CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 33

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N33S33InonsynaGtaTt30383038128370-28372
N33S33SsynagTagC784784128370-28372
N33S33GnonsynAgtGgt777777128370-28372
N33S33CnonsynAgtTgt357357128370-28372
N33S33NnonsynaGtaAt200200128370-28372
N33S33TnonsynaGtaCt6666128370-28372
N33S33RnonsynagTagG44240.54545528370-28372
N33S33RnonsynagTagA44170.38636428370-28372
N33S33RnonsynAgtCgt4430.068181828370-28372
N33S33deldelAGT---4141128370-28372
N33S33DnonsynAGtGAt11128370-28372
N33S33del1delagTag-11128370-28372

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N33S33IaGtaTt30383038All0.000581
N33S33SagTagC784784All0.00015
N33S33GAgtGgt777777All0.000149
N33S33IaGtaTt731731W.40.987838
N33S33GAgtGgt506506B.1.177.420.452594
N33S33CAgtTgt357357All0.000068
N33S33IaGtaTt301301AY.40.000468
N33S33IaGtaTt268268B.1.1.70.00024
N33S33SagTagC214214AY.40.000333
N33S33NaGtaAt200200All0.000038
N33S33IaGtaTt189189B.1.617.20.000712
N33S33CAgtTgt183183B.1.1.70.000164
N33S33SagTagC162162B.1.1.70.000145
N33S33IaGtaTt130130B.1.1201
N33S33SagTagC129129B.1.617.20.000486
N33S33GAgtGgt125125AY.1030.000776
N33S33IaGtaTt111111AY.430.000492
N33S33SagTagC7979AY.1020.002095
N33S33IaGtaTt7878B.1.5260.001833
N33S33IaGtaTt7474AY.30.000736
N33S33TaGtaCt6666All0.000013
N33S33IaGtaTt6363AY.1170.005325
N33S33IaGtaTt5353AY.440.000323
N33S33IaGtaTt4949AY.200.001904
N33S33TaGtaCt4747B.1.1.70.000042
N33S33IaGtaTt4646B.10.000421
N33S33NaGtaAt4545B.1.1.70.00004
N33S33RagTagG2444All0.000005
N33S33RagTagA1744All0.000003
N33S33RAgtCgt344All0.000001
N33S33IaGtaTt4242B.1.20.00037
N33S33delAGT---4141All0.000008
N33S33NaGtaAt4141B.1.1600.001279
N33S33IaGtaTt3838AY.1030.000236
N33S33IaGtaTt3737AY.98.10.001792
N33S33GAgtGgt3737B.1.2580.002462
N33S33IaGtaTt3636B.1.1600.001123
N33S33IaGtaTt3636B.1.160.300.107143
N33S33CAgtTgt3636B.1.617.20.000136
N33S33IaGtaTt3333AY.1020.000875
N33S33IaGtaTt3333AY.260.000934
N33S33IaGtaTt3333AY.9.20.001212
N33S33CAgtTgt3232AY.440.000195
N33S33IaGtaTt3131AY.250.000186
N33S33SagTagC3131AY.4.50.003332
N33S33CAgtTgt3131AY.610.003248
N33S33IaGtaTt2727AY.140.002376
N33S33IaGtaTt2727B.1.3510.000803
N33S33IaGtaTt2626AY.230.001813
N33S33SagTagC2323AY.440.00014
N33S33SagTagC2222AY.160.008352
N33S33IaGtaTt2121P.10.000331
N33S33IaGtaTt2020AY.990.020986
N33S33GAgtGgt2020B.1.1.70.000018
N33S33IaGtaTt1919AY.46.60.001372
N33S33SagTagC1818B.1.1.1590.084112
N33S33IaGtaTt1717B.1.10.000308
N33S33SagTagC1616AY.30.000159
N33S33IaGtaTt1616AY.420.000644
N33S33IaGtaTt1616P.1.170.002588
N33S33NaGtaAt1515B.10.000137
N33S33IaGtaTt1515B.1.5090.012987
N33S33IaGtaTt1414AY.290.000221
N33S33TaGtaCt1414AY.70.002744
N33S33IaGtaTt1414B.1.1770.000184
N33S33GAgtGgt1414B.1.20.000123
N33S33SagTagC1414B.1.2430.000974
N33S33GAgtGgt1414B.1.617.20.000053
N33S33IaGtaTt1313AY.390.000321
N33S33CAgtTgt1313B.1.20.000114
N33S33IaGtaTt1212AY.1190.000424
N33S33IaGtaTt1111AY.340.001067
N33S33IaGtaTt1111B.1.1.4100.407407
N33S33IaGtaTt1111B.1.2580.000732
N33S33IaGtaTt1111B.1.36.170.005435
N33S33IaGtaTt1010AY.980.00079
N33S33NaGtaAt99AY.290.000142
N33S33NaGtaAt99AY.40.000014
N33S33SagTagC99B.1.177.720.030508
N33S33IaGtaTt99B.1.3890.009018
N33S33IaGtaTt99B.1.4290.000212
N33S33IaGtaTt88AY.1130.001139
N33S33CAgtTgt88AY.390.000198
N33S33RagTagG88AY.40.000012
N33S33IaGtaTt88B.1.1.5190.000318
N33S33IaGtaTt77AY.1000.000322
N33S33IaGtaTt77AY.1110.001282
N33S33NaGtaAt77AY.300.00277
N33S33IaGtaTt77AY.330.000467
N33S33IaGtaTt77AY.4.20.000152
N33S33CAgtTgt77AY.430.000031
N33S33IaGtaTt77AY.470.000218
N33S33CAgtTgt77AY.90.000473
N33S33IaGtaTt77B.1.1.2140.000388
N33S33IaGtaTt77B.1.177.530.016746
N33S33NaGtaAt77B.1.3750.005738
N33S33IaGtaTt77B.1.6210.00062
N33S33SagTagC66AY.1030.000037
N33S33GAgtGgt66AY.30.00006
N33S33NaGtaAt66AY.430.000027
N33S33IaGtaTt66B.1.1.280.001867
N33S33IaGtaTt66B.1.1.3060.00263
N33S33delAGT---66B.1.1.70.000005
N33S33IaGtaTt66B.1.2430.000418
N33S33RagTagG66B.1.3510.000178
N33S33NaGtaAt66B.1.617.20.000023
N33S33IaGtaTt66B.1.6280.002114
N33S33SagTagC55AY.390.000124
N33S33IaGtaTt55AY.39.10.000198
N33S33GAgtGgt55AY.40.000008
N33S33SagTagC55AY.430.000022
N33S33IaGtaTt55AY.920.001436
N33S33NaGtaAt55B.1.10.000091
N33S33IaGtaTt55B.1.1.5170.034014
N33S33CAgtTgt55B.1.1.5190.000199
N33S33IaGtaTt55B.1.1.5230.007812
N33S33NaGtaAt55B.1.1770.000066
N33S33IaGtaTt55B.1.177.790.01171
N33S33NaGtaAt55B.1.20.000044
N33S33IaGtaTt55B.1.3960.003529
N33S33IaGtaTt55P.20.000933
N33S33IaGtaTt44AY.1180.000251
N33S33SagTagC44AY.250.000024
N33S33GAgtGgt44AY.250.000024
N33S33CAgtTgt44AY.40.000006
N33S33GAgtGgt44AY.440.000024
N33S33IaGtaTt44AY.450.000487
N33S33IaGtaTt44AY.46.40.000658
N33S33delAGT---44AY.50.000083
N33S33IaGtaTt44AY.90.00027
N33S33IaGtaTt44B0.000511
N33S33SagTagC44B.10.000037
N33S33IaGtaTt44B.1.1.510.006873
N33S33SagTagC44B.1.1.5190.000159
N33S33RagTagA34B.1.1770.00004
N33S33RagTagG14B.1.1770.000013
N33S33SagTagC44B.1.2210.000284
N33S33NaGtaAt44B.1.2210.000284
N33S33IaGtaTt44B.1.2400.000862
N33S33IaGtaTt44B.1.5960.000349
N33S33IaGtaTt44B.1.617.10.000516
N33S33GAgtGgt33AY.1000.000138
N33S33CAgtTgt33AY.1030.000019
N33S33CAgtTgt33AY.230.000209
N33S33CAgtTgt33AY.260.000085
N33S33IaGtaTt33AY.380.001498
N33S33delAGT---33AY.40.000005
N33S33GAgtGgt33AY.4.50.000322
N33S33delAGT---33AY.430.000013
N33S33IaGtaTt33AY.50.000062
N33S33IaGtaTt33AY.5.30.001012
N33S33NaGtaAt33AY.610.000314
N33S33GAgtGgt33AY.710.001425
N33S33IaGtaTt33AY.750.000168
N33S33IaGtaTt33AY.75.10.000541
N33S33IaGtaTt33AY.840.001312
N33S33RagTagA33B.1.1.1890.004539
N33S33IaGtaTt33B.1.1.370.000579
N33S33IaGtaTt33B.1.1.4320.003797
N33S33GAgtGgt33B.1.1.700.001023
N33S33SagTagC33B.1.1600.000094
N33S33GAgtGgt33B.1.1770.00004
N33S33NaGtaAt33B.1.177.570.000843
N33S33IaGtaTt33B.1.360.000438
N33S33IaGtaTt33B.1.36.360.001806
N33S33IaGtaTt33B.1.4270.000151
N33S33IaGtaTt33B.1.5240.004219
N33S33IaGtaTt33B.1.5300.021429
N33S33NaGtaAt33B.30.002492
N33S33IaGtaTt33C.360.002732
N33S33GAgtGgt33P.1.20.003468
N33S33GAgtGgt22A.20.001324
N33S33IaGtaTt22AY.1010.000981
N33S33SagTagC22AY.1070.000932
N33S33IaGtaTt22AY.120.2.10.000997
N33S33NaGtaAt22AY.140.000176
N33S33CAgtTgt22AY.160.000759
N33S33delAGT---22AY.230.000139
N33S33GAgtGgt22AY.330.000134
N33S33SagTagC22AY.34.10.00102
N33S33delAGT---22AY.460.000208
N33S33SagTagC22AY.50.000041
N33S33IaGtaTt22AY.5.40.000553
N33S33SagTagC22AY.530.000575
N33S33SagTagC22AY.540.000191
N33S33IaGtaTt22AY.690.000373
N33S33RagTagG22AY.700.000417
N33S33IaGtaTt22AY.9.10.000167
N33S33IaGtaTt22AY.900.001369
N33S33SagTagC22AY.980.000158
N33S33GAgtGgt22B.10.000018
N33S33GAgtGgt22B.1.10.000036
N33S33CAgtTgt22B.1.1.2140.000111
N33S33IaGtaTt22B.1.1.2200.003717
N33S33IaGtaTt22B.1.1.2530.005013
N33S33IaGtaTt22B.1.1.630.000772
N33S33IaGtaTt22B.1.1.860.071429
N33S33RagTagA22B.1.177.600.000437
N33S33IaGtaTt22B.1.177.810.000379
N33S33RagTagG22B.1.20.000018
N33S33SagTagC22B.1.20.000018
N33S33RagTagA22B.1.2430.000139
N33S33delAGT---22B.1.617.20.000008
N33S33RagTagA12B.1.617.20.000004
N33S33RAgtCgt12B.1.617.20.000004
N33S33IaGtaTt11A0.000387
N33S33NaGtaAt11A.20.000662
N33S33IaGtaTt11A.2.50.000499
N33S33NaGtaAt11A.2.50.000499
N33S33DAGtGAt11All0
N33S33del1agTag-11All0
N33S33NaGtaAt11AY.1030.000006
N33S33RagTagG11AY.1030.000006
N33S33IaGtaTt11AY.1060.000335
N33S33IaGtaTt11AY.1070.000466
N33S33IaGtaTt11AY.1100.000113
N33S33GAgtGgt11AY.1110.000183
N33S33SagTagC11AY.1170.000085
N33S33CAgtTgt11AY.1180.000063
N33S33delAGT---11AY.1200.000037
N33S33IaGtaTt11AY.130.000161
N33S33SagTagC11AY.130.000161
N33S33RAgtCgt11AY.140.000088
N33S33CAgtTgt11AY.16.10.00047
N33S33SagTagC11AY.170.008197
N33S33NaGtaAt11AY.200.000039
N33S33CAgtTgt11AY.210.001898
N33S33GAgtGgt11AY.230.00007
N33S33NaGtaAt11AY.250.000006
N33S33GAgtGgt11AY.260.000028
N33S33NaGtaAt11AY.29.10.000221
N33S33NaGtaAt11AY.30.00001
N33S33delAGT---11AY.30.00001
N33S33IaGtaTt11AY.3.10.000085
N33S33delAGT---11AY.300.000396
N33S33SagTagC11AY.360.000148
N33S33RagTagG11AY.390.000025
N33S33NaGtaAt11AY.39.10.00004
N33S33IaGtaTt11AY.39.20.001541
N33S33NaGtaAt11AY.4.20.000022
N33S33TaGtaCt11AY.4.2.10.000149
N33S33delAGT---11AY.4.40.000409
N33S33IaGtaTt11AY.400.000964
N33S33NaGtaAt11AY.440.000006
N33S33NaGtaAt11AY.450.000122
N33S33IaGtaTt11AY.460.000104
N33S33delAGT---11AY.46.60.000072
N33S33delAGT---11AY.5.30.000337
N33S33CAgtTgt11AY.520.000814
N33S33SagTagC11AY.550.000917
N33S33IaGtaTt11AY.550.000917
N33S33CAgtTgt11AY.580.000907
N33S33GAgtGgt11AY.60.000041
N33S33NaGtaAt11AY.60.000041
N33S33delAGT---11AY.600.000938
N33S33IaGtaTt11AY.610.000105
N33S33CAgtTgt11AY.650.000533
N33S33IaGtaTt11AY.680.000274
N33S33CAgtTgt11AY.680.000274
N33S33IaGtaTt11AY.7.10.000113
N33S33IaGtaTt11AY.7.20.000559
N33S33IaGtaTt11AY.730.000665
N33S33SagTagC11AY.740.000116
N33S33IaGtaTt11AY.740.000116
N33S33SagTagC11AY.750.000056
N33S33delAGT---11AY.75.10.00018
N33S33CAgtTgt11AY.75.10.00018
N33S33IaGtaTt11AY.780.001541
N33S33NaGtaAt11AY.840.000437
N33S33delAGT---11AY.9.10.000084
N33S33GAgtGgt11AY.9.20.000037
N33S33IaGtaTt11AY.910.00073
N33S33GAgtGgt11AY.920.000287
N33S33IaGtaTt11AY.930.000273
N33S33CAgtTgt11AY.980.000079
N33S33SagTagC11AY.98.10.000048
N33S33delAGT---11AY.990.001049
N33S33IaGtaTt11AY.99.20.000092
N33S33TaGtaCt11AY.99.20.000092
N33S33RAgtCgt11B.10.000009
N33S33delAGT---11B.10.000009
N33S33SagTagC11B.1.10.000018
N33S33delAGT---11B.1.10.000018
N33S33CAgtTgt11B.1.10.000018
N33S33IaGtaTt11B.1.1.1280.007092
N33S33delAGT---11B.1.1.1390.022727
N33S33IaGtaTt11B.1.1.1740.003378
N33S33CAgtTgt11B.1.1.1760.000439
N33S33delAGT---11B.1.1.2160.00089
N33S33NaGtaAt11B.1.1.2160.00089
N33S33CAgtTgt11B.1.1.2320.001815
N33S33IaGtaTt11B.1.1.250.000569
N33S33IaGtaTt11B.1.1.2620.015152
N33S33NaGtaAt11B.1.1.2770.000759
N33S33IaGtaTt11B.1.1.2840.000107
N33S33IaGtaTt11B.1.1.2940.001266
N33S33RagTagG11B.1.1.3060.000438
N33S33IaGtaTt11B.1.1.3110.000358
N33S33GAgtGgt11B.1.1.3170.000412
N33S33IaGtaTt11B.1.1.3170.000412
N33S33IaGtaTt11B.1.1.3260.001761
N33S33IaGtaTt11B.1.1.330.000421
N33S33IaGtaTt11B.1.1.3360.016667
N33S33IaGtaTt11B.1.1.3720.000689
N33S33IaGtaTt11B.1.1.390.00051
N33S33delAGT---11B.1.1.4200.001006
N33S33IaGtaTt11B.1.1.4280.009434
N33S33IaGtaTt11B.1.1.4340.000349
N33S33GAgtGgt11B.1.1.4340.000349
N33S33RagTagA11B.1.1.4380.05
N33S33IaGtaTt11B.1.1.500.000679
N33S33IaGtaTt11B.1.1.700.000341
N33S33GAgtGgt11B.1.1050.009615
N33S33IaGtaTt11B.1.110.30.000718
N33S33NaGtaAt11B.1.130.002375
N33S33IaGtaTt11B.1.1570.002985
N33S33GAgtGgt11B.1.1600.000031
N33S33IaGtaTt11B.1.160.230.004831
N33S33TaGtaCt11B.1.1770.000013
N33S33SagTagC11B.1.177.160.000664
N33S33SagTagC11B.1.177.20.004545
N33S33IaGtaTt11B.1.177.430.001477
N33S33SagTagC11B.1.177.510.004566
N33S33delAGT---11B.1.177.630.002703
N33S33IaGtaTt11B.1.177.70.000165
N33S33IaGtaTt11B.1.177.750.001041
N33S33delAGT---11B.1.177.750.001041
N33S33CAgtTgt11B.1.177.810.000189
N33S33SagTagC11B.1.2060.000816
N33S33IaGtaTt11B.1.214.20.0006
N33S33CAgtTgt11B.1.2210.000071
N33S33delAGT---11B.1.2210.000071
N33S33RagTagA11B.1.2210.000071
N33S33IaGtaTt11B.1.2320.000537
N33S33IaGtaTt11B.1.258.170.000104
N33S33IaGtaTt11B.1.3200.001245
N33S33IaGtaTt11B.1.3240.001605
N33S33del1agTag-11B.1.3510.00003
N33S33SagTagC11B.1.3510.00003
N33S33CAgtTgt11B.1.360.000146
N33S33IaGtaTt11B.1.36.290.000517
N33S33SagTagC11B.1.3610.001289
N33S33NaGtaAt11B.1.3700.008
N33S33RagTagG11B.1.4160.001269
N33S33GAgtGgt11B.1.4220.000812
N33S33RagTagA11B.1.4280.00102
N33S33delAGT---11B.1.4390.005917
N33S33IaGtaTt11B.1.4430.004673
N33S33IaGtaTt11B.1.4620.007246
N33S33IaGtaTt11B.1.466.20.000391
N33S33CAgtTgt11B.1.466.20.000391
N33S33GAgtGgt11B.1.4800.002488
N33S33SagTagC11B.1.4970.000315
N33S33NaGtaAt11B.1.5250.000113
N33S33GAgtGgt11B.1.5250.000113
N33S33IaGtaTt11B.1.5250.000113
N33S33NaGtaAt11B.1.5260.000024
N33S33RagTagA11B.1.5260.000024
N33S33RagTagA11B.1.5380.008065
N33S33NaGtaAt11B.1.5580.004566
N33S33IaGtaTt11B.1.5610.000397
N33S33RagTagA11B.1.5650.00081
N33S33IaGtaTt11B.1.575.10.002439
N33S33IaGtaTt11B.1.5950.000261
N33S33SagTagC11B.1.5950.000261
N33S33DAGtGAt11B.1.617.20.000004
N33S33TaGtaCt11B.1.617.20.000004
N33S33NaGtaAt11B.1.6210.000089
N33S33IaGtaTt11B.1.6340.003425
N33S33IaGtaTt11B.280.003279
N33S33IaGtaTt11B.3.10.001658
N33S33GAgtGgt11C.10.002392
N33S33SagTagC11C.1.20.004255
N33S33IaGtaTt11C.140.004329
N33S33IaGtaTt11C.36.30.000567
N33S33NaGtaAt11C.370.000116
N33S33CAgtTgt11D.20.000075
N33S33IaGtaTt11D.20.000075
N33S33CAgtTgt11P.10.000016
N33S33TaGtaCt11P.10.000016
N33S33NaGtaAt11P.10.000016
N33S33GAgtGgt11P.10.000016
N33S33IaGtaTt11P.1.120.000484
N33S33GAgtGgt11P.1.150.000232
N33S33RagTagG11P.20.000187
N33S33IaGtaTt11Q.10.000126
N33S33NaGtaAt11Q.30.000145
N33S33NaGtaAt11Q.40.000455
N33S33IaGtaTt11Q.80.000165