CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 33 & Codon = Tgt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	33	S33C		nonsyn	Agt	Tgt	357	357	1	28370-28372

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	33	S33C	Agt	Tgt	357	357	All	0.000068
N	33	S33C	Agt	Tgt	183	183	B.1.1.7	0.000164
N	33	S33C	Agt	Tgt	36	36	B.1.617.2	0.000136
N	33	S33C	Agt	Tgt	32	32	AY.44	0.000195
N	33	S33C	Agt	Tgt	31	31	AY.61	0.003248
N	33	S33C	Agt	Tgt	13	13	B.1.2	0.000114
N	33	S33C	Agt	Tgt	8	8	AY.39	0.000198
N	33	S33C	Agt	Tgt	7	7	AY.43	0.000031
N	33	S33C	Agt	Tgt	7	7	AY.9	0.000473
N	33	S33C	Agt	Tgt	5	5	B.1.1.519	0.000199
N	33	S33C	Agt	Tgt	4	4	AY.4	0.000006
N	33	S33C	Agt	Tgt	3	3	AY.103	0.000019
N	33	S33C	Agt	Tgt	3	3	AY.23	0.000209
N	33	S33C	Agt	Tgt	3	3	AY.26	0.000085
N	33	S33C	Agt	Tgt	2	2	AY.16	0.000759
N	33	S33C	Agt	Tgt	2	2	B.1.1.214	0.000111
N	33	S33C	Agt	Tgt	1	1	AY.118	0.000063
N	33	S33C	Agt	Tgt	1	1	AY.16.1	0.00047
N	33	S33C	Agt	Tgt	1	1	AY.21	0.001898
N	33	S33C	Agt	Tgt	1	1	AY.52	0.000814
N	33	S33C	Agt	Tgt	1	1	AY.58	0.000907
N	33	S33C	Agt	Tgt	1	1	AY.65	0.000533
N	33	S33C	Agt	Tgt	1	1	AY.68	0.000274
N	33	S33C	Agt	Tgt	1	1	AY.75.1	0.00018
N	33	S33C	Agt	Tgt	1	1	AY.98	0.000079
N	33	S33C	Agt	Tgt	1	1	B.1.1	0.000018
N	33	S33C	Agt	Tgt	1	1	B.1.1.176	0.000439
N	33	S33C	Agt	Tgt	1	1	B.1.1.232	0.001815
N	33	S33C	Agt	Tgt	1	1	B.1.177.81	0.000189
N	33	S33C	Agt	Tgt	1	1	B.1.221	0.000071
N	33	S33C	Agt	Tgt	1	1	B.1.36	0.000146
N	33	S33C	Agt	Tgt	1	1	B.1.466.2	0.000391
N	33	S33C	Agt	Tgt	1	1	D.2	0.000075
N	33	S33C	Agt	Tgt	1	1	P.1	0.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.