CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 319 & Codon = cgT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N319R319RsyncgCcgT163416190.9908229228-29230

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N319R319RcgCcgT16191634All0.00031
N319R319RcgCcgT791792AY.250.004758
N319R319RcgCcgT146146AY.40.000227
N319R319RcgCcgT125126B.1.1.70.000112
N319R319RcgCcgT8585AY.440.000517
N319R319RcgCcgT4545B.1.1.5000.9
N319R319RcgCcgT3737B.1.2580.002462
N319R319RcgCcgT3333B.1.177.600.007208
N319R319RcgCcgT3333B.1.617.20.000124
N319R319RcgCcgT1818AY.50.000372
N319R319RcgCcgT1414B.1.1770.000184
N319R319RcgCcgT1414B.1.177.230.045307
N319R319RcgCcgT1213AY.1030.000075
N319R319RcgCcgT1212B.1.4290.000282
N319R319RcgCcgT1111B.10.000101
N319R319RcgCcgT910AY.30.00009
N319R319RcgCcgT1010AY.390.000247
N319R319RcgCcgT99AY.1210.001218
N319R319RcgCcgT89AY.430.000035
N319R319RcgCcgT99B.1.20.000079
N319R319RcgCcgT78AY.290.00011
N319R319RcgCcgT88AY.750.000448
N319R319RcgCcgT88AY.940.003541
N319R319RcgCcgT88B.1.5260.000188
N319R319RcgCcgT77B.1.5950.001827
N319R319RcgCcgT77B.1.5960.00061
N319R319RcgCcgT66AY.1170.000507
N319R319RcgCcgT56AY.4.20.000108
N319R319RcgCcgT66B.1.10.000109
N319R319RcgCcgT66P.10.000095
N319R319RcgCcgT44AY.950.003044
N319R319RcgCcgT44B.1.1600.000125
N319R319RcgCcgT44B.1.177.120.000607
N319R319RcgCcgT44B.1.5250.000453
N319R319RcgCcgT44B.1.5900.018182
N319R319RcgCcgT330.166667
N319R319RcgCcgT33AU.30.006329
N319R319RcgCcgT33AY.1000.000138
N319R319RcgCcgT33AY.200.000117
N319R319RcgCcgT33AY.360.000445
N319R319RcgCcgT33AY.70.000588
N319R319RcgCcgT33B.1.1.5190.000119
N319R319RcgCcgT33B.1.177.860.00055
N319R319RcgCcgT23B.1.3510.000059
N319R319RcgCcgT33D.20.000225
N319R319RcgCcgT22AY.1020.000053
N319R319RcgCcgT22AY.1090.001479
N319R319RcgCcgT22AY.1100.000225
N319R319RcgCcgT22AY.140.000176
N319R319RcgCcgT22AY.230.000139
N319R319RcgCcgT22AY.260.000057
N319R319RcgCcgT22AY.39.10.000079
N319R319RcgCcgT22AY.420.00008
N319R319RcgCcgT22AY.450.000243
N319R319RcgCcgT22AY.460.000208
N319R319RcgCcgT22AY.540.000191
N319R319RcgCcgT22AY.580.001815
N319R319RcgCcgT22B.1.1.280.000622
N319R319RcgCcgT22B.1.1.390.001019
N319R319RcgCcgT22B.1.5750.000607
N319R319RcgCcgT22B.1.6370.000146
N319R319RcgCcgT22C.380.016129
N319R319RcgCcgT22P.1.140.000096
N319R319RcgCcgT11A0.000387
N319R319RcgCcgT11A.30.002096
N319R319RcgCcgT11AD.20.000219
N319R319RcgCcgT11AY.1040.001984
N319R319RcgCcgT11AY.1130.000142
N319R319RcgCcgT11AY.120.000316
N319R319RcgCcgT11AY.120.2.10.000498
N319R319RcgCcgT11AY.240.000431
N319R319RcgCcgT11AY.29.10.000221
N319R319RcgCcgT11AY.3.10.000085
N319R319RcgCcgT11AY.330.000067
N319R319RcgCcgT11AY.340.000097
N319R319RcgCcgT11AY.4.2.10.000149
N319R319RcgCcgT11AY.5.40.000277
N319R319RcgCcgT11AY.610.000105
N319R319RcgCcgT11AY.680.000274
N319R319RcgCcgT11AY.710.000475
N319R319RcgCcgT11AY.890.004902
N319R319RcgCcgT11AY.900.000684
N319R319RcgCcgT11AY.980.000079
N319R319RcgCcgT11AY.98.10.000048
N319R319RcgCcgT11B0.000128
N319R319RcgCcgT11B.1.1.1170.009709
N319R319RcgCcgT11B.1.1.3060.000438
N319R319RcgCcgT11B.1.1.3180.000302
N319R319RcgCcgT11B.1.1.410.006329
N319R319RcgCcgT11B.1.1.500.000679
N319R319RcgCcgT11B.1.177.210.000076
N319R319RcgCcgT11B.1.177.400.005155
N319R319RcgCcgT11B.1.214.20.0006
N319R319RcgCcgT11B.1.2400.000216
N319R319RcgCcgT11B.1.2430.00007
N319R319RcgCcgT11B.1.258.20.004505
N319R319RcgCcgT11B.1.2890.00266
N319R319RcgCcgT11B.1.36.160.001425
N319R319RcgCcgT11B.1.3800.006623
N319R319RcgCcgT11B.1.3980.002976
N319R319RcgCcgT11B.1.466.20.000391
N319R319RcgCcgT11B.1.6230.000536
N319R319RcgCcgT11B.1.80.001972
N319R319RcgCcgT11B.50.038462
N319R319RcgCcgT11N.40.004255
N319R319RcgCcgT11P.1.70.000319
N319R319RcgCcgT11Q.80.000165
N319R319RcgCcgT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.