CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 319 | R319R | syn | cgC | cgT | 1634 | 1619 | 0.99082 | 29228-29230 | |
N | 319 | R319R | syn | cgC | cgA | 1634 | 12 | 0.00734394 | 29228-29230 | |
N | 319 | R319R | syn | cgC | cgG | 1634 | 3 | 0.00183599 | 29228-29230 | |
N | 319 | R319H | nonsyn | cGc | cAc | 1560 | 1557 | 0.998077 | 29228-29230 | |
N | 319 | R319H | nonsyn | cGC | cAT | 1560 | 3 | 0.00192308 | 29228-29230 | |
N | 319 | R319C | nonsyn | Cgc | Tgc | 100 | 99 | 0.99 | 29228-29230 | |
N | 319 | R319C | nonsyn | CgC | TgT | 100 | 1 | 0.01 | 29228-29230 | |
N | 319 | R319S | nonsyn | Cgc | Agc | 33 | 33 | 1 | 29228-29230 | |
N | 319 | R319del | del | CGC | --- | 29 | 29 | 1 | 29228-29230 | |
N | 319 | R319L | nonsyn | cGc | cTc | 28 | 26 | 0.928571 | 29228-29230 | |
N | 319 | R319L | nonsyn | CGC | TTG | 28 | 1 | 0.0357143 | 29228-29230 | |
N | 319 | R319L | nonsyn | cGC | cTA | 28 | 1 | 0.0357143 | 29228-29230 | |
N | 319 | R319G | nonsyn | Cgc | Ggc | 6 | 5 | 0.833333 | 29228-29230 | |
N | 319 | R319del1 | del | cGc | c-c | 6 | 3 | 0.5 | 29228-29230 | |
N | 319 | R319del1 | del | cgC | cg- | 6 | 2 | 0.333333 | 29228-29230 | |
N | 319 | R319del1 | del | cGC | c-T | 6 | 1 | 0.166667 | 29228-29230 | |
N | 319 | R319G | nonsyn | CgC | GgT | 6 | 1 | 0.166667 | 29228-29230 | |
N | 319 | R319P | nonsyn | cGc | cCc | 4 | 3 | 0.75 | 29228-29230 | |
N | 319 | R319P | nonsyn | cGC | cCT | 4 | 1 | 0.25 | 29228-29230 | |
N | 319 | R319del2 | del | CGc | --c | 2 | 2 | 1 | 29228-29230 | |
N | 319 | R319F | nonsyn | CGc | TTc | 2 | 2 | 1 | 29228-29230 | |
N | 319 | R319A | nonsyn | CGC | GCT | 2 | 1 | 0.5 | 29228-29230 | |
N | 319 | R319A | nonsyn | CGc | GCc | 2 | 1 | 0.5 | 29228-29230 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 319 | R319R | cgC | cgT | 1619 | 1634 | All | 0.00031 |
N | 319 | R319R | cgC | cgA | 12 | 1634 | All | 0.000002 |
N | 319 | R319R | cgC | cgG | 3 | 1634 | All | 0.000001 |
N | 319 | R319H | cGc | cAc | 1557 | 1560 | All | 0.000298 |
N | 319 | R319H | cGC | cAT | 3 | 1560 | All | 0.000001 |
N | 319 | R319R | cgC | cgT | 791 | 792 | AY.25 | 0.004758 |
N | 319 | R319R | cgC | cgG | 1 | 792 | AY.25 | 0.000006 |
N | 319 | R319H | cGc | cAc | 240 | 240 | B.1.617.2 | 0.000904 |
N | 319 | R319H | cGc | cAc | 237 | 237 | B.1.177.80 | 0.453155 |
N | 319 | R319H | cGc | cAc | 189 | 189 | B.1.1.7 | 0.000169 |
N | 319 | R319H | cGc | cAc | 181 | 181 | AY.4 | 0.000282 |
N | 319 | R319R | cgC | cgT | 146 | 146 | AY.4 | 0.000227 |
N | 319 | R319R | cgC | cgT | 125 | 126 | B.1.1.7 | 0.000112 |
N | 319 | R319R | cgC | cgA | 1 | 126 | B.1.1.7 | 0.000001 |
N | 319 | R319H | cGc | cAc | 120 | 120 | AY.43 | 0.000532 |
N | 319 | R319C | Cgc | Tgc | 99 | 100 | All | 0.000019 |
N | 319 | R319C | CgC | TgT | 1 | 100 | All | 0 |
N | 319 | R319R | cgC | cgT | 85 | 85 | AY.44 | 0.000517 |
N | 319 | R319H | cGc | cAc | 75 | 75 | AY.102 | 0.001989 |
N | 319 | R319H | cGc | cAc | 65 | 67 | AY.25 | 0.000391 |
N | 319 | R319H | cGC | cAT | 2 | 67 | AY.25 | 0.000012 |
N | 319 | R319H | cGc | cAc | 55 | 55 | AY.3 | 0.000547 |
N | 319 | R319R | cgC | cgT | 45 | 45 | B.1.1.500 | 0.9 |
N | 319 | R319R | cgC | cgT | 37 | 37 | B.1.258 | 0.002462 |
N | 319 | R319S | Cgc | Agc | 33 | 33 | All | 0.000006 |
N | 319 | R319C | Cgc | Tgc | 33 | 33 | AY.4 | 0.000051 |
N | 319 | R319R | cgC | cgT | 33 | 33 | B.1.177.60 | 0.007208 |
N | 319 | R319R | cgC | cgT | 33 | 33 | B.1.617.2 | 0.000124 |
N | 319 | R319del | CGC | --- | 29 | 29 | All | 0.000006 |
N | 319 | R319L | cGc | cTc | 26 | 28 | All | 0.000005 |
N | 319 | R319L | CGC | TTG | 1 | 28 | All | 0 |
N | 319 | R319L | cGC | cTA | 1 | 28 | All | 0 |
N | 319 | R319H | cGc | cAc | 21 | 21 | AY.44 | 0.000128 |
N | 319 | R319H | cGc | cAc | 20 | 20 | AY.99.2 | 0.001843 |
N | 319 | R319H | cGc | cAc | 18 | 18 | AY.120 | 0.000669 |
N | 319 | R319R | cgC | cgT | 18 | 18 | AY.5 | 0.000372 |
N | 319 | R319H | cGc | cAc | 17 | 17 | B.1.2 | 0.00015 |
N | 319 | R319H | cGc | cAc | 17 | 17 | B.1.93 | 0.015873 |
N | 319 | R319H | cGc | cAc | 14 | 14 | AY.39 | 0.000346 |
N | 319 | R319C | Cgc | Tgc | 14 | 14 | B.1.1.7 | 0.000013 |
N | 319 | R319R | cgC | cgT | 14 | 14 | B.1.177 | 0.000184 |
N | 319 | R319R | cgC | cgT | 14 | 14 | B.1.177.23 | 0.045307 |
N | 319 | R319R | cgC | cgT | 12 | 13 | AY.103 | 0.000075 |
N | 319 | R319R | cgC | cgA | 1 | 13 | AY.103 | 0.000006 |
N | 319 | R319S | Cgc | Agc | 12 | 12 | AY.115 | 0.0625 |
N | 319 | R319H | cGc | cAc | 12 | 12 | AY.5 | 0.000248 |
N | 319 | R319R | cgC | cgT | 12 | 12 | B.1.429 | 0.000282 |
N | 319 | R319H | cGc | cAc | 12 | 12 | B.1.525 | 0.001358 |
N | 319 | R319H | cGc | cAc | 11 | 11 | AY.98 | 0.000869 |
N | 319 | R319R | cgC | cgT | 11 | 11 | B.1 | 0.000101 |
N | 319 | R319H | cGc | cAc | 11 | 11 | B.1.243 | 0.000765 |
N | 319 | R319H | cGc | cAc | 10 | 10 | AY.103 | 0.000062 |
N | 319 | R319R | cgC | cgT | 9 | 10 | AY.3 | 0.00009 |
N | 319 | R319R | cgC | cgA | 1 | 10 | AY.3 | 0.00001 |
N | 319 | R319R | cgC | cgT | 10 | 10 | AY.39 | 0.000247 |
N | 319 | R319H | cGc | cAc | 10 | 10 | AY.5.3 | 0.003374 |
N | 319 | R319H | cGc | cAc | 10 | 10 | B.1.177 | 0.000132 |
N | 319 | R319H | cGc | cAc | 9 | 9 | AY.100 | 0.000414 |
N | 319 | R319R | cgC | cgT | 9 | 9 | AY.121 | 0.001218 |
N | 319 | R319R | cgC | cgT | 8 | 9 | AY.43 | 0.000035 |
N | 319 | R319R | cgC | cgG | 1 | 9 | AY.43 | 0.000004 |
N | 319 | R319H | cGc | cAc | 9 | 9 | AY.83 | 0.015517 |
N | 319 | R319R | cgC | cgT | 9 | 9 | B.1.2 | 0.000079 |
N | 319 | R319H | cGc | cAc | 9 | 9 | B.1.429 | 0.000212 |
N | 319 | R319R | cgC | cgT | 7 | 8 | AY.29 | 0.00011 |
N | 319 | R319R | cgC | cgA | 1 | 8 | AY.29 | 0.000016 |
N | 319 | R319R | cgC | cgT | 8 | 8 | AY.75 | 0.000448 |
N | 319 | R319R | cgC | cgT | 8 | 8 | AY.94 | 0.003541 |
N | 319 | R319H | cGc | cAc | 8 | 8 | B.1.177.35 | 0.005529 |
N | 319 | R319R | cgC | cgT | 8 | 8 | B.1.526 | 0.000188 |
N | 319 | R319H | cGc | cAc | 8 | 8 | B.1.526 | 0.000188 |
N | 319 | R319H | cGc | cAc | 7 | 7 | AY.20 | 0.000272 |
N | 319 | R319C | Cgc | Tgc | 7 | 7 | AY.3 | 0.00007 |
N | 319 | R319C | Cgc | Tgc | 7 | 7 | AY.43 | 0.000031 |
N | 319 | R319R | cgC | cgT | 7 | 7 | B.1.595 | 0.001827 |
N | 319 | R319R | cgC | cgT | 7 | 7 | B.1.596 | 0.00061 |
N | 319 | R319H | cGc | cAc | 7 | 7 | P.1 | 0.00011 |
N | 319 | R319G | Cgc | Ggc | 5 | 6 | All | 0.000001 |
N | 319 | R319del1 | cGc | c-c | 3 | 6 | All | 0.000001 |
N | 319 | R319del1 | cgC | cg- | 2 | 6 | All | 0 |
N | 319 | R319G | CgC | GgT | 1 | 6 | All | 0 |
N | 319 | R319del1 | cGC | c-T | 1 | 6 | All | 0 |
N | 319 | R319H | cGc | cAc | 6 | 6 | AY.114 | 0.001387 |
N | 319 | R319R | cgC | cgT | 6 | 6 | AY.117 | 0.000507 |
N | 319 | R319H | cGc | cAc | 6 | 6 | AY.29 | 0.000095 |
N | 319 | R319H | cGc | cAc | 6 | 6 | AY.33 | 0.000401 |
N | 319 | R319H | cGc | cAc | 6 | 6 | AY.4.2 | 0.00013 |
N | 319 | R319R | cgC | cgT | 5 | 6 | AY.4.2 | 0.000108 |
N | 319 | R319R | cgC | cgA | 1 | 6 | AY.4.2 | 0.000022 |
N | 319 | R319H | cGc | cAc | 6 | 6 | B.1 | 0.000055 |
N | 319 | R319R | cgC | cgT | 6 | 6 | B.1.1 | 0.000109 |
N | 319 | R319H | cGc | cAc | 6 | 6 | B.1.160 | 0.000187 |
N | 319 | R319C | Cgc | Tgc | 6 | 6 | B.1.617.2 | 0.000023 |
N | 319 | R319R | cgC | cgT | 6 | 6 | P.1 | 0.000095 |
N | 319 | R319L | cGc | cTc | 5 | 5 | AY.4 | 0.000008 |
N | 319 | R319H | cGc | cAc | 5 | 5 | AY.45 | 0.000608 |
N | 319 | R319S | Cgc | Agc | 5 | 5 | AY.46 | 0.00052 |
N | 319 | R319H | cGc | cAc | 5 | 5 | AY.46 | 0.00052 |
N | 319 | R319H | cGc | cAc | 5 | 5 | AY.51 | 0.004545 |
N | 319 | R319H | cGc | cAc | 5 | 5 | B.1.1.355 | 0.076923 |
N | 319 | R319del | CGC | --- | 5 | 5 | B.1.1.7 | 0.000004 |
N | 319 | R319P | cGc | cCc | 3 | 4 | All | 0.000001 |
N | 319 | R319P | cGC | cCT | 1 | 4 | All | 0 |
N | 319 | R319H | cGc | cAc | 4 | 4 | AY.23 | 0.000279 |
N | 319 | R319C | Cgc | Tgc | 4 | 4 | AY.25 | 0.000024 |
N | 319 | R319H | cGc | cAc | 4 | 4 | AY.36 | 0.000593 |
N | 319 | R319H | cGc | cAc | 4 | 4 | AY.90 | 0.002738 |
N | 319 | R319R | cgC | cgT | 4 | 4 | AY.95 | 0.003044 |
N | 319 | R319R | cgC | cgT | 4 | 4 | B.1.160 | 0.000125 |
N | 319 | R319R | cgC | cgT | 4 | 4 | B.1.177.12 | 0.000607 |
N | 319 | R319H | cGc | cAc | 4 | 4 | B.1.351 | 0.000119 |
N | 319 | R319R | cgC | cgT | 4 | 4 | B.1.525 | 0.000453 |
N | 319 | R319R | cgC | cgT | 4 | 4 | B.1.590 | 0.018182 |
N | 319 | R319R | cgC | cgT | 3 | 3 | 0.166667 | |
N | 319 | R319R | cgC | cgT | 3 | 3 | AU.3 | 0.006329 |
N | 319 | R319R | cgC | cgT | 3 | 3 | AY.100 | 0.000138 |
N | 319 | R319R | cgC | cgT | 3 | 3 | AY.20 | 0.000117 |
N | 319 | R319H | cGc | cAc | 3 | 3 | AY.3.1 | 0.000256 |
N | 319 | R319H | cGc | cAc | 3 | 3 | AY.30 | 0.001187 |
N | 319 | R319R | cgC | cgT | 3 | 3 | AY.36 | 0.000445 |
N | 319 | R319H | cGc | cAc | 3 | 3 | AY.42 | 0.000121 |
N | 319 | R319del | CGC | --- | 3 | 3 | AY.43 | 0.000013 |
N | 319 | R319R | cgC | cgT | 3 | 3 | AY.7 | 0.000588 |
N | 319 | R319H | cGc | cAc | 3 | 3 | AY.92 | 0.000862 |
N | 319 | R319del | CGC | --- | 3 | 3 | B.1.1 | 0.000054 |
N | 319 | R319R | cgC | cgT | 3 | 3 | B.1.1.519 | 0.000119 |
N | 319 | R319del1 | cgC | cg- | 2 | 3 | B.1.1.7 | 0.000002 |
N | 319 | R319del1 | cGc | c-c | 1 | 3 | B.1.1.7 | 0.000001 |
N | 319 | R319L | cGc | cTc | 3 | 3 | B.1.177 | 0.00004 |
N | 319 | R319del | CGC | --- | 3 | 3 | B.1.177 | 0.00004 |
N | 319 | R319R | cgC | cgT | 3 | 3 | B.1.177.86 | 0.00055 |
N | 319 | R319C | Cgc | Tgc | 3 | 3 | B.1.2 | 0.000026 |
N | 319 | R319R | cgC | cgT | 2 | 3 | B.1.351 | 0.000059 |
N | 319 | R319R | cgC | cgA | 1 | 3 | B.1.351 | 0.00003 |
N | 319 | R319S | Cgc | Agc | 3 | 3 | B.1.617.2 | 0.000011 |
N | 319 | R319H | cGc | cAc | 3 | 3 | D.2 | 0.000225 |
N | 319 | R319R | cgC | cgT | 3 | 3 | D.2 | 0.000225 |
N | 319 | R319H | cGc | cAc | 3 | 3 | P.1.17 | 0.000485 |
N | 319 | R319P | cGc | cCc | 1 | 2 | 0.055556 | |
N | 319 | R319P | cGC | cCT | 1 | 2 | 0.055556 | |
N | 319 | R319A | CGc | GCc | 1 | 2 | 0.055556 | |
N | 319 | R319A | CGC | GCT | 1 | 2 | 0.055556 | |
N | 319 | R319G | CgC | GgT | 1 | 2 | 0.055556 | |
N | 319 | R319G | Cgc | Ggc | 1 | 2 | 0.055556 | |
N | 319 | R319C | Cgc | Tgc | 2 | 2 | A.27 | 0.003311 |
N | 319 | R319F | CGc | TTc | 2 | 2 | All | 0 |
N | 319 | R319del2 | CGc | --c | 2 | 2 | All | 0 |
N | 319 | R319A | CGC | GCT | 1 | 2 | All | 0 |
N | 319 | R319A | CGc | GCc | 1 | 2 | All | 0 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.102 | 0.000053 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.106 | 0.00067 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.109 | 0.001479 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.109 | 0.001479 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.110 | 0.000225 |
N | 319 | R319S | Cgc | Agc | 2 | 2 | AY.116 | 0.000574 |
N | 319 | R319S | Cgc | Agc | 2 | 2 | AY.117 | 0.000169 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.117 | 0.000169 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.118 | 0.000125 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.14 | 0.000176 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.23 | 0.000139 |
N | 319 | R319C | Cgc | Tgc | 2 | 2 | AY.26 | 0.000057 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.26 | 0.000057 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.26 | 0.000057 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.27 | 0.000129 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.37 | 0.000632 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.39.1 | 0.000079 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.42 | 0.00008 |
N | 319 | R319C | Cgc | Tgc | 2 | 2 | AY.42 | 0.00008 |
N | 319 | R319C | Cgc | Tgc | 2 | 2 | AY.44 | 0.000012 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.45 | 0.000243 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.46 | 0.000208 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.46.6 | 0.000144 |
N | 319 | R319R | cgC | cgA | 2 | 2 | AY.47 | 0.000062 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.47 | 0.000062 |
N | 319 | R319H | cGc | cAc | 2 | 2 | AY.5.4 | 0.000553 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.54 | 0.000191 |
N | 319 | R319R | cgC | cgT | 2 | 2 | AY.58 | 0.001815 |
N | 319 | R319C | Cgc | Tgc | 2 | 2 | B.1 | 0.000018 |
N | 319 | R319G | Cgc | Ggc | 2 | 2 | B.1.1.25 | 0.001137 |
N | 319 | R319R | cgC | cgT | 2 | 2 | B.1.1.28 | 0.000622 |
N | 319 | R319H | cGc | cAc | 2 | 2 | B.1.1.284 | 0.000215 |
N | 319 | R319R | cgC | cgT | 2 | 2 | B.1.1.39 | 0.001019 |
N | 319 | R319L | cGc | cTc | 2 | 2 | B.1.1.7 | 0.000002 |
N | 319 | R319C | Cgc | Tgc | 2 | 2 | B.1.351 | 0.000059 |
N | 319 | R319R | cgC | cgT | 2 | 2 | B.1.575 | 0.000607 |
N | 319 | R319L | cGc | cTc | 2 | 2 | B.1.617.2 | 0.000008 |
N | 319 | R319R | cgC | cgT | 2 | 2 | B.1.637 | 0.000146 |
N | 319 | R319R | cgC | cgT | 2 | 2 | C.38 | 0.016129 |
N | 319 | R319R | cgC | cgT | 2 | 2 | P.1.14 | 0.000096 |
N | 319 | R319H | cGc | cAc | 2 | 2 | Q.3 | 0.00029 |
N | 319 | R319R | cgC | cgA | 2 | 2 | Q.4 | 0.00091 |
N | 319 | R319L | cGc | cTc | 1 | 1 | 0.055556 | |
N | 319 | R319F | CGc | TTc | 1 | 1 | 0.055556 | |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | 0.055556 | |
N | 319 | R319R | cgC | cgT | 1 | 1 | A | 0.000387 |
N | 319 | R319R | cgC | cgT | 1 | 1 | A.3 | 0.002096 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AD.2 | 0.000219 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | AY.102 | 0.000027 |
N | 319 | R319del | CGC | --- | 1 | 1 | AY.102 | 0.000027 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | AY.103 | 0.000006 |
N | 319 | R319L | cGc | cTc | 1 | 1 | AY.103 | 0.000006 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.104 | 0.001984 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.110 | 0.000113 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.113 | 0.000142 |
N | 319 | R319R | cgC | cgG | 1 | 1 | AY.118 | 0.000063 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.119 | 0.000035 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | AY.119 | 0.000035 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.12 | 0.000316 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.121 | 0.000135 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.16.1 | 0.00047 |
N | 319 | R319del2 | CGc | --c | 1 | 1 | AY.20 | 0.000039 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.21 | 0.001898 |
N | 319 | R319L | CGC | TTG | 1 | 1 | AY.23 | 0.00007 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.24 | 0.000431 |
N | 319 | R319del | CGC | --- | 1 | 1 | AY.25 | 0.000006 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.29.1 | 0.000221 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.3.1 | 0.000085 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.32 | 0.000532 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.33 | 0.000067 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.34 | 0.000097 |
N | 319 | R319del | CGC | --- | 1 | 1 | AY.34 | 0.000097 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.34 | 0.000097 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.34.1 | 0.00051 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | AY.39 | 0.000025 |
N | 319 | R319del2 | CGc | --c | 1 | 1 | AY.4 | 0.000002 |
N | 319 | R319L | cGc | cTc | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 319 | R319L | cGc | cTc | 1 | 1 | AY.43 | 0.000004 |
N | 319 | R319P | cGc | cCc | 1 | 1 | AY.44 | 0.000006 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | AY.45 | 0.000122 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | AY.46 | 0.000104 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.5.4 | 0.000277 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.58 | 0.000907 |
N | 319 | R319del | CGC | --- | 1 | 1 | AY.59 | 0.00053 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.61 | 0.000105 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.61 | 0.000105 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.62 | 0.000436 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.67 | 0.000464 |
N | 319 | R319del | CGC | --- | 1 | 1 | AY.67 | 0.000464 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.68 | 0.000274 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | AY.7.1 | 0.000113 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.70 | 0.000209 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.71 | 0.000475 |
N | 319 | R319del | CGC | --- | 1 | 1 | AY.75 | 0.000056 |
N | 319 | R319L | cGc | cTc | 1 | 1 | AY.75 | 0.000056 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | AY.82 | 0.001357 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.88 | 0.000884 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.89 | 0.004902 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.90 | 0.000684 |
N | 319 | R319L | cGc | cTc | 1 | 1 | AY.94 | 0.000443 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.95 | 0.000761 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.98 | 0.000079 |
N | 319 | R319R | cgC | cgT | 1 | 1 | AY.98.1 | 0.000048 |
N | 319 | R319H | cGc | cAc | 1 | 1 | AY.98.1 | 0.000048 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B | 0.000128 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1 | 0.000009 |
N | 319 | R319L | cGc | cTc | 1 | 1 | B.1 | 0.000009 |
N | 319 | R319del1 | cGc | c-c | 1 | 1 | B.1 | 0.000009 |
N | 319 | R319P | cGc | cCc | 1 | 1 | B.1 | 0.000009 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | B.1.1 | 0.000018 |
N | 319 | R319G | Cgc | Ggc | 1 | 1 | B.1.1 | 0.000018 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.1 | 0.000018 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.1.1 | 0.000327 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.1.117 | 0.009709 |
N | 319 | R319C | CgC | TgT | 1 | 1 | B.1.1.139 | 0.022727 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.1.216 | 0.00089 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | B.1.1.27 | 0.00565 |
N | 319 | R319L | cGC | cTA | 1 | 1 | B.1.1.300 | 0.010753 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.1.304 | 0.002809 |
N | 319 | R319H | cGC | cAT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | B.1.1.311 | 0.000358 |
N | 319 | R319del1 | cGc | c-c | 1 | 1 | B.1.1.315 | 0.008475 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.1.318 | 0.000302 |
N | 319 | R319L | cGc | cTc | 1 | 1 | B.1.1.372 | 0.000689 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.1.41 | 0.006329 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | B.1.1.411 | 0.014706 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | B.1.1.450 | 0.034483 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.1.50 | 0.000679 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | B.1.1.70 | 0.000341 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | B.1.128 | 0.000635 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | B.1.177 | 0.000013 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.177.17 | 0.000821 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.177.21 | 0.000076 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.177.23 | 0.003236 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.177.40 | 0.005155 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.177.42 | 0.000894 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | B.1.177.56 | 0.000668 |
N | 319 | R319F | CGc | TTc | 1 | 1 | B.1.177.63 | 0.002703 |
N | 319 | R319L | cGc | cTc | 1 | 1 | B.1.177.73 | 0.000566 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.177.79 | 0.002342 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.177.8 | 0.000752 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.182 | 0.007246 |
N | 319 | R319del1 | cGC | c-T | 1 | 1 | B.1.2 | 0.000009 |
N | 319 | R319L | cGc | cTc | 1 | 1 | B.1.2 | 0.000009 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | B.1.206 | 0.000816 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.214.2 | 0.0006 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | B.1.236 | 0.002053 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.240 | 0.000216 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.241 | 0.000812 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.243 | 0.00007 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.258 | 0.000067 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.258.2 | 0.004505 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.289 | 0.00266 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.36 | 0.000146 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.36.16 | 0.001425 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.369 | 0.000285 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.378 | 0.006849 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.380 | 0.006623 |
N | 319 | R319S | Cgc | Agc | 1 | 1 | B.1.39 | 0.003906 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.398 | 0.002976 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 319 | R319L | cGc | cTc | 1 | 1 | B.1.434 | 0.052632 |
N | 319 | R319G | Cgc | Ggc | 1 | 1 | B.1.459 | 0.004082 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.466.2 | 0.000391 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.500 | 0.052632 |
N | 319 | R319R | cgC | cgA | 1 | 1 | B.1.546 | 0.003704 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.564 | 0.000426 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.595.1 | 0.005848 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.596 | 0.000087 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 319 | R319L | cGc | cTc | 1 | 1 | B.1.617.1 | 0.000129 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
N | 319 | R319H | cGc | cAc | 1 | 1 | B.1.621 | 0.000089 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.623 | 0.000536 |
N | 319 | R319del | CGC | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.1.8 | 0.001972 |
N | 319 | R319R | cgC | cgT | 1 | 1 | B.5 | 0.038462 |
N | 319 | R319H | cGc | cAc | 1 | 1 | C.18 | 0.002591 |
N | 319 | R319R | cgC | cgA | 1 | 1 | C.37 | 0.000116 |
N | 319 | R319H | cGc | cAc | 1 | 1 | C.37 | 0.000116 |
N | 319 | R319L | cGc | cTc | 1 | 1 | D.2 | 0.000075 |
N | 319 | R319C | Cgc | Tgc | 1 | 1 | D.2 | 0.000075 |
N | 319 | R319R | cgC | cgT | 1 | 1 | N.4 | 0.004255 |
N | 319 | R319H | cGc | cAc | 1 | 1 | P.1.10 | 0.000269 |
N | 319 | R319H | cGc | cAc | 1 | 1 | P.1.6 | 0.001946 |
N | 319 | R319R | cgC | cgT | 1 | 1 | P.1.7 | 0.000319 |
N | 319 | R319H | cGc | cAc | 1 | 1 | P.2 | 0.000187 |
N | 319 | R319L | cGc | cTc | 1 | 1 | Q.3 | 0.000145 |
N | 319 | R319R | cgC | cgT | 1 | 1 | Q.8 | 0.000165 |
N | 319 | R319R | cgC | cgT | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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