CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 318 & Codon = tcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N318S318SsyntcGtcT15396136510.88665929225-29227

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N318S318StcGtcT1365115396All0.002611
N318S318StcGtcT45364536AD.20.993212
N318S318StcGtcT19961998B.1.1.5190.079263
N318S318StcGtcT15471825B.1.1.70.001385
N318S318StcGtcT568611B.1.617.20.002139
N318S318StcGtcT405557AY.40.00063
N318S318StcGtcT494520AY.430.002189
N318S318StcGtcT1449AY.780.001541
N318S318StcGtcT419419AY.210.795066
N318S318StcGtcT288370AY.1030.001788
N318S318StcGtcT224270AY.440.001363
N318S318StcGtcT241241AD.10.99177
N318S318StcGtcT206206AY.9.20.007566
N318S318StcGtcT134172B.10.001227
N318S318StcGtcT139148AY.1020.003685
N318S318StcGtcT125142AY.250.000752
N318S318StcGtcT98130B.1.20.000863
N318S318StcGtcT125126AY.260.003539
N318S318StcGtcT102121B.1.2430.007098
N318S318StcGtcT115115B.1.1.3150.974576
N318S318StcGtcT9698B.1.5960.008365
N318S318StcGtcT9090AY.540.008581
N318S318StcGtcT8890B.1.1600.002745
N318S318StcGtcT7489B.1.10.001342
N318S318StcGtcT7575B.1.6210.006639
N318S318StcGtcT5171AY.30.000507
N318S318StcGtcT5670P.10.000882
N318S318StcGtcT1662B.1.4290.000376
N318S318StcGtcT5556AY.4.20.001193
N318S318StcGtcT5356AY.470.001649
N318S318StcGtcT5353B.1.1.2690.071719
N318S318StcGtcT4148AY.390.001013
N318S318StcGtcT2448AY.420.000966
N318S318StcGtcT4848AY.60.001974
N318S318StcGtcT1743AY.290.000268
N318S318StcGtcT3342B.1.1770.000435
N318S318StcGtcT2039AY.200.000777
N318S318StcGtcT139B.1.1.3050.003861
N318S318StcGtcT2138AY.1200.000781
N318S318StcGtcT237AY.910.001461
N318S318StcGtcT1828AY.230.001255
N318S318StcGtcT2628AY.50.000537
N318S318StcGtcT1127B.1.2210.000781
N318S318StcGtcT2727B.1.564.10.042587
N318S318StcGtcT1426AY.340.001358
N318S318StcGtcT326AY.360.000445
N318S318StcGtcT625AY.140.000528
N318S318StcGtcT2525B.1.6360.167785
N318S318StcGtcT2424AY.46.60.001733
N318S318StcGtcT1723AY.1190.0006
N318S318StcGtcT2223AY.330.001469
N318S318StcGtcT2121AD.2.10.954545
N318S318StcGtcT2121AY.500.016787
N318S318StcGtcT1021B.1.5260.000235
N318S318StcGtcT1719B.1.36.290.008795
N318S318StcGtcT1919B.1.416.10.029687
N318S318StcGtcT1818AY.940.007968
N318S318StcGtcT1515B.1.1.3060.006576
N318S318StcGtcT1415B.1.360.002043
N318S318StcGtcT315R.10.00027
N318S318StcGtcT1414AY.740.001619
N318S318StcGtcT1414P.1.10.004447
N318S318StcGtcT714P.1.140.000335
N318S318StcGtcT1414Q.80.002309
N318S318StcGtcT1213AY.750.000672
N318S318StcGtcT1212AY.90.000811
N318S318StcGtcT1112AY.98.10.000533
N318S318StcGtcT1212Q.30.00174
N318S318StcGtcT1111AY.480.005116
N318S318StcGtcT1111AY.610.001153
N318S318StcGtcT611AY.99.20.000553
N318S318StcGtcT311B.1.1.3180.000905
N318S318StcGtcT911B.1.3510.000268
N318S318StcGtcT111B.1.5610.000397
N318S318StcGtcT810AY.1170.000676
N318S318StcGtcT610AY.1180.000376
N318S318StcGtcT1010AY.450.001217
N318S318StcGtcT1010AY.5.30.003374
N318S318StcGtcT910AY.9.10.000754
N318S318StcGtcT1010B.1.595.20.4
N318S318StcGtcT79AY.1000.000322
N318S318StcGtcT19AY.4.50.000107
N318S318StcGtcT99AY.460.000937
N318S318StcGtcT99AY.46.40.001481
N318S318StcGtcT99B.1.1.390.004587
N318S318StcGtcT38AY.1210.000406
N318S318StcGtcT78AY.270.000453
N318S318StcGtcT88B.1.1.3650.044693
N318S318StcGtcT88B.1.177.510.03653
N318S318StcGtcT78B.1.2580.000466
N318S318StcGtcT78B.1.617.10.000903
N318S318StcGtcT77A.2.5.20.011006
N318S318StcGtcT67AY.120.001896
N318S318StcGtcT17AY.160.00038
N318S318StcGtcT77AY.39.10.000277
N318S318StcGtcT77AY.790.008475
N318S318StcGtcT77AY.990.007345
N318S318StcGtcT77B.1.1.1610.024735
N318S318StcGtcT77B.1.1.2140.000388
N318S318StcGtcT37B.1.5250.000339
N318S318StcGtcT67B.1.5750.00182
N318S318StcGtcT57C.370.00058
N318S318StcGtcT77P.1.60.013619
N318S318StcGtcT57P.20.000933
N318S318StcGtcT66AY.130.000966
N318S318StcGtcT36AY.690.00056
N318S318StcGtcT66B.1.1.3000.064516
N318S318StcGtcT35AY.16.10.00141
N318S318StcGtcT45AY.920.001149
N318S318StcGtcT55AY.980.000395
N318S318StcGtcT55B.1.177.620.005959
N318S318StcGtcT55B.1.4970.001574
N318S318StcGtcT55B.1.6280.001762
N318S318StcGtcT34AY.1050.001929
N318S318StcGtcT44AY.1060.00134
N318S318StcGtcT44AY.1090.002959
N318S318StcGtcT34AY.75.10.000541
N318S318StcGtcT34AY.850.001282
N318S318StcGtcT44B0.000511
N318S318StcGtcT44B.1.1.2170.014545
N318S318StcGtcT44B.1.1.2280.012195
N318S318StcGtcT44B.1.1.330.001684
N318S318StcGtcT44B.1.1.4340.001394
N318S318StcGtcT44B.1.3620.006163
N318S318StcGtcT24B.1.3690.00057
N318S318StcGtcT44B.1.4270.000202
N318S318StcGtcT44B.1.621.10.002023
N318S318StcGtcT44P.1.150.000929
N318S318StcGtcT23AY.1100.000225
N318S318StcGtcT23AY.1160.000574
N318S318StcGtcT33AY.3.10.000256
N318S318StcGtcT23AY.4.2.10.000298
N318S318StcGtcT23AY.46.20.001271
N318S318StcGtcT23AY.5.40.000553
N318S318StcGtcT13AY.870.000833
N318S318StcGtcT33B.1.1.2160.002671
N318S318StcGtcT33B.1.1.2200.005576
N318S318StcGtcT33B.1.1.3040.008427
N318S318StcGtcT33B.1.177.860.00055
N318S318StcGtcT23B.1.2340.000264
N318S318StcGtcT33B.1.2400.000647
N318S318StcGtcT23B.1.438.10.000215
N318S318StcGtcT23B.1.466.20.000782
N318S318StcGtcT23B.1.619.10.001283
N318S318StcGtcT33C.36.30.001702
N318S318StcGtcT33P.1.70.000958
N318S318StcGtcT22AE.80.000978
N318S318StcGtcT22AY.1010.000981
N318S318StcGtcT12AY.1140.000231
N318S318StcGtcT22AY.120.10.000642
N318S318StcGtcT12AY.240.000431
N318S318StcGtcT22AY.530.000575
N318S318StcGtcT12AY.550.000917
N318S318StcGtcT12AY.640.000595
N318S318StcGtcT22AY.650.001066
N318S318StcGtcT22AY.70.000392
N318S318StcGtcT22AY.720.002721
N318S318StcGtcT22AY.840.000875
N318S318StcGtcT22AY.900.001369
N318S318StcGtcT22AY.930.000546
N318S318StcGtcT22AY.950.001522
N318S318StcGtcT22B.1.1.1340.022727
N318S318StcGtcT22B.1.1.1740.006757
N318S318StcGtcT22B.1.1.2190.01
N318S318StcGtcT22B.1.1.2220.000408
N318S318StcGtcT22B.1.1.280.000622
N318S318StcGtcT12B.1.1.2840.000107
N318S318StcGtcT22B.1.1.5280.009615
N318S318StcGtcT22B.1.1470.001512
N318S318StcGtcT22B.1.1580.047619
N318S318StcGtcT22B.1.1620.01005
N318S318StcGtcT22B.1.177.730.001133
N318S318StcGtcT12B.1.3110.000275
N318S318StcGtcT22B.1.36.10.002281
N318S318StcGtcT12B.1.3660.004878
N318S318StcGtcT22B.1.3750.001639
N318S318StcGtcT22B.1.3790.034483
N318S318StcGtcT12B.1.4000.000429
N318S318StcGtcT22B.1.5400.019417
N318S318StcGtcT22B.1.5970.009259
N318S318StcGtcT22B.1.6200.001892
N318S318StcGtcT22B.1.6250.004706
N318S318StcGtcT22B.1.6370.000146
N318S318StcGtcT22B.1.80.003945
N318S318StcGtcT22C.360.001821
N318S318StcGtcT22P.1.160.000748
N318S318StcGtcT22P.1.20.002312
N318S318StcGtcT22Q.40.00091
N318S318StcGtcT11A.30.002096
N318S318StcGtcT11AA.50.016129
N318S318StcGtcT11AP.10.001502
N318S318StcGtcT11AY.1070.000466
N318S318StcGtcT11AY.1110.000183
N318S318StcGtcT11AY.1130.000142
N318S318StcGtcT11AY.116.10.000311
N318S318StcGtcT11AY.280.00189
N318S318StcGtcT11AY.29.10.000221
N318S318StcGtcT11AY.300.000396
N318S318StcGtcT11AY.34.10.00051
N318S318StcGtcT11AY.370.000316
N318S318StcGtcT11AY.4.30.000842
N318S318StcGtcT11AY.590.00053
N318S318StcGtcT11AY.620.000436
N318S318StcGtcT11AY.630.000387
N318S318StcGtcT11AY.7.10.000113
N318S318StcGtcT11AY.7.20.000559
N318S318StcGtcT11AY.730.000665
N318S318StcGtcT11AY.770.001127
N318S318StcGtcT11AY.880.000884
N318S318StcGtcT11AY.970.001701
N318S318StcGtcT11B.1.1.10.000327
N318S318StcGtcT11B.1.1.1570.000913
N318S318StcGtcT11B.1.1.1580.012195
N318S318StcGtcT11B.1.1.1760.000439
N318S318StcGtcT11B.1.1.1960.005714
N318S318StcGtcT11B.1.1.1980.001468
N318S318StcGtcT11B.1.1.250.000569
N318S318StcGtcT11B.1.1.2530.002506
N318S318StcGtcT11B.1.1.2770.000759
N318S318StcGtcT11B.1.1.2970.002237
N318S318StcGtcT11B.1.1.3030.002762
N318S318StcGtcT11B.1.1.310.066667
N318S318StcGtcT11B.1.1.3120.001912
N318S318StcGtcT11B.1.1.3290.003846
N318S318StcGtcT11B.1.1.370.000193
N318S318StcGtcT11B.1.1.3710.010417
N318S318StcGtcT11B.1.1.3880.045455
N318S318StcGtcT11B.1.1.4090.002833
N318S318StcGtcT11B.1.1.4130.006897
N318S318StcGtcT11B.1.1.4320.001266
N318S318StcGtcT11B.1.1.4330.001425
N318S318StcGtcT11B.1.1.4350.034483
N318S318StcGtcT11B.1.1.5150.02
N318S318StcGtcT11B.1.1.5170.006803
N318S318StcGtcT11B.1.1110.001175
N318S318StcGtcT11B.1.1390.000733
N318S318StcGtcT11B.1.1400.018868
N318S318StcGtcT11B.1.1570.002985
N318S318StcGtcT11B.1.177.50.001242
N318S318StcGtcT11B.1.177.500.004695
N318S318StcGtcT11B.1.177.570.000281
N318S318StcGtcT11B.1.177.650.000665
N318S318StcGtcT11B.1.177.840.006667
N318S318StcGtcT11B.1.1920.009259
N318S318StcGtcT11B.1.2060.000816
N318S318StcGtcT11B.1.214.20.0006
N318S318StcGtcT11B.1.2350.002519
N318S318StcGtcT11B.1.2560.017241
N318S318StcGtcT11B.1.258.150.018868
N318S318StcGtcT11B.1.258.30.001675
N318S318StcGtcT11B.1.258.90.005
N318S318StcGtcT11B.1.2650.001271
N318S318StcGtcT11B.1.2670.018519
N318S318StcGtcT11B.1.30.002618
N318S318StcGtcT11B.1.3190.003049
N318S318StcGtcT11B.1.36.100.004785
N318S318StcGtcT11B.1.36.170.000494
N318S318StcGtcT11B.1.36.310.001751
N318S318StcGtcT11B.1.3670.000792
N318S318StcGtcT11B.1.3890.001002
N318S318StcGtcT11B.1.3910.001127
N318S318StcGtcT11B.1.4700.001404
N318S318StcGtcT11B.1.5330.009615
N318S318StcGtcT11B.1.5410.004425
N318S318StcGtcT11B.1.5760.000907
N318S318StcGtcT11B.1.5820.000491
N318S318StcGtcT11B.1.6050.005952
N318S318StcGtcT11B.1.6190.000871
N318S318StcGtcT11B.1.6310.003367
N318S318StcGtcT11B.30.000831
N318S318StcGtcT11C.160.00106
N318S318StcGtcT11C.230.005814
N318S318StcGtcT11P.1.100.000269
N318S318StcGtcT11P.70.004367
N318S318StcGtcT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.