CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 302 | P302P | syn | ccG | ccT | 23811 | 22189 | 0.93188 | 29177-29179 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 302 | P302P | ccG | ccT | 22189 | 23811 | All | 0.004244 |
N | 302 | P302P | ccG | ccT | 5314 | 5384 | AY.4 | 0.008271 |
N | 302 | P302P | ccG | ccT | 3165 | 3165 | B.1.497 | 0.996223 |
N | 302 | P302P | ccG | ccT | 1692 | 1893 | B.1.1.7 | 0.001515 |
N | 302 | P302P | ccG | ccT | 1629 | 1629 | B.1.36.36 | 0.980734 |
N | 302 | P302P | ccG | ccT | 1520 | 1520 | B.1.177.15 | 0.958991 |
N | 302 | P302P | ccG | ccT | 1089 | 1089 | B.1.177.46 | 1 |
N | 302 | P302P | ccG | ccT | 684 | 937 | B.1.617.2 | 0.002576 |
N | 302 | P302P | ccG | ccT | 683 | 687 | AY.39 | 0.016878 |
N | 302 | P302P | ccG | ccT | 451 | 505 | AY.43 | 0.001998 |
N | 302 | P302P | ccG | ccT | 280 | 301 | AY.103 | 0.001739 |
N | 302 | P302P | ccG | ccT | 292 | 296 | B.1.160 | 0.009107 |
N | 302 | P302P | ccG | ccT | 292 | 293 | B.1.1.50 | 0.198235 |
N | 302 | P302P | ccG | ccT | 281 | 285 | AY.121 | 0.038024 |
N | 302 | P302P | ccG | ccT | 222 | 249 | AY.25 | 0.001335 |
N | 302 | P302P | ccG | ccT | 230 | 231 | C.14 | 0.995671 |
N | 302 | P302P | ccG | ccT | 202 | 230 | B.1 | 0.00185 |
N | 302 | P302P | ccG | ccT | 192 | 228 | B.1.258 | 0.012777 |
N | 302 | P302P | ccG | ccT | 34 | 219 | AY.20 | 0.001321 |
N | 302 | P302P | ccG | ccT | 198 | 219 | AY.3 | 0.001969 |
N | 302 | P302P | ccG | ccT | 197 | 218 | B.1.2 | 0.001735 |
N | 302 | P302P | ccG | ccT | 175 | 181 | AY.102 | 0.00464 |
N | 302 | P302P | ccG | ccT | 159 | 174 | AY.44 | 0.000968 |
N | 302 | P302P | ccG | ccT | 143 | 167 | AY.99.2 | 0.013179 |
N | 302 | P302P | ccG | ccT | 1 | 162 | B.1.1.63 | 0.000386 |
N | 302 | P302P | ccG | ccT | 107 | 145 | B.1.1 | 0.001941 |
N | 302 | P302P | ccG | ccT | 114 | 144 | B.1.177 | 0.001501 |
N | 302 | P302P | ccG | ccT | 106 | 132 | B.1.427 | 0.005353 |
N | 302 | P302P | ccG | ccT | 130 | 130 | AA.2 | 1 |
N | 302 | P302P | ccG | ccT | 127 | 129 | AY.9.2 | 0.004665 |
N | 302 | P302P | ccG | ccT | 110 | 110 | AA.4 | 1 |
N | 302 | P302P | ccG | ccT | 109 | 109 | AA.7 | 1 |
N | 302 | P302P | ccG | ccT | 104 | 105 | AY.47 | 0.003235 |
N | 302 | P302P | ccG | ccT | 87 | 94 | AY.4.2 | 0.001887 |
N | 302 | P302P | ccG | ccT | 66 | 66 | B.1.582 | 0.032385 |
N | 302 | P302P | ccG | ccT | 13 | 65 | B.1.1.222 | 0.002652 |
N | 302 | P302P | ccG | ccT | 59 | 64 | P.1 | 0.000929 |
N | 302 | P302P | ccG | ccT | 62 | 62 | AA.5 | 1 |
N | 302 | P302P | ccG | ccT | 62 | 62 | AA.6 | 1 |
N | 302 | P302P | ccG | ccT | 57 | 57 | B.1.451 | 0.467213 |
N | 302 | P302P | ccG | ccT | 39 | 56 | B.1.429 | 0.000918 |
N | 302 | P302P | ccG | ccT | 45 | 48 | B.1.1.519 | 0.001787 |
N | 302 | P302P | ccG | ccT | 45 | 45 | AA.8 | 1 |
N | 302 | P302P | ccG | ccT | 45 | 45 | B.1.36.8 | 0.045 |
N | 302 | P302P | ccG | ccT | 33 | 43 | B.1.1.214 | 0.00183 |
N | 302 | P302P | ccG | ccT | 38 | 42 | B.1.526 | 0.000893 |
N | 302 | P302P | ccG | ccT | 29 | 41 | B.1.36 | 0.004231 |
N | 302 | P302P | ccG | ccT | 38 | 38 | AY.12 | 0.01201 |
N | 302 | P302P | ccG | ccT | 38 | 38 | AY.6 | 0.001563 |
N | 302 | P302P | ccG | ccT | 36 | 38 | B.1.351 | 0.00107 |
N | 302 | P302P | ccG | ccT | 37 | 37 | AA.3 | 1 |
N | 302 | P302P | ccG | ccT | 37 | 37 | AY.46.4 | 0.006087 |
N | 302 | P302P | ccG | ccT | 36 | 37 | B.1.637 | 0.002631 |
N | 302 | P302P | ccG | ccT | 36 | 36 | AY.42 | 0.001448 |
N | 302 | P302P | ccG | ccT | 12 | 32 | AY.120 | 0.000446 |
N | 302 | P302P | ccG | ccT | 29 | 32 | AY.29 | 0.000457 |
N | 302 | P302P | ccG | ccT | 29 | 29 | AY.16 | 0.01101 |
N | 302 | P302P | ccG | ccT | 25 | 28 | AY.26 | 0.000708 |
N | 302 | P302P | ccG | ccT | 10 | 27 | AY.61 | 0.001048 |
N | 302 | P302P | ccG | ccT | 22 | 26 | AY.119 | 0.000777 |
N | 302 | P302P | ccG | ccT | 23 | 25 | AY.23 | 0.001604 |
N | 302 | P302P | ccG | ccT | 24 | 25 | AY.5 | 0.000496 |
N | 302 | P302P | ccG | ccT | 11 | 24 | B.1.243 | 0.000765 |
N | 302 | P302P | ccG | ccT | 24 | 24 | S.1 | 0.118812 |
N | 302 | P302P | ccG | ccT | 23 | 23 | B.1.1.369 | 0.010263 |
N | 302 | P302P | ccG | ccT | 23 | 23 | B.1.221 | 0.001634 |
N | 302 | P302P | ccG | ccT | 17 | 22 | AY.39.1 | 0.000673 |
N | 302 | P302P | ccG | ccT | 22 | 22 | B.1.402 | 0.215686 |
N | 302 | P302P | ccG | ccT | 20 | 20 | B.1.617.1 | 0.002579 |
N | 302 | P302P | ccG | ccT | 15 | 20 | C.37 | 0.001741 |
N | 302 | P302P | ccG | ccT | 16 | 18 | AY.117 | 0.001352 |
N | 302 | P302P | ccG | ccT | 16 | 18 | R.1 | 0.00144 |
N | 302 | P302P | ccG | ccT | 3 | 17 | AY.110 | 0.000338 |
N | 302 | P302P | ccG | ccT | 16 | 16 | AY.4.5 | 0.00172 |
N | 302 | P302P | ccG | ccT | 12 | 16 | AY.9.1 | 0.001005 |
N | 302 | P302P | ccG | ccT | 16 | 16 | B.1.177.21 | 0.001224 |
N | 302 | P302P | ccG | ccT | 16 | 16 | Q.1 | 0.002021 |
N | 302 | P302P | ccG | ccT | 15 | 15 | B.1.525 | 0.001697 |
N | 302 | P302P | ccG | ccT | 14 | 14 | AY.106 | 0.004689 |
N | 302 | P302P | ccG | ccT | 5 | 14 | B.1.1.317 | 0.002058 |
N | 302 | P302P | ccG | ccT | 13 | 14 | P.1.14 | 0.000621 |
N | 302 | P302P | ccG | ccT | 11 | 13 | AY.46 | 0.001145 |
N | 302 | P302P | ccG | ccT | 12 | 13 | AY.46.6 | 0.000866 |
N | 302 | P302P | ccG | ccT | 12 | 13 | AY.98 | 0.000948 |
N | 302 | P302P | ccG | ccT | 13 | 13 | B.1.1.318 | 0.003923 |
N | 302 | P302P | ccG | ccT | 12 | 12 | AA.1 | 0.086957 |
N | 302 | P302P | ccG | ccT | 12 | 12 | B.1.1.216 | 0.010686 |
N | 302 | P302P | ccG | ccT | 4 | 12 | B.1.351.2 | 0.00121 |
N | 302 | P302P | ccG | ccT | 7 | 11 | B.1.596 | 0.00061 |
N | 302 | P302P | ccG | ccT | 10 | 10 | AY.33 | 0.000668 |
N | 302 | P302P | ccG | ccT | 2 | 10 | AY.46.2 | 0.001271 |
N | 302 | P302P | ccG | ccT | 3 | 10 | AY.48 | 0.001395 |
N | 302 | P302P | ccG | ccT | 7 | 10 | AY.75 | 0.000392 |
N | 302 | P302P | ccG | ccT | 8 | 10 | B.1.234 | 0.001056 |
N | 302 | P302P | ccG | ccT | 9 | 10 | B.1.236 | 0.01848 |
N | 302 | P302P | ccG | ccT | 9 | 10 | B.1.258.17 | 0.000936 |
N | 302 | P302P | ccG | ccT | 10 | 10 | B.1.362.2 | 0.04717 |
N | 302 | P302P | ccG | ccT | 6 | 9 | AY.100 | 0.000276 |
N | 302 | P302P | ccG | ccT | 4 | 9 | AY.118 | 0.000251 |
N | 302 | P302P | ccG | ccT | 9 | 9 | AY.14 | 0.000792 |
N | 302 | P302P | ccG | ccT | 7 | 9 | B.1.609 | 0.003356 |
N | 302 | P302P | ccG | ccT | 7 | 8 | AY.45 | 0.000852 |
N | 302 | P302P | ccG | ccT | 8 | 8 | B | 0.001022 |
N | 302 | P302P | ccG | ccT | 8 | 8 | B.1.1.1 | 0.002614 |
N | 302 | P302P | ccG | ccT | 8 | 8 | B.1.1.284 | 0.000859 |
N | 302 | P302P | ccG | ccT | 8 | 8 | B.1.1.316 | 0.007401 |
N | 302 | P302P | ccG | ccT | 8 | 8 | B.1.160.14 | 0.016949 |
N | 302 | P302P | ccG | ccT | 8 | 8 | B.1.36.29 | 0.004139 |
N | 302 | P302P | ccG | ccT | 8 | 8 | B.1.595 | 0.002088 |
N | 302 | P302P | ccG | ccT | 8 | 8 | C.36 | 0.007286 |
N | 302 | P302P | ccG | ccT | 3 | 7 | AY.19 | 0.003421 |
N | 302 | P302P | ccG | ccT | 7 | 7 | AY.34 | 0.000679 |
N | 302 | P302P | ccG | ccT | 2 | 7 | AY.98.1 | 0.000097 |
N | 302 | P302P | ccG | ccT | 7 | 7 | B.1.1.28 | 0.002179 |
N | 302 | P302P | ccG | ccT | 7 | 7 | B.1.1.301 | 0.008255 |
N | 302 | P302P | ccG | ccT | 7 | 7 | B.1.110.3 | 0.005029 |
N | 302 | P302P | ccG | ccT | 7 | 7 | B.1.316 | 0.777778 |
N | 302 | P302P | ccG | ccT | 6 | 7 | B.1.36.17 | 0.002964 |
N | 302 | P302P | ccG | ccT | 7 | 7 | C.36.3 | 0.003971 |
N | 302 | P302P | ccG | ccT | 6 | 6 | A.2 | 0.003971 |
N | 302 | P302P | ccG | ccT | 2 | 6 | AY.54 | 0.000191 |
N | 302 | P302P | ccG | ccT | 6 | 6 | AY.62 | 0.002614 |
N | 302 | P302P | ccG | ccT | 2 | 6 | AY.75.1 | 0.000361 |
N | 302 | P302P | ccG | ccT | 6 | 6 | AY.9 | 0.000406 |
N | 302 | P302P | ccG | ccT | 6 | 6 | AY.94 | 0.002656 |
N | 302 | P302P | ccG | ccT | 6 | 6 | B.1.177.50 | 0.028169 |
N | 302 | P302P | ccG | ccT | 6 | 6 | B.1.258.14 | 0.005882 |
N | 302 | P302P | ccG | ccT | 6 | 6 | B.1.361 | 0.007732 |
N | 302 | P302P | ccG | ccT | 6 | 6 | B.1.621 | 0.000531 |
N | 302 | P302P | ccG | ccT | 6 | 6 | P.1.1 | 0.001906 |
N | 302 | P302P | ccG | ccT | 4 | 5 | AY.116 | 0.001147 |
N | 302 | P302P | ccG | ccT | 5 | 5 | AY.27 | 0.000324 |
N | 302 | P302P | ccG | ccT | 5 | 5 | AY.4.2.1 | 0.000745 |
N | 302 | P302P | ccG | ccT | 5 | 5 | AY.53 | 0.001438 |
N | 302 | P302P | ccG | ccT | 5 | 5 | AY.59 | 0.002648 |
N | 302 | P302P | ccG | ccT | 5 | 5 | B.1.1.311 | 0.001791 |
N | 302 | P302P | ccG | ccT | 5 | 5 | B.1.111 | 0.005875 |
N | 302 | P302P | ccG | ccT | 4 | 5 | B.1.195 | 0.020101 |
N | 302 | P302P | ccG | ccT | 5 | 5 | B.1.367 | 0.003962 |
N | 302 | P302P | ccG | ccT | 5 | 5 | B.1.398 | 0.014881 |
N | 302 | P302P | ccG | ccT | 5 | 5 | B.1.400 | 0.002145 |
N | 302 | P302P | ccG | ccT | 5 | 5 | B.1.438.1 | 0.000536 |
N | 302 | P302P | ccG | ccT | 3 | 5 | B.1.466.2 | 0.001174 |
N | 302 | P302P | ccG | ccT | 5 | 5 | D.2 | 0.000375 |
N | 302 | P302P | ccG | ccT | 4 | 5 | P.1.15 | 0.000929 |
N | 302 | P302P | ccG | ccT | 3 | 4 | A.2.5 | 0.001497 |
N | 302 | P302P | ccG | ccT | 3 | 4 | AY.10 | 0.00159 |
N | 302 | P302P | ccG | ccT | 4 | 4 | AY.104 | 0.007937 |
N | 302 | P302P | ccG | ccT | 2 | 4 | AY.111 | 0.000366 |
N | 302 | P302P | ccG | ccT | 2 | 4 | AY.113 | 0.000285 |
N | 302 | P302P | ccG | ccT | 2 | 4 | AY.13 | 0.000322 |
N | 302 | P302P | ccG | ccT | 4 | 4 | AY.34.1 | 0.00204 |
N | 302 | P302P | ccG | ccT | 2 | 4 | AY.38 | 0.000999 |
N | 302 | P302P | ccG | ccT | 4 | 4 | AY.41 | 0.001176 |
N | 302 | P302P | ccG | ccT | 3 | 4 | AY.67 | 0.001393 |
N | 302 | P302P | ccG | ccT | 4 | 4 | AY.72 | 0.005442 |
N | 302 | P302P | ccG | ccT | 4 | 4 | AY.91 | 0.002922 |
N | 302 | P302P | ccG | ccT | 4 | 4 | B.1.1.389 | 0.024242 |
N | 302 | P302P | ccG | ccT | 4 | 4 | B.1.177.40 | 0.020619 |
N | 302 | P302P | ccG | ccT | 4 | 4 | B.1.177.45 | 0.001525 |
N | 302 | P302P | ccG | ccT | 4 | 4 | B.1.189 | 0.017167 |
N | 302 | P302P | ccG | ccT | 4 | 4 | B.1.265 | 0.005083 |
N | 302 | P302P | ccG | ccT | 3 | 4 | B.1.311 | 0.000824 |
N | 302 | P302P | ccG | ccT | 4 | 4 | B.1.36.19 | 0.037037 |
N | 302 | P302P | ccG | ccT | 4 | 4 | Q.8 | 0.00066 |
N | 302 | P302P | ccG | ccT | 2 | 3 | A | 0.000774 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.105 | 0.001929 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.120.1 | 0.000963 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.16.1 | 0.00141 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.30 | 0.001187 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.32 | 0.001597 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.37 | 0.000948 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.5.4 | 0.00083 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.68 | 0.000821 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.7.2 | 0.001678 |
N | 302 | P302P | ccG | ccT | 2 | 3 | AY.70 | 0.000417 |
N | 302 | P302P | ccG | ccT | 3 | 3 | AY.92 | 0.000862 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.1.294 | 0.003797 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.1.326 | 0.005282 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.1.349 | 0.030928 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.1.372 | 0.002066 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.1.461 | 0.036145 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.1.71 | 0.018182 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.163 | 0.073171 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.240 | 0.000647 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.428.1 | 0.103448 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.433 | 0.009585 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.462 | 0.021739 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.465 | 0.011407 |
N | 302 | P302P | ccG | ccT | 3 | 3 | B.1.561 | 0.001191 |
N | 302 | P302P | ccG | ccT | 3 | 3 | N.5 | 0.0053 |
N | 302 | P302P | ccG | ccT | 2 | 2 | A.30 | 0.285714 |
N | 302 | P302P | ccG | ccT | 1 | 2 | AY.116.1 | 0.000311 |
N | 302 | P302P | ccG | ccT | 2 | 2 | AY.36 | 0.000296 |
N | 302 | P302P | ccG | ccT | 2 | 2 | AY.4.3 | 0.001684 |
N | 302 | P302P | ccG | ccT | 1 | 2 | AY.4.4 | 0.000409 |
N | 302 | P302P | ccG | ccT | 2 | 2 | AY.40 | 0.001929 |
N | 302 | P302P | ccG | ccT | 2 | 2 | AY.5.3 | 0.000675 |
N | 302 | P302P | ccG | ccT | 2 | 2 | AY.57 | 0.001312 |
N | 302 | P302P | ccG | ccT | 1 | 2 | AY.7.1 | 0.000113 |
N | 302 | P302P | ccG | ccT | 1 | 2 | AY.71 | 0.000475 |
N | 302 | P302P | ccG | ccT | 1 | 2 | AY.73 | 0.000665 |
N | 302 | P302P | ccG | ccT | 2 | 2 | AY.84 | 0.000875 |
N | 302 | P302P | ccG | ccT | 2 | 2 | AY.85 | 0.000854 |
N | 302 | P302P | ccG | ccT | 2 | 2 | AY.99.1 | 0.003106 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.192 | 0.004619 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.266 | 0.02439 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.3 | 0.017391 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.33 | 0.000842 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.371 | 0.020833 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.419 | 0.014815 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.426 | 0.071429 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.432 | 0.002532 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.1.517 | 0.013605 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.157 | 0.00597 |
N | 302 | P302P | ccG | ccT | 1 | 2 | B.1.177.32 | 0.00135 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.177.35 | 0.001382 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.177.65 | 0.001331 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.177.7 | 0.00033 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.177.75 | 0.002081 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.214 | 0.007326 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.336 | 0.004878 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.351.5 | 0.001199 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.36.22 | 0.002415 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.453 | 0.006472 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.459 | 0.008163 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.499 | 0.002101 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.530 | 0.014286 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.575 | 0.000607 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.575.1 | 0.004878 |
N | 302 | P302P | ccG | ccT | 1 | 2 | B.1.597 | 0.00463 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.619.1 | 0.001283 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.1.623 | 0.001073 |
N | 302 | P302P | ccG | ccT | 1 | 2 | B.1.628 | 0.000352 |
N | 302 | P302P | ccG | ccT | 2 | 2 | B.6 | 0.00182 |
N | 302 | P302P | ccG | ccT | 1 | 2 | P.1.10 | 0.000269 |
N | 302 | P302P | ccG | ccT | 2 | 2 | P.1.4 | 0.001953 |
N | 302 | P302P | ccG | ccT | 2 | 2 | P.2 | 0.000373 |
N | 302 | P302P | ccG | ccT | 1 | 2 | P.7 | 0.004367 |
N | 302 | P302P | ccG | ccT | 1 | 1 | A.19 | 0.009434 |
N | 302 | P302P | ccG | ccT | 1 | 1 | A.25 | 0.018182 |
N | 302 | P302P | ccG | ccT | 1 | 1 | A.3 | 0.002096 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.108 | 0.001103 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.109 | 0.00074 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.114 | 0.000231 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.120.2 | 0.001285 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.17 | 0.008197 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.28 | 0.00189 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.29.1 | 0.000221 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.3.1 | 0.000085 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.35 | 0.000233 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.46.1 | 0.001027 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.5.1 | 0.003759 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.52 | 0.000814 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.58 | 0.000907 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.69 | 0.000187 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.7 | 0.000196 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.76 | 0.004831 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.80 | 0.001129 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.81 | 0.001992 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.90 | 0.000684 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.91.1 | 0.004065 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.95 | 0.000761 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AY.96 | 0.002075 |
N | 302 | P302P | ccG | ccT | 1 | 1 | AZ.3 | 0.00152 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.101 | 0.01 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.117 | 0.009709 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.121 | 0.002427 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.138 | 0.006061 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.157 | 0.000913 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.174 | 0.003378 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.203 | 0.016949 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.263 | 0.001558 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.286 | 0.002899 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.302 | 0.002075 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.315 | 0.008475 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.319 | 0.017544 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.322 | 0.008772 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.337 | 0.003597 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.348 | 0.000796 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.366 | 0.015873 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.37 | 0.000193 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.398 | 0.003226 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.409 | 0.002833 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.448 | 0.002033 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.45 | 0.014085 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.521 | 0.005348 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.526 | 0.003546 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.1.53 | 0.013699 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.142 | 0.002899 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.160.10 | 0.008065 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.160.30 | 0.002976 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.160.8 | 0.001289 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.177.31 | 0.011494 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.177.4 | 0.000211 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.177.6 | 0.000977 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.177.73 | 0.000566 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.177.81 | 0.000189 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.210 | 0.002132 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.214.2 | 0.0006 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.22 | 0.001318 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.222 | 0.001692 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.232 | 0.000537 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.239 | 0.001221 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.241 | 0.000812 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.279 | 0.000514 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.337 | 0.005587 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.349 | 0.000715 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.36.1 | 0.00114 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.362 | 0.001541 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.369 | 0.000285 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.375 | 0.00082 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.389 | 0.001002 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.396 | 0.000706 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.399 | 0.001934 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.409 | 0.000781 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.417 | 0.028571 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.426 | 0.001009 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.432 | 0.011236 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.456 | 0.003268 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.466 | 0.023256 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.466.1 | 0.007194 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.540 | 0.009709 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.541 | 0.004425 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.551 | 0.00129 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.564 | 0.000426 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.568 | 0.001111 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.1.619 | 0.000871 |
N | 302 | P302P | ccG | ccT | 1 | 1 | B.4.1 | 0.018868 |
N | 302 | P302P | ccG | ccT | 1 | 1 | L.1 | 0.001905 |
N | 302 | P302P | ccG | ccT | 1 | 1 | N.6 | 0.007092 |
N | 302 | P302P | ccG | ccT | 1 | 1 | P.1.12 | 0.000484 |
N | 302 | P302P | ccG | ccT | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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