CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 30

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N30G30RnonsynGgaAga396532810.82749128361-28363
N30G30RnonsynGgaCga39656840.17250928361-28363
N30G30AnonsyngGagCa653653128361-28363
N30G30GsynggAggC3581710.47765428361-28363
N30G30GsynggAggG3581300.36312828361-28363
N30G30GsynggAggT358570.15921828361-28363
N30G30VnonsyngGagTa3503460.98857128361-28363
N30G30VnonsyngGAgTG35030.0085714328361-28363
N30G30VnonsyngGAgTC35010.0028571428361-28363
N30G30EnonsyngGagAa316316128361-28363
N30G30deldelGGA---3232128361-28363
N30G30XnonsynGgaTga1111128361-28363
N30G30SnonsynGGaTCa1010128361-28363
N30G30del1delGga-ga420.528361-28363
N30G30del1delggAgg-420.528361-28363
N30G30KnonsynGGaAAa11128361-28363
N30G30QnonsynGGaCAa11128361-28363
N30G30CnonsynGgATgT11128361-28363
N30G30del2delgGAg--11128361-28363

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N30G30RGgaAga32813965All0.000628
N30G30RGgaCga6843965All0.000131
N30G30RGgaAga22762276B.1.1.1761
N30G30AgGagCa653653All0.000125
N30G30RGgaCga310491B.1.20.00273
N30G30RGgaAga181491B.1.20.001594
N30G30RGgaAga400400B.1.177.810.075729
N30G30GggAggC171358All0.000033
N30G30GggAggG130358All0.000025
N30G30GggAggT57358All0.000011
N30G30VgGagTa346350All0.000066
N30G30VgGAgTG3350All0.000001
N30G30VgGAgTC1350All0
N30G30EgGagAa316316All0.00006
N30G30AgGagCa136136AY.290.002145
N30G30RGgaCga126129B.1.3510.003746
N30G30RGgaAga3129B.1.3510.000089
N30G30EgGagAa115115B.1.617.10.014831
N30G30AgGagCa106106AY.30.001054
N30G30EgGagAa8888B.1.1.70.000079
N30G30GggAggC7576AY.260.002123
N30G30GggAggG176AY.260.000028
N30G30AgGagCa6868B.1.3550.755556
N30G30RGgaCga4261B.1.617.20.000158
N30G30RGgaAga1961B.1.617.20.000072
N30G30RGgaAga4751B.10.00043
N30G30RGgaCga451B.10.000037
N30G30GggAggC4447AY.430.000195
N30G30GggAggG347AY.430.000013
N30G30VgGagTa4747B.1.1770.000619
N30G30AgGagCa4545AY.430.000199
N30G30VgGagTa4545B.1.1.70.00004
N30G30VgGagTa3939B.1.20.000343
N30G30RGgaAga2937B.1.10.000526
N30G30RGgaCga837B.1.10.000145
N30G30AgGagCa3535AY.39.10.001386
N30G30GggAggT3334AY.1030.000205
N30G30GggAggG134AY.1030.000006
N30G30RGgaAga3333B.1.466.20.012911
N30G30delGGA---3232All0.000006
N30G30RGgaCga3232AY.1190.00113
N30G30AgGagCa3131AY.610.003248
N30G30EgGagAa2929AY.40.000045
N30G30GggAggG2029B.1.1.70.000018
N30G30GggAggC729B.1.1.70.000006
N30G30GggAggT229B.1.1.70.000002
N30G30VgGagTa2626AY.430.000115
N30G30AgGagCa2626AY.440.000158
N30G30RGgaAga2125AY.40.000033
N30G30RGgaCga425AY.40.000006
N30G30RGgaAga2525B.1.1.5190.000993
N30G30AgGagCa2424AY.40.000037
N30G30GggAggG1524AY.40.000023
N30G30GggAggC824AY.40.000012
N30G30GggAggT124AY.40.000002
N30G30RGgaCga2324B.1.5960.002004
N30G30RGgaAga124B.1.5960.000087
N30G30AgGagCa2424B.1.617.20.00009
N30G30VgGagTa2323AY.40.000036
N30G30RGgaCga2323AY.4.20.000499
N30G30RGgaCga1122B.1.1.70.00001
N30G30RGgaAga1122B.1.1.70.00001
N30G30AgGagCa2121B.1.1.70.000019
N30G30RGgaAga2121B.1.3240.033708
N30G30RGgaAga1820B.1.1600.000561
N30G30RGgaCga220B.1.1600.000062
N30G30RGgaAga1320B.1.1770.000171
N30G30RGgaCga720B.1.1770.000092
N30G30VgGagTa1919B.10.000174
N30G30GggAggG917AY.440.000055
N30G30GggAggT617AY.440.000037
N30G30GggAggC217AY.440.000012
N30G30GggAggG1217B.1.617.20.000045
N30G30GggAggC517B.1.617.20.000019
N30G30RGgaAga1416AY.440.000085
N30G30RGgaCga216AY.440.000012
N30G30AgGagCa1515B.1.6210.001328
N30G30RGgaCga1214B.1.4290.000282
N30G30RGgaAga214B.1.4290.000047
N30G30RGgaCga814R.10.00072
N30G30RGgaAga614R.10.00054
N30G30GggAggC912B.10.000082
N30G30GggAggG312B.10.000027
N30G30XGgaTga1111All0.000002
N30G30AgGagCa1111AY.60.000452
N30G30VgGagTa1111AY.750.000616
N30G30SGGaTCa1010All0.000002
N30G30SGGaTCa1010B.1.4290.000235
N30G30RGgaAga89AY.1030.00005
N30G30RGgaCga19AY.1030.000006
N30G30RGgaAga99AY.1170.000761
N30G30GggAggG99B.1.10.000163
N30G30RGgaCga99B.1.1.2220.001836
N30G30EgGagAa99B.1.617.20.000034
N30G30EgGagAa88AY.270.000518
N30G30EgGagAa88AY.440.000049
N30G30RGgaAga88AY.470.000249
N30G30VgGagTa88B.1.617.20.00003
N30G30RGgaAga77AS.10.066667
N30G30AgGagCa77AY.1030.000043
N30G30RGgaAga77AY.420.000282
N30G30VgGagTa77AY.440.000043
N30G30AgGagCa77B.10.000064
N30G30RGgaAga77B.1.5260.000165
N30G30VgGagTa77B.1.5960.00061
N30G30AgGagCa66AY.1190.000212
N30G30RGgaCga66AY.50.000124
N30G30RGgaAga66B.1.1.10.00196
N30G30RGgaAga66B.1.1.2410.012422
N30G30RGgaAga66B.1.1.2840.000644
N30G30delGGA---66B.1.1.70.000005
N30G30AgGagCa66B.1.177.440.003114
N30G30VgGagTa66B.30.004983
N30G30GggAggG35AY.1190.000106
N30G30GggAggC25AY.1190.000071
N30G30RGgaCga55AY.290.000079
N30G30GggAggG55AY.39.10.000198
N30G30GggAggT55B.1.1770.000066
N30G30VgGagTa55B.1.177.90.006658
N30G30EgGagAa55B.1.20.000044
N30G30GggAggT55B.1.20.000044
N30G30RGgaCga55B.1.2210.000355
N30G30EgGagAa55B.1.2760.084746
N30G30GggAggG45B.1.4270.000202
N30G30GggAggC15B.1.4270.00005
N30G30VgGagTa55B.1.4290.000118
N30G30GggAggC55B.4.20.333333
N30G30VgGagTa44AE.80.001956
N30G30del1Gga-ga24All0
N30G30del1ggAgg-24All0
N30G30RGgaAga34AY.1000.000138
N30G30RGgaCga14AY.1000.000046
N30G30EgGagAa44AY.1030.000025
N30G30RGgaAga44AY.1080.00441
N30G30RGgaAga44AY.1200.000149
N30G30GggAggG44AY.140.000352
N30G30GggAggT34AY.230.000209
N30G30GggAggC14AY.230.00007
N30G30AgGagCa44AY.250.000024
N30G30EgGagAa44AY.260.000113
N30G30GggAggG44AY.3.10.000341
N30G30AgGagCa44AY.4.20.000087
N30G30RGgaAga24AY.430.000009
N30G30RGgaCga24AY.430.000009
N30G30VgGagTa44AY.7.10.000451
N30G30RGgaAga24AY.750.000112
N30G30RGgaCga24AY.750.000112
N30G30EgGagAa44B.1.1770.000053
N30G30VgGagTa44B.1.177.530.009569
N30G30AgGagCa44B.1.20.000035
N30G30VgGAgTG34B.1.4270.000151
N30G30RGgaAga34B.1.4270.000151
N30G30VgGagTa14B.1.4270.00005
N30G30RGgaCga14B.1.4270.00005
N30G30VgGagTa44B.1.5260.000094
N30G30AgGagCa44Q.10.000505
N30G30VgGagTa44R.10.00036
N30G30GggAggC33AY.1020.00008
N30G30AgGagCa33AY.1130.000427
N30G30VgGagTa33AY.200.000117
N30G30GggAggC23AY.200.000078
N30G30GggAggT13AY.200.000039
N30G30RGgaAga23AY.250.000012
N30G30RGgaCga13AY.250.000006
N30G30RGgaAga33AY.30.00003
N30G30EgGagAa33AY.430.000013
N30G30RGgaCga33AY.450.000365
N30G30AgGagCa33AY.46.60.000217
N30G30delGGA---33AY.50.000062
N30G30RGgaAga23AY.60.000082
N30G30RGgaCga13AY.60.000041
N30G30AgGagCa33AY.700.000626
N30G30AgGagCa33AY.75.10.000541
N30G30EgGagAa33B.1.10.000054
N30G30RGgaAga33B.1.1.2980.002586
N30G30RGgaAga33B.1.1.3090.017544
N30G30RGgaCga33B.1.1.4340.001046
N30G30VgGagTa33B.1.1.5190.000119
N30G30VgGagTa33B.1.1600.000094
N30G30VgGagTa33B.1.2210.000213
N30G30VgGagTa33B.1.3510.000089
N30G30RGgaAga33B.1.3750.002459
N30G30RGgaAga33B.1.4000.001287
N30G30RGgaAga33B.1.5610.001191
N30G30RGgaAga33C.370.000348
N30G30RGgaCga33P.20.00056
N30G30XGgaTga22A.2.20.003378
N30G30AgGagCa22AY.1000.000092
N30G30AgGagCa22AY.1140.000462
N30G30GggAggG22AY.1170.000169
N30G30VgGagTa12AY.130.000161
N30G30VgGAgTC12AY.130.000161
N30G30RGgaAga12AY.200.000039
N30G30RGgaCga12AY.200.000039
N30G30GggAggC22AY.250.000012
N30G30AgGagCa22AY.260.000057
N30G30AgGagCa22AY.29.10.000441
N30G30AgGagCa22AY.330.000134
N30G30AgGagCa22AY.390.000049
N30G30RGgaCga12AY.390.000025
N30G30RGgaAga12AY.390.000025
N30G30RGgaAga22AY.39.10.000079
N30G30VgGagTa22AY.39.10.000079
N30G30delGGA---22AY.4.40.000818
N30G30delGGA---22AY.430.000009
N30G30VgGagTa22AY.460.000208
N30G30AgGagCa22AY.46.40.000329
N30G30VgGagTa22AY.46.60.000144
N30G30VgGagTa22AY.470.000062
N30G30VgGagTa22AY.50.000041
N30G30RGgaCga22AY.610.00021
N30G30EgGagAa22AY.750.000112
N30G30RGgaAga12AY.9.10.000084
N30G30RGgaCga12AY.9.10.000084
N30G30EgGagAa22AZ.10.001735
N30G30RGgaAga22B.1.1.390.001019
N30G30RGgaAga22B.1.1.4860.003155
N30G30GggAggG22B.1.1.5190.000079
N30G30RGgaAga22B.1.1.5260.007092
N30G30XGgaTga22B.1.1.70.000002
N30G30GggAggC22B.1.1600.000062
N30G30AgGagCa22B.1.160.80.002577
N30G30AgGagCa22B.1.1770.000026
N30G30VgGagTa22B.1.177.40.000422
N30G30RGgaAga22B.1.177.860.000367
N30G30RGgaCga12B.1.2340.000132
N30G30RGgaAga12B.1.2340.000132
N30G30AgGagCa22B.1.2430.000139
N30G30RGgaCga12B.1.2430.00007
N30G30RGgaAga12B.1.2430.00007
N30G30GggAggG22B.1.2580.000133
N30G30EgGagAa22B.1.2580.000133
N30G30RGgaAga22B.1.258.170.000208
N30G30RGgaAga22B.1.2980.004228
N30G30GggAggG22B.1.3490.00143
N30G30RGgaAga22B.1.36.290.001035
N30G30VgGagTa22B.1.36.390.004435
N30G30AgGagCa22B.1.4290.000047
N30G30RGgaAga12B.1.438.10.000107
N30G30RGgaCga12B.1.438.10.000107
N30G30RGgaAga22B.1.5090.001732
N30G30RGgaAga22B.1.5890.015152
N30G30RGgaAga22B.1.6370.000146
N30G30RGgaCga22B.1.930.001867
N30G30GggAggG22C.370.000232
N30G30XGgaTga22D.20.00015
N30G30RGgaCga22D.20.00015
N30G30VgGagTa22P.10.000032
N30G30AgGagCa22P.10.000032
N30G30RGgaAga22P.1.10.000635
N30G30RGgaAga22P.1.130.001797
N30G30VgGagTa22P.1.140.000096
N30G30GggAggG22P.1.20.002312
N30G30AgGagCa11A.10.000282
N30G30RGgaCga11A.23.10.000704
N30G30AgGagCa11A.50.001923
N30G30del2gGAg--11All0
N30G30CGgATgT11All0
N30G30QGGaCAa11All0
N30G30KGGaAAa11All0
N30G30RGgaAga11AU.30.00211
N30G30GggAggC11AY.100.00053
N30G30EgGagAa11AY.1000.000046
N30G30GggAggG11AY.1000.000046
N30G30EgGagAa11AY.1010.00049
N30G30VgGagTa11AY.1020.000027
N30G30RGgaAga11AY.1020.000027
N30G30KGGaAAa11AY.1030.000006
N30G30AgGagCa11AY.1060.000335
N30G30AgGagCa11AY.1100.000113
N30G30VgGagTa11AY.1110.000183
N30G30AgGagCa11AY.1170.000085
N30G30delGGA---11AY.1180.000063
N30G30VgGagTa11AY.1180.000063
N30G30del1Gga-ga11AY.1180.000063
N30G30GggAggG11AY.1200.000037
N30G30delGGA---11AY.1200.000037
N30G30VgGagTa11AY.1200.000037
N30G30RGgaAga11AY.1210.000135
N30G30AgGagCa11AY.1210.000135
N30G30GggAggG11AY.130.000161
N30G30EgGagAa11AY.130.000161
N30G30EgGagAa11AY.16.10.00047
N30G30AgGagCa11AY.16.10.00047
N30G30delGGA---11AY.230.00007
N30G30AgGagCa11AY.230.00007
N30G30VgGagTa11AY.230.00007
N30G30EgGagAa11AY.230.00007
N30G30RGgaCga11AY.230.00007
N30G30RGgaCga11AY.240.000431
N30G30VgGagTa11AY.250.000006
N30G30RGgaAga11AY.260.000028
N30G30GggAggG11AY.290.000016
N30G30VgGagTa11AY.290.000016
N30G30EgGagAa11AY.290.000016
N30G30XGgaTga11AY.30.00001
N30G30VgGagTa11AY.30.00001
N30G30EgGagAa11AY.30.00001
N30G30EgGagAa11AY.330.000067
N30G30RGgaCga11AY.330.000067
N30G30AgGagCa11AY.340.000097
N30G30EgGagAa11AY.350.000233
N30G30GggAggG11AY.360.000148
N30G30RGgaAga11AY.370.000316
N30G30EgGagAa11AY.390.000025
N30G30VgGagTa11AY.390.000025
N30G30delGGA---11AY.40.000002
N30G30EgGagAa11AY.420.00004
N30G30delGGA---11AY.440.000006
N30G30AgGagCa11AY.450.000122
N30G30VgGagTa11AY.450.000122
N30G30XGgaTga11AY.450.000122
N30G30AgGagCa11AY.460.000104
N30G30delGGA---11AY.460.000104
N30G30AgGagCa11AY.46.20.000635
N30G30VgGagTa11AY.46.40.000165
N30G30GggAggG11AY.46.40.000165
N30G30delGGA---11AY.46.60.000072
N30G30RGgaAga11AY.480.000465
N30G30AgGagCa11AY.50.000021
N30G30delGGA---11AY.5.30.000337
N30G30GggAggG11AY.5.40.000277
N30G30AgGagCa11AY.520.000814
N30G30AgGagCa11AY.540.000095
N30G30GggAggG11AY.540.000095
N30G30GggAggG11AY.590.00053
N30G30VgGagTa11AY.60.000041
N30G30GggAggG11AY.600.000938
N30G30AgGagCa11AY.620.000436
N30G30VgGagTa11AY.700.000209
N30G30AgGagCa11AY.720.001361
N30G30RGgaAga11AY.730.000665
N30G30AgGagCa11AY.750.000056
N30G30GggAggT11AY.75.10.00018
N30G30delGGA---11AY.75.10.00018
N30G30EgGagAa11AY.770.001127
N30G30GggAggG11AY.830.001724
N30G30AgGagCa11AY.90.000068
N30G30GggAggG11AY.90.000068
N30G30VgGagTa11AY.9.10.000084
N30G30EgGagAa11AY.9.20.000037
N30G30AgGagCa11AY.9.20.000037
N30G30RGgaCga11AY.930.000273
N30G30AgGagCa11AY.960.002075
N30G30AgGagCa11AY.980.000079
N30G30QGGaCAa11AY.980.000079
N30G30VgGagTa11AY.98.10.000048
N30G30GggAggG11AY.98.10.000048
N30G30AgGagCa11AY.98.10.000048
N30G30GggAggG11AY.99.20.000092
N30G30EgGagAa11AY.99.20.000092
N30G30RGgaAga11AZ.30.00152
N30G30VgGagTa11B0.000128
N30G30delGGA---11B.10.000009
N30G30EgGagAa11B.10.000009
N30G30del1Gga-ga11B.10.000009
N30G30AgGagCa11B.1.10.000018
N30G30VgGagTa11B.1.10.000018
N30G30XGgaTga11B.1.10.000018
N30G30delGGA---11B.1.10.000018
N30G30GggAggC11B.1.1.10.000327
N30G30RGgaAga11B.1.1.100.001115
N30G30delGGA---11B.1.1.1390.022727
N30G30RGgaAga11B.1.1.1940.00495
N30G30VgGagTa11B.1.1.2140.000055
N30G30delGGA---11B.1.1.2160.00089
N30G30RGgaCga11B.1.1.2170.003636
N30G30VgGagTa11B.1.1.2220.000204
N30G30VgGagTa11B.1.1.2290.005747
N30G30RGgaAga11B.1.1.250.000569
N30G30VgGagTa11B.1.1.2840.000107
N30G30VgGagTa11B.1.1.2890.002083
N30G30RGgaCga11B.1.1.2940.001266
N30G30AgGagCa11B.1.1.2940.001266
N30G30EgGagAa11B.1.1.3020.002075
N30G30RGgaCga11B.1.1.3060.000438
N30G30EgGagAa11B.1.1.3170.000412
N30G30VgGagTa11B.1.1.3170.000412
N30G30VgGagTa11B.1.1.330.000421
N30G30GggAggG11B.1.1.3480.000796
N30G30EgGagAa11B.1.1.390.00051
N30G30VgGagTa11B.1.1.4170.002703
N30G30delGGA---11B.1.1.4200.001006
N30G30VgGagTa11B.1.1.4330.001425
N30G30VgGagTa11B.1.1.50.008333
N30G30EgGagAa11B.1.1.5190.00004
N30G30AgGagCa11B.1.1.5190.00004
N30G30EgGagAa11B.1.1600.000031
N30G30AgGagCa11B.1.160.100.008065
N30G30GggAggC11B.1.160.70.002079
N30G30EgGagAa11B.1.177.210.000076
N30G30GggAggG11B.1.177.330.001645
N30G30RGgaAga11B.1.177.570.000281
N30G30delGGA---11B.1.177.630.002703
N30G30AgGagCa11B.1.177.70.000165
N30G30RGgaAga11B.1.177.70.000165
N30G30delGGA---11B.1.177.750.001041
N30G30VgGagTa11B.1.177.770.000726
N30G30VgGagTa11B.1.177.800.001912
N30G30RGgaAga11B.1.177.800.001912
N30G30GggAggG11B.1.177.810.000189
N30G30VgGagTa11B.1.214.20.0006
N30G30VgGagTa11B.1.214.30.007143
N30G30delGGA---11B.1.2210.000071
N30G30VgGagTa11B.1.230.006061
N30G30VgGagTa11B.1.2340.000132
N30G30AgGagCa11B.1.2580.000067
N30G30RGgaAga11B.1.2790.000514
N30G30VgGagTa11B.1.2940.032258
N30G30VgGagTa11B.1.3010.005917
N30G30RGgaCga11B.1.3370.005587
N30G30EgGagAa11B.1.3400.004292
N30G30VgGagTa11B.1.351.20.000303
N30G30RGgaAga11B.1.351.30.000876
N30G30RGgaAga11B.1.360.000146
N30G30AgGagCa11B.1.360.000146
N30G30AgGagCa11B.1.3690.000285
N30G30VgGagTa11B.1.4030.003268
N30G30RGgaAga11B.1.4160.001269
N30G30VgGagTa11B.1.4260.001009
N30G30GggAggG11B.1.4290.000024
N30G30delGGA---11B.1.4390.005917
N30G30XGgaTga11B.1.4530.003236
N30G30RGgaCga11B.1.4800.002488
N30G30AgGagCa11B.1.5090.000866
N30G30GggAggG11B.1.5170.000427
N30G30RGgaAga11B.1.5240.001406
N30G30GggAggG11B.1.5250.000113
N30G30VgGagTa11B.1.5250.000113
N30G30GggAggG11B.1.5260.000024
N30G30RGgaCga11B.1.5380.008065
N30G30VgGagTa11B.1.5440.006024
N30G30RGgaCga11B.1.5870.001898
N30G30RGgaCga11B.1.5950.000261
N30G30del2gGAg--11B.1.5960.000087
N30G30AgGagCa11B.1.6040.017241
N30G30del1ggAgg-11B.1.617.20.000004
N30G30CGgATgT11B.1.617.20.000004
N30G30XGgaTga11B.1.617.20.000004
N30G30delGGA---11B.1.617.20.000004
N30G30RGgaAga11B.1.6190.000871
N30G30RGgaCga11B.1.6210.000089
N30G30VgGagTa11B.1.6230.000536
N30G30EgGagAa11B.1.6280.000352
N30G30RGgaCga11C.36.30.000567
N30G30GggAggG11D.20.000075
N30G30del1ggAgg-11D.20.000075
N30G30GggAggG11P.1.10.000318
N30G30VgGagTa11P.1.120.000484
N30G30RGgaAga11P.1.170.000162
N30G30GggAggG11P.1.70.000319
N30G30VgGagTa11P.20.000187
N30G30EgGagAa11Q.10.000126
N30G30GggAggG11Q.10.000126
N30G30EgGagAa11R.10.00009
N30G30RGgaAga11Z.10.00289