CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 312

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N312S312SsyntcAtcG8594710.54831229207-29209
N312S312SsyntcAtcT8593290.38300429207-29209
N312S312SsyntcAtcC859590.068684529207-29209
N312S312LnonsyntCatTa34320.94117629207-29209
N312S312LnonsynTCACTT3410.029411829207-29209
N312S312LnonsyntCAtTG3410.029411829207-29209
N312S312deldelTCA---2929129207-29209
N312S312PnonsynTcaCca55129207-29209
N312S312AnonsynTcaGca44129207-29209
N312S312del2delTCA--N420.529207-29209
N312S312del2deltCAt--410.2529207-29209
N312S312del2delTCa--a410.2529207-29209
N312S312del1deltcAtc-22129207-29209
N312S312XnonsyntCatAa22129207-29209
N312S312TnonsynTcAAcC210.529207-29209
N312S312TnonsynTcaAca210.529207-29209
N312S312FnonsyntCAtTC210.529207-29209
N312S312FnonsyntCAtTT210.529207-29209
N312S312KnonsynTCaAAa11129207-29209

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N312S312StcAtcG471859All0.00009
N312S312StcAtcT329859All0.000063
N312S312StcAtcC59859All0.000011
N312S312StcAtcT171251B.1.1.70.000153
N312S312StcAtcG80251B.1.1.70.000072
N312S312StcAtcG8181B.1.1.4610.975904
N312S312StcAtcG4174AY.40.000064
N312S312StcAtcT2574AY.40.000039
N312S312StcAtcC874AY.40.000012
N312S312StcAtcG6573B.1.1600.002027
N312S312StcAtcT873B.1.1600.00025
N312S312StcAtcG3535B.1.5260.000823
N312S312LtCatTa3234All0.000006
N312S312LTCACTT134All0
N312S312LtCAtTG134All0
N312S312StcAtcC1731AY.440.000103
N312S312StcAtcG1231AY.440.000073
N312S312StcAtcT231AY.440.000012
N312S312delTCA---2929All0.000006
N312S312StcAtcC1629AY.1030.000099
N312S312StcAtcT729AY.1030.000043
N312S312StcAtcG629AY.1030.000037
N312S312StcAtcG2425B.10.00022
N312S312StcAtcT125B.10.000009
N312S312StcAtcT1123B.1.617.20.000041
N312S312StcAtcG1123B.1.617.20.000041
N312S312StcAtcC123B.1.617.20.000004
N312S312StcAtcT1922AY.1020.000504
N312S312StcAtcG322AY.1020.00008
N312S312StcAtcT1317AY.250.000078
N312S312StcAtcG417AY.250.000024
N312S312StcAtcG1313AY.1180.000814
N312S312StcAtcT1313AY.390.000321
N312S312StcAtcG1012P.10.000158
N312S312StcAtcT212P.10.000032
N312S312StcAtcT1111AY.98.10.000533
N312S312StcAtcC79B.1.20.000062
N312S312StcAtcG29B.1.20.000018
N312S312LtCatTa78B.10.000064
N312S312LtCAtTG18B.10.000009
N312S312StcAtcG67AY.30.00006
N312S312StcAtcT17AY.30.00001
N312S312StcAtcG46B.1.10.000073
N312S312StcAtcT26B.1.10.000036
N312S312StcAtcG55AD.20.001095
N312S312PTcaCca55All0.000001
N312S312StcAtcG45AY.430.000018
N312S312StcAtcT15AY.430.000004
N312S312StcAtcG55B.1.177.770.003631
N312S312LtCatTa55D.20.000375
N312S312ATcaGca44All0.000001
N312S312del2TCA--N24All0
N312S312del2TCa--a14All0
N312S312del2tCAt--14All0
N312S312StcAtcC44AY.1000.000184
N312S312StcAtcG44AY.200.000155
N312S312StcAtcG44AY.4.20.000087
N312S312delTCA---44B.1.1770.000053
N312S312StcAtcG44B.1.2430.000278
N312S312StcAtcT33AY.1130.000427
N312S312StcAtcT23AY.140.000176
N312S312StcAtcG13AY.140.000088
N312S312StcAtcG33AY.230.000209
N312S312StcAtcG33AY.270.000194
N312S312StcAtcG23AY.460.000208
N312S312StcAtcT13AY.460.000104
N312S312StcAtcG33AY.700.000626
N312S312StcAtcG33AY.750.000168
N312S312StcAtcT33B.1.1.3690.001339
N312S312StcAtcT33B.1.177.40.000633
N312S312StcAtcT33B.1.2060.002447
N312S312delTCA---220.111111
N312S312del1tcAtc-22All0
N312S312XtCatAa22All0
N312S312TTcAAcC12All0
N312S312FtCAtTT12All0
N312S312TTcaAca12All0
N312S312FtCAtTC12All0
N312S312StcAtcG12AY.1190.000035
N312S312StcAtcT12AY.1190.000035
N312S312StcAtcG22AY.130.000322
N312S312LtCatTa22AY.250.000012
N312S312StcAtcG22AY.360.000296
N312S312LtCatTa22AY.40.000003
N312S312StcAtcG22AY.4.40.000818
N312S312StcAtcT22AY.660.002139
N312S312StcAtcT22AY.7.20.001119
N312S312StcAtcT22AY.9.10.000167
N312S312StcAtcG22AY.99.20.000184
N312S312delTCA---22B.1.10.000036
N312S312ATcaGca22B.1.10.000036
N312S312TTcAAcC12B.1.1.390.00051
N312S312TTcaAca12B.1.1.390.00051
N312S312del1tcAtc-22B.1.1.70.000002
N312S312delTCA---22B.1.1.70.000002
N312S312del2tCAt--12B.1.1.70.000001
N312S312del2TCA--N12B.1.1.70.000001
N312S312LtCatTa22B.1.1600.000062
N312S312LtCatTa22B.1.20.000018
N312S312StcAtcT22B.1.3750.001639
N312S312StcAtcT22B.1.415.10.015152
N312S312StcAtcG12B.1.6210.000089
N312S312StcAtcC12B.1.6210.000089
N312S312StcAtcG12P.1.140.000048
N312S312StcAtcT12P.1.140.000048
N312S312StcAtcT22P.1.70.000639
N312S312StcAtcT11A.2.40.003367
N312S312StcAtcG11A.210.00277
N312S312KTCaAAa11All0
N312S312delTCA---11AY.1020.000027
N312S312LtCatTa11AY.1190.000035
N312S312StcAtcT11AY.20.000356
N312S312delTCA---11AY.200.000039
N312S312FtCAtTC11AY.230.00007
N312S312delTCA---11AY.250.000006
N312S312ATcaGca11AY.250.000006
N312S312StcAtcG11AY.260.000028
N312S312StcAtcT11AY.330.000067
N312S312delTCA---11AY.340.000097
N312S312StcAtcG11AY.370.000316
N312S312LtCatTa11AY.39.10.00004
N312S312delTCA---11AY.40.000002
N312S312StcAtcT11AY.4.10.000737
N312S312delTCA---11AY.430.000004
N312S312LtCatTa11AY.430.000004
N312S312StcAtcT11AY.46.40.000165
N312S312LtCatTa11AY.480.000465
N312S312StcAtcG11AY.540.000095
N312S312delTCA---11AY.670.000464
N312S312StcAtcT11AY.690.000187
N312S312delTCA---11AY.750.000056
N312S312KTCaAAa11AY.790.001211
N312S312XtCatAa11AY.840.000437
N312S312StcAtcC11AY.850.000427
N312S312StcAtcG11AY.90.000068
N312S312FtCAtTT11AY.9.10.000084
N312S312StcAtcG11AY.9.20.000037
N312S312StcAtcG11B0.000128
N312S312delTCA---11B.10.000009
N312S312LtCatTa11B.1.10.000018
N312S312XtCatAa11B.1.10.000018
N312S312PTcaCca11B.1.10.000018
N312S312StcAtcG11B.1.1.1390.022727
N312S312StcAtcG11B.1.1.1530.001095
N312S312StcAtcT11B.1.1.1800.010753
N312S312StcAtcG11B.1.1.2000.007463
N312S312StcAtcT11B.1.1.250.000569
N312S312LTCACTT11B.1.1.270.00565
N312S312StcAtcT11B.1.1.2770.000759
N312S312delTCA---11B.1.1.2790.001121
N312S312LtCatTa11B.1.1.3110.000358
N312S312StcAtcC11B.1.1.330.000421
N312S312LtCatTa11B.1.1.3690.000446
N312S312del2TCA--N11B.1.1.370.000193
N312S312StcAtcT11B.1.1.3740.002375
N312S312StcAtcC11B.1.1.390.00051
N312S312StcAtcG11B.1.1.4090.002833
N312S312StcAtcG11B.1.1.4340.000349
N312S312StcAtcG11B.1.1.5190.00004
N312S312PTcaCca11B.1.1.70.000001
N312S312PTcaCca11B.1.1600.000031
N312S312StcAtcT11B.1.1770.000013
N312S312LtCatTa11B.1.1770.000013
N312S312del2TCa--a11B.1.177.630.002703
N312S312StcAtcG11B.1.177.70.000165
N312S312delTCA---11B.1.177.830.001481
N312S312delTCA---11B.1.2580.000067
N312S312delTCA---11B.1.258.160.001637
N312S312StcAtcG11B.1.3510.00003
N312S312StcAtcT11B.1.351.30.000876
N312S312StcAtcG11B.1.360.000146
N312S312LtCatTa11B.1.36.290.000517
N312S312LtCatTa11B.1.3690.000285
N312S312StcAtcC11B.1.4000.000429
N312S312delTCA---11B.1.4270.00005
N312S312StcAtcC11B.1.5480.035714
N312S312StcAtcG11B.1.5610.000397
N312S312delTCA---11B.1.6100.003546
N312S312delTCA---11B.1.617.10.000129
N312S312StcAtcG11B.1.617.10.000129
N312S312delTCA---11B.1.617.20.000004
N312S312ATcaGca11B.1.617.20.000004
N312S312PTcaCca11B.1.617.20.000004
N312S312delTCA---11B.1.617.30.002985
N312S312StcAtcG11B.1.6250.002353
N312S312delTCA---11B.1.6300.005236
N312S312LtCatTa11B.4.70.010101
N312S312LtCatTa11C.370.000116
N312S312PTcaCca11D.20.000075
N312S312StcAtcG11D.20.000075
N312S312StcAtcG11P.1.150.000232
N312S312StcAtcG11Q.30.000145
N312S312StcAtcT11Q.80.000165