CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 319

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N319R319RsyncgCcgT163416190.9908229228-29230
N319R319RsyncgCcgA1634120.0073439429228-29230
N319R319RsyncgCcgG163430.0018359929228-29230
N319R319HnonsyncGccAc156015570.99807729228-29230
N319R319HnonsyncGCcAT156030.0019230829228-29230
N319R319CnonsynCgcTgc100990.9929228-29230
N319R319CnonsynCgCTgT10010.0129228-29230
N319R319SnonsynCgcAgc3333129228-29230
N319R319deldelCGC---2929129228-29230
N319R319LnonsyncGccTc28260.92857129228-29230
N319R319LnonsynCGCTTG2810.035714329228-29230
N319R319LnonsyncGCcTA2810.035714329228-29230
N319R319GnonsynCgcGgc650.83333329228-29230
N319R319del1delcGcc-c630.529228-29230
N319R319del1delcgCcg-620.33333329228-29230
N319R319del1delcGCc-T610.16666729228-29230
N319R319GnonsynCgCGgT610.16666729228-29230
N319R319PnonsyncGccCc430.7529228-29230
N319R319PnonsyncGCcCT410.2529228-29230
N319R319del2delCGc--c22129228-29230
N319R319FnonsynCGcTTc22129228-29230
N319R319AnonsynCGCGCT210.529228-29230
N319R319AnonsynCGcGCc210.529228-29230

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N319R319RcgCcgT16191634All0.00031
N319R319RcgCcgA121634All0.000002
N319R319RcgCcgG31634All0.000001
N319R319HcGccAc15571560All0.000298
N319R319HcGCcAT31560All0.000001
N319R319RcgCcgT791792AY.250.004758
N319R319RcgCcgG1792AY.250.000006
N319R319HcGccAc240240B.1.617.20.000904
N319R319HcGccAc237237B.1.177.800.453155
N319R319HcGccAc189189B.1.1.70.000169
N319R319HcGccAc181181AY.40.000282
N319R319RcgCcgT146146AY.40.000227
N319R319RcgCcgT125126B.1.1.70.000112
N319R319RcgCcgA1126B.1.1.70.000001
N319R319HcGccAc120120AY.430.000532
N319R319CCgcTgc99100All0.000019
N319R319CCgCTgT1100All0
N319R319RcgCcgT8585AY.440.000517
N319R319HcGccAc7575AY.1020.001989
N319R319HcGccAc6567AY.250.000391
N319R319HcGCcAT267AY.250.000012
N319R319HcGccAc5555AY.30.000547
N319R319RcgCcgT4545B.1.1.5000.9
N319R319RcgCcgT3737B.1.2580.002462
N319R319SCgcAgc3333All0.000006
N319R319CCgcTgc3333AY.40.000051
N319R319RcgCcgT3333B.1.177.600.007208
N319R319RcgCcgT3333B.1.617.20.000124
N319R319delCGC---2929All0.000006
N319R319LcGccTc2628All0.000005
N319R319LCGCTTG128All0
N319R319LcGCcTA128All0
N319R319HcGccAc2121AY.440.000128
N319R319HcGccAc2020AY.99.20.001843
N319R319HcGccAc1818AY.1200.000669
N319R319RcgCcgT1818AY.50.000372
N319R319HcGccAc1717B.1.20.00015
N319R319HcGccAc1717B.1.930.015873
N319R319HcGccAc1414AY.390.000346
N319R319CCgcTgc1414B.1.1.70.000013
N319R319RcgCcgT1414B.1.1770.000184
N319R319RcgCcgT1414B.1.177.230.045307
N319R319RcgCcgT1213AY.1030.000075
N319R319RcgCcgA113AY.1030.000006
N319R319SCgcAgc1212AY.1150.0625
N319R319HcGccAc1212AY.50.000248
N319R319RcgCcgT1212B.1.4290.000282
N319R319HcGccAc1212B.1.5250.001358
N319R319HcGccAc1111AY.980.000869
N319R319RcgCcgT1111B.10.000101
N319R319HcGccAc1111B.1.2430.000765
N319R319HcGccAc1010AY.1030.000062
N319R319RcgCcgT910AY.30.00009
N319R319RcgCcgA110AY.30.00001
N319R319RcgCcgT1010AY.390.000247
N319R319HcGccAc1010AY.5.30.003374
N319R319HcGccAc1010B.1.1770.000132
N319R319HcGccAc99AY.1000.000414
N319R319RcgCcgT99AY.1210.001218
N319R319RcgCcgT89AY.430.000035
N319R319RcgCcgG19AY.430.000004
N319R319HcGccAc99AY.830.015517
N319R319RcgCcgT99B.1.20.000079
N319R319HcGccAc99B.1.4290.000212
N319R319RcgCcgT78AY.290.00011
N319R319RcgCcgA18AY.290.000016
N319R319RcgCcgT88AY.750.000448
N319R319RcgCcgT88AY.940.003541
N319R319HcGccAc88B.1.177.350.005529
N319R319RcgCcgT88B.1.5260.000188
N319R319HcGccAc88B.1.5260.000188
N319R319HcGccAc77AY.200.000272
N319R319CCgcTgc77AY.30.00007
N319R319CCgcTgc77AY.430.000031
N319R319RcgCcgT77B.1.5950.001827
N319R319RcgCcgT77B.1.5960.00061
N319R319HcGccAc77P.10.00011
N319R319GCgcGgc56All0.000001
N319R319del1cGcc-c36All0.000001
N319R319del1cgCcg-26All0
N319R319GCgCGgT16All0
N319R319del1cGCc-T16All0
N319R319HcGccAc66AY.1140.001387
N319R319RcgCcgT66AY.1170.000507
N319R319HcGccAc66AY.290.000095
N319R319HcGccAc66AY.330.000401
N319R319HcGccAc66AY.4.20.00013
N319R319RcgCcgT56AY.4.20.000108
N319R319RcgCcgA16AY.4.20.000022
N319R319HcGccAc66B.10.000055
N319R319RcgCcgT66B.1.10.000109
N319R319HcGccAc66B.1.1600.000187
N319R319CCgcTgc66B.1.617.20.000023
N319R319RcgCcgT66P.10.000095
N319R319LcGccTc55AY.40.000008
N319R319HcGccAc55AY.450.000608
N319R319SCgcAgc55AY.460.00052
N319R319HcGccAc55AY.460.00052
N319R319HcGccAc55AY.510.004545
N319R319HcGccAc55B.1.1.3550.076923
N319R319delCGC---55B.1.1.70.000004
N319R319PcGccCc34All0.000001
N319R319PcGCcCT14All0
N319R319HcGccAc44AY.230.000279
N319R319CCgcTgc44AY.250.000024
N319R319HcGccAc44AY.360.000593
N319R319HcGccAc44AY.900.002738
N319R319RcgCcgT44AY.950.003044
N319R319RcgCcgT44B.1.1600.000125
N319R319RcgCcgT44B.1.177.120.000607
N319R319HcGccAc44B.1.3510.000119
N319R319RcgCcgT44B.1.5250.000453
N319R319RcgCcgT44B.1.5900.018182
N319R319RcgCcgT330.166667
N319R319RcgCcgT33AU.30.006329
N319R319RcgCcgT33AY.1000.000138
N319R319RcgCcgT33AY.200.000117
N319R319HcGccAc33AY.3.10.000256
N319R319HcGccAc33AY.300.001187
N319R319RcgCcgT33AY.360.000445
N319R319HcGccAc33AY.420.000121
N319R319delCGC---33AY.430.000013
N319R319RcgCcgT33AY.70.000588
N319R319HcGccAc33AY.920.000862
N319R319delCGC---33B.1.10.000054
N319R319RcgCcgT33B.1.1.5190.000119
N319R319del1cgCcg-23B.1.1.70.000002
N319R319del1cGcc-c13B.1.1.70.000001
N319R319LcGccTc33B.1.1770.00004
N319R319delCGC---33B.1.1770.00004
N319R319RcgCcgT33B.1.177.860.00055
N319R319CCgcTgc33B.1.20.000026
N319R319RcgCcgT23B.1.3510.000059
N319R319RcgCcgA13B.1.3510.00003
N319R319SCgcAgc33B.1.617.20.000011
N319R319HcGccAc33D.20.000225
N319R319RcgCcgT33D.20.000225
N319R319HcGccAc33P.1.170.000485
N319R319PcGccCc120.055556
N319R319PcGCcCT120.055556
N319R319ACGcGCc120.055556
N319R319ACGCGCT120.055556
N319R319GCgCGgT120.055556
N319R319GCgcGgc120.055556
N319R319CCgcTgc22A.270.003311
N319R319FCGcTTc22All0
N319R319del2CGc--c22All0
N319R319ACGCGCT12All0
N319R319ACGcGCc12All0
N319R319RcgCcgT22AY.1020.000053
N319R319HcGccAc22AY.1060.00067
N319R319HcGccAc22AY.1090.001479
N319R319RcgCcgT22AY.1090.001479
N319R319RcgCcgT22AY.1100.000225
N319R319SCgcAgc22AY.1160.000574
N319R319SCgcAgc22AY.1170.000169
N319R319HcGccAc22AY.1170.000169
N319R319HcGccAc22AY.1180.000125
N319R319RcgCcgT22AY.140.000176
N319R319RcgCcgT22AY.230.000139
N319R319CCgcTgc22AY.260.000057
N319R319HcGccAc22AY.260.000057
N319R319RcgCcgT22AY.260.000057
N319R319HcGccAc22AY.270.000129
N319R319HcGccAc22AY.370.000632
N319R319RcgCcgT22AY.39.10.000079
N319R319RcgCcgT22AY.420.00008
N319R319CCgcTgc22AY.420.00008
N319R319CCgcTgc22AY.440.000012
N319R319RcgCcgT22AY.450.000243
N319R319RcgCcgT22AY.460.000208
N319R319HcGccAc22AY.46.60.000144
N319R319RcgCcgA22AY.470.000062
N319R319HcGccAc22AY.470.000062
N319R319HcGccAc22AY.5.40.000553
N319R319RcgCcgT22AY.540.000191
N319R319RcgCcgT22AY.580.001815
N319R319CCgcTgc22B.10.000018
N319R319GCgcGgc22B.1.1.250.001137
N319R319RcgCcgT22B.1.1.280.000622
N319R319HcGccAc22B.1.1.2840.000215
N319R319RcgCcgT22B.1.1.390.001019
N319R319LcGccTc22B.1.1.70.000002
N319R319CCgcTgc22B.1.3510.000059
N319R319RcgCcgT22B.1.5750.000607
N319R319LcGccTc22B.1.617.20.000008
N319R319RcgCcgT22B.1.6370.000146
N319R319RcgCcgT22C.380.016129
N319R319RcgCcgT22P.1.140.000096
N319R319HcGccAc22Q.30.00029
N319R319RcgCcgA22Q.40.00091
N319R319LcGccTc110.055556
N319R319FCGcTTc110.055556
N319R319CCgcTgc110.055556
N319R319RcgCcgT11A0.000387
N319R319RcgCcgT11A.30.002096
N319R319RcgCcgT11AD.20.000219
N319R319CCgcTgc11AY.1020.000027
N319R319delCGC---11AY.1020.000027
N319R319CCgcTgc11AY.1030.000006
N319R319LcGccTc11AY.1030.000006
N319R319RcgCcgT11AY.1040.001984
N319R319HcGccAc11AY.1100.000113
N319R319RcgCcgT11AY.1130.000142
N319R319RcgCcgG11AY.1180.000063
N319R319HcGccAc11AY.1190.000035
N319R319CCgcTgc11AY.1190.000035
N319R319RcgCcgT11AY.120.000316
N319R319RcgCcgT11AY.120.2.10.000498
N319R319HcGccAc11AY.1210.000135
N319R319HcGccAc11AY.16.10.00047
N319R319del2CGc--c11AY.200.000039
N319R319HcGccAc11AY.210.001898
N319R319LCGCTTG11AY.230.00007
N319R319RcgCcgT11AY.240.000431
N319R319delCGC---11AY.250.000006
N319R319RcgCcgT11AY.29.10.000221
N319R319RcgCcgT11AY.3.10.000085
N319R319HcGccAc11AY.320.000532
N319R319RcgCcgT11AY.330.000067
N319R319RcgCcgT11AY.340.000097
N319R319delCGC---11AY.340.000097
N319R319HcGccAc11AY.340.000097
N319R319HcGccAc11AY.34.10.00051
N319R319SCgcAgc11AY.390.000025
N319R319del2CGc--c11AY.40.000002
N319R319LcGccTc11AY.4.2.10.000149
N319R319RcgCcgT11AY.4.2.10.000149
N319R319LcGccTc11AY.430.000004
N319R319PcGccCc11AY.440.000006
N319R319SCgcAgc11AY.450.000122
N319R319CCgcTgc11AY.460.000104
N319R319RcgCcgT11AY.5.40.000277
N319R319HcGccAc11AY.580.000907
N319R319delCGC---11AY.590.00053
N319R319HcGccAc11AY.610.000105
N319R319RcgCcgT11AY.610.000105
N319R319HcGccAc11AY.620.000436
N319R319HcGccAc11AY.670.000464
N319R319delCGC---11AY.670.000464
N319R319RcgCcgT11AY.680.000274
N319R319SCgcAgc11AY.7.10.000113
N319R319HcGccAc11AY.700.000209
N319R319RcgCcgT11AY.710.000475
N319R319delCGC---11AY.750.000056
N319R319LcGccTc11AY.750.000056
N319R319SCgcAgc11AY.820.001357
N319R319HcGccAc11AY.880.000884
N319R319RcgCcgT11AY.890.004902
N319R319RcgCcgT11AY.900.000684
N319R319LcGccTc11AY.940.000443
N319R319HcGccAc11AY.950.000761
N319R319RcgCcgT11AY.980.000079
N319R319RcgCcgT11AY.98.10.000048
N319R319HcGccAc11AY.98.10.000048
N319R319RcgCcgT11B0.000128
N319R319delCGC---11B.10.000009
N319R319LcGccTc11B.10.000009
N319R319del1cGcc-c11B.10.000009
N319R319PcGccCc11B.10.000009
N319R319SCgcAgc11B.1.10.000018
N319R319GCgcGgc11B.1.10.000018
N319R319HcGccAc11B.1.10.000018
N319R319HcGccAc11B.1.1.10.000327
N319R319RcgCcgT11B.1.1.1170.009709
N319R319CCgCTgT11B.1.1.1390.022727
N319R319HcGccAc11B.1.1.2160.00089
N319R319CCgcTgc11B.1.1.270.00565
N319R319LcGCcTA11B.1.1.3000.010753
N319R319HcGccAc11B.1.1.3040.002809
N319R319HcGCcAT11B.1.1.3060.000438
N319R319RcgCcgT11B.1.1.3060.000438
N319R319CCgcTgc11B.1.1.3110.000358
N319R319del1cGcc-c11B.1.1.3150.008475
N319R319RcgCcgT11B.1.1.3180.000302
N319R319LcGccTc11B.1.1.3720.000689
N319R319RcgCcgT11B.1.1.410.006329
N319R319SCgcAgc11B.1.1.4110.014706
N319R319delCGC---11B.1.1.4200.001006
N319R319CCgcTgc11B.1.1.4500.034483
N319R319RcgCcgT11B.1.1.500.000679
N319R319SCgcAgc11B.1.1.700.000341
N319R319CCgcTgc11B.1.1280.000635
N319R319CCgcTgc11B.1.1770.000013
N319R319HcGccAc11B.1.177.170.000821
N319R319RcgCcgT11B.1.177.210.000076
N319R319HcGccAc11B.1.177.230.003236
N319R319RcgCcgT11B.1.177.400.005155
N319R319HcGccAc11B.1.177.420.000894
N319R319CCgcTgc11B.1.177.560.000668
N319R319FCGcTTc11B.1.177.630.002703
N319R319LcGccTc11B.1.177.730.000566
N319R319HcGccAc11B.1.177.790.002342
N319R319HcGccAc11B.1.177.80.000752
N319R319delCGC---11B.1.177.830.001481
N319R319HcGccAc11B.1.1820.007246
N319R319del1cGCc-T11B.1.20.000009
N319R319LcGccTc11B.1.20.000009
N319R319CCgcTgc11B.1.2060.000816
N319R319RcgCcgT11B.1.214.20.0006
N319R319SCgcAgc11B.1.2360.002053
N319R319RcgCcgT11B.1.2400.000216
N319R319HcGccAc11B.1.2410.000812
N319R319RcgCcgT11B.1.2430.00007
N319R319HcGccAc11B.1.2580.000067
N319R319delCGC---11B.1.258.160.001637
N319R319RcgCcgT11B.1.258.20.004505
N319R319RcgCcgT11B.1.2890.00266
N319R319HcGccAc11B.1.360.000146
N319R319RcgCcgT11B.1.36.160.001425
N319R319HcGccAc11B.1.3690.000285
N319R319HcGccAc11B.1.3780.006849
N319R319RcgCcgT11B.1.3800.006623
N319R319SCgcAgc11B.1.390.003906
N319R319RcgCcgT11B.1.3980.002976
N319R319delCGC---11B.1.4270.00005
N319R319LcGccTc11B.1.4340.052632
N319R319GCgcGgc11B.1.4590.004082
N319R319RcgCcgT11B.1.466.20.000391
N319R319HcGccAc11B.1.5000.052632
N319R319RcgCcgA11B.1.5460.003704
N319R319HcGccAc11B.1.5640.000426
N319R319HcGccAc11B.1.595.10.005848
N319R319HcGccAc11B.1.5960.000087
N319R319delCGC---11B.1.617.10.000129
N319R319LcGccTc11B.1.617.10.000129
N319R319delCGC---11B.1.617.20.000004
N319R319delCGC---11B.1.617.30.002985
N319R319HcGccAc11B.1.6210.000089
N319R319RcgCcgT11B.1.6230.000536
N319R319delCGC---11B.1.6300.005236
N319R319RcgCcgT11B.1.80.001972
N319R319RcgCcgT11B.50.038462
N319R319HcGccAc11C.180.002591
N319R319RcgCcgA11C.370.000116
N319R319HcGccAc11C.370.000116
N319R319LcGccTc11D.20.000075
N319R319CCgcTgc11D.20.000075
N319R319RcgCcgT11N.40.004255
N319R319HcGccAc11P.1.100.000269
N319R319HcGccAc11P.1.60.001946
N319R319RcgCcgT11P.1.70.000319
N319R319HcGccAc11P.20.000187
N319R319LcGccTc11Q.30.000145
N319R319RcgCcgT11Q.80.000165
N319R319RcgCcgT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.