CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 325

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N325T325InonsynaCaaTa33043304129246-29248
N325T325TsynacAacG1841280.69565229246-29248
N325T325TsynacAacT184460.2529246-29248
N325T325TsynacAacC184100.054347829246-29248
N325T325AnonsynAcaGca82790.96341529246-29248
N325T325del1delaCaa-a82740.90243929246-29248
N325T325del1delACa-Aa8250.060975629246-29248
N325T325del1delAca-ca8230.036585429246-29248
N325T325AnonsynAcAGcC8220.024390229246-29248
N325T325AnonsynAcAGcG8210.012195129246-29248
N325T325KnonsynaCaaAa6969129246-29248
N325T325deldelACA---2626129246-29248
N325T325SnonsynAcaTca21200.95238129246-29248
N325T325SnonsynaCAaGC2110.04761929246-29248
N325T325RnonsynaCaaGa1212129246-29248
N325T325PnonsynAcACcC520.429246-29248
N325T325PnonsynAcaCca520.429246-29248
N325T325PnonsynAcACcG510.229246-29248
N325T325MnonsynaCAaTG22129246-29248
N325T325HnonsynACACAT11129246-29248

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N325T325IaCaaTa33043304All0.000632
N325T325IaCaaTa935935B.1.1.70.000837
N325T325IaCaaTa468468AY.40.000728
N325T325IaCaaTa231231B.1.177.150.145741
N325T325TacAacG128184All0.000024
N325T325TacAacT46184All0.000009
N325T325TacAacC10184All0.000002
N325T325IaCaaTa175175B.1.617.20.000659
N325T325IaCaaTa158158AY.1030.000981
N325T325IaCaaTa8383B.1.258.170.00863
N325T325AAcaGca7982All0.000015
N325T325del1aCaa-a7482All0.000014
N325T325del1ACa-Aa582All0.000001
N325T325del1Aca-ca382All0.000001
N325T325AAcAGcC282All0
N325T325AAcAGcG182All0
N325T325KaCaaAa6969All0.000013
N325T325del1aCaa-a6166B.1.1.70.000055
N325T325del1ACa-Aa566B.1.1.70.000004
N325T325IaCaaTa5757AY.430.000253
N325T325IaCaaTa5757AY.750.003193
N325T325IaCaaTa5151B.1.10.000925
N325T325TacAacG3450B.1.1.70.00003
N325T325TacAacT1150B.1.1.70.00001
N325T325TacAacC550B.1.1.70.000004
N325T325IaCaaTa4949B.1.1770.000645
N325T325IaCaaTa4949B.1.20.000431
N325T325IaCaaTa4646AY.440.00028
N325T325IaCaaTa4242AY.30.000418
N325T325IaCaaTa4141B.1.6161
N325T325IaCaaTa4040B.10.000366
N325T325IaCaaTa3737B.1.4290.000871
N325T325IaCaaTa3535C.370.004062
N325T325IaCaaTa3434P.1.140.001625
N325T325IaCaaTa3232AY.250.000192
N325T325IaCaaTa3232P.10.000504
N325T325TacAacG3031B.1.20.000264
N325T325TacAacT131B.1.20.000009
N325T325IaCaaTa2929AY.1190.001024
N325T325TacAacG2929AY.470.000902
N325T325AAcaGca2828AY.250.000168
N325T325delACA---2626All0.000005
N325T325IaCaaTa2525AY.360.003705
N325T325IaCaaTa2525B.1.5700.073529
N325T325SAcaTca2021All0.000004
N325T325SaCAaGC121All0
N325T325IaCaaTa2121AY.680.005749
N325T325IaCaaTa2020AY.1000.00092
N325T325IaCaaTa2020B.1.1600.000624
N325T325IaCaaTa1818AY.260.00051
N325T325IaCaaTa1616AY.390.000395
N325T325IaCaaTa1313AY.330.000868
N325T325IaCaaTa1313AY.4.20.000282
N325T325KaCaaAa1313B.1.1.5150.26
N325T325IaCaaTa1313B.1.1.5190.000516
N325T325RaCaaGa1212All0.000002
N325T325KaCaaAa1212AY.440.000073
N325T325IaCaaTa1212B.1.1150.26087
N325T325TacAacT1011AY.1190.000353
N325T325TacAacG111AY.1190.000035
N325T325KaCaaAa1111AY.40.000017
N325T325IaCaaTa1111B.1.5260.000259
N325T325IaCaaTa1010AY.1100.001127
N325T325IaCaaTa1010B.1.177.210.000765
N325T325IaCaaTa1010B.1.2580.000665
N325T325KaCaaAa99AY.3.10.000767
N325T325TacAacT69AY.40.000009
N325T325TacAacG39AY.40.000005
N325T325IaCaaTa99B.1.160.220.060811
N325T325SAcaTca99B.1.3510.000268
N325T325IaCaaTa99B.1.3510.000268
N325T325IaCaaTa99B.1.4000.003861
N325T325IaCaaTa99B.1.416.10.014063
N325T325TacAacT88AY.250.000048
N325T325IaCaaTa88B.1.6210.000708
N325T325IaCaaTa77AY.200.000272
N325T325IaCaaTa77AY.60.000288
N325T325IaCaaTa77B.1.1.2140.000388
N325T325IaCaaTa77B.1.177.740.106061
N325T325IaCaaTa77B.1.4990.007353
N325T325IaCaaTa66AY.290.000095
N325T325AAcaGca66B.1.1.70.000005
N325T325IaCaaTa66B.1.2360.01232
N325T325IaCaaTa66B.1.2400.001293
N325T325IaCaaTa66D.20.00045
N325T325IaCaaTa66Q.30.00087
N325T325TacAacG350.166667
N325T325PAcACcC250.111111
N325T325PAcaCca250.111111
N325T325TacAacC250.111111
N325T325PAcACcG150.055556
N325T325PAcaCca25All0
N325T325PAcACcC25All0
N325T325PAcACcG15All0
N325T325IaCaaTa55AY.1170.000423
N325T325IaCaaTa55AY.1180.000313
N325T325SAcaTca55AY.440.00003
N325T325IaCaaTa55AY.620.002179
N325T325IaCaaTa55AY.9.20.000184
N325T325KaCaaAa55B.10.000046
N325T325IaCaaTa55B.1.1460.021186
N325T325IaCaaTa55B.1.4270.000252
N325T325IaCaaTa55B.1.617.10.000645
N325T325TacAacG55P.10.000079
N325T325IaCaaTa44AY.10.001583
N325T325IaCaaTa44AY.1020.000106
N325T325AAcaGca44AY.40.000006
N325T325delACA---44AY.430.000018
N325T325AAcaGca44AY.430.000018
N325T325TacAacG34AY.440.000018
N325T325TacAacC14AY.440.000006
N325T325IaCaaTa44AY.920.001149
N325T325IaCaaTa44B.1.1.370.000771
N325T325IaCaaTa44B.1.177.810.000757
N325T325IaCaaTa44B.1.2430.000278
N325T325IaCaaTa44B.1.351.50.002398
N325T325IaCaaTa44B.1.466.20.001565
N325T325AAcAGcG130.055556
N325T325AAcAGcC130.055556
N325T325AAcaGca130.055556
N325T325TacAacT23AY.1030.000012
N325T325TacAacG13AY.1030.000006
N325T325IaCaaTa33AY.110.004016
N325T325IaCaaTa33AY.230.000209
N325T325AAcaGca33AY.240.001293
N325T325IaCaaTa33AY.420.000121
N325T325IaCaaTa33AY.450.000365
N325T325IaCaaTa33B0.000383
N325T325IaCaaTa33B.1.1.1280.021277
N325T325IaCaaTa33B.1.1.1580.036585
N325T325IaCaaTa33B.1.1.4860.004732
N325T325AAcaGca33B.1.1600.000094
N325T325del1aCaa-a33B.1.177.820.001432
N325T325RaCaaGa33B.1.20.000026
N325T325IaCaaTa33B.1.2060.002447
N325T325IaCaaTa33B.1.2210.000213
N325T325IaCaaTa33B.1.2520.019868
N325T325IaCaaTa33B.1.3240.004815
N325T325del1aCaa-a33B.1.3510.000089
N325T325IaCaaTa33B.1.3690.000856
N325T325IaCaaTa33B.1.3750.002459
N325T325IaCaaTa33B.1.3960.002117
N325T325IaCaaTa33B.1.4010.02459
N325T325IaCaaTa33B.1.5750.00091
N325T325AAcaGca33B.1.617.20.000011
N325T325TacAacG23B.1.617.20.000008
N325T325TacAacT13B.1.617.20.000004
N325T325IaCaaTa33P.20.00056
N325T325IaCaaTa33Q.80.000495
N325T325MaCAaTG220.111111
N325T325IaCaaTa220.111111
N325T325delACA---220.111111
N325T325MaCAaTG22All0
N325T325TacAacG22AY.1020.000053
N325T325AAcaGca22AY.1030.000012
N325T325IaCaaTa22AY.1080.002205
N325T325IaCaaTa22AY.1160.000574
N325T325KaCaaAa22AY.1190.000071
N325T325AAcaGca22AY.1200.000074
N325T325IaCaaTa22AY.1200.000074
N325T325IaCaaTa22AY.120.10.000642
N325T325IaCaaTa22AY.1210.000271
N325T325IaCaaTa22AY.190.002281
N325T325IaCaaTa22AY.23.10.000835
N325T325IaCaaTa22AY.270.000129
N325T325IaCaaTa22AY.34.10.00102
N325T325IaCaaTa22AY.4.40.000818
N325T325IaCaaTa22AY.4.50.000215
N325T325TacAacG22AY.430.000009
N325T325AAcaGca22AY.440.000012
N325T325IaCaaTa22AY.460.000208
N325T325IaCaaTa22AY.520.001629
N325T325del1aCaa-a22AY.520.001629
N325T325IaCaaTa22AY.590.001059
N325T325IaCaaTa22AY.610.00021
N325T325IaCaaTa22AY.690.000373
N325T325IaCaaTa22AY.75.10.000361
N325T325IaCaaTa22AY.980.000158
N325T325AAcaGca22B.10.000018
N325T325TacAacT12B.10.000009
N325T325TacAacG12B.10.000009
N325T325delACA---22B.1.10.000036
N325T325IaCaaTa22B.1.1.10.000653
N325T325IaCaaTa22B.1.1.3770.002762
N325T325IaCaaTa22B.1.1.4480.004065
N325T325TacAacT22B.1.1.700.000682
N325T325IaCaaTa22B.1.1310.017544
N325T325del1aCaa-a22B.1.1600.000062
N325T325TacAacG12B.1.1600.000031
N325T325TacAacT12B.1.1600.000031
N325T325delACA---22B.1.1770.000026
N325T325IaCaaTa22B.1.177.40.000422
N325T325IaCaaTa22B.1.177.560.001335
N325T325IaCaaTa22B.1.177.580.002663
N325T325AAcaGca22B.1.20.000018
N325T325KaCaaAa22B.1.20.000018
N325T325TacAacC22B.1.2210.000142
N325T325AAcaGca12B.1.2210.000071
N325T325AAcAGcC12B.1.2210.000071
N325T325IaCaaTa22B.1.2340.000264
N325T325TacAacG22B.1.3510.000059
N325T325IaCaaTa22B.1.36.80.002
N325T325IaCaaTa22B.1.5650.001621
N325T325IaCaaTa22B.1.5950.000522
N325T325IaCaaTa22B.1.6090.000959
N325T325KaCaaAa22B.1.617.20.000008
N325T325IaCaaTa22B.1.6230.001073
N325T325KaCaaAa22C.370.000232
N325T325RaCaaGa22P.10.000032
N325T325AAcaGca22P.1.100.000539
N325T325KaCaaAa22P.1.100.000539
N325T325IaCaaTa22P.1.160.000748
N325T325IaCaaTa11A.10.000282
N325T325IaCaaTa11A.2.50.000499
N325T325IaCaaTa11A.2.5.20.001572
N325T325delACA---11A.280.002646
N325T325IaCaaTa11AA.10.007246
N325T325RaCaaGa11AD.20.000219
N325T325HACACAT11All0
N325T325IaCaaTa11AU.10.001266
N325T325IaCaaTa11AY.1010.00049
N325T325KaCaaAa11AY.1020.000027
N325T325SAcaTca11AY.1030.000006
N325T325TacAacG11AY.1100.000113
N325T325IaCaaTa11AY.1130.000142
N325T325AAcaGca11AY.1130.000142
N325T325TacAacG11AY.1210.000135
N325T325TacAacG11AY.140.000088
N325T325IaCaaTa11AY.160.00038
N325T325AAcaGca11AY.200.000039
N325T325IaCaaTa11AY.210.001898
N325T325TacAacG11AY.230.00007
N325T325KaCaaAa11AY.250.000006
N325T325delACA---11AY.250.000006
N325T325RaCaaGa11AY.260.000028
N325T325AAcaGca11AY.270.000065
N325T325AAcaGca11AY.30.00001
N325T325delACA---11AY.30.00001
N325T325IaCaaTa11AY.3.10.000085
N325T325IaCaaTa11AY.350.000233
N325T325IaCaaTa11AY.380.000499
N325T325IaCaaTa11AY.39.10.00004
N325T325AAcaGca11AY.4.2.10.000149
N325T325delACA---11AY.440.000006
N325T325IaCaaTa11AY.46.50.000198
N325T325del1Aca-ca11AY.470.000031
N325T325SAcaTca11AY.480.000465
N325T325TacAacT11AY.50.000021
N325T325delACA---11AY.5.30.000337
N325T325TacAacT11AY.540.000095
N325T325SaCAaGC11AY.550.000917
N325T325AAcaGca11AY.560.001605
N325T325delACA---11AY.590.00053
N325T325IaCaaTa11AY.640.000595
N325T325delACA---11AY.670.000464
N325T325TacAacG11AY.680.000274
N325T325IaCaaTa11AY.70.000196
N325T325IaCaaTa11AY.700.000209
N325T325delACA---11AY.750.000056
N325T325SAcaTca11AY.750.000056
N325T325TacAacT11AY.840.000437
N325T325IaCaaTa11AY.880.000884
N325T325IaCaaTa11AY.90.000068
N325T325AAcaGca11AY.9.10.000084
N325T325IaCaaTa11AY.930.000273
N325T325AAcaGca11AY.98.10.000048
N325T325IaCaaTa11AY.99.20.000092
N325T325RaCaaGa11B.10.000009
N325T325delACA---11B.10.000009
N325T325AAcaGca11B.1.10.000018
N325T325KaCaaAa11B.1.10.000018
N325T325delACA---11B.1.1.1390.022727
N325T325KaCaaAa11B.1.1.1570.000913
N325T325IaCaaTa11B.1.1.1890.001513
N325T325IaCaaTa11B.1.1.2070.001182
N325T325IaCaaTa11B.1.1.2160.00089
N325T325IaCaaTa11B.1.1.2430.004082
N325T325RaCaaGa11B.1.1.2660.012195
N325T325SAcaTca11B.1.1.270.00565
N325T325IaCaaTa11B.1.1.280.000311
N325T325IaCaaTa11B.1.1.2800.003086
N325T325IaCaaTa11B.1.1.2840.000107
N325T325IaCaaTa11B.1.1.3110.000358
N325T325KaCaaAa11B.1.1.3120.001912
N325T325IaCaaTa11B.1.1.3170.000412
N325T325IaCaaTa11B.1.1.330.000421
N325T325IaCaaTa11B.1.1.3690.000446
N325T325IaCaaTa11B.1.1.3880.045455
N325T325IaCaaTa11B.1.1.390.00051
N325T325TacAacG11B.1.1.3970.002252
N325T325delACA---11B.1.1.4200.001006
N325T325IaCaaTa11B.1.1.4340.000349
N325T325IaCaaTa11B.1.1.4530.008475
N325T325IaCaaTa11B.1.1.510.001718
N325T325IaCaaTa11B.1.1.5230.001563
N325T325RaCaaGa11B.1.1.70.000001
N325T325delACA---11B.1.1.70.000001
N325T325KaCaaAa11B.1.1.70.000001
N325T325SAcaTca11B.1.1.70.000001
N325T325IaCaaTa11B.1.1.700.000341
N325T325IaCaaTa11B.1.1.80.003584
N325T325IaCaaTa11B.1.1110.001175
N325T325SAcaTca11B.1.1600.000031
N325T325IaCaaTa11B.1.160.90.007194
N325T325RaCaaGa11B.1.177.210.000076
N325T325IaCaaTa11B.1.177.440.000519
N325T325IaCaaTa11B.1.177.510.004566
N325T325del1aCaa-a11B.1.177.60.000977
N325T325IaCaaTa11B.1.177.620.001192
N325T325HACACAT11B.1.177.630.002703
N325T325IaCaaTa11B.1.177.820.000477
N325T325delACA---11B.1.177.830.001481
N325T325IaCaaTa11B.1.177.860.000183
N325T325IaCaaTa11B.1.1990.004132
N325T325IaCaaTa11B.1.2140.003663
N325T325IaCaaTa11B.1.230.006061
N325T325IaCaaTa11B.1.258.70.001912
N325T325KaCaaAa11B.1.3010.005917
N325T325IaCaaTa11B.1.3110.000275
N325T325IaCaaTa11B.1.3200.001245
N325T325IaCaaTa11B.1.3460.001311
N325T325IaCaaTa11B.1.3500.002933
N325T325AAcaGca11B.1.3510.00003
N325T325AAcaGca11B.1.360.000146
N325T325IaCaaTa11B.1.360.000146
N325T325del1aCaa-a11B.1.36.10.00114
N325T325IaCaaTa11B.1.36.220.001208
N325T325delACA---11B.1.36.290.000517
N325T325IaCaaTa11B.1.36.360.000602
N325T325IaCaaTa11B.1.36.390.002217
N325T325IaCaaTa11B.1.3780.006849
N325T325IaCaaTa11B.1.3910.001127
N325T325AAcaGca11B.1.3960.000706
N325T325IaCaaTa11B.1.4160.001269
N325T325IaCaaTa11B.1.4230.010204
N325T325IaCaaTa11B.1.4250.002994
N325T325del1Aca-ca11B.1.4270.00005
N325T325AAcaGca11B.1.4270.00005
N325T325IaCaaTa11B.1.4330.003195
N325T325RaCaaGa11B.1.438.10.000107
N325T325IaCaaTa11B.1.438.10.000107
N325T325IaCaaTa11B.1.517.10.005263
N325T325IaCaaTa11B.1.5250.000113
N325T325IaCaaTa11B.1.5510.00129
N325T325IaCaaTa11B.1.5620.018519
N325T325IaCaaTa11B.1.5760.000907
N325T325TacAacG11B.1.5950.000261
N325T325TacAacG11B.1.595.40.007299
N325T325delACA---11B.1.617.20.000004
N325T325IaCaaTa11B.1.6180.004032
N325T325IaCaaTa11B.1.6270.00202
N325T325IaCaaTa11B.1.6280.000352
N325T325delACA---11B.1.6300.005236
N325T325AAcaGca11B.1.6370.000073
N325T325IaCaaTa11B.1.9.50.005682
N325T325IaCaaTa11B.390.002331
N325T325IaCaaTa11C.140.004329
N325T325del1Aca-ca11C.350.000774
N325T325IaCaaTa11C.360.000911
N325T325IaCaaTa11C.36.20.034483
N325T325IaCaaTa11C.36.30.000567
N325T325IaCaaTa11C.80.004464
N325T325IaCaaTa11L.30.003546
N325T325KaCaaAa11P.10.000016
N325T325IaCaaTa11P.1.10.000318
N325T325KaCaaAa11P.1.120.000484
N325T325IaCaaTa11P.1.150.000232
N325T325IaCaaTa11P.1.170.000162
N325T325IaCaaTa11P.1.40.000977
N325T325IaCaaTa11P.1.70.000319
N325T325TacAacG11Q.30.000145
N325T325del1aCaa-a11R.10.00009