CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 300 | H300Y | nonsyn | Cat | Tat | 9310 | 9309 | 0.999893 | 29171-29173 | |
N | 300 | H300Y | nonsyn | CaT | TaC | 9310 | 1 | 0.000107411 | 29171-29173 | |
N | 300 | H300H | syn | caT | caC | 547 | 547 | 1 | 29171-29173 | |
N | 300 | H300R | nonsyn | cAt | cGt | 539 | 535 | 0.992579 | 29171-29173 | |
N | 300 | H300R | nonsyn | cAT | cGC | 539 | 3 | 0.00556586 | 29171-29173 | |
N | 300 | H300R | nonsyn | cAT | cGA | 539 | 1 | 0.00185529 | 29171-29173 | |
N | 300 | H300Q | nonsyn | caT | caG | 210 | 132 | 0.628571 | 29171-29173 | |
N | 300 | H300Q | nonsyn | caT | caA | 210 | 78 | 0.371429 | 29171-29173 | |
N | 300 | H300L | nonsyn | cAt | cTt | 118 | 117 | 0.991525 | 29171-29173 | |
N | 300 | H300L | nonsyn | cAT | cTG | 118 | 1 | 0.00847458 | 29171-29173 | |
N | 300 | H300N | nonsyn | Cat | Aat | 21 | 20 | 0.952381 | 29171-29173 | |
N | 300 | H300N | nonsyn | CaT | AaC | 21 | 1 | 0.047619 | 29171-29173 | |
N | 300 | H300del | del | CAT | --- | 17 | 17 | 1 | 29171-29173 | |
N | 300 | H300D | nonsyn | Cat | Gat | 16 | 16 | 1 | 29171-29173 | |
N | 300 | H300P | nonsyn | cAt | cCt | 15 | 14 | 0.933333 | 29171-29173 | |
N | 300 | H300P | nonsyn | cAT | cCC | 15 | 1 | 0.0666667 | 29171-29173 | |
N | 300 | H300T | nonsyn | CAt | ACt | 2 | 1 | 0.5 | 29171-29173 | |
N | 300 | H300T | nonsyn | CAT | ACC | 2 | 1 | 0.5 | 29171-29173 | |
N | 300 | H300del2 | del | cAT | c-- | 2 | 1 | 0.5 | 29171-29173 | |
N | 300 | H300del2 | del | CAt | --t | 2 | 1 | 0.5 | 29171-29173 | |
N | 300 | H300C | nonsyn | CAt | TGt | 1 | 1 | 1 | 29171-29173 | |
N | 300 | H300F | nonsyn | CAt | TTt | 1 | 1 | 1 | 29171-29173 | |
N | 300 | H300G | nonsyn | CAt | GGt | 1 | 1 | 1 | 29171-29173 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 300 | H300Y | Cat | Tat | 9309 | 9310 | All | 0.00178 |
N | 300 | H300Y | CaT | TaC | 1 | 9310 | All | 0 |
N | 300 | H300Y | Cat | Tat | 1774 | 1774 | B.1.1.7 | 0.001588 |
N | 300 | H300Y | Cat | Tat | 1301 | 1301 | AY.4 | 0.002025 |
N | 300 | H300Y | Cat | Tat | 1003 | 1003 | B.1.617.2 | 0.003777 |
N | 300 | H300Y | Cat | Tat | 598 | 598 | B.1.526 | 0.014056 |
N | 300 | H300H | caT | caC | 547 | 547 | All | 0.000105 |
N | 300 | H300R | cAt | cGt | 535 | 539 | All | 0.000102 |
N | 300 | H300R | cAT | cGC | 3 | 539 | All | 0.000001 |
N | 300 | H300R | cAT | cGA | 1 | 539 | All | 0 |
N | 300 | H300Y | Cat | Tat | 506 | 506 | B.1.177 | 0.006663 |
N | 300 | H300Y | Cat | Tat | 296 | 297 | AY.44 | 0.001802 |
N | 300 | H300Y | CaT | TaC | 1 | 297 | AY.44 | 0.000006 |
N | 300 | H300Y | Cat | Tat | 274 | 274 | AY.43 | 0.001214 |
N | 300 | H300Y | Cat | Tat | 264 | 264 | AY.103 | 0.001639 |
N | 300 | H300R | cAt | cGt | 250 | 250 | AY.43 | 0.001108 |
N | 300 | H300Q | caT | caG | 132 | 210 | All | 0.000025 |
N | 300 | H300Q | caT | caA | 78 | 210 | All | 0.000015 |
N | 300 | H300Y | Cat | Tat | 200 | 200 | B.1.2 | 0.001761 |
N | 300 | H300Y | Cat | Tat | 159 | 159 | AY.25 | 0.000956 |
N | 300 | H300Y | Cat | Tat | 151 | 151 | Q.6 | 1 |
N | 300 | H300Y | Cat | Tat | 145 | 145 | AY.102 | 0.003845 |
N | 300 | H300H | caT | caC | 143 | 143 | B.1.617.2 | 0.000538 |
N | 300 | H300Y | Cat | Tat | 141 | 141 | AY.3 | 0.001402 |
N | 300 | H300Y | Cat | Tat | 132 | 132 | AY.6 | 0.005429 |
N | 300 | H300L | cAt | cTt | 117 | 118 | All | 0.000022 |
N | 300 | H300L | cAT | cTG | 1 | 118 | All | 0 |
N | 300 | H300Y | Cat | Tat | 110 | 110 | B.1 | 0.001008 |
N | 300 | H300Y | Cat | Tat | 104 | 104 | P.1 | 0.001638 |
N | 300 | H300Y | Cat | Tat | 99 | 99 | B.1.621 | 0.008763 |
N | 300 | H300Y | Cat | Tat | 82 | 82 | AY.109 | 0.060651 |
N | 300 | H300H | caT | caC | 80 | 80 | C.16 | 0.084836 |
N | 300 | H300Y | Cat | Tat | 77 | 77 | AY.4.2 | 0.00167 |
N | 300 | H300R | cAt | cGt | 72 | 72 | B.1.617.2 | 0.000271 |
N | 300 | H300R | cAt | cGt | 67 | 68 | B.1.1.7 | 0.00006 |
N | 300 | H300R | cAT | cGA | 1 | 68 | B.1.1.7 | 0.000001 |
N | 300 | H300Y | Cat | Tat | 58 | 58 | B.1.160 | 0.001809 |
N | 300 | H300Y | Cat | Tat | 56 | 56 | AY.39 | 0.001384 |
N | 300 | H300H | caT | caC | 50 | 50 | B.1.1.7 | 0.000045 |
N | 300 | H300Q | caT | caA | 41 | 49 | AY.4 | 0.000064 |
N | 300 | H300Q | caT | caG | 8 | 49 | AY.4 | 0.000012 |
N | 300 | H300Y | Cat | Tat | 48 | 48 | AY.120 | 0.001785 |
N | 300 | H300L | cAt | cTt | 48 | 48 | B.1.1.7 | 0.000043 |
N | 300 | H300Y | Cat | Tat | 45 | 45 | B.1.1 | 0.000816 |
N | 300 | H300Y | Cat | Tat | 45 | 45 | B.1.429 | 0.001059 |
N | 300 | H300Y | Cat | Tat | 44 | 44 | B.1.234 | 0.005806 |
N | 300 | H300Y | Cat | Tat | 43 | 43 | B.1.1.519 | 0.001708 |
N | 300 | H300Q | caT | caG | 42 | 42 | B.1.466.2 | 0.016432 |
N | 300 | H300R | cAt | cGt | 41 | 41 | AY.103 | 0.000255 |
N | 300 | H300Y | Cat | Tat | 40 | 40 | B.1.525 | 0.004526 |
N | 300 | H300Y | Cat | Tat | 39 | 39 | B.1.575.1 | 0.095122 |
N | 300 | H300H | caT | caC | 38 | 38 | AY.43 | 0.000168 |
N | 300 | H300Y | Cat | Tat | 37 | 37 | R.1 | 0.00333 |
N | 300 | H300Y | Cat | Tat | 35 | 35 | P.1.16 | 0.013094 |
N | 300 | H300Y | Cat | Tat | 34 | 34 | AY.94 | 0.015051 |
N | 300 | H300Y | Cat | Tat | 34 | 34 | P.1.14 | 0.001625 |
N | 300 | H300Y | Cat | Tat | 33 | 33 | AY.12 | 0.01043 |
N | 300 | H300Y | Cat | Tat | 33 | 33 | B.1.1.434 | 0.011502 |
N | 300 | H300Y | Cat | Tat | 32 | 32 | AY.20 | 0.001244 |
N | 300 | H300Y | Cat | Tat | 32 | 32 | B.1.177.40 | 0.164948 |
N | 300 | H300Y | Cat | Tat | 31 | 31 | AY.7 | 0.006076 |
N | 300 | H300Y | Cat | Tat | 31 | 31 | B.1.1.28 | 0.009648 |
N | 300 | H300Y | Cat | Tat | 31 | 31 | B.1.619 | 0.027003 |
N | 300 | H300Y | Cat | Tat | 29 | 29 | AY.119 | 0.001024 |
N | 300 | H300Q | caT | caG | 23 | 29 | B.1.1.7 | 0.000021 |
N | 300 | H300Q | caT | caA | 6 | 29 | B.1.1.7 | 0.000005 |
N | 300 | H300Y | Cat | Tat | 28 | 28 | AY.26 | 0.000793 |
N | 300 | H300Y | Cat | Tat | 28 | 28 | AY.99.2 | 0.00258 |
N | 300 | H300H | caT | caC | 27 | 27 | AY.4 | 0.000042 |
N | 300 | H300Y | Cat | Tat | 26 | 26 | AY.3.1 | 0.002217 |
N | 300 | H300Y | Cat | Tat | 25 | 25 | AY.29 | 0.000394 |
N | 300 | H300Y | Cat | Tat | 25 | 25 | B.1.561 | 0.009925 |
N | 300 | H300Y | Cat | Tat | 25 | 25 | B.1.637 | 0.001827 |
N | 300 | H300Y | Cat | Tat | 24 | 24 | AY.100 | 0.001104 |
N | 300 | H300Y | Cat | Tat | 24 | 24 | AY.33 | 0.001603 |
N | 300 | H300Y | Cat | Tat | 24 | 24 | AY.5 | 0.000496 |
N | 300 | H300Y | Cat | Tat | 24 | 24 | C.37 | 0.002786 |
N | 300 | H300L | cAt | cTt | 23 | 23 | AY.43 | 0.000102 |
N | 300 | H300Y | Cat | Tat | 23 | 23 | B.1.160.26 | 0.05569 |
N | 300 | H300N | Cat | Aat | 20 | 21 | All | 0.000004 |
N | 300 | H300N | CaT | AaC | 1 | 21 | All | 0 |
N | 300 | H300Y | Cat | Tat | 21 | 21 | B.1.628 | 0.0074 |
N | 300 | H300Y | Cat | Tat | 20 | 20 | AY.47 | 0.000622 |
N | 300 | H300Y | Cat | Tat | 20 | 20 | B.1.214.2 | 0.01199 |
N | 300 | H300Q | caT | caA | 19 | 19 | AY.4.5 | 0.002042 |
N | 300 | H300Y | Cat | Tat | 19 | 19 | B.1.351 | 0.000565 |
N | 300 | H300H | caT | caC | 19 | 19 | C.38 | 0.153226 |
N | 300 | H300Y | Cat | Tat | 18 | 18 | AY.42 | 0.000724 |
N | 300 | H300Y | Cat | Tat | 18 | 18 | B.1.1.204 | 0.054711 |
N | 300 | H300H | caT | caC | 18 | 18 | P.1.15 | 0.004182 |
N | 300 | H300del | CAT | --- | 17 | 17 | All | 0.000003 |
N | 300 | H300D | Cat | Gat | 16 | 16 | All | 0.000003 |
N | 300 | H300R | cAt | cGt | 16 | 16 | AY.4 | 0.000025 |
N | 300 | H300P | cAt | cCt | 14 | 15 | All | 0.000003 |
N | 300 | H300P | cAT | cCC | 1 | 15 | All | 0 |
N | 300 | H300Y | Cat | Tat | 15 | 15 | B.1.177.7 | 0.002473 |
N | 300 | H300H | caT | caC | 15 | 15 | B.1.429 | 0.000353 |
N | 300 | H300Y | Cat | Tat | 15 | 15 | B.1.596 | 0.001307 |
N | 300 | H300Y | Cat | Tat | 15 | 15 | Q.8 | 0.002474 |
N | 300 | H300Y | Cat | Tat | 13 | 13 | AY.110 | 0.001465 |
N | 300 | H300Y | Cat | Tat | 13 | 13 | AY.45 | 0.001582 |
N | 300 | H300R | cAt | cGt | 13 | 13 | P.1 | 0.000205 |
N | 300 | H300Y | Cat | Tat | 12 | 12 | AY.118 | 0.000752 |
N | 300 | H300Y | Cat | Tat | 12 | 12 | AY.46 | 0.001249 |
N | 300 | H300Y | Cat | Tat | 12 | 12 | AY.61 | 0.001257 |
N | 300 | H300Y | Cat | Tat | 12 | 12 | AY.98 | 0.000948 |
N | 300 | H300Y | Cat | Tat | 12 | 12 | B | 0.001534 |
N | 300 | H300Q | caT | caG | 12 | 12 | B.1.177 | 0.000158 |
N | 300 | H300Y | Cat | Tat | 12 | 12 | B.1.177.44 | 0.006227 |
N | 300 | H300Y | Cat | Tat | 10 | 10 | AY.105 | 0.006431 |
N | 300 | H300Y | Cat | Tat | 10 | 10 | AY.46.6 | 0.000722 |
N | 300 | H300H | caT | caC | 10 | 10 | B.1.2 | 0.000088 |
N | 300 | H300Y | Cat | Tat | 10 | 10 | B.1.210 | 0.021322 |
N | 300 | H300H | caT | caC | 10 | 10 | B.1.240 | 0.002156 |
N | 300 | H300Y | Cat | Tat | 10 | 10 | B.1.427 | 0.000505 |
N | 300 | H300Y | Cat | Tat | 10 | 10 | P.1.7 | 0.003193 |
N | 300 | H300H | caT | caC | 9 | 9 | AY.103 | 0.000056 |
N | 300 | H300R | cAt | cGt | 9 | 9 | AY.44 | 0.000055 |
N | 300 | H300H | caT | caC | 9 | 9 | B.1 | 0.000082 |
N | 300 | H300Y | Cat | Tat | 9 | 9 | B.1.369 | 0.002567 |
N | 300 | H300H | caT | caC | 9 | 9 | B.1.617.1 | 0.001161 |
N | 300 | H300Y | Cat | Tat | 8 | 8 | AD.2 | 0.001752 |
N | 300 | H300L | cAt | cTt | 8 | 8 | AY.4 | 0.000012 |
N | 300 | H300R | cAt | cGt | 8 | 8 | AY.66 | 0.008556 |
N | 300 | H300Y | Cat | Tat | 8 | 8 | B.1.1.214 | 0.000444 |
N | 300 | H300Y | Cat | Tat | 8 | 8 | B.1.1.416 | 0.00724 |
N | 300 | H300D | Cat | Gat | 8 | 8 | B.1.1.7 | 0.000007 |
N | 300 | H300Y | Cat | Tat | 8 | 8 | B.1.177.16 | 0.005316 |
N | 300 | H300Y | Cat | Tat | 8 | 8 | B.1.243 | 0.000557 |
N | 300 | H300Y | Cat | Tat | 8 | 8 | B.1.258.17 | 0.000832 |
N | 300 | H300Q | caT | caG | 8 | 8 | B.1.36 | 0.001167 |
N | 300 | H300H | caT | caC | 7 | 7 | AY.102 | 0.000186 |
N | 300 | H300Y | Cat | Tat | 7 | 7 | AY.117 | 0.000592 |
N | 300 | H300R | cAt | cGt | 7 | 7 | AY.3 | 0.00007 |
N | 300 | H300Y | Cat | Tat | 7 | 7 | AY.75 | 0.000392 |
N | 300 | H300Y | Cat | Tat | 7 | 7 | B.1.1.210 | 0.04 |
N | 300 | H300Y | Cat | Tat | 7 | 7 | B.1.146 | 0.029661 |
N | 300 | H300Y | Cat | Tat | 7 | 7 | B.1.36 | 0.001021 |
N | 300 | H300Y | Cat | Tat | 7 | 7 | B.1.516 | 0.013699 |
N | 300 | H300Y | Cat | Tat | 7 | 7 | B.1.621.1 | 0.003541 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | AY.23 | 0.000418 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | AY.59 | 0.003178 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | AY.74 | 0.000694 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | AY.86 | 0.004979 |
N | 300 | H300Q | caT | caG | 5 | 6 | B.1 | 0.000046 |
N | 300 | H300Q | caT | caA | 1 | 6 | B.1 | 0.000009 |
N | 300 | H300P | cAt | cCt | 6 | 6 | B.1.1.214 | 0.000333 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | B.1.1.298 | 0.005172 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | B.1.258 | 0.000399 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | B.1.617.1 | 0.000774 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | P.1.15 | 0.001394 |
N | 300 | H300Y | Cat | Tat | 6 | 6 | P.2 | 0.00112 |
N | 300 | H300Y | Cat | Tat | 5 | 5 | A.19 | 0.04717 |
N | 300 | H300Y | Cat | Tat | 5 | 5 | AY.114 | 0.001156 |
N | 300 | H300Y | Cat | Tat | 5 | 5 | AY.14 | 0.00044 |
N | 300 | H300L | cAt | cTt | 5 | 5 | AY.25 | 0.00003 |
N | 300 | H300H | caT | caC | 5 | 5 | AY.26 | 0.000142 |
N | 300 | H300R | cAt | cGt | 5 | 5 | AY.39 | 0.000124 |
N | 300 | H300H | caT | caC | 5 | 5 | AY.44 | 0.00003 |
N | 300 | H300H | caT | caC | 5 | 5 | AY.61 | 0.000524 |
N | 300 | H300H | caT | caC | 5 | 5 | B.1.1 | 0.000091 |
N | 300 | H300Y | Cat | Tat | 5 | 5 | B.1.1.222 | 0.00102 |
N | 300 | H300R | cAt | cGt | 5 | 5 | B.1.177 | 0.000066 |
N | 300 | H300Y | Cat | Tat | 5 | 5 | B.1.177.8 | 0.003762 |
N | 300 | H300Y | Cat | Tat | 5 | 5 | B.1.396 | 0.003529 |
N | 300 | H300Y | Cat | Tat | 5 | 5 | D.2 | 0.000375 |
N | 300 | H300R | cAt | cGt | 4 | 4 | AY.20 | 0.000155 |
N | 300 | H300H | caT | caC | 4 | 4 | AY.25 | 0.000024 |
N | 300 | H300Q | caT | caG | 3 | 4 | AY.25 | 0.000018 |
N | 300 | H300Q | caT | caA | 1 | 4 | AY.25 | 0.000006 |
N | 300 | H300L | cAt | cTt | 4 | 4 | AY.29 | 0.000063 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | AY.34 | 0.000388 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | AY.7.2 | 0.002237 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | AY.79 | 0.004843 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | AY.9 | 0.00027 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | AY.9.2 | 0.000147 |
N | 300 | H300H | caT | caC | 4 | 4 | AY.99.2 | 0.000369 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | B.1.1.284 | 0.00043 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | B.1.1.39 | 0.002039 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | B.1.160.29 | 0.016878 |
N | 300 | H300Q | caT | caG | 4 | 4 | B.1.221 | 0.000284 |
N | 300 | H300H | caT | caC | 4 | 4 | B.1.221 | 0.000284 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | B.1.551 | 0.005161 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | B.1.560 | 0.018519 |
N | 300 | H300Q | caT | caG | 4 | 4 | B.1.617.2 | 0.000015 |
N | 300 | H300Y | Cat | Tat | 4 | 4 | Q.2 | 0.002454 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | A.2.5.2 | 0.004717 |
N | 300 | H300H | caT | caC | 3 | 3 | AY.118 | 0.000188 |
N | 300 | H300H | caT | caC | 3 | 3 | AY.120 | 0.000112 |
N | 300 | H300H | caT | caC | 3 | 3 | AY.29.1 | 0.000662 |
N | 300 | H300H | caT | caC | 3 | 3 | AY.30 | 0.001187 |
N | 300 | H300D | Cat | Gat | 3 | 3 | AY.4 | 0.000005 |
N | 300 | H300N | Cat | Aat | 3 | 3 | AY.4 | 0.000005 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | AY.4.3 | 0.002525 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | AY.4.5 | 0.000322 |
N | 300 | H300del | CAT | --- | 3 | 3 | AY.43 | 0.000013 |
N | 300 | H300L | cAt | cTt | 3 | 3 | AY.44 | 0.000018 |
N | 300 | H300Q | caT | caG | 3 | 3 | AY.5 | 0.000062 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | AY.5.4 | 0.00083 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | AY.54 | 0.000286 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | AY.55 | 0.002752 |
N | 300 | H300H | caT | caC | 3 | 3 | AY.6 | 0.000123 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | AY.62 | 0.001307 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | AY.7.1 | 0.000338 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | AY.77 | 0.003382 |
N | 300 | H300Q | caT | caA | 3 | 3 | AY.9 | 0.000203 |
N | 300 | H300R | cAt | cGt | 3 | 3 | B.1.1.198 | 0.004405 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.1.25 | 0.001706 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.1.312 | 0.005736 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.1.317 | 0.001235 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.1.318 | 0.000905 |
N | 300 | H300Q | caT | caG | 3 | 3 | B.1.1.348 | 0.002389 |
N | 300 | H300L | cAt | cTt | 3 | 3 | B.1.1.519 | 0.000119 |
N | 300 | H300N | Cat | Aat | 3 | 3 | B.1.1.7 | 0.000003 |
N | 300 | H300R | cAt | cGt | 3 | 3 | B.1.160 | 0.000094 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.177.81 | 0.000568 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.221 | 0.000213 |
N | 300 | H300H | caT | caC | 3 | 3 | B.1.258.22 | 0.008 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.265 | 0.003812 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.517 | 0.001281 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.595 | 0.000783 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.609 | 0.001438 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | B.1.93 | 0.002801 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | C.1 | 0.007177 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | C.35 | 0.002322 |
N | 300 | H300H | caT | caC | 3 | 3 | D.2 | 0.000225 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | P.1.11 | 0.030612 |
N | 300 | H300Y | Cat | Tat | 3 | 3 | Q.1 | 0.000379 |
N | 300 | H300del | CAT | --- | 2 | 2 | 0.111111 | |
N | 300 | H300Y | Cat | Tat | 2 | 2 | A.2.5 | 0.000998 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | A.23.1 | 0.001408 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AE.8 | 0.000978 |
N | 300 | H300del2 | CAt | --t | 1 | 2 | All | 0 |
N | 300 | H300del2 | cAT | c-- | 1 | 2 | All | 0 |
N | 300 | H300T | CAT | ACC | 1 | 2 | All | 0 |
N | 300 | H300T | CAt | ACt | 1 | 2 | All | 0 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.104 | 0.003968 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.106 | 0.00067 |
N | 300 | H300R | cAt | cGt | 2 | 2 | AY.111 | 0.000366 |
N | 300 | H300H | caT | caC | 2 | 2 | AY.116.1 | 0.000623 |
N | 300 | H300Q | caT | caG | 2 | 2 | AY.117 | 0.000169 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.120.2 | 0.002571 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.121 | 0.000271 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.16 | 0.000759 |
N | 300 | H300R | cAt | cGt | 2 | 2 | AY.16 | 0.000759 |
N | 300 | H300R | cAt | cGt | 1 | 2 | AY.23 | 0.00007 |
N | 300 | H300R | cAT | cGC | 1 | 2 | AY.23 | 0.00007 |
N | 300 | H300N | Cat | Aat | 2 | 2 | AY.3 | 0.00002 |
N | 300 | H300R | cAt | cGt | 2 | 2 | AY.33 | 0.000134 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.35 | 0.000466 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.39.1 | 0.000079 |
N | 300 | H300H | caT | caC | 2 | 2 | AY.4.2 | 0.000043 |
N | 300 | H300N | Cat | Aat | 2 | 2 | AY.4.2 | 0.000043 |
N | 300 | H300N | Cat | Aat | 2 | 2 | AY.43 | 0.000009 |
N | 300 | H300P | cAt | cCt | 2 | 2 | AY.44 | 0.000012 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.49 | 0.00639 |
N | 300 | H300H | caT | caC | 2 | 2 | AY.5 | 0.000041 |
N | 300 | H300Q | caT | caA | 2 | 2 | AY.58 | 0.001815 |
N | 300 | H300Q | caT | caA | 2 | 2 | AY.8 | 0.001212 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.8 | 0.001212 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.89 | 0.009804 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | AY.91 | 0.001461 |
N | 300 | H300R | cAt | cGt | 2 | 2 | B.1 | 0.000018 |
N | 300 | H300del | CAT | --- | 2 | 2 | B.1 | 0.000018 |
N | 300 | H300N | Cat | Aat | 1 | 2 | B.1.1 | 0.000018 |
N | 300 | H300P | cAt | cCt | 1 | 2 | B.1.1 | 0.000018 |
N | 300 | H300N | CaT | AaC | 1 | 2 | B.1.1 | 0.000018 |
N | 300 | H300P | cAT | cCC | 1 | 2 | B.1.1 | 0.000018 |
N | 300 | H300T | CAT | ACC | 1 | 2 | B.1.1 | 0.000018 |
N | 300 | H300T | CAt | ACt | 1 | 2 | B.1.1 | 0.000018 |
N | 300 | H300H | caT | caC | 2 | 2 | B.1.1.1 | 0.000653 |
N | 300 | H300L | cAt | cTt | 2 | 2 | B.1.1.214 | 0.000111 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.251 | 0.015873 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.305 | 0.007722 |
N | 300 | H300Q | caT | caG | 2 | 2 | B.1.1.306 | 0.000877 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.311 | 0.000716 |
N | 300 | H300H | caT | caC | 2 | 2 | B.1.1.318 | 0.000604 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.33 | 0.000842 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.337 | 0.007194 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.351 | 0.005587 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.37 | 0.000386 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.413 | 0.013793 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.1.417 | 0.005405 |
N | 300 | H300R | cAt | cGt | 2 | 2 | B.1.1.519 | 0.000079 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.110.3 | 0.001437 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.111 | 0.00235 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.147 | 0.001512 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.177.21 | 0.000153 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.177.4 | 0.000422 |
N | 300 | H300R | cAt | cGt | 2 | 2 | B.1.177.60 | 0.000437 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.177.73 | 0.001133 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.177.75 | 0.002081 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.177.86 | 0.000367 |
N | 300 | H300L | cAt | cTt | 2 | 2 | B.1.2 | 0.000018 |
N | 300 | H300Q | caT | caG | 2 | 2 | B.1.2 | 0.000018 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.240 | 0.000431 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.260 | 0.006689 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.349 | 0.00143 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.36.29 | 0.001035 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.377 | 0.009132 |
N | 300 | H300H | caT | caC | 2 | 2 | B.1.427 | 0.000101 |
N | 300 | H300R | cAT | cGC | 2 | 2 | B.1.526 | 0.000047 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.530 | 0.014286 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | B.1.575 | 0.000607 |
N | 300 | H300D | Cat | Gat | 2 | 2 | B.1.617.2 | 0.000008 |
N | 300 | H300R | cAt | cGt | 2 | 2 | B.1.621.1 | 0.001012 |
N | 300 | H300H | caT | caC | 2 | 2 | B.1.637 | 0.000146 |
N | 300 | H300H | caT | caC | 2 | 2 | B.31 | 0.007463 |
N | 300 | H300R | cAt | cGt | 2 | 2 | P.1.14 | 0.000096 |
N | 300 | H300Y | Cat | Tat | 2 | 2 | Z.1 | 0.00578 |
N | 300 | H300N | Cat | Aat | 1 | 1 | 0.055556 | |
N | 300 | H300H | caT | caC | 1 | 1 | A | 0.000387 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | A.2 | 0.000662 |
N | 300 | H300H | caT | caC | 1 | 1 | A.2.5 | 0.000499 |
N | 300 | H300P | cAt | cCt | 1 | 1 | A.2.5.2 | 0.001572 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AE.1 | 0.011364 |
N | 300 | H300C | CAt | TGt | 1 | 1 | All | 0 |
N | 300 | H300F | CAt | TTt | 1 | 1 | All | 0 |
N | 300 | H300G | CAt | GGt | 1 | 1 | All | 0 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AT.1 | 0.005128 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AU.1 | 0.001266 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AU.2 | 0.002421 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.101 | 0.00049 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.102 | 0.000027 |
N | 300 | H300N | Cat | Aat | 1 | 1 | AY.103 | 0.000006 |
N | 300 | H300L | cAt | cTt | 1 | 1 | AY.103 | 0.000006 |
N | 300 | H300Q | caT | caG | 1 | 1 | AY.104 | 0.001984 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.106 | 0.000335 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.113 | 0.000142 |
N | 300 | H300N | Cat | Aat | 1 | 1 | AY.114 | 0.000231 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.116 | 0.000287 |
N | 300 | H300L | cAt | cTt | 1 | 1 | AY.119 | 0.000035 |
N | 300 | H300Q | caT | caA | 1 | 1 | AY.120 | 0.000037 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.19 | 0.00114 |
N | 300 | H300L | cAT | cTG | 1 | 1 | AY.20 | 0.000039 |
N | 300 | H300del | CAT | --- | 1 | 1 | AY.20 | 0.000039 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.20 | 0.000039 |
N | 300 | H300F | CAt | TTt | 1 | 1 | AY.23 | 0.00007 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.23.1 | 0.000417 |
N | 300 | H300del | CAT | --- | 1 | 1 | AY.25 | 0.000006 |
N | 300 | H300P | cAt | cCt | 1 | 1 | AY.25 | 0.000006 |
N | 300 | H300N | Cat | Aat | 1 | 1 | AY.25 | 0.000006 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.25 | 0.000006 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.27 | 0.000065 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.29 | 0.000016 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.29.1 | 0.000221 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.30 | 0.000396 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.36 | 0.000148 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.36 | 0.000148 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.37 | 0.000316 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.38 | 0.000499 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.39 | 0.000025 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.39.1 | 0.00004 |
N | 300 | H300L | cAt | cTt | 1 | 1 | AY.39.1 | 0.00004 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.39.1.1 | 0.000725 |
N | 300 | H300del | CAT | --- | 1 | 1 | AY.4 | 0.000002 |
N | 300 | H300P | cAt | cCt | 1 | 1 | AY.4 | 0.000002 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 300 | H300L | cAt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.42 | 0.00004 |
N | 300 | H300Q | caT | caG | 1 | 1 | AY.42 | 0.00004 |
N | 300 | H300Q | caT | caG | 1 | 1 | AY.43 | 0.000004 |
N | 300 | H300C | CAt | TGt | 1 | 1 | AY.43 | 0.000004 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.45 | 0.000122 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.45 | 0.000122 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.46.4 | 0.000165 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.46.5 | 0.000198 |
N | 300 | H300Q | caT | caG | 1 | 1 | AY.46.6 | 0.000072 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.5.4 | 0.000277 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.52 | 0.000814 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.63 | 0.000387 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.64 | 0.000595 |
N | 300 | H300del | CAT | --- | 1 | 1 | AY.67 | 0.000464 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.67 | 0.000464 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.68 | 0.000274 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.69 | 0.000187 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.73 | 0.000665 |
N | 300 | H300del | CAT | --- | 1 | 1 | AY.75 | 0.000056 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.75 | 0.000056 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.8 | 0.000606 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.85 | 0.000427 |
N | 300 | H300Q | caT | caA | 1 | 1 | AY.87 | 0.000833 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.9 | 0.000068 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.9.1 | 0.000084 |
N | 300 | H300del2 | CAt | --t | 1 | 1 | AY.9.1 | 0.000084 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.9.2 | 0.000037 |
N | 300 | H300R | cAt | cGt | 1 | 1 | AY.91 | 0.00073 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | AY.96 | 0.002075 |
N | 300 | H300H | caT | caC | 1 | 1 | AY.98 | 0.000079 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1 | 0.000009 |
N | 300 | H300D | Cat | Gat | 1 | 1 | B.1.1 | 0.000018 |
N | 300 | H300Q | caT | caG | 1 | 1 | B.1.1 | 0.000018 |
N | 300 | H300del | CAT | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.1 | 0.000018 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.1 | 0.000327 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.10 | 0.001115 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.128 | 0.007092 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.135 | 0.004695 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.157 | 0.000913 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.1.170 | 0.001247 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.1.216 | 0.00089 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.220 | 0.001859 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.221 | 0.010101 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.263 | 0.001558 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.269 | 0.001353 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.1.27 | 0.00565 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.1.274 | 0.005051 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.294 | 0.001266 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.306 | 0.000438 |
N | 300 | H300N | Cat | Aat | 1 | 1 | B.1.1.306 | 0.000438 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.1.311 | 0.000358 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.316 | 0.000925 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.1.317 | 0.000412 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.326 | 0.001761 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.1.334 | 0.016393 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.348 | 0.000796 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.349 | 0.010309 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.372 | 0.000689 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.378 | 0.007299 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.1.39 | 0.00051 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.486 | 0.001577 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.1.50 | 0.000679 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.50 | 0.000679 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.500 | 0.02 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.523 | 0.001563 |
N | 300 | H300P | cAt | cCt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.1.70 | 0.000341 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.103 | 0.019231 |
N | 300 | H300Q | caT | caA | 1 | 1 | B.1.118 | 0.006711 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.139 | 0.000733 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.139 | 0.000733 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.160.8 | 0.001289 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.177 | 0.000013 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.177.11 | 0.001698 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.177.15 | 0.000631 |
N | 300 | H300R | cAt | cGt | 1 | 1 | B.1.177.20 | 0.001517 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.177.38 | 0.010417 |
N | 300 | H300P | cAt | cCt | 1 | 1 | B.1.177.44 | 0.000519 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.177.45 | 0.000381 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.177.46 | 0.000918 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.177.48 | 0.003125 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.177.57 | 0.000281 |
N | 300 | H300N | Cat | Aat | 1 | 1 | B.1.177.6 | 0.000977 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.177.60 | 0.000218 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.177.62 | 0.001192 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.177.62 | 0.001192 |
N | 300 | H300G | CAt | GGt | 1 | 1 | B.1.177.63 | 0.002703 |
N | 300 | H300del | CAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.177.87 | 0.000728 |
N | 300 | H300del2 | cAT | c-- | 1 | 1 | B.1.2 | 0.000009 |
N | 300 | H300D | Cat | Gat | 1 | 1 | B.1.221.1 | 0.002907 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.221.3 | 0.000833 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.222 | 0.001692 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.238 | 0.014925 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.258 | 0.000067 |
N | 300 | H300R | cAt | cGt | 1 | 1 | B.1.258 | 0.000067 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.311 | 0.000275 |
N | 300 | H300Q | caT | caG | 1 | 1 | B.1.351 | 0.00003 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.351 | 0.00003 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.351 | 0.00003 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.351.2 | 0.000303 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.351.2 | 0.000303 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.351.5 | 0.0006 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.36.16 | 0.001425 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.36.17 | 0.000494 |
N | 300 | H300Q | caT | caG | 1 | 1 | B.1.36.17 | 0.000494 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.36.18 | 0.00042 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.36.20 | 0.016949 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.36.8 | 0.001 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.367 | 0.000792 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.397 | 0.004854 |
N | 300 | H300R | cAt | cGt | 1 | 1 | B.1.399 | 0.001934 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.409 | 0.000781 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.422 | 0.000812 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.422 | 0.000812 |
N | 300 | H300Q | caT | caG | 1 | 1 | B.1.427 | 0.00005 |
N | 300 | H300D | Cat | Gat | 1 | 1 | B.1.427 | 0.00005 |
N | 300 | H300Q | caT | caG | 1 | 1 | B.1.429 | 0.000024 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.429 | 0.000024 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.438.1 | 0.000107 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.456 | 0.003268 |
N | 300 | H300Q | caT | caG | 1 | 1 | B.1.462 | 0.007246 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.466 | 0.023256 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.470 | 0.001404 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.473 | 0.019231 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.485 | 0.014925 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.497 | 0.000315 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.505 | 0.004386 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.525 | 0.000113 |
N | 300 | H300R | cAt | cGt | 1 | 1 | B.1.525 | 0.000113 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.526 | 0.000024 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.527 | 0.003704 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.538 | 0.008065 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.549 | 0.007194 |
N | 300 | H300del | CAT | --- | 1 | 1 | B.1.560 | 0.00463 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.568 | 0.001111 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.582 | 0.000491 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.582 | 0.000491 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.587 | 0.001898 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.588 | 0.00091 |
N | 300 | H300N | Cat | Aat | 1 | 1 | B.1.595 | 0.000261 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.604 | 0.017241 |
N | 300 | H300R | cAt | cGt | 1 | 1 | B.1.609 | 0.000479 |
N | 300 | H300R | cAt | cGt | 1 | 1 | B.1.617.1 | 0.000129 |
N | 300 | H300del | CAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 300 | H300L | cAt | cTt | 1 | 1 | B.1.617.2 | 0.000004 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.619.1 | 0.000641 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.621 | 0.000089 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.623 | 0.000536 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.625 | 0.002353 |
N | 300 | H300del | CAT | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.1.636 | 0.006711 |
N | 300 | H300H | caT | caC | 1 | 1 | B.1.91 | 0.002075 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.11 | 0.005128 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.40 | 0.000364 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.52 | 0.010101 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.55 | 0.00295 |
N | 300 | H300H | caT | caC | 1 | 1 | B.58 | 0.010204 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | B.6 | 0.00091 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | C.11 | 0.010638 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | C.36.3 | 0.000567 |
N | 300 | H300H | caT | caC | 1 | 1 | C.36.3 | 0.000567 |
N | 300 | H300Q | caT | caG | 1 | 1 | C.37 | 0.000116 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | C.37.1 | 0.002618 |
N | 300 | H300L | cAt | cTt | 1 | 1 | P.1 | 0.000016 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | P.1.1 | 0.000318 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | P.1.10 | 0.000269 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | P.1.12 | 0.000484 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | P.1.8 | 0.004785 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | Q.3 | 0.000145 |
N | 300 | H300L | cAt | cTt | 1 | 1 | Q.4 | 0.000455 |
N | 300 | H300H | caT | caC | 1 | 1 | U.3 | 0.003861 |
N | 300 | H300Y | Cat | Tat | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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