CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 318 & Codon = tcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N318S318SsyntcGtcA1539616910.10983429225-29227

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N318S318StcGtcA169115396All0.000323
N318S318StcGtcA21998B.1.1.5190.000079
N318S318StcGtcA2761825B.1.1.70.000247
N318S318StcGtcA21611B.1.617.20.000079
N318S318StcGtcA148557AY.40.00023
N318S318StcGtcA26520AY.430.000115
N318S318StcGtcA448449AY.780.690293
N318S318StcGtcA78370AY.1030.000484
N318S318StcGtcA40270AY.440.000243
N318S318StcGtcA37172B.10.000339
N318S318StcGtcA9148AY.1020.000239
N318S318StcGtcA16142AY.250.000096
N318S318StcGtcA32130B.1.20.000282
N318S318StcGtcA1126AY.260.000028
N318S318StcGtcA19121B.1.2430.001322
N318S318StcGtcA298B.1.5960.000174
N318S318StcGtcA290B.1.1600.000062
N318S318StcGtcA1489B.1.10.000254
N318S318StcGtcA2071AY.30.000199
N318S318StcGtcA1470P.10.000221
N318S318StcGtcA4662B.1.4290.001082
N318S318StcGtcA156AY.4.20.000022
N318S318StcGtcA356AY.470.000093
N318S318StcGtcA648AY.390.000148
N318S318StcGtcA2448AY.420.000966
N318S318StcGtcA2643AY.290.00041
N318S318StcGtcA942B.1.1770.000119
N318S318StcGtcA1939AY.200.000738
N318S318StcGtcA3839B.1.1.3050.146718
N318S318StcGtcA1738AY.1200.000632
N318S318StcGtcA3537AY.910.025566
N318S318StcGtcA928AY.230.000628
N318S318StcGtcA228AY.50.000041
N318S318StcGtcA1627B.1.2210.001137
N318S318StcGtcA1226AY.340.001164
N318S318StcGtcA2326AY.360.003409
N318S318StcGtcA1925AY.140.001672
N318S318StcGtcA623AY.1190.000212
N318S318StcGtcA123AY.330.000067
N318S318StcGtcA1121B.1.5260.000259
N318S318StcGtcA219B.1.36.290.001035
N318S318StcGtcA115B.1.360.000146
N318S318StcGtcA1215R.10.00108
N318S318StcGtcA614P.1.140.000287
N318S318StcGtcA113AY.750.000056
N318S318StcGtcA112AY.98.10.000048
N318S318StcGtcA1111AY.570.007218
N318S318StcGtcA211AY.99.20.000184
N318S318StcGtcA811B.1.1.3180.002414
N318S318StcGtcA211B.1.3510.000059
N318S318StcGtcA1011B.1.5610.00397
N318S318StcGtcA210AY.1170.000169
N318S318StcGtcA410AY.1180.000251
N318S318StcGtcA110AY.9.10.000084
N318S318StcGtcA29AY.1000.000092
N318S318StcGtcA89AY.4.50.00086
N318S318StcGtcA58AY.1210.000677
N318S318StcGtcA18AY.270.000065
N318S318StcGtcA18B.1.2580.000067
N318S318StcGtcA18B.1.617.10.000129
N318S318StcGtcA17AY.120.000316
N318S318StcGtcA67AY.160.002278
N318S318StcGtcA47B.1.5250.000453
N318S318StcGtcA17B.1.5750.000303
N318S318StcGtcA27C.370.000232
N318S318StcGtcA27P.20.000373
N318S318StcGtcA36AY.690.00056
N318S318StcGtcA15AY.920.000287
N318S318StcGtcA14AY.1050.000643
N318S318StcGtcA14AY.75.10.00018
N318S318StcGtcA14AY.850.000427
N318S318StcGtcA44B.1.36.80.004
N318S318StcGtcA24B.1.3690.00057
N318S318StcGtcA33AY.10.001187
N318S318StcGtcA13AY.1100.000113
N318S318StcGtcA13AY.1160.000287
N318S318StcGtcA13AY.4.2.10.000149
N318S318StcGtcA13AY.46.20.000635
N318S318StcGtcA13AY.5.40.000277
N318S318StcGtcA23AY.870.001665
N318S318StcGtcA13B.1.2340.000132
N318S318StcGtcA13B.1.438.10.000107
N318S318StcGtcA13B.1.466.20.000391
N318S318StcGtcA13B.1.619.10.000641
N318S318StcGtcA22A.20.001324
N318S318StcGtcA12AY.1140.000231
N318S318StcGtcA12AY.240.000431
N318S318StcGtcA12AY.550.000917
N318S318StcGtcA12AY.640.000595
N318S318StcGtcA12B.1.1.2840.000107
N318S318StcGtcA22B.1.1.700.000682
N318S318StcGtcA22B.1.177.40.000422
N318S318StcGtcA12B.1.3110.000275
N318S318StcGtcA12B.1.3660.004878
N318S318StcGtcA12B.1.4000.000429
N318S318StcGtcA22B.1.4160.002538
N318S318StcGtcA11A.10.000282
N318S318StcGtcA11A.120.166667
N318S318StcGtcA11AY.860.00083
N318S318StcGtcA11B.1.1.2000.007463
N318S318StcGtcA11B.1.1.2320.001815
N318S318StcGtcA11B.1.1.2790.001121
N318S318StcGtcA11B.1.1.3510.002793
N318S318StcGtcA11B.1.1.5230.001563
N318S318StcGtcA11B.1.1.540.003021
N318S318StcGtcA11B.1.1040.00369
N318S318StcGtcA11B.1.177.110.001698
N318S318StcGtcA11B.1.177.120.000152
N318S318StcGtcA11B.1.177.160.000664
N318S318StcGtcA11B.1.177.600.000218
N318S318StcGtcA11B.1.2010.005682
N318S318StcGtcA11B.1.3960.000706
N318S318StcGtcA11B.1.4210.007463
N318S318StcGtcA11B.1.5270.003704
N318S318StcGtcA11B.1.5380.008065
N318S318StcGtcA11B.1.5560.007519
N318S318StcGtcA11B.1.5640.000426
N318S318StcGtcA11B.1.6090.000479
N318S318StcGtcA11B.1.690.035714

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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