CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 300 & Codon = Tat

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	300	H300Y		nonsyn	Cat	Tat	9310	9309	0.999893	29171-29173

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	300	H300Y	Cat	Tat	9309	9310	All	0.00178
N	300	H300Y	Cat	Tat	1774	1774	B.1.1.7	0.001588
N	300	H300Y	Cat	Tat	1301	1301	AY.4	0.002025
N	300	H300Y	Cat	Tat	1003	1003	B.1.617.2	0.003777
N	300	H300Y	Cat	Tat	598	598	B.1.526	0.014056
N	300	H300Y	Cat	Tat	506	506	B.1.177	0.006663
N	300	H300Y	Cat	Tat	296	297	AY.44	0.001802
N	300	H300Y	Cat	Tat	274	274	AY.43	0.001214
N	300	H300Y	Cat	Tat	264	264	AY.103	0.001639
N	300	H300Y	Cat	Tat	200	200	B.1.2	0.001761
N	300	H300Y	Cat	Tat	159	159	AY.25	0.000956
N	300	H300Y	Cat	Tat	151	151	Q.6	1
N	300	H300Y	Cat	Tat	145	145	AY.102	0.003845
N	300	H300Y	Cat	Tat	141	141	AY.3	0.001402
N	300	H300Y	Cat	Tat	132	132	AY.6	0.005429
N	300	H300Y	Cat	Tat	110	110	B.1	0.001008
N	300	H300Y	Cat	Tat	104	104	P.1	0.001638
N	300	H300Y	Cat	Tat	99	99	B.1.621	0.008763
N	300	H300Y	Cat	Tat	82	82	AY.109	0.060651
N	300	H300Y	Cat	Tat	77	77	AY.4.2	0.00167
N	300	H300Y	Cat	Tat	58	58	B.1.160	0.001809
N	300	H300Y	Cat	Tat	56	56	AY.39	0.001384
N	300	H300Y	Cat	Tat	48	48	AY.120	0.001785
N	300	H300Y	Cat	Tat	45	45	B.1.1	0.000816
N	300	H300Y	Cat	Tat	45	45	B.1.429	0.001059
N	300	H300Y	Cat	Tat	44	44	B.1.234	0.005806
N	300	H300Y	Cat	Tat	43	43	B.1.1.519	0.001708
N	300	H300Y	Cat	Tat	40	40	B.1.525	0.004526
N	300	H300Y	Cat	Tat	39	39	B.1.575.1	0.095122
N	300	H300Y	Cat	Tat	37	37	R.1	0.00333
N	300	H300Y	Cat	Tat	35	35	P.1.16	0.013094
N	300	H300Y	Cat	Tat	34	34	AY.94	0.015051
N	300	H300Y	Cat	Tat	34	34	P.1.14	0.001625
N	300	H300Y	Cat	Tat	33	33	AY.12	0.01043
N	300	H300Y	Cat	Tat	33	33	B.1.1.434	0.011502
N	300	H300Y	Cat	Tat	32	32	AY.20	0.001244
N	300	H300Y	Cat	Tat	32	32	B.1.177.40	0.164948
N	300	H300Y	Cat	Tat	31	31	AY.7	0.006076
N	300	H300Y	Cat	Tat	31	31	B.1.1.28	0.009648
N	300	H300Y	Cat	Tat	31	31	B.1.619	0.027003
N	300	H300Y	Cat	Tat	29	29	AY.119	0.001024
N	300	H300Y	Cat	Tat	28	28	AY.26	0.000793
N	300	H300Y	Cat	Tat	28	28	AY.99.2	0.00258
N	300	H300Y	Cat	Tat	26	26	AY.3.1	0.002217
N	300	H300Y	Cat	Tat	25	25	AY.29	0.000394
N	300	H300Y	Cat	Tat	25	25	B.1.561	0.009925
N	300	H300Y	Cat	Tat	25	25	B.1.637	0.001827
N	300	H300Y	Cat	Tat	24	24	AY.100	0.001104
N	300	H300Y	Cat	Tat	24	24	AY.33	0.001603
N	300	H300Y	Cat	Tat	24	24	AY.5	0.000496
N	300	H300Y	Cat	Tat	24	24	C.37	0.002786
N	300	H300Y	Cat	Tat	23	23	B.1.160.26	0.05569
N	300	H300Y	Cat	Tat	21	21	B.1.628	0.0074
N	300	H300Y	Cat	Tat	20	20	AY.47	0.000622
N	300	H300Y	Cat	Tat	20	20	B.1.214.2	0.01199
N	300	H300Y	Cat	Tat	19	19	B.1.351	0.000565
N	300	H300Y	Cat	Tat	18	18	AY.42	0.000724
N	300	H300Y	Cat	Tat	18	18	B.1.1.204	0.054711
N	300	H300Y	Cat	Tat	15	15	B.1.177.7	0.002473
N	300	H300Y	Cat	Tat	15	15	B.1.596	0.001307
N	300	H300Y	Cat	Tat	15	15	Q.8	0.002474
N	300	H300Y	Cat	Tat	13	13	AY.110	0.001465
N	300	H300Y	Cat	Tat	13	13	AY.45	0.001582
N	300	H300Y	Cat	Tat	12	12	AY.118	0.000752
N	300	H300Y	Cat	Tat	12	12	AY.46	0.001249
N	300	H300Y	Cat	Tat	12	12	AY.61	0.001257
N	300	H300Y	Cat	Tat	12	12	AY.98	0.000948
N	300	H300Y	Cat	Tat	12	12	B	0.001534
N	300	H300Y	Cat	Tat	12	12	B.1.177.44	0.006227
N	300	H300Y	Cat	Tat	10	10	AY.105	0.006431
N	300	H300Y	Cat	Tat	10	10	AY.46.6	0.000722
N	300	H300Y	Cat	Tat	10	10	B.1.210	0.021322
N	300	H300Y	Cat	Tat	10	10	B.1.427	0.000505
N	300	H300Y	Cat	Tat	10	10	P.1.7	0.003193
N	300	H300Y	Cat	Tat	9	9	B.1.369	0.002567
N	300	H300Y	Cat	Tat	8	8	AD.2	0.001752
N	300	H300Y	Cat	Tat	8	8	B.1.1.214	0.000444
N	300	H300Y	Cat	Tat	8	8	B.1.1.416	0.00724
N	300	H300Y	Cat	Tat	8	8	B.1.177.16	0.005316
N	300	H300Y	Cat	Tat	8	8	B.1.243	0.000557
N	300	H300Y	Cat	Tat	8	8	B.1.258.17	0.000832
N	300	H300Y	Cat	Tat	7	7	AY.117	0.000592
N	300	H300Y	Cat	Tat	7	7	AY.75	0.000392
N	300	H300Y	Cat	Tat	7	7	B.1.1.210	0.04
N	300	H300Y	Cat	Tat	7	7	B.1.146	0.029661
N	300	H300Y	Cat	Tat	7	7	B.1.36	0.001021
N	300	H300Y	Cat	Tat	7	7	B.1.516	0.013699
N	300	H300Y	Cat	Tat	7	7	B.1.621.1	0.003541
N	300	H300Y	Cat	Tat	6	6	AY.23	0.000418
N	300	H300Y	Cat	Tat	6	6	AY.59	0.003178
N	300	H300Y	Cat	Tat	6	6	AY.74	0.000694
N	300	H300Y	Cat	Tat	6	6	AY.86	0.004979
N	300	H300Y	Cat	Tat	6	6	B.1.1.298	0.005172
N	300	H300Y	Cat	Tat	6	6	B.1.258	0.000399
N	300	H300Y	Cat	Tat	6	6	B.1.617.1	0.000774
N	300	H300Y	Cat	Tat	6	6	P.1.15	0.001394
N	300	H300Y	Cat	Tat	6	6	P.2	0.00112
N	300	H300Y	Cat	Tat	5	5	A.19	0.04717
N	300	H300Y	Cat	Tat	5	5	AY.114	0.001156
N	300	H300Y	Cat	Tat	5	5	AY.14	0.00044
N	300	H300Y	Cat	Tat	5	5	B.1.1.222	0.00102
N	300	H300Y	Cat	Tat	5	5	B.1.177.8	0.003762
N	300	H300Y	Cat	Tat	5	5	B.1.396	0.003529
N	300	H300Y	Cat	Tat	5	5	D.2	0.000375
N	300	H300Y	Cat	Tat	4	4	AY.34	0.000388
N	300	H300Y	Cat	Tat	4	4	AY.7.2	0.002237
N	300	H300Y	Cat	Tat	4	4	AY.79	0.004843
N	300	H300Y	Cat	Tat	4	4	AY.9	0.00027
N	300	H300Y	Cat	Tat	4	4	AY.9.2	0.000147
N	300	H300Y	Cat	Tat	4	4	B.1.1.284	0.00043
N	300	H300Y	Cat	Tat	4	4	B.1.1.39	0.002039
N	300	H300Y	Cat	Tat	4	4	B.1.160.29	0.016878
N	300	H300Y	Cat	Tat	4	4	B.1.551	0.005161
N	300	H300Y	Cat	Tat	4	4	B.1.560	0.018519
N	300	H300Y	Cat	Tat	4	4	Q.2	0.002454
N	300	H300Y	Cat	Tat	3	3	A.2.5.2	0.004717
N	300	H300Y	Cat	Tat	3	3	AY.4.3	0.002525
N	300	H300Y	Cat	Tat	3	3	AY.4.5	0.000322
N	300	H300Y	Cat	Tat	3	3	AY.5.4	0.00083
N	300	H300Y	Cat	Tat	3	3	AY.54	0.000286
N	300	H300Y	Cat	Tat	3	3	AY.55	0.002752
N	300	H300Y	Cat	Tat	3	3	AY.62	0.001307
N	300	H300Y	Cat	Tat	3	3	AY.7.1	0.000338
N	300	H300Y	Cat	Tat	3	3	AY.77	0.003382
N	300	H300Y	Cat	Tat	3	3	B.1.1.25	0.001706
N	300	H300Y	Cat	Tat	3	3	B.1.1.312	0.005736
N	300	H300Y	Cat	Tat	3	3	B.1.1.317	0.001235
N	300	H300Y	Cat	Tat	3	3	B.1.1.318	0.000905
N	300	H300Y	Cat	Tat	3	3	B.1.177.81	0.000568
N	300	H300Y	Cat	Tat	3	3	B.1.221	0.000213
N	300	H300Y	Cat	Tat	3	3	B.1.265	0.003812
N	300	H300Y	Cat	Tat	3	3	B.1.517	0.001281
N	300	H300Y	Cat	Tat	3	3	B.1.595	0.000783
N	300	H300Y	Cat	Tat	3	3	B.1.609	0.001438
N	300	H300Y	Cat	Tat	3	3	B.1.93	0.002801
N	300	H300Y	Cat	Tat	3	3	C.1	0.007177
N	300	H300Y	Cat	Tat	3	3	C.35	0.002322
N	300	H300Y	Cat	Tat	3	3	P.1.11	0.030612
N	300	H300Y	Cat	Tat	3	3	Q.1	0.000379
N	300	H300Y	Cat	Tat	2	2	A.2.5	0.000998
N	300	H300Y	Cat	Tat	2	2	A.23.1	0.001408
N	300	H300Y	Cat	Tat	2	2	AE.8	0.000978
N	300	H300Y	Cat	Tat	2	2	AY.104	0.003968
N	300	H300Y	Cat	Tat	2	2	AY.106	0.00067
N	300	H300Y	Cat	Tat	2	2	AY.120.2	0.002571
N	300	H300Y	Cat	Tat	2	2	AY.121	0.000271
N	300	H300Y	Cat	Tat	2	2	AY.16	0.000759
N	300	H300Y	Cat	Tat	2	2	AY.35	0.000466
N	300	H300Y	Cat	Tat	2	2	AY.39.1	0.000079
N	300	H300Y	Cat	Tat	2	2	AY.49	0.00639
N	300	H300Y	Cat	Tat	2	2	AY.8	0.001212
N	300	H300Y	Cat	Tat	2	2	AY.89	0.009804
N	300	H300Y	Cat	Tat	2	2	AY.91	0.001461
N	300	H300Y	Cat	Tat	2	2	B.1.1.251	0.015873
N	300	H300Y	Cat	Tat	2	2	B.1.1.305	0.007722
N	300	H300Y	Cat	Tat	2	2	B.1.1.311	0.000716
N	300	H300Y	Cat	Tat	2	2	B.1.1.33	0.000842
N	300	H300Y	Cat	Tat	2	2	B.1.1.337	0.007194
N	300	H300Y	Cat	Tat	2	2	B.1.1.351	0.005587
N	300	H300Y	Cat	Tat	2	2	B.1.1.37	0.000386
N	300	H300Y	Cat	Tat	2	2	B.1.1.413	0.013793
N	300	H300Y	Cat	Tat	2	2	B.1.1.417	0.005405
N	300	H300Y	Cat	Tat	2	2	B.1.110.3	0.001437
N	300	H300Y	Cat	Tat	2	2	B.1.111	0.00235
N	300	H300Y	Cat	Tat	2	2	B.1.147	0.001512
N	300	H300Y	Cat	Tat	2	2	B.1.177.21	0.000153
N	300	H300Y	Cat	Tat	2	2	B.1.177.4	0.000422
N	300	H300Y	Cat	Tat	2	2	B.1.177.73	0.001133
N	300	H300Y	Cat	Tat	2	2	B.1.177.75	0.002081
N	300	H300Y	Cat	Tat	2	2	B.1.177.86	0.000367
N	300	H300Y	Cat	Tat	2	2	B.1.240	0.000431
N	300	H300Y	Cat	Tat	2	2	B.1.260	0.006689
N	300	H300Y	Cat	Tat	2	2	B.1.349	0.00143
N	300	H300Y	Cat	Tat	2	2	B.1.36.29	0.001035
N	300	H300Y	Cat	Tat	2	2	B.1.377	0.009132
N	300	H300Y	Cat	Tat	2	2	B.1.530	0.014286
N	300	H300Y	Cat	Tat	2	2	B.1.575	0.000607
N	300	H300Y	Cat	Tat	2	2	Z.1	0.00578
N	300	H300Y	Cat	Tat	1	1	A.2	0.000662
N	300	H300Y	Cat	Tat	1	1	AE.1	0.011364
N	300	H300Y	Cat	Tat	1	1	AT.1	0.005128
N	300	H300Y	Cat	Tat	1	1	AU.1	0.001266
N	300	H300Y	Cat	Tat	1	1	AU.2	0.002421
N	300	H300Y	Cat	Tat	1	1	AY.113	0.000142
N	300	H300Y	Cat	Tat	1	1	AY.116	0.000287
N	300	H300Y	Cat	Tat	1	1	AY.19	0.00114
N	300	H300Y	Cat	Tat	1	1	AY.23.1	0.000417
N	300	H300Y	Cat	Tat	1	1	AY.27	0.000065
N	300	H300Y	Cat	Tat	1	1	AY.29.1	0.000221
N	300	H300Y	Cat	Tat	1	1	AY.30	0.000396
N	300	H300Y	Cat	Tat	1	1	AY.36	0.000148
N	300	H300Y	Cat	Tat	1	1	AY.37	0.000316
N	300	H300Y	Cat	Tat	1	1	AY.38	0.000499
N	300	H300Y	Cat	Tat	1	1	AY.39.1.1	0.000725
N	300	H300Y	Cat	Tat	1	1	AY.4.2.1	0.000149
N	300	H300Y	Cat	Tat	1	1	AY.46.5	0.000198
N	300	H300Y	Cat	Tat	1	1	AY.5.3	0.000337
N	300	H300Y	Cat	Tat	1	1	AY.52	0.000814
N	300	H300Y	Cat	Tat	1	1	AY.63	0.000387
N	300	H300Y	Cat	Tat	1	1	AY.64	0.000595
N	300	H300Y	Cat	Tat	1	1	AY.68	0.000274
N	300	H300Y	Cat	Tat	1	1	AY.69	0.000187
N	300	H300Y	Cat	Tat	1	1	AY.73	0.000665
N	300	H300Y	Cat	Tat	1	1	AY.75.1	0.00018
N	300	H300Y	Cat	Tat	1	1	AY.85	0.000427
N	300	H300Y	Cat	Tat	1	1	AY.9.1	0.000084
N	300	H300Y	Cat	Tat	1	1	AY.96	0.002075
N	300	H300Y	Cat	Tat	1	1	B.1.1.1	0.000327
N	300	H300Y	Cat	Tat	1	1	B.1.1.10	0.001115
N	300	H300Y	Cat	Tat	1	1	B.1.1.128	0.007092
N	300	H300Y	Cat	Tat	1	1	B.1.1.135	0.004695
N	300	H300Y	Cat	Tat	1	1	B.1.1.157	0.000913
N	300	H300Y	Cat	Tat	1	1	B.1.1.220	0.001859
N	300	H300Y	Cat	Tat	1	1	B.1.1.221	0.010101
N	300	H300Y	Cat	Tat	1	1	B.1.1.263	0.001558
N	300	H300Y	Cat	Tat	1	1	B.1.1.269	0.001353
N	300	H300Y	Cat	Tat	1	1	B.1.1.294	0.001266
N	300	H300Y	Cat	Tat	1	1	B.1.1.306	0.000438
N	300	H300Y	Cat	Tat	1	1	B.1.1.316	0.000925
N	300	H300Y	Cat	Tat	1	1	B.1.1.326	0.001761
N	300	H300Y	Cat	Tat	1	1	B.1.1.348	0.000796
N	300	H300Y	Cat	Tat	1	1	B.1.1.349	0.010309
N	300	H300Y	Cat	Tat	1	1	B.1.1.372	0.000689
N	300	H300Y	Cat	Tat	1	1	B.1.1.378	0.007299
N	300	H300Y	Cat	Tat	1	1	B.1.1.486	0.001577
N	300	H300Y	Cat	Tat	1	1	B.1.1.50	0.000679
N	300	H300Y	Cat	Tat	1	1	B.1.1.500	0.02
N	300	H300Y	Cat	Tat	1	1	B.1.1.523	0.001563
N	300	H300Y	Cat	Tat	1	1	B.1.1.70	0.000341
N	300	H300Y	Cat	Tat	1	1	B.1.103	0.019231
N	300	H300Y	Cat	Tat	1	1	B.1.139	0.000733
N	300	H300Y	Cat	Tat	1	1	B.1.160.8	0.001289
N	300	H300Y	Cat	Tat	1	1	B.1.177.11	0.001698
N	300	H300Y	Cat	Tat	1	1	B.1.177.15	0.000631
N	300	H300Y	Cat	Tat	1	1	B.1.177.38	0.010417
N	300	H300Y	Cat	Tat	1	1	B.1.177.45	0.000381
N	300	H300Y	Cat	Tat	1	1	B.1.177.46	0.000918
N	300	H300Y	Cat	Tat	1	1	B.1.177.48	0.003125
N	300	H300Y	Cat	Tat	1	1	B.1.177.60	0.000218
N	300	H300Y	Cat	Tat	1	1	B.1.177.62	0.001192
N	300	H300Y	Cat	Tat	1	1	B.1.221.3	0.000833
N	300	H300Y	Cat	Tat	1	1	B.1.222	0.001692
N	300	H300Y	Cat	Tat	1	1	B.1.238	0.014925
N	300	H300Y	Cat	Tat	1	1	B.1.311	0.000275
N	300	H300Y	Cat	Tat	1	1	B.1.351.2	0.000303
N	300	H300Y	Cat	Tat	1	1	B.1.36.16	0.001425
N	300	H300Y	Cat	Tat	1	1	B.1.36.17	0.000494
N	300	H300Y	Cat	Tat	1	1	B.1.36.18	0.00042
N	300	H300Y	Cat	Tat	1	1	B.1.36.20	0.016949
N	300	H300Y	Cat	Tat	1	1	B.1.36.8	0.001
N	300	H300Y	Cat	Tat	1	1	B.1.367	0.000792
N	300	H300Y	Cat	Tat	1	1	B.1.397	0.004854
N	300	H300Y	Cat	Tat	1	1	B.1.409	0.000781
N	300	H300Y	Cat	Tat	1	1	B.1.422	0.000812
N	300	H300Y	Cat	Tat	1	1	B.1.456	0.003268
N	300	H300Y	Cat	Tat	1	1	B.1.466	0.023256
N	300	H300Y	Cat	Tat	1	1	B.1.470	0.001404
N	300	H300Y	Cat	Tat	1	1	B.1.473	0.019231
N	300	H300Y	Cat	Tat	1	1	B.1.485	0.014925
N	300	H300Y	Cat	Tat	1	1	B.1.497	0.000315
N	300	H300Y	Cat	Tat	1	1	B.1.505	0.004386
N	300	H300Y	Cat	Tat	1	1	B.1.527	0.003704
N	300	H300Y	Cat	Tat	1	1	B.1.538	0.008065
N	300	H300Y	Cat	Tat	1	1	B.1.549	0.007194
N	300	H300Y	Cat	Tat	1	1	B.1.568	0.001111
N	300	H300Y	Cat	Tat	1	1	B.1.582	0.000491
N	300	H300Y	Cat	Tat	1	1	B.1.587	0.001898
N	300	H300Y	Cat	Tat	1	1	B.1.588	0.00091
N	300	H300Y	Cat	Tat	1	1	B.1.604	0.017241
N	300	H300Y	Cat	Tat	1	1	B.1.619.1	0.000641
N	300	H300Y	Cat	Tat	1	1	B.1.623	0.000536
N	300	H300Y	Cat	Tat	1	1	B.1.625	0.002353
N	300	H300Y	Cat	Tat	1	1	B.1.636	0.006711
N	300	H300Y	Cat	Tat	1	1	B.11	0.005128
N	300	H300Y	Cat	Tat	1	1	B.40	0.000364
N	300	H300Y	Cat	Tat	1	1	B.52	0.010101
N	300	H300Y	Cat	Tat	1	1	B.55	0.00295
N	300	H300Y	Cat	Tat	1	1	B.6	0.00091
N	300	H300Y	Cat	Tat	1	1	C.11	0.010638
N	300	H300Y	Cat	Tat	1	1	C.36.3	0.000567
N	300	H300Y	Cat	Tat	1	1	C.37.1	0.002618
N	300	H300Y	Cat	Tat	1	1	P.1.1	0.000318
N	300	H300Y	Cat	Tat	1	1	P.1.10	0.000269
N	300	H300Y	Cat	Tat	1	1	P.1.12	0.000484
N	300	H300Y	Cat	Tat	1	1	P.1.8	0.004785
N	300	H300Y	Cat	Tat	1	1	Q.3	0.000145
N	300	H300Y	Cat	Tat	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.