CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 32

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N32R32HnonsyncGccAc38253825128367-28369
N32R32CnonsynCgcTgc21332133128367-28369
N32R32RsyncgCcgT5305080.95849128367-28369
N32R32RsyncgCcgG530130.024528328367-28369
N32R32RsyncgCcgA53090.016981128367-28369
N32R32LnonsyncGccTc237237128367-28369
N32R32deldelCGC---3939128367-28369
N32R32SnonsynCgcAgc3232128367-28369
N32R32FnonsynCGcTTc2424128367-28369
N32R32PnonsyncGccCc540.828367-28369
N32R32PnonsyncGCcCA510.228367-28369
N32R32del1delcgCcg-320.66666728367-28369
N32R32del1delcGcc-c310.33333328367-28369
N32R32GnonsynCgcGgc22128367-28369
N32R32QnonsyncGCcAG11128367-28369
N32R32del2delCGc--c11128367-28369
N32R32YnonsynCGcTAc11128367-28369

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N32R32HcGccAc38253825All0.000732
N32R32CCgcTgc21332133All0.000408
N32R32HcGccAc12311231B.1.4221
N32R32CCgcTgc806806AY.40.001254
N32R32RcgCcgT508530All0.000097
N32R32RcgCcgG13530All0.000002
N32R32RcgCcgA9530All0.000002
N32R32CCgcTgc403403B.1.4270.02035
N32R32HcGccAc401401B.1.2210.028484
N32R32CCgcTgc291291AY.250.00175
N32R32HcGccAc262262AY.610.027452
N32R32LcGccTc237237All0.000045
N32R32HcGccAc236236B.1.617.20.000889
N32R32HcGccAc219219AY.440.001333
N32R32HcGccAc197197AY.40.000307
N32R32HcGccAc176176B.1.1.1570.160731
N32R32HcGccAc139139B.1.1.70.000124
N32R32RcgCcgT117118AY.40.000182
N32R32RcgCcgA1118AY.40.000002
N32R32RcgCcgT108110B.1.1.70.000097
N32R32RcgCcgA1110B.1.1.70.000001
N32R32RcgCcgG1110B.1.1.70.000001
N32R32CCgcTgc105105B.1.1.70.000094
N32R32HcGccAc8787B.1.177.570.024445
N32R32HcGccAc8282AZ.10.071119
N32R32HcGccAc7373AY.1030.000453
N32R32HcGccAc6969AY.140.006073
N32R32LcGccTc6262B.1.258.70.118547
N32R32RcgCcgT5353B.1.4270.002676
N32R32RcgCcgT4949B.1.617.20.000185
N32R32HcGccAc4848B.10.00044
N32R32CCgcTgc4747B.1.617.20.000177
N32R32CCgcTgc4545AY.30.000448
N32R32HcGccAc4545B.1.3050.096774
N32R32delCGC---3939All0.000007
N32R32CCgcTgc3838B.1.6370.002777
N32R32LcGccTc3333B.1.1.5250.180328
N32R32SCgcAgc3232All0.000006
N32R32CCgcTgc3030B.10.000275
N32R32HcGccAc2929AY.50.000599
N32R32HcGccAc2727B.1.20.000238
N32R32HcGccAc2727B.1.4290.000635
N32R32HcGccAc2727B.1.5260.000635
N32R32CCgcTgc2525AY.39.10.00099
N32R32FCGcTTc2424All0.000005
N32R32FCGcTTc2424B.1.2210.001705
N32R32CCgcTgc2121AY.1190.000741
N32R32CCgcTgc2121AY.390.000519
N32R32HcGccAc2020AY.75.10.003606
N32R32HcGccAc1919AY.250.000114
N32R32CCgcTgc1919AY.430.000084
N32R32LcGccTc1919B.1.1.70.000017
N32R32HcGccAc1919B.1.36.360.011439
N32R32CCgcTgc1919B.1.4290.000447
N32R32HcGccAc1919B.1.617.10.00245
N32R32CCgcTgc1818AY.1020.000477
N32R32RcgCcgT1818AY.250.000108
N32R32HcGccAc1818B.1.1.630.006944
N32R32LcGccTc1616AY.40.000025
N32R32HcGccAc1616AY.4.40.006547
N32R32RcgCcgT1515AY.1030.000093
N32R32HcGccAc1515AY.200.000583
N32R32HcGccAc1515B.1.10.000272
N32R32CCgcTgc1313AY.260.000368
N32R32HcGccAc1313AY.30.000129
N32R32RcgCcgT1313B.1.5960.001133
N32R32RcgCcgT1213C.370.001393
N32R32RcgCcgA113C.370.000116
N32R32SCgcAgc1313P.1.150.00302
N32R32RcgCcgG1112AY.290.000174
N32R32RcgCcgT112AY.290.000016
N32R32HcGccAc1212AY.470.000373
N32R32RcgCcgT1112B.1.10.0002
N32R32RcgCcgA112B.1.10.000018
N32R32CCgcTgc1212B.1.2390.014652
N32R32HcGccAc1111AY.1020.000292
N32R32RcgCcgT1011B.10.000092
N32R32RcgCcgA111B.10.000009
N32R32CCgcTgc1111B.1.20.000097
N32R32HcGccAc1111P.10.000173
N32R32HcGccAc1010AY.290.000158
N32R32HcGccAc1010B.1.1280.006353
N32R32HcGccAc1010B.1.3510.000297
N32R32LcGccTc1010P.1.140.000478
N32R32LcGccTc99B.1.617.20.000034
N32R32LcGccTc88AY.140.000704
N32R32CCgcTgc88AY.290.000126
N32R32LcGccTc88AY.30.00008
N32R32LcGccTc88AY.430.000035
N32R32RcgCcgT88B.1.1.2220.001632
N32R32HcGccAc88B.1.1.500.005431
N32R32RcgCcgT88B.1.2580.000532
N32R32HcGccAc88B.1.4270.000404
N32R32CCgcTgc88B.1.5260.000188
N32R32HcGccAc77AY.260.000198
N32R32LcGccTc77AY.370.002212
N32R32CCgcTgc77AY.440.000043
N32R32CCgcTgc77AY.50.000145
N32R32CCgcTgc77AY.620.00305
N32R32CCgcTgc77AY.660.007487
N32R32CCgcTgc77AY.710.003325
N32R32HcGccAc77B.1.1770.000092
N32R32LcGccTc77B.1.2210.000497
N32R32HcGccAc77B.1.3660.034146
N32R32RcgCcgT77P.10.00011
N32R32CCgcTgc77Q.10.000884
N32R32CCgcTgc66AY.1030.000037
N32R32HcGccAc66AY.1200.000223
N32R32HcGccAc66AY.430.000027
N32R32HcGccAc66AY.910.004383
N32R32HcGccAc66B.1.1.5190.000238
N32R32delCGC---66B.1.1.70.000005
N32R32RcgCcgT56B.1.1600.000156
N32R32RcgCcgG16B.1.1600.000031
N32R32HcGccAc66B.1.4590.02449
N32R32CCgcTgc66P.10.000095
N32R32PcGccCc45All0.000001
N32R32PcGCcCA15All0
N32R32HcGccAc55AY.1000.00023
N32R32CCgcTgc55AY.1000.00023
N32R32LcGccTc55AY.1020.000133
N32R32CCgcTgc55AY.200.000194
N32R32HcGccAc55AY.4.20.000108
N32R32CCgcTgc55AY.640.002976
N32R32HcGccAc55AY.710.002375
N32R32CCgcTgc55B.1.1.280.001556
N32R32CCgcTgc55B.1.3750.004098
N32R32CCgcTgc55B.1.4130.021277
N32R32HcGccAc55B.1.4480.013123
N32R32HcGccAc55B.60.00455
N32R32SCgcAgc44AY.10.001583
N32R32HcGccAc44AY.270.000259
N32R32SCgcAgc44AY.30.00004
N32R32CCgcTgc44AY.420.000161
N32R32HcGccAc44AY.420.000161
N32R32CCgcTgc44AY.460.000416
N32R32CCgcTgc44AY.470.000124
N32R32delCGC---44AY.50.000083
N32R32RcgCcgT44AY.50.000083
N32R32RcgCcgT44AY.5.40.001107
N32R32CCgcTgc44AY.540.000381
N32R32HcGccAc44AY.860.00332
N32R32LcGccTc44B0.000511
N32R32LcGccTc44B.10.000037
N32R32RcgCcgT44B.1.1.4160.00362
N32R32CCgcTgc44B.1.1.4340.001394
N32R32CCgcTgc44B.1.1.5190.000159
N32R32SCgcAgc44B.1.1.70.000004
N32R32LcGccTc44B.1.5700.011765
N32R32HcGccAc44C.110.042553
N32R32del1cgCcg-23All0
N32R32del1cGcc-c13All0
N32R32HcGccAc33AY.1100.000338
N32R32HcGccAc33AY.1130.000427
N32R32HcGccAc33AY.240.001293
N32R32RcgCcgT33AY.30.00003
N32R32RcgCcgT23AY.34.10.00102
N32R32RcgCcgA13AY.34.10.00051
N32R32HcGccAc33AY.390.000074
N32R32LcGccTc33AY.4.20.000065
N32R32delCGC---33AY.430.000013
N32R32RcgCcgT33AY.440.000018
N32R32RcgCcgT33AY.470.000093
N32R32HcGccAc33AY.540.000286
N32R32CCgcTgc33AY.610.000314
N32R32HcGccAc33AY.620.001307
N32R32HcGccAc33AY.870.002498
N32R32HcGccAc33B.1.1.3480.002389
N32R32RcgCcgT33B.1.1.5190.000119
N32R32LcGccTc33B.1.1770.00004
N32R32CCgcTgc33B.1.1770.00004
N32R32HcGccAc33B.1.177.600.000655
N32R32RcgCcgT33B.1.20.000026
N32R32HcGccAc33B.1.2580.0002
N32R32HcGccAc33B.1.619.10.001924
N32R32RcgCcgT33C.350.002322
N32R32RcgCcgT33N.100.088235
N32R32CCgcTgc33Q.20.00184
N32R32HcGccAc33R.10.00027
N32R32HcGccAc22A.23.10.001408
N32R32GCgcGgc22All0
N32R32RcgCcgT22AY.1000.000092
N32R32LcGccTc22AY.1030.000012
N32R32LcGccTc22AY.1170.000169
N32R32CCgcTgc22AY.1180.000125
N32R32HcGccAc22AY.130.000322
N32R32CCgcTgc22AY.130.000322
N32R32LcGccTc22AY.20.000712
N32R32HcGccAc22AY.230.000139
N32R32delCGC---22AY.230.000139
N32R32RcgCcgT22AY.260.000057
N32R32RcgCcgT22AY.350.000466
N32R32LcGccTc22AY.390.000049
N32R32delCGC---22AY.40.000003
N32R32SCgcAgc22AY.4.20.000043
N32R32CCgcTgc22AY.4.20.000043
N32R32delCGC---22AY.4.40.000818
N32R32LcGccTc22AY.440.000012
N32R32RcgCcgT22AY.450.000243
N32R32delCGC---22AY.460.000208
N32R32LcGccTc22AY.46.40.000329
N32R32HcGccAc22AY.550.001835
N32R32HcGccAc22AY.590.001059
N32R32HcGccAc22AY.650.001066
N32R32CCgcTgc22AY.650.001066
N32R32RcgCcgT22AY.9.20.000073
N32R32CCgcTgc22B0.000256
N32R32CCgcTgc22B.1.10.000036
N32R32HcGccAc22B.1.1.3180.000604
N32R32RcgCcgT22B.1.1770.000026
N32R32CCgcTgc22B.1.177.40.000422
N32R32CCgcTgc22B.1.177.440.001038
N32R32CCgcTgc22B.1.177.600.000437
N32R32HcGccAc22B.1.2430.000139
N32R32CCgcTgc22B.1.258.170.000208
N32R32CCgcTgc22B.1.3130.013158
N32R32CCgcTgc22B.1.4970.00063
N32R32HcGccAc22B.1.5960.000174
N32R32HcGccAc22B.1.6090.000959
N32R32delCGC---22B.1.617.20.000008
N32R32PcGccCc22B.1.617.20.000008
N32R32HcGccAc22B.1.6190.001742
N32R32HcGccAc22B.1.6210.000177
N32R32RcgCcgT22B.1.6390.043478
N32R32HcGccAc22B.1.930.001867
N32R32HcGccAc22B.350.015625
N32R32HcGccAc22P.1.140.000096
N32R32HcGccAc22P.1.150.000465
N32R32CCgcTgc11A.10.000282
N32R32HcGccAc11A.2.40.003367
N32R32CCgcTgc11A.2.50.000499
N32R32QcGCcAG11All0
N32R32YCGcTAc11All0
N32R32del2CGc--c11All0
N32R32HcGccAc11AP.10.001502
N32R32HcGccAc11AY.100.00053
N32R32CCgcTgc11AY.1060.000335
N32R32CCgcTgc11AY.1090.00074
N32R32CCgcTgc11AY.1100.000113
N32R32RcgCcgA11AY.1130.000142
N32R32CCgcTgc11AY.1130.000142
N32R32CCgcTgc11AY.1140.000231
N32R32HcGccAc11AY.1170.000085
N32R32CCgcTgc11AY.1170.000085
N32R32HcGccAc11AY.1180.000063
N32R32del2CGc--c11AY.1180.000063
N32R32RcgCcgT11AY.1180.000063
N32R32HcGccAc11AY.1190.000035
N32R32delCGC---11AY.1200.000037
N32R32CCgcTgc11AY.1200.000037
N32R32LcGccTc11AY.1200.000037
N32R32HcGccAc11AY.1210.000135
N32R32HcGccAc11AY.160.00038
N32R32HcGccAc11AY.16.10.00047
N32R32CCgcTgc11AY.16.10.00047
N32R32HcGccAc11AY.190.00114
N32R32RcgCcgA11AY.200.000039
N32R32RcgCcgT11AY.230.00007
N32R32del1cgCcg-11AY.30.00001
N32R32RcgCcgT11AY.3.10.000085
N32R32delCGC---11AY.300.000396
N32R32HcGccAc11AY.320.000532
N32R32HcGccAc11AY.34.10.00051
N32R32CCgcTgc11AY.350.000233
N32R32RcgCcgT11AY.360.000148
N32R32HcGccAc11AY.360.000148
N32R32CCgcTgc11AY.370.000316
N32R32RcgCcgT11AY.390.000025
N32R32HcGccAc11AY.39.10.00004
N32R32del1cgCcg-11AY.40.000002
N32R32RcgCcgT11AY.4.20.000022
N32R32HcGccAc11AY.410.000294
N32R32LcGccTc11AY.420.00004
N32R32RcgCcgT11AY.430.000004
N32R32HcGccAc11AY.460.000104
N32R32RcgCcgA11AY.460.000104
N32R32CCgcTgc11AY.46.10.001027
N32R32CCgcTgc11AY.46.40.000165
N32R32delCGC---11AY.46.60.000072
N32R32LcGccTc11AY.46.60.000072
N32R32HcGccAc11AY.46.60.000072
N32R32LcGccTc11AY.470.000031
N32R32PcGccCc11AY.470.000031
N32R32delCGC---11AY.5.30.000337
N32R32HcGccAc11AY.570.000656
N32R32delCGC---11AY.600.000938
N32R32HcGccAc11AY.640.000595
N32R32LcGccTc11AY.650.000533
N32R32RcgCcgT11AY.670.000464
N32R32HcGccAc11AY.690.000187
N32R32CCgcTgc11AY.700.000209
N32R32HcGccAc11AY.750.000056
N32R32CCgcTgc11AY.750.000056
N32R32delCGC---11AY.75.10.00018
N32R32PcGCcCA11AY.75.10.00018
N32R32HcGccAc11AY.80.000606
N32R32RcgCcgT11AY.840.000437
N32R32delCGC---11AY.9.10.000084
N32R32CCgcTgc11AY.9.10.000084
N32R32CCgcTgc11AY.9.20.000037
N32R32SCgcAgc11AY.930.000273
N32R32CCgcTgc11AY.950.000761
N32R32HcGccAc11AY.950.000761
N32R32HcGccAc11AY.980.000079
N32R32LcGccTc11AY.980.000079
N32R32GCgcGgc11AY.980.000079
N32R32HcGccAc11AY.98.10.000048
N32R32HcGccAc11B0.000128
N32R32delCGC---11B.10.000009
N32R32PcGccCc11B.10.000009
N32R32del1cGcc-c11B.1.10.000018
N32R32delCGC---11B.1.10.000018
N32R32LcGccTc11B.1.10.000018
N32R32RcgCcgT11B.1.1.1350.004695
N32R32delCGC---11B.1.1.1390.022727
N32R32RcgCcgT11B.1.1.1680.026316
N32R32HcGccAc11B.1.1.1760.000439
N32R32HcGccAc11B.1.1.1890.001513
N32R32CCgcTgc11B.1.1.1920.002309
N32R32CCgcTgc11B.1.1.2000.007463
N32R32CCgcTgc11B.1.1.2140.000055
N32R32delCGC---11B.1.1.2160.00089
N32R32CCgcTgc11B.1.1.2160.00089
N32R32CCgcTgc11B.1.1.2200.001859
N32R32CCgcTgc11B.1.1.250.000569
N32R32HcGccAc11B.1.1.280.000311
N32R32CCgcTgc11B.1.1.2940.001266
N32R32SCgcAgc11B.1.1.3060.000438
N32R32HcGccAc11B.1.1.3110.000358
N32R32RcgCcgT11B.1.1.3170.000412
N32R32SCgcAgc11B.1.1.3180.000302
N32R32CCgcTgc11B.1.1.330.000421
N32R32HcGccAc11B.1.1.3620.005618
N32R32RcgCcgT11B.1.1.370.000193
N32R32HcGccAc11B.1.1.370.000193
N32R32RcgCcgT11B.1.1.3780.007299
N32R32delCGC---11B.1.1.4200.001006
N32R32HcGccAc11B.1.1.4340.000349
N32R32HcGccAc11B.1.1.4400.011765
N32R32CCgcTgc11B.1.1.4640.001473
N32R32YCGcTAc11B.1.1.70.000001
N32R32CCgcTgc11B.1.1260.001276
N32R32HcGccAc11B.1.1310.008772
N32R32CCgcTgc11B.1.1570.002985
N32R32HcGccAc11B.1.160.100.008065
N32R32CCgcTgc11B.1.177.200.001517
N32R32LcGccTc11B.1.177.230.003236
N32R32CCgcTgc11B.1.177.340.052632
N32R32HcGccAc11B.1.177.40.000211
N32R32CCgcTgc11B.1.177.430.001477
N32R32delCGC---11B.1.177.630.002703
N32R32HcGccAc11B.1.177.70.000165
N32R32LcGccTc11B.1.177.70.000165
N32R32HcGccAc11B.1.177.750.001041
N32R32delCGC---11B.1.177.750.001041
N32R32CCgcTgc11B.1.177.860.000183
N32R32LcGccTc11B.1.20.000009
N32R32GCgcGgc11B.1.20.000009
N32R32CCgcTgc11B.1.2100.002132
N32R32CCgcTgc11B.1.214.20.0006
N32R32delCGC---11B.1.2210.000071
N32R32SCgcAgc11B.1.221.30.000833
N32R32CCgcTgc11B.1.2230.002778
N32R32RcgCcgT11B.1.230.006061
N32R32CCgcTgc11B.1.2340.000132
N32R32HcGccAc11B.1.2340.000132
N32R32CCgcTgc11B.1.2400.000216
N32R32HcGccAc11B.1.2400.000216
N32R32CCgcTgc11B.1.2580.000067
N32R32LcGccTc11B.1.2580.000067
N32R32CCgcTgc11B.1.258.210.007752
N32R32LcGccTc11B.1.3510.00003
N32R32RcgCcgT11B.1.3510.00003
N32R32HcGccAc11B.1.36.10.00114
N32R32RcgCcgT11B.1.3690.000285
N32R32LcGccTc11B.1.4080.00369
N32R32delCGC---11B.1.4390.005917
N32R32CCgcTgc11B.1.4520.013699
N32R32RcgCcgT11B.1.466.20.000391
N32R32RcgCcgT11B.1.4710.002732
N32R32HcGccAc11B.1.4870.019608
N32R32HcGccAc11B.1.4970.000315
N32R32RcgCcgT11B.1.4970.000315
N32R32HcGccAc11B.1.5090.000866
N32R32HcGccAc11B.1.5250.000113
N32R32RcgCcgT11B.1.5260.000024
N32R32HcGccAc11B.1.5550.022222
N32R32HcGccAc11B.1.5640.000426
N32R32CCgcTgc11B.1.5650.00081
N32R32HcGccAc11B.1.5950.000261
N32R32CCgcTgc11B.1.6090.000479
N32R32RcgCcgT11B.1.617.10.000129
N32R32SCgcAgc11B.1.617.20.000004
N32R32QcGCcAG11B.1.617.20.000004
N32R32CCgcTgc11B.1.6210.000089
N32R32RcgCcgT11B.1.621.10.000506
N32R32HcGccAc11B.1.6230.000536
N32R32CCgcTgc11B.1.6310.003367
N32R32HcGccAc11B.1.6370.000073
N32R32CCgcTgc11B.1.930.000934
N32R32CCgcTgc11B.390.002331
N32R32CCgcTgc11B.6.60.000889
N32R32LcGccTc11B.6.80.008264
N32R32CCgcTgc11C.350.000774
N32R32LcGccTc11D.20.000075
N32R32CCgcTgc11N.10.016949
N32R32CCgcTgc11N.50.001767
N32R32HcGccAc11N.50.001767
N32R32HcGccAc11P.1.100.000269
N32R32RcgCcgT11P.1.140.000048
N32R32HcGccAc11P.1.40.000977
N32R32HcGccAc11P.20.000187
N32R32HcGccAc11U.10.012821