CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 315

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N315F315FsynttCttT66176617129216-29218
N315F315deldelTTC---3737129216-29218
N315F315LnonsynTtcCtc25180.7229216-29218
N315F315LnonsynttCttA2540.1629216-29218
N315F315LnonsynttCttG2530.1229216-29218
N315F315YnonsyntTctAc99129216-29218
N315F315SnonsyntTctCc33129216-29218
N315F315CnonsyntTctGc22129216-29218
N315F315del2deltTCt--210.529216-29218
N315F315del2delTTC--N210.529216-29218
N315F315XnonsyntTCtGA11129216-29218
N315F315VnonsynTtCGtG11129216-29218
N315F315AnonsynTTcGCc11129216-29218
N315F315PnonsynTTcCCc11129216-29218

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N315F315FttCttT66176617All0.001266
N315F315FttCttT994994B.1.1.70.00089
N315F315FttCttT889889AY.510.808182
N315F315FttCttT725725AY.40.001128
N315F315FttCttT556556B.1.20.004896
N315F315FttCttT249249B.1.617.20.000938
N315F315FttCttT217217B.1.5250.024556
N315F315FttCttT188188AY.1030.001167
N315F315FttCttT143143B.1.4270.007221
N315F315FttCttT135135AY.30.001343
N315F315FttCttT131131AY.250.000788
N315F315FttCttT115115B.1.4290.002706
N315F315FttCttT107107AY.430.000474
N315F315FttCttT105105AY.450.012777
N315F315FttCttT102102AY.440.000621
N315F315FttCttT8282AY.1180.005137
N315F315FttCttT7676B.10.000696
N315F315FttCttT7373AY.340.007078
N315F315FttCttT6565P.10.001024
N315F315FttCttT6363AY.470.00196
N315F315FttCttT5656AY.200.002176
N315F315FttCttT4545B.1.1770.000593
N315F315FttCttT4444AY.690.008214
N315F315FttCttT4141B.1.1.4040.650794
N315F315FttCttT4040B.1.10.000726
N315F315delTTC---3737All0.000007
N315F315FttCttT3737B.1.5260.00087
N315F315FttCttT3434AY.750.001905
N315F315FttCttT3333AY.230.002302
N315F315FttCttT3232D.20.002401
N315F315FttCttT3131AY.790.03753
N315F315FttCttT2828AY.50.000578
N315F315FttCttT2828B.1.6280.009866
N315F315FttCttT2727B.1.1600.000842
N315F315FttCttT2626P.20.004853
N315F315LTtcCtc1825All0.000003
N315F315LttCttA425All0.000001
N315F315LttCttG325All0.000001
N315F315FttCttT2424AY.460.002498
N315F315FttCttT2424B.1.360.003502
N315F315FttCttT2323AY.1190.000812
N315F315FttCttT2222AY.1020.000583
N315F315FttCttT2222Q.10.002779
N315F315FttCttT1919AY.290.0003
N315F315FttCttT1919AY.390.00047
N315F315FttCttT1919AY.4.20.000412
N315F315FttCttT1919B.1.1.1940.094059
N315F315FttCttT1919P.1.140.000908
N315F315FttCttT1818AY.1000.000828
N315F315FttCttT1818AY.9.20.000661
N315F315FttCttT1717AY.950.012938
N315F315FttCttT1717B.1.2580.001131
N315F315FttCttT1616B.6.21
N315F315FttCttT1515AE.80.007335
N315F315FttCttT1515AY.4.50.001612
N315F315FttCttT1515B.1.2210.001065
N315F315FttCttT1414AY.10.00554
N315F315FttCttT1414B.1.1.2140.000776
N315F315FttCttT1414P.1.150.003253
N315F315FttCttT1313AY.1200.000483
N315F315FttCttT1313AY.260.000368
N315F315FttCttT1313AY.98.10.00063
N315F315FttCttT1313B.1.6210.001151
N315F315FttCttT1212B.1.1.280.003735
N315F315FttCttT1212B.1.177.860.002201
N315F315FttCttT1212P.1.160.004489
N315F315FttCttT1111AY.330.000735
N315F315FttCttT1111AY.540.001049
N315F315FttCttT1111AY.610.001153
N315F315FttCttT1111AY.980.000869
N315F315FttCttT1111B.1.3510.000327
N315F315FttCttT1111B.1.5750.003337
N315F315FttCttT1111C.370.001277
N315F315FttCttT1010AY.420.000402
N315F315FttCttT1010AY.9.10.000837
N315F315FttCttT1010B.1.1.5190.000397
N315F315FttCttT1010B.1.4380.065359
N315F315FttCttT1010B.1.617.30.029851
N315F315YtTctAc99All0.000002
N315F315FttCttT99AY.1130.001282
N315F315FttCttT99AY.1210.001218
N315F315FttCttT99AY.370.002845
N315F315FttCttT99B.1.2430.000626
N315F315FttCttT99B.1.258.30.015075
N315F315FttCttT99B.1.36.290.004656
N315F315FttCttT99B.1.617.10.001161
N315F315FttCttT88AY.740.000925
N315F315FttCttT88B.1.258.170.000832
N315F315FttCttT88B.6.60.007111
N315F315FttCttT88C.360.007286
N315F315FttCttT77AY.270.000453
N315F315FttCttT77AY.3.10.000597
N315F315FttCttT77AY.90.000473
N315F315FttCttT77B.1.36.180.002941
N315F315FttCttT66AY.360.000889
N315F315FttCttT66AY.39.10.000238
N315F315FttCttT66B.1.3690.001711
N315F315FttCttT66B.1.4990.006303
N315F315FttCttT66P.1.170.000971
N315F315FttCttT55A.10.001409
N315F315FttCttT55AY.1060.001674
N315F315FttCttT55AY.1170.000423
N315F315FttCttT55AY.46.50.000992
N315F315FttCttT55AY.620.002179
N315F315FttCttT55AY.640.002976
N315F315FttCttT55AY.99.20.000461
N315F315FttCttT55B.1.1.10.001633
N315F315FttCttT55B.1.1.2160.004452
N315F315YtTctAc55B.1.1.70.000004
N315F315FttCttT55Q.40.002274
N315F315FttCttT44A.2.50.001996
N315F315FttCttT44A.2.5.20.006289
N315F315FttCttT44AY.46.60.000289
N315F315FttCttT44AY.60.000165
N315F315LttCttA24B.10.000018
N315F315LTtcCtc24B.10.000018
N315F315FttCttT44B.1.1.4340.001394
N315F315delTTC---44B.1.1.70.000004
N315F315delTTC---44B.1.1770.000053
N315F315FttCttT44B.1.438.10.000429
N315F315FttCttT44B.1.5820.001963
N315F315FttCttT44B.1.5960.000349
N315F315FttCttT44Q.70.004444
N315F315FttCttT44Q.80.00066
N315F315StTctCc33All0.000001
N315F315FttCttT33AY.116.10.000934
N315F315FttCttT33AY.120.10.000963
N315F315FttCttT33AY.130.000483
N315F315FttCttT33AY.160.001139
N315F315FttCttT33AY.840.001312
N315F315FttCttT33AY.930.000819
N315F315FttCttT33AY.990.003148
N315F315delTTC---33B.1.10.000054
N315F315FttCttT33B.1.1.1690.054545
N315F315FttCttT33B.1.1.2190.015
N315F315FttCttT33B.1.1.370.000579
N315F315LTtcCtc33B.1.1770.00004
N315F315FttCttT33B.1.177.350.002073
N315F315FttCttT33B.1.177.710.030303
N315F315FttCttT33B.1.177.770.002179
N315F315FttCttT33B.1.177.820.001432
N315F315FttCttT33B.1.177.850.016304
N315F315FttCttT33B.1.3110.000824
N315F315FttCttT33B.1.3240.004815
N315F315FttCttT33B.1.3710.003367
N315F315FttCttT33B.1.3960.002117
N315F315delTTC---33B.1.617.20.000011
N315F315FttCttT33N.50.0053
N315F315FttCttT33R.10.00027
N315F315FttCttT22A0.000774
N315F315FttCttT22A.23.10.001408
N315F315FttCttT22A.50.003846
N315F315FttCttT22AA.10.014493
N315F315CtTctGc22All0
N315F315del2TTC--N12All0
N315F315del2tTCt--12All0
N315F315FttCttT22AY.1050.001286
N315F315FttCttT22AY.1110.000366
N315F315FttCttT22AY.350.000466
N315F315FttCttT22AY.4.10.001475
N315F315LTtcCtc22AY.430.000009
N315F315delTTC---22AY.430.000009
N315F315FttCttT22AY.5.30.000675
N315F315FttCttT22AY.600.001876
N315F315FttCttT22AY.630.000774
N315F315FttCttT22AY.850.000854
N315F315FttCttT22AY.910.001461
N315F315FttCttT22B0.000256
N315F315LttCttG12B0.000128
N315F315LTtcCtc12B0.000128
N315F315StTctCc22B.10.000018
N315F315FttCttT22B.1.1.1700.002494
N315F315FttCttT22B.1.1.2220.000408
N315F315FttCttT22B.1.1.2530.005013
N315F315FttCttT22B.1.1.2790.002242
N315F315FttCttT22B.1.1.2840.000215
N315F315FttCttT22B.1.1.2940.002532
N315F315FttCttT22B.1.1.3180.000604
N315F315FttCttT22B.1.1.4210.060606
N315F315FttCttT22B.1.1.4640.002946
N315F315LTtcCtc22B.1.1.70.000002
N315F315FttCttT22B.1.1.700.000682
N315F315FttCttT22B.1.160.160.001859
N315F315FttCttT22B.1.177.810.000379
N315F315FttCttT22B.1.2340.000264
N315F315FttCttT22B.1.2370.00995
N315F315FttCttT22B.1.2400.000431
N315F315FttCttT22B.1.243.10.044444
N315F315FttCttT22B.1.3200.002491
N315F315FttCttT22B.1.351.50.001199
N315F315FttCttT22B.1.36.170.000988
N315F315FttCttT22B.1.36.200.033898
N315F315FttCttT22B.1.36.310.003503
N315F315FttCttT22B.1.3750.001639
N315F315FttCttT22B.1.466.20.000782
N315F315FttCttT22B.1.6090.000959
N315F315FttCttT22B.1.910.004149
N315F315FttCttT22B.230.005848
N315F315FttCttT22B.310.007463
N315F315FttCttT22C.20.032258
N315F315FttCttT22C.350.001548
N315F315FttCttT22P.1.10.000635
N315F315FttCttT22P.1.100.000539
N315F315FttCttT22P.1.40.001953
N315F315LTtcCtc110.055556
N315F315VTtCGtG11All0
N315F315XtTCtGA11All0
N315F315ATTcGCc11All0
N315F315PTTcCCc11All0
N315F315FttCttT11AU.30.00211
N315F315delTTC---11AY.1020.000027
N315F315YtTctAc11AY.1030.000006
N315F315FttCttT11AY.1040.001984
N315F315FttCttT11AY.1080.001103
N315F315LttCttA11AY.1090.00074
N315F315FttCttT11AY.1100.000113
N315F315FttCttT11AY.1140.000231
N315F315FttCttT11AY.1160.000287
N315F315LTtcCtc11AY.1170.000085
N315F315FttCttT11AY.120.000316
N315F315FttCttT11AY.120.2.10.000498
N315F315LTtcCtc11AY.1210.000135
N315F315FttCttT11AY.140.000088
N315F315FttCttT11AY.16.10.00047
N315F315FttCttT11AY.190.00114
N315F315delTTC---11AY.200.000039
N315F315PTTcCCc11AY.230.00007
N315F315delTTC---11AY.250.000006
N315F315FttCttT11AY.29.10.000221
N315F315FttCttT11AY.300.000396
N315F315delTTC---11AY.340.000097
N315F315LTtcCtc11AY.360.000148
N315F315FttCttT11AY.380.000499
N315F315FttCttT11AY.39.20.001541
N315F315YtTctAc11AY.40.000002
N315F315delTTC---11AY.40.000002
N315F315FttCttT11AY.4.2.10.000149
N315F315FttCttT11AY.410.000294
N315F315ATTcGCc11AY.440.000006
N315F315FttCttT11AY.46.20.000635
N315F315FttCttT11AY.490.003195
N315F315delTTC---11AY.50.000021
N315F315FttCttT11AY.5.40.000277
N315F315FttCttT11AY.580.000907
N315F315FttCttT11AY.590.00053
N315F315delTTC---11AY.670.000464
N315F315FttCttT11AY.7.10.000113
N315F315FttCttT11AY.710.000475
N315F315delTTC---11AY.750.000056
N315F315FttCttT11AY.75.10.00018
N315F315FttCttT11AY.760.004831
N315F315delTTC---11AY.780.001541
N315F315delTTC---11B0.000128
N315F315delTTC---11B.10.000009
N315F315LttCttA11B.1.10.000018
N315F315VTtCGtG11B.1.1.1390.022727
N315F315FttCttT11B.1.1.1740.003378
N315F315FttCttT11B.1.1.1760.000439
N315F315FttCttT11B.1.1.1980.001468
N315F315FttCttT11B.1.1.2100.005714
N315F315FttCttT11B.1.1.2400.004695
N315F315FttCttT11B.1.1.250.000569
N315F315LTtcCtc11B.1.1.270.00565
N315F315FttCttT11B.1.1.2740.005051
N315F315delTTC---11B.1.1.2790.001121
N315F315FttCttT11B.1.1.2820.011628
N315F315FttCttT11B.1.1.2970.002237
N315F315FttCttT11B.1.1.3060.000438
N315F315FttCttT11B.1.1.3260.001761
N315F315FttCttT11B.1.1.330.000421
N315F315FttCttT11B.1.1.3480.000796
N315F315FttCttT11B.1.1.3970.002252
N315F315FttCttT11B.1.1.3980.003226
N315F315CtTctGc11B.1.1.3980.003226
N315F315FttCttT11B.1.1.4200.001006
N315F315FttCttT11B.1.1.4280.009434
N315F315FttCttT11B.1.1.4350.034483
N315F315FttCttT11B.1.1.4660.008696
N315F315FttCttT11B.1.1.500.000679
N315F315del2TTC--N11B.1.1.70.000001
N315F315FttCttT11B.1.160.260.002421
N315F315FttCttT11B.1.1660.008475
N315F315FttCttT11B.1.177.100.000878
N315F315FttCttT11B.1.177.110.001698
N315F315FttCttT11B.1.177.160.000664
N315F315FttCttT11B.1.177.170.000821
N315F315FttCttT11B.1.177.20.004545
N315F315LTtcCtc11B.1.177.310.011494
N315F315FttCttT11B.1.177.390.015385
N315F315FttCttT11B.1.177.540.000606
N315F315FttCttT11B.1.177.570.000281
N315F315FttCttT11B.1.177.600.000218
N315F315CtTctGc11B.1.177.630.002703
N315F315FttCttT11B.1.177.650.000665
N315F315FttCttT11B.1.177.670.007634
N315F315FttCttT11B.1.177.730.000566
N315F315delTTC---11B.1.177.830.001481
N315F315FttCttT11B.1.177.870.000728
N315F315FttCttT11B.1.177.90.001332
N315F315LTtcCtc11B.1.20.000009
N315F315YtTctAc11B.1.20.000009
N315F315delTTC---11B.1.20.000009
N315F315FttCttT11B.1.2060.000816
N315F315FttCttT11B.1.2100.002132
N315F315LTtcCtc11B.1.2210.000071
N315F315delTTC---11B.1.2580.000067
N315F315delTTC---11B.1.258.160.001637
N315F315FttCttT11B.1.2790.000514
N315F315FttCttT11B.1.30.002618
N315F315FttCttT11B.1.3050.002151
N315F315FttCttT11B.1.3320.003497
N315F315FttCttT11B.1.351.20.000303
N315F315FttCttT11B.1.36.270.000763
N315F315LttCttG11B.1.36.290.000517
N315F315FttCttT11B.1.36.360.000602
N315F315FttCttT11B.1.36.390.002217
N315F315FttCttT11B.1.3670.000792
N315F315FttCttT11B.1.4090.000781
N315F315FttCttT11B.1.416.10.001563
N315F315delTTC---11B.1.4270.00005
N315F315FttCttT11B.1.4360.001029
N315F315XtTCtGA11B.1.466.20.000391
N315F315FttCttT11B.1.4690.00361
N315F315FttCttT11B.1.4700.001404
N315F315FttCttT11B.1.5090.000866
N315F315FttCttT11B.1.5130.013889
N315F315FttCttT11B.1.5230.002451
N315F315YtTctAc11B.1.5260.000024
N315F315FttCttT11B.1.5270.003704
N315F315FttCttT11B.1.5500.013699
N315F315FttCttT11B.1.5510.00129
N315F315FttCttT11B.1.5610.000397
N315F315FttCttT11B.1.5640.000426
N315F315FttCttT11B.1.5740.002151
N315F315FttCttT11B.1.5770.000687
N315F315FttCttT11B.1.5870.001898
N315F315FttCttT11B.1.5880.00091
N315F315FttCttT11B.1.5950.000261
N315F315delTTC---11B.1.6100.003546
N315F315delTTC---11B.1.617.10.000129
N315F315del2tTCt--11B.1.617.20.000004
N315F315delTTC---11B.1.617.30.002985
N315F315FttCttT11B.1.6260.005714
N315F315delTTC---11B.1.6300.005236
N315F315FttCttT11B.1.6370.000073
N315F315FttCttT11B.30.000831
N315F315FttCttT11B.400.000364
N315F315FttCttT11C.1.20.004255
N315F315FttCttT11C.2.10.006667
N315F315FttCttT11C.260.007353
N315F315FttCttT11C.300.001727
N315F315FttCttT11C.380.008065
N315F315StTctCc11D.20.000075
N315F315LttCttG11D.20.000075
N315F315FttCttT11D.30.005917
N315F315FttCttT11P.1.120.000484
N315F315FttCttT11P.1.130.000898
N315F315FttCttT11P.1.60.001946