CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 319 & Codon = cAc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N319R319HnonsyncGccAc156015570.99807729228-29230

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N319R319HcGccAc15571560All0.000298
N319R319HcGccAc240240B.1.617.20.000904
N319R319HcGccAc237237B.1.177.800.453155
N319R319HcGccAc189189B.1.1.70.000169
N319R319HcGccAc181181AY.40.000282
N319R319HcGccAc120120AY.430.000532
N319R319HcGccAc7575AY.1020.001989
N319R319HcGccAc6567AY.250.000391
N319R319HcGccAc5555AY.30.000547
N319R319HcGccAc2121AY.440.000128
N319R319HcGccAc2020AY.99.20.001843
N319R319HcGccAc1818AY.1200.000669
N319R319HcGccAc1717B.1.20.00015
N319R319HcGccAc1717B.1.930.015873
N319R319HcGccAc1414AY.390.000346
N319R319HcGccAc1212AY.50.000248
N319R319HcGccAc1212B.1.5250.001358
N319R319HcGccAc1111AY.980.000869
N319R319HcGccAc1111B.1.2430.000765
N319R319HcGccAc1010AY.1030.000062
N319R319HcGccAc1010AY.5.30.003374
N319R319HcGccAc1010B.1.1770.000132
N319R319HcGccAc99AY.1000.000414
N319R319HcGccAc99AY.830.015517
N319R319HcGccAc99B.1.4290.000212
N319R319HcGccAc88B.1.177.350.005529
N319R319HcGccAc88B.1.5260.000188
N319R319HcGccAc77AY.200.000272
N319R319HcGccAc77P.10.00011
N319R319HcGccAc66AY.1140.001387
N319R319HcGccAc66AY.290.000095
N319R319HcGccAc66AY.330.000401
N319R319HcGccAc66AY.4.20.00013
N319R319HcGccAc66B.10.000055
N319R319HcGccAc66B.1.1600.000187
N319R319HcGccAc55AY.450.000608
N319R319HcGccAc55AY.460.00052
N319R319HcGccAc55AY.510.004545
N319R319HcGccAc55B.1.1.3550.076923
N319R319HcGccAc44AY.230.000279
N319R319HcGccAc44AY.360.000593
N319R319HcGccAc44AY.900.002738
N319R319HcGccAc44B.1.3510.000119
N319R319HcGccAc33AY.3.10.000256
N319R319HcGccAc33AY.300.001187
N319R319HcGccAc33AY.420.000121
N319R319HcGccAc33AY.920.000862
N319R319HcGccAc33D.20.000225
N319R319HcGccAc33P.1.170.000485
N319R319HcGccAc22AY.1060.00067
N319R319HcGccAc22AY.1090.001479
N319R319HcGccAc22AY.1170.000169
N319R319HcGccAc22AY.1180.000125
N319R319HcGccAc22AY.260.000057
N319R319HcGccAc22AY.270.000129
N319R319HcGccAc22AY.370.000632
N319R319HcGccAc22AY.46.60.000144
N319R319HcGccAc22AY.470.000062
N319R319HcGccAc22AY.5.40.000553
N319R319HcGccAc22B.1.1.2840.000215
N319R319HcGccAc22Q.30.00029
N319R319HcGccAc11AY.1100.000113
N319R319HcGccAc11AY.1190.000035
N319R319HcGccAc11AY.1210.000135
N319R319HcGccAc11AY.16.10.00047
N319R319HcGccAc11AY.210.001898
N319R319HcGccAc11AY.320.000532
N319R319HcGccAc11AY.340.000097
N319R319HcGccAc11AY.34.10.00051
N319R319HcGccAc11AY.580.000907
N319R319HcGccAc11AY.610.000105
N319R319HcGccAc11AY.620.000436
N319R319HcGccAc11AY.670.000464
N319R319HcGccAc11AY.700.000209
N319R319HcGccAc11AY.880.000884
N319R319HcGccAc11AY.950.000761
N319R319HcGccAc11AY.98.10.000048
N319R319HcGccAc11B.1.10.000018
N319R319HcGccAc11B.1.1.10.000327
N319R319HcGccAc11B.1.1.2160.00089
N319R319HcGccAc11B.1.1.3040.002809
N319R319HcGccAc11B.1.177.170.000821
N319R319HcGccAc11B.1.177.230.003236
N319R319HcGccAc11B.1.177.420.000894
N319R319HcGccAc11B.1.177.790.002342
N319R319HcGccAc11B.1.177.80.000752
N319R319HcGccAc11B.1.1820.007246
N319R319HcGccAc11B.1.2410.000812
N319R319HcGccAc11B.1.2580.000067
N319R319HcGccAc11B.1.360.000146
N319R319HcGccAc11B.1.3690.000285
N319R319HcGccAc11B.1.3780.006849
N319R319HcGccAc11B.1.5000.052632
N319R319HcGccAc11B.1.5640.000426
N319R319HcGccAc11B.1.595.10.005848
N319R319HcGccAc11B.1.5960.000087
N319R319HcGccAc11B.1.6210.000089
N319R319HcGccAc11C.180.002591
N319R319HcGccAc11C.370.000116
N319R319HcGccAc11P.1.100.000269
N319R319HcGccAc11P.1.60.001946
N319R319HcGccAc11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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