 | B.1.617.2 | 0.00003 |
N | 337 | I337I | atC | atT | 8 | 8 | C.37 | 0.000929 |
N | 337 | I337I | atC | atT | 7 | 7 | AY.111 | 0.001282 |
N | 337 | I337V | Atc | Gtc | 7 | 7 | AY.25 | 0.000042 |
N | 337 | I337M | atC | atG | 7 | 7 | AY.3 | 0.00007 |
N | 337 | I337I | atC | atT | 7 | 7 | AY.46.6 | 0.000505 |
N | 337 | I337I | atC | atT | 7 | 7 | AY.70 | 0.00146 |
N | 337 | I337I | atC | atT | 7 | 7 | B.1.258 | 0.000466 |
N | 337 | I337I | atC | atT | 7 | 7 | P.1.14 | 0.000335 |
N | 337 | I337F | Atc | Ttc | 6 | 6 | AY.120 | 0.000223 |
N | 337 | I337I | atC | atT | 6 | 6 | AY.46.5 | 0.00119 |
N | 337 | I337T | aTc | aCc | 6 | 6 | B.1.1.7 | 0.000005 |
N | 337 | I337del | ATC | --- | 6 | 6 | B.1.1.7 | 0.000005 |
N | 337 | I337V | Atc | Gtc | 6 | 6 | B.1.2 | 0.000053 |
N | 337 | I337I | atC | atT | 6 | 6 | B.1.240 | 0.001293 |
N | 337 | I337I | atC | atT | 6 | 6 | B.1.525 | 0.000679 |
N | 337 | I337I | atC | atT | 6 | 6 | B.1.621.1 | 0.003035 |
N | 337 | I337I | atC | atT | 6 | 6 | D.2 | 0.00045 |
N | 337 | I337I | atC | atT | 6 | 6 | P.2 | 0.00112 |
N | 337 | I337I | atC | atT | 5 | 5 | A.23.1 | 0.003521 |
N | 337 | I337F | Atc | Ttc | 5 | 5 | AY.100 | 0.00023 |
N | 337 | I337F | Atc | Ttc | 5 | 5 | AY.102 | 0.000133 |
N | 337 | I337I | atC | atT | 5 | 5 | AY.116 | 0.001434 |
N | 337 | I337I | atC | atT | 3 | 5 | AY.121 | 0.000406 |
N | 337 | I337I | atC | atA | 2 | 5 | AY.121 | 0.000271 |
N | 337 | I337del | ATC | --- | 5 | 5 | AY.43 | 0.000022 |
N | 337 | I337V | Atc | Gtc | 5 | 5 | AY.43 | 0.000022 |
N | 337 | I337I | atC | atA | 3 | 5 | AY.62 | 0.001307 |
N | 337 | I337I | atC | atT | 2 | 5 | AY.62 | 0.000871 |
N | 337 | I337F | Atc | Ttc | 5 | 5 | AY.84 | 0.002187 |
N | 337 | I337I | atC | atT | 5 | 5 | B.1.1.141 | 0.01006 |
N | 337 | I337I | atC | atT | 5 | 5 | B.1.36.8 | 0.005 |
N | 337 | I337F | Atc | Ttc | 5 | 5 | P.1 | 0.000079 |
N | 337 | I337I | atC | atT | 5 | 5 | P.1.12 | 0.00242 |
N | 337 | I337L | Atc | Ctc | 4 | 4 | AY.102 | 0.000106 |
N | 337 | I337I | atC | atT | 4 | 4 | AY.113 | 0.00057 |
N | 337 | I337I | atC | atT | 4 | 4 | AY.118 | 0.000251 |
N | 337 | I337I | atC | atT | 4 | 4 | AY.14 | 0.000352 |
N | 337 | I337I | atC | atT | 4 | 4 | AY.23 | 0.000279 |
N | 337 | I337V | Atc | Gtc | 3 | 4 | AY.23 | 0.000209 |
N | 337 | I337V | AtC | GtA | 1 | 4 | AY.23 | 0.00007 |
N | 337 | I337del | ATC | --- | 4 | 4 | AY.25 | 0.000024 |
N | 337 | I337I | atC | atT | 4 | 4 | AY.34.1 | 0.00204 |
N | 337 | I337T | aTc | aCc | 4 | 4 | AY.44 | 0.000024 |
N | 337 | I337I | atC | atT | 4 | 4 | AY.45 | 0.000487 |
N | 337 | I337I | atC | atA | 3 | 4 | AY.64 | 0.001786 |
N | 337 | I337I | atC | atT | 1 | 4 | AY.64 | 0.000595 |
N | 337 | I337F | Atc | Ttc | 4 | 4 | AY.70 | 0.000834 |
N | 337 | I337V | Atc | Gtc | 4 | 4 | AY.75 | 0.000224 |
N | 337 | I337I | atC | atT | 4 | 4 | AY.99.2 | 0.000369 |
N | 337 | I337V | Atc | Gtc | 4 | 4 | B.1.1 | 0.000073 |
N | 337 | I337I | atC | atT | 4 | 4 | B.1.1.222 | 0.000816 |
N | 337 | I337I | atC | atT | 4 | 4 | B.1.1.28 | 0.001245 |
N | 337 | I337I | atC | atT | 3 | 4 | B.1.1.306 | 0.001315 |
N | 337 | I337I | atC | atA | 1 | 4 | B.1.1.306 | 0.000438 |
N | 337 | I337I | atC | atT | 4 | 4 | B.1.1.464 | 0.005891 |
N | 337 | I337I | atC | atT | 4 | 4 | B.1.111 | 0.0047 |
N | 337 | I337I | atC | atT | 4 | 4 | B.1.160.14 | 0.008475 |
N | 337 | I337I | atC | atT | 4 | 4 | B.1.324 | 0.006421 |
N | 337 | I337I | atC | atA | 4 | 4 | B.1.576 | 0.003626 |
N | 337 | I337I | atC | atT | 4 | 4 | B.1.595 | 0.001044 |
N | 337 | I337I | atC | atT | 4 | 4 | B.1.628 | 0.001409 |
N | 337 | I337I | atC | atT | 4 | 4 | P.1.2 | 0.004624 |
N | 337 | I337I | atC | atT | 4 | 4 | P.1.7 | 0.001277 |
N | 337 | I337F | Atc | Ttc | 4 | 4 | R.1 | 0.00036 |
N | 337 | I337del1 | aTC | aC- | 2 | 3 | All | 0 |
N | 337 | I337del1 | aTc | a-c | 1 | 3 | All | 0 |
N | 337 | I337I | atC | atT | 3 | 3 | AY.108 | 0.003308 |
N | 337 | I337F | Atc | Ttc | 3 | 3 | AY.110 | 0.000338 |
N | 337 | I337V | Atc | Gtc | 3 | 3 | AY.20 | 0.000117 |
N | 337 | I337M | atC | atG | 3 | 3 | AY.25 | 0.000018 |
N | 337 | I337I | atC | atT | 3 | 3 | AY.3.1 | 0.000256 |
N | 337 | I337V | Atc | Gtc | 3 | 3 | AY.33 | 0.0002 |
N | 337 | I337I | atC | atT | 3 | 3 | AY.33 | 0.0002 |
N | 337 | I337I | atC | atA | 2 | 3 | AY.34 | 0.000194 |
N | 337 | I337I | atC | atT | 1 | 3 | AY.34 | 0.000097 |
N | 337 | I337I | atC | atT | 2 | 3 | AY.36 | 0.000296 |
N | 337 | I337I | atC | atA | 1 | 3 | AY.36 | 0.000148 |
N | 337 | I337F | Atc | Ttc | 3 | 3 | AY.39 | 0.000074 |
N | 337 | I337M | atC | atG | 3 | 3 | AY.4 | 0.000005 |
N | 337 | I337T | aTc | aCc | 3 | 3 | AY.4 | 0.000005 |
N | 337 | I337F | Atc | Ttc | 3 | 3 | AY.46 | 0.000312 |
N | 337 | I337V | Atc | Gtc | 3 | 3 | AY.46 | 0.000312 |
N | 337 | I337I | atC | atT | 3 | 3 | AY.69 | 0.00056 |
N | 337 | I337I | atC | atT | 3 | 3 | AY.7 | 0.000588 |
N | 337 | I337I | atC | atT | 3 | 3 | AY.74 | 0.000347 |
N | 337 | I337I | atC | atT | 3 | 3 | AY.99 | 0.003148 |
N | 337 | I337I | atC | atT | 3 | 3 | B | 0.000383 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.1.101 | 0.03 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.1.216 | 0.002671 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.1.348 | 0.002389 |
N | 337 | I337V | Atc | Gtc | 3 | 3 | B.1.1.466 | 0.026087 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.1.50 | 0.002037 |
N | 337 | I337T | aTc | aCc | 3 | 3 | B.1.160 | 0.000094 |
N | 337 | I337F | Atc | Ttc | 3 | 3 | B.1.177.75 | 0.003122 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.177.81 | 0.000568 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.177.86 | 0.00055 |
N | 337 | I337L | Atc | Ctc | 3 | 3 | B.1.234 | 0.000396 |
N | 337 | I337F | Atc | Ttc | 3 | 3 | B.1.258 | 0.0002 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.311 | 0.000824 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.36.35 | 0.007812 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.466.2 | 0.001174 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.509 | 0.002597 |
N | 337 | I337F | Atc | Ttc | 3 | 3 | B.1.596 | 0.000261 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.603 | 0.031915 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.609 | 0.001438 |
N | 337 | I337I | atC | atT | 3 | 3 | B.1.617.1 | 0.000387 |
N | 337 | I337T | aTc | aCc | 3 | 3 | B.1.617.2 | 0.000011 |
N | 337 | I337L | AtC | TtG | 1 | 3 | B.1.617.2 | 0.000004 |
N | 337 | I337L | AtC | TtA | 1 | 3 | B.1.617.2 | 0.000004 |
N | 337 | I337L | Atc | Ctc | 1 | 3 | B.1.617.2 | 0.000004 |
N | 337 | I337V | Atc | Gtc | 3 | 3 | Q.8 | 0.000495 |
N | 337 | I337del | ATC | --- | 2 | 2 | 0.111111 | |
N | 337 | I337S | aTc | aGc | 2 | 2 | 0.111111 | |
N | 337 | I337I | atC | atT | 2 | 2 | A.2.5 | 0.000998 |
N | 337 | I337I | atC | atT | 2 | 2 | A.2.5.1 | 0.009615 |
N | 337 | I337N | aTc | aAc | 2 | 2 | All | 0 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | AY.113 | 0.000285 |
N | 337 | I337F | Atc | Ttc | 2 | 2 | AY.118 | 0.000125 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.119 | 0.000071 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.120.1 | 0.000642 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.13 | 0.000322 |
N | 337 | I337F | Atc | Ttc | 2 | 2 | AY.25 | 0.000012 |
N | 337 | I337T | aTc | aCc | 1 | 2 | AY.25 | 0.000006 |
N | 337 | I337T | aTC | aCG | 1 | 2 | AY.25 | 0.000006 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | AY.26 | 0.000057 |
N | 337 | I337T | aTc | aCc | 2 | 2 | AY.29 | 0.000032 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.30 | 0.000791 |
N | 337 | I337T | aTc | aCc | 2 | 2 | AY.39.1 | 0.000079 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.41 | 0.000588 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | AY.42 | 0.00008 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | AY.45 | 0.000243 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.46.2 | 0.001271 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.54 | 0.000191 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.55 | 0.001835 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | AY.6 | 0.000082 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | AY.61 | 0.00021 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.7.1 | 0.000225 |
N | 337 | I337I | atC | atT | 2 | 2 | AY.75 | 0.000112 |
N | 337 | I337I | atC | atT | 1 | 2 | AY.88 | 0.000884 |
N | 337 | I337I | atC | atA | 1 | 2 | AY.88 | 0.000884 |
N | 337 | I337I | atC | atT | 1 | 2 | AY.95 | 0.000761 |
N | 337 | I337I | atC | atA | 1 | 2 | AY.95 | 0.000761 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | AY.98.1 | 0.000097 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | B.1 | 0.000018 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.1.189 | 0.003026 |
N | 337 | I337I | atC | atA | 1 | 2 | B.1.1.198 | 0.001468 |
N | 337 | I337I | atC | atT | 1 | 2 | B.1.1.198 | 0.001468 |
N | 337 | I337S | aTc | aGc | 2 | 2 | B.1.1.28 | 0.000622 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.1.318 | 0.000604 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.1.33 | 0.000842 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.1.372 | 0.001377 |
N | 337 | I337F | Atc | Ttc | 2 | 2 | B.1.1.51 | 0.003436 |
N | 337 | I337F | Atc | Ttc | 2 | 2 | B.1.1.519 | 0.000079 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.1.63 | 0.000772 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.110.3 | 0.001437 |
N | 337 | I337T | aTc | aCc | 2 | 2 | B.1.177 | 0.000026 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.177.4 | 0.000422 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.177.56 | 0.001335 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.177.74 | 0.030303 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.236 | 0.004107 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.258.17 | 0.000208 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | B.1.267 | 0.037037 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.36.36 | 0.001204 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.369 | 0.00057 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.438 | 0.013072 |
N | 337 | I337V | Atc | Gtc | 2 | 2 | B.1.525 | 0.000226 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.568 | 0.002222 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.577 | 0.001375 |
N | 337 | I337del | ATC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.623 | 0.001073 |
N | 337 | I337I | atC | atT | 2 | 2 | B.1.634 | 0.006849 |
N | 337 | I337I | atC | atT | 2 | 2 | B.23 | 0.005848 |
N | 337 | I337I | atC | atT | 2 | 2 | B.3.1 | 0.003317 |
N | 337 | I337I | atC | atT | 2 | 2 | B.40 | 0.000729 |
N | 337 | I337I | atC | atA | 1 | 2 | C.35 | 0.000774 |
N | 337 | I337I | atC | atT | 1 | 2 | C.35 | 0.000774 |
N | 337 | I337I | atC | atT | 2 | 2 | N.5 | 0.003534 |
N | 337 | I337I | atC | atT | 2 | 2 | P.1.11 | 0.020408 |
N | 337 | I337I | atC | atT | 2 | 2 | Q.2 | 0.001227 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | A | 0.000387 |
N | 337 | I337I | atC | atT | 1 | 1 | A | 0.000387 |
N | 337 | I337I | atC | atA | 1 | 1 | A.2.2 | 0.001689 |
N | 337 | I337I | atC | atT | 1 | 1 | A.27 | 0.001656 |
N | 337 | I337I | atC | atT | 1 | 1 | A.3 | 0.002096 |
N | 337 | I337I | atC | atT | 1 | 1 | AD.2 | 0.000219 |
N | 337 | I337G | ATc | GGc | 1 | 1 | All | 0 |
N | 337 | I337W | ATC | TGG | 1 | 1 | All | 0 |
N | 337 | I337X | ATC | TGA | 1 | 1 | All | 0 |
N | 337 | I337I | atC | atT | 1 | 1 | AP.1 | 0.001502 |
N | 337 | I337del | ATC | --- | 1 | 1 | AY.103 | 0.000006 |
N | 337 | I337T | aTc | aCc | 1 | 1 | AY.103 | 0.000006 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.105 | 0.000643 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.106 | 0.000335 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.108 | 0.001103 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.109 | 0.00074 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.110 | 0.000113 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.111 | 0.000183 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.113 | 0.000142 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.114 | 0.000231 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.116.1 | 0.000311 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.117 | 0.000085 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.119 | 0.000035 |
N | 337 | I337T | aTc | aCc | 1 | 1 | AY.119 | 0.000035 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.120 | 0.000037 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.120.1 | 0.000321 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.14 | 0.000088 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.16 | 0.00038 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.16.1 | 0.00047 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.16.1 | 0.00047 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.17 | 0.008197 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.2 | 0.000356 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.20 | 0.000039 |
N | 337 | I337I | atC | atA | 1 | 1 | AY.22 | 0.002092 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.23 | 0.00007 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.26 | 0.000028 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.28 | 0.00189 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.29.1 | 0.000221 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.3 | 0.00001 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.3 | 0.00001 |
N | 337 | I337del | ATC | --- | 1 | 1 | AY.3 | 0.00001 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.35 | 0.000233 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.38 | 0.000499 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.39 | 0.000025 |
N | 337 | I337T | aTc | aCc | 1 | 1 | AY.39 | 0.000025 |
N | 337 | I337L | Atc | Ctc | 1 | 1 | AY.4 | 0.000002 |
N | 337 | I337S | ATC | TCG | 1 | 1 | AY.4 | 0.000002 |
N | 337 | I337del | ATC | --- | 1 | 1 | AY.4 | 0.000002 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.4.2 | 0.000022 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 337 | I337G | ATc | GGc | 1 | 1 | AY.40 | 0.000964 |
N | 337 | I337M | atC | atG | 1 | 1 | AY.42 | 0.00004 |
N | 337 | I337M | atC | atG | 1 | 1 | AY.43 | 0.000004 |
N | 337 | I337del | ATC | --- | 1 | 1 | AY.44 | 0.000006 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.46.5 | 0.000198 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.48 | 0.000465 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.49 | 0.003195 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.5.3 | 0.000337 |
N | 337 | I337del | ATC | --- | 1 | 1 | AY.5.3 | 0.000337 |
N | 337 | I337T | aTc | aCc | 1 | 1 | AY.55 | 0.000917 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.55 | 0.000917 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.57 | 0.000656 |
N | 337 | I337S | aTc | aGc | 1 | 1 | AY.59 | 0.00053 |
N | 337 | I337del | ATC | --- | 1 | 1 | AY.59 | 0.00053 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.60 | 0.000938 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.62 | 0.000436 |
N | 337 | I337del | ATC | --- | 1 | 1 | AY.67 | 0.000464 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.68 | 0.000274 |
N | 337 | I337T | aTc | aCc | 1 | 1 | AY.7.1 | 0.000113 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.7.2 | 0.000559 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.75.1 | 0.00018 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.77 | 0.001127 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.80 | 0.001129 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | AY.80 | 0.001129 |
N | 337 | I337N | aTc | aAc | 1 | 1 | AY.84 | 0.000437 |
N | 337 | I337I | atC | atA | 1 | 1 | AY.84 | 0.000437 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.85 | 0.000427 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.9 | 0.000068 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | AY.9.2 | 0.000037 |
N | 337 | I337I | atC | atT | 1 | 1 | AY.94 | 0.000443 |
N | 337 | I337del | ATC | --- | 1 | 1 | AY.99 | 0.001049 |
N | 337 | I337T | aTC | aCT | 1 | 1 | B | 0.000128 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1 | 0.000009 |
N | 337 | I337T | aTc | aCc | 1 | 1 | B.1 | 0.000009 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.1 | 0.000018 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.1.1 | 0.000327 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.133 | 0.008475 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.159 | 0.004673 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.161 | 0.003534 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.170 | 0.001247 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.207 | 0.001182 |
N | 337 | I337T | aTc | aCc | 1 | 1 | B.1.1.214 | 0.000055 |
N | 337 | I337T | aTc | aCc | 1 | 1 | B.1.1.222 | 0.000204 |
N | 337 | I337T | aTc | aCc | 1 | 1 | B.1.1.236 | 0.006897 |
N | 337 | I337I | atC | atA | 1 | 1 | B.1.1.241 | 0.00207 |
N | 337 | I337M | atC | atG | 1 | 1 | B.1.1.25 | 0.000569 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.258 | 0.003257 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.269 | 0.001353 |
N | 337 | I337L | Atc | Ctc | 1 | 1 | B.1.1.27 | 0.00565 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.284 | 0.000107 |
N | 337 | I337M | atC | atG | 1 | 1 | B.1.1.306 | 0.000438 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.1.306 | 0.000438 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.311 | 0.000358 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.312 | 0.001912 |
N | 337 | I337T | aTc | aCc | 1 | 1 | B.1.1.317 | 0.000412 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.1.326 | 0.001761 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.329 | 0.003846 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.368 | 0.003086 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.369 | 0.000446 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.1.398 | 0.003226 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.417 | 0.002703 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.419 | 0.007407 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.459 | 0.015385 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.507 | 0.008696 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.521 | 0.005348 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.1.525 | 0.005464 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.127 | 0.002198 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.128 | 0.000635 |
N | 337 | I337L | AtC | TtG | 1 | 1 | B.1.157 | 0.002985 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.177 | 0.000013 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.10 | 0.000878 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.15 | 0.000631 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.16 | 0.000664 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.177.20 | 0.001517 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.21 | 0.000076 |
N | 337 | I337T | aTc | aCc | 1 | 1 | B.1.177.31 | 0.011494 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.32 | 0.00135 |
N | 337 | I337M | atC | atG | 1 | 1 | B.1.177.33 | 0.001645 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.177.60 | 0.000218 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.67 | 0.007634 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.7 | 0.000165 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.75 | 0.001041 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.177.83 | 0.001481 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.177.84 | 0.006667 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.177.86 | 0.000183 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.180 | 0.05 |
N | 337 | I337L | Atc | Ctc | 1 | 1 | B.1.2 | 0.000009 |
N | 337 | I337M | atC | atG | 1 | 1 | B.1.2 | 0.000009 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.206 | 0.000816 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.232 | 0.000537 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.234 | 0.000132 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.239 | 0.001221 |
N | 337 | I337M | atC | atG | 1 | 1 | B.1.258.17 | 0.000104 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.267 | 0.018519 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.313 | 0.006579 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.320 | 0.001245 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.326 | 0.007576 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.338 | 0.008621 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.340 | 0.004292 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.351 | 0.00003 |
N | 337 | I337S | aTc | aGc | 1 | 1 | B.1.351 | 0.00003 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.36.1 | 0.00114 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.36.1 | 0.00114 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.36.10 | 0.004785 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.36.10 | 0.004785 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.36.27 | 0.000763 |
N | 337 | I337del1 | aTC | aC- | 1 | 1 | B.1.36.29 | 0.000517 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.36.31 | 0.001751 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.36.39 | 0.002217 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.361 | 0.001289 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.391 | 0.001127 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.398 | 0.002976 |
N | 337 | I337L | Atc | Ctc | 1 | 1 | B.1.400 | 0.000429 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.401 | 0.008197 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.404 | 0.001302 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.413 | 0.004255 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 337 | I337N | aTc | aAc | 1 | 1 | B.1.427 | 0.00005 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.428 | 0.00102 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.429 | 0.000024 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.456 | 0.003268 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.459 | 0.004082 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.462 | 0.007246 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.467 | 0.04 |
N | 337 | I337del1 | aTC | aC- | 1 | 1 | B.1.468 | 0.005714 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.470 | 0.001404 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.471 | 0.002732 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.499 | 0.00105 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.501 | 0.007353 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.525 | 0.000113 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | B.1.526 | 0.000024 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.561 | 0.000397 |
N | 337 | I337I | atC | atA | 1 | 1 | B.1.564 | 0.000426 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.575 | 0.000303 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.587 | 0.001898 |
N | 337 | I337I | atC | atA | 1 | 1 | B.1.589 | 0.007576 |
N | 337 | I337T | aTc | aCc | 1 | 1 | B.1.595 | 0.000261 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.1.617.1 | 0.000129 |
N | 337 | I337del1 | aTc | a-c | 1 | 1 | B.1.617.1 | 0.000129 |
N | 337 | I337S | aTc | aGc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 337 | I337W | ATC | TGG | 1 | 1 | B.1.617.2 | 0.000004 |
N | 337 | I337X | ATC | TGA | 1 | 1 | B.1.617.2 | 0.000004 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.621 | 0.000089 |
N | 337 | I337I | atC | atA | 1 | 1 | B.1.630 | 0.005236 |
N | 337 | I337del | ATC | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 337 | I337I | atC | atT | 1 | 1 | B.1.631 | 0.003367 |
N | 337 | I337I | atC | atT | 1 | 1 | B.4 | 0.002208 |
N | 337 | I337I | atC | atT | 1 | 1 | B.49 | 0.05 |
N | 337 | I337I | atC | atT | 1 | 1 | B.52 | 0.010101 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | B.6 | 0.00091 |
N | 337 | I337I | atC | atT | 1 | 1 | B.6.8 | 0.008264 |
N | 337 | I337I | atC | atT | 1 | 1 | C.30 | 0.001727 |
N | 337 | I337I | atC | atT | 1 | 1 | C.36.3 | 0.000567 |
N | 337 | I337M | atC | atG | 1 | 1 | C.37 | 0.000116 |
N | 337 | I337I | atC | atT | 1 | 1 | C.39 | 0.018868 |
N | 337 | I337T | aTc | aCc | 1 | 1 | D.2 | 0.000075 |
N | 337 | I337L | Atc | Ctc | 1 | 1 | D.2 | 0.000075 |
N | 337 | I337I | atC | atT | 1 | 1 | D.5 | 0.004975 |
N | 337 | I337I | atC | atT | 1 | 1 | G.1 | 0.041667 |
N | 337 | I337I | atC | atT | 1 | 1 | L.3 | 0.003546 |
N | 337 | I337I | atC | atT | 1 | 1 | M.1 | 0.023256 |
N | 337 | I337I | atC | atT | 1 | 1 | N.2 | 0.038462 |
N | 337 | I337I | atC | atT | 1 | 1 | N.9 | 0.005952 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | P.1 | 0.000016 |
N | 337 | I337del | ATC | --- | 1 | 1 | P.1.1 | 0.000318 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | P.1.10 | 0.000269 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | P.1.14 | 0.000048 |
N | 337 | I337I | atC | atT | 1 | 1 | P.1.16 | 0.000374 |
N | 337 | I337I | atC | atT | 1 | 1 | P.1.17 | 0.000162 |
N | 337 | I337I | atC | atA | 1 | 1 | P.1.4 | 0.000977 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | P.2 | 0.000187 |
N | 337 | I337F | Atc | Ttc | 1 | 1 | P.7 | 0.004367 |
N | 337 | I337del | ATC | --- | 1 | 1 | Q.2 | 0.000613 |
N | 337 | I337V | Atc | Gtc | 1 | 1 | Q.3 | 0.000145 |
N | 337 | I337T | aTc | aCc | 1 | 1 | Q.3 | 0.000145 |
N | 337 | I337I | atC | atT | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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