CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 30 | G30R | nonsyn | Gga | Aga | 3965 | 3281 | 0.827491 | 28361-28363 | |
N | 30 | G30R | nonsyn | Gga | Cga | 3965 | 684 | 0.172509 | 28361-28363 | |
N | 30 | G30A | nonsyn | gGa | gCa | 653 | 653 | 1 | 28361-28363 | |
N | 30 | G30G | syn | ggA | ggC | 358 | 171 | 0.477654 | 28361-28363 | |
N | 30 | G30G | syn | ggA | ggG | 358 | 130 | 0.363128 | 28361-28363 | |
N | 30 | G30G | syn | ggA | ggT | 358 | 57 | 0.159218 | 28361-28363 | |
N | 30 | G30V | nonsyn | gGa | gTa | 350 | 346 | 0.988571 | 28361-28363 | |
N | 30 | G30V | nonsyn | gGA | gTG | 350 | 3 | 0.00857143 | 28361-28363 | |
N | 30 | G30V | nonsyn | gGA | gTC | 350 | 1 | 0.00285714 | 28361-28363 | |
N | 30 | G30E | nonsyn | gGa | gAa | 316 | 316 | 1 | 28361-28363 | |
N | 30 | G30del | del | GGA | --- | 32 | 32 | 1 | 28361-28363 | |
N | 30 | G30X | nonsyn | Gga | Tga | 11 | 11 | 1 | 28361-28363 | |
N | 30 | G30S | nonsyn | GGa | TCa | 10 | 10 | 1 | 28361-28363 | |
N | 30 | G30del1 | del | Gga | -ga | 4 | 2 | 0.5 | 28361-28363 | |
N | 30 | G30del1 | del | ggA | gg- | 4 | 2 | 0.5 | 28361-28363 | |
N | 30 | G30K | nonsyn | GGa | AAa | 1 | 1 | 1 | 28361-28363 | |
N | 30 | G30Q | nonsyn | GGa | CAa | 1 | 1 | 1 | 28361-28363 | |
N | 30 | G30C | nonsyn | GgA | TgT | 1 | 1 | 1 | 28361-28363 | |
N | 30 | G30del2 | del | gGA | g-- | 1 | 1 | 1 | 28361-28363 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 30 | G30R | Gga | Aga | 3281 | 3965 | All | 0.000628 |
N | 30 | G30R | Gga | Cga | 684 | 3965 | All | 0.000131 |
N | 30 | G30R | Gga | Aga | 2276 | 2276 | B.1.1.176 | 1 |
N | 30 | G30A | gGa | gCa | 653 | 653 | All | 0.000125 |
N | 30 | G30R | Gga | Cga | 310 | 491 | B.1.2 | 0.00273 |
N | 30 | G30R | Gga | Aga | 181 | 491 | B.1.2 | 0.001594 |
N | 30 | G30R | Gga | Aga | 400 | 400 | B.1.177.81 | 0.075729 |
N | 30 | G30G | ggA | ggC | 171 | 358 | All | 0.000033 |
N | 30 | G30G | ggA | ggG | 130 | 358 | All | 0.000025 |
N | 30 | G30G | ggA | ggT | 57 | 358 | All | 0.000011 |
N | 30 | G30V | gGa | gTa | 346 | 350 | All | 0.000066 |
N | 30 | G30V | gGA | gTG | 3 | 350 | All | 0.000001 |
N | 30 | G30V | gGA | gTC | 1 | 350 | All | 0 |
N | 30 | G30E | gGa | gAa | 316 | 316 | All | 0.00006 |
N | 30 | G30A | gGa | gCa | 136 | 136 | AY.29 | 0.002145 |
N | 30 | G30R | Gga | Cga | 126 | 129 | B.1.351 | 0.003746 |
N | 30 | G30R | Gga | Aga | 3 | 129 | B.1.351 | 0.000089 |
N | 30 | G30E | gGa | gAa | 115 | 115 | B.1.617.1 | 0.014831 |
N | 30 | G30A | gGa | gCa | 106 | 106 | AY.3 | 0.001054 |
N | 30 | G30E | gGa | gAa | 88 | 88 | B.1.1.7 | 0.000079 |
N | 30 | G30G | ggA | ggC | 75 | 76 | AY.26 | 0.002123 |
N | 30 | G30G | ggA | ggG | 1 | 76 | AY.26 | 0.000028 |
N | 30 | G30A | gGa | gCa | 68 | 68 | B.1.355 | 0.755556 |
N | 30 | G30R | Gga | Cga | 42 | 61 | B.1.617.2 | 0.000158 |
N | 30 | G30R | Gga | Aga | 19 | 61 | B.1.617.2 | 0.000072 |
N | 30 | G30R | Gga | Aga | 47 | 51 | B.1 | 0.00043 |
N | 30 | G30R | Gga | Cga | 4 | 51 | B.1 | 0.000037 |
N | 30 | G30G | ggA | ggC | 44 | 47 | AY.43 | 0.000195 |
N | 30 | G30G | ggA | ggG | 3 | 47 | AY.43 | 0.000013 |
N | 30 | G30V | gGa | gTa | 47 | 47 | B.1.177 | 0.000619 |
N | 30 | G30A | gGa | gCa | 45 | 45 | AY.43 | 0.000199 |
N | 30 | G30V | gGa | gTa | 45 | 45 | B.1.1.7 | 0.00004 |
N | 30 | G30V | gGa | gTa | 39 | 39 | B.1.2 | 0.000343 |
N | 30 | G30R | Gga | Aga | 29 | 37 | B.1.1 | 0.000526 |
N | 30 | G30R | Gga | Cga | 8 | 37 | B.1.1 | 0.000145 |
N | 30 | G30A | gGa | gCa | 35 | 35 | AY.39.1 | 0.001386 |
N | 30 | G30G | ggA | ggT | 33 | 34 | AY.103 | 0.000205 |
N | 30 | G30G | ggA | ggG | 1 | 34 | AY.103 | 0.000006 |
N | 30 | G30R | Gga | Aga | 33 | 33 | B.1.466.2 | 0.012911 |
N | 30 | G30del | GGA | --- | 32 | 32 | All | 0.000006 |
N | 30 | G30R | Gga | Cga | 32 | 32 | AY.119 | 0.00113 |
N | 30 | G30A | gGa | gCa | 31 | 31 | AY.61 | 0.003248 |
N | 30 | G30E | gGa | gAa | 29 | 29 | AY.4 | 0.000045 |
N | 30 | G30G | ggA | ggG | 20 | 29 | B.1.1.7 | 0.000018 |
N | 30 | G30G | ggA | ggC | 7 | 29 | B.1.1.7 | 0.000006 |
N | 30 | G30G | ggA | ggT | 2 | 29 | B.1.1.7 | 0.000002 |
N | 30 | G30V | gGa | gTa | 26 | 26 | AY.43 | 0.000115 |
N | 30 | G30A | gGa | gCa | 26 | 26 | AY.44 | 0.000158 |
N | 30 | G30R | Gga | Aga | 21 | 25 | AY.4 | 0.000033 |
N | 30 | G30R | Gga | Cga | 4 | 25 | AY.4 | 0.000006 |
N | 30 | G30R | Gga | Aga | 25 | 25 | B.1.1.519 | 0.000993 |
N | 30 | G30A | gGa | gCa | 24 | 24 | AY.4 | 0.000037 |
N | 30 | G30G | ggA | ggG | 15 | 24 | AY.4 | 0.000023 |
N | 30 | G30G | ggA | ggC | 8 | 24 | AY.4 | 0.000012 |
N | 30 | G30G | ggA | ggT | 1 | 24 | AY.4 | 0.000002 |
N | 30 | G30R | Gga | Cga | 23 | 24 | B.1.596 | 0.002004 |
N | 30 | G30R | Gga | Aga | 1 | 24 | B.1.596 | 0.000087 |
N | 30 | G30A | gGa | gCa | 24 | 24 | B.1.617.2 | 0.00009 |
N | 30 | G30V | gGa | gTa | 23 | 23 | AY.4 | 0.000036 |
N | 30 | G30R | Gga | Cga | 23 | 23 | AY.4.2 | 0.000499 |
N | 30 | G30R | Gga | Cga | 11 | 22 | B.1.1.7 | 0.00001 |
N | 30 | G30R | Gga | Aga | 11 | 22 | B.1.1.7 | 0.00001 |
N | 30 | G30A | gGa | gCa | 21 | 21 | B.1.1.7 | 0.000019 |
N | 30 | G30R | Gga | Aga | 21 | 21 | B.1.324 | 0.033708 |
N | 30 | G30R | Gga | Aga | 18 | 20 | B.1.160 | 0.000561 |
N | 30 | G30R | Gga | Cga | 2 | 20 | B.1.160 | 0.000062 |
N | 30 | G30R | Gga | Aga | 13 | 20 | B.1.177 | 0.000171 |
N | 30 | G30R | Gga | Cga | 7 | 20 | B.1.177 | 0.000092 |
N | 30 | G30V | gGa | gTa | 19 | 19 | B.1 | 0.000174 |
N | 30 | G30G | ggA | ggG | 9 | 17 | AY.44 | 0.000055 |
N | 30 | G30G | ggA | ggT | 6 | 17 | AY.44 | 0.000037 |
N | 30 | G30G | ggA | ggC | 2 | 17 | AY.44 | 0.000012 |
N | 30 | G30G | ggA | ggG | 12 | 17 | B.1.617.2 | 0.000045 |
N | 30 | G30G | ggA | ggC | 5 | 17 | B.1.617.2 | 0.000019 |
N | 30 | G30R | Gga | Aga | 14 | 16 | AY.44 | 0.000085 |
N | 30 | G30R | Gga | Cga | 2 | 16 | AY.44 | 0.000012 |
N | 30 | G30A | gGa | gCa | 15 | 15 | B.1.621 | 0.001328 |
N | 30 | G30R | Gga | Cga | 12 | 14 | B.1.429 | 0.000282 |
N | 30 | G30R | Gga | Aga | 2 | 14 | B.1.429 | 0.000047 |
N | 30 | G30R | Gga | Cga | 8 | 14 | R.1 | 0.00072 |
N | 30 | G30R | Gga | Aga | 6 | 14 | R.1 | 0.00054 |
N | 30 | G30G | ggA | ggC | 9 | 12 | B.1 | 0.000082 |
N | 30 | G30G | ggA | ggG | 3 | 12 | B.1 | 0.000027 |
N | 30 | G30X | Gga | Tga | 11 | 11 | All | 0.000002 |
N | 30 | G30A | gGa | gCa | 11 | 11 | AY.6 | 0.000452 |
N | 30 | G30V | gGa | gTa | 11 | 11 | AY.75 | 0.000616 |
N | 30 | G30S | GGa | TCa | 10 | 10 | All | 0.000002 |
N | 30 | G30S | GGa | TCa | 10 | 10 | B.1.429 | 0.000235 |
N | 30 | G30R | Gga | Aga | 8 | 9 | AY.103 | 0.00005 |
N | 30 | G30R | Gga | Cga | 1 | 9 | AY.103 | 0.000006 |
N | 30 | G30R | Gga | Aga | 9 | 9 | AY.117 | 0.000761 |
N | 30 | G30G | ggA | ggG | 9 | 9 | B.1.1 | 0.000163 |
N | 30 | G30R | Gga | Cga | 9 | 9 | B.1.1.222 | 0.001836 |
N | 30 | G30E | gGa | gAa | 9 | 9 | B.1.617.2 | 0.000034 |
N | 30 | G30E | gGa | gAa | 8 | 8 | AY.27 | 0.000518 |
N | 30 | G30E | gGa | gAa | 8 | 8 | AY.44 | 0.000049 |
N | 30 | G30R | Gga | Aga | 8 | 8 | AY.47 | 0.000249 |
N | 30 | G30V | gGa | gTa | 8 | 8 | B.1.617.2 | 0.00003 |
N | 30 | G30R | Gga | Aga | 7 | 7 | AS.1 | 0.066667 |
N | 30 | G30A | gGa | gCa | 7 | 7 | AY.103 | 0.000043 |
N | 30 | G30R | Gga | Aga | 7 | 7 | AY.42 | 0.000282 |
N | 30 | G30V | gGa | gTa | 7 | 7 | AY.44 | 0.000043 |
N | 30 | G30A | gGa | gCa | 7 | 7 | B.1 | 0.000064 |
N | 30 | G30R | Gga | Aga | 7 | 7 | B.1.526 | 0.000165 |
N | 30 | G30V | gGa | gTa | 7 | 7 | B.1.596 | 0.00061 |
N | 30 | G30A | gGa | gCa | 6 | 6 | AY.119 | 0.000212 |
N | 30 | G30R | Gga | Cga | 6 | 6 | AY.5 | 0.000124 |
N | 30 | G30R | Gga | Aga | 6 | 6 | B.1.1.1 | 0.00196 |
N | 30 | G30R | Gga | Aga | 6 | 6 | B.1.1.241 | 0.012422 |
N | 30 | G30R | Gga | Aga | 6 | 6 | B.1.1.284 | 0.000644 |
N | 30 | G30del | GGA | --- | 6 | 6 | B.1.1.7 | 0.000005 |
N | 30 | G30A | gGa | gCa | 6 | 6 | B.1.177.44 | 0.003114 |
N | 30 | G30V | gGa | gTa | 6 | 6 | B.3 | 0.004983 |
N | 30 | G30G | ggA | ggG | 3 | 5 | AY.119 | 0.000106 |
N | 30 | G30G | ggA | ggC | 2 | 5 | AY.119 | 0.000071 |
N | 30 | G30R | Gga | Cga | 5 | 5 | AY.29 | 0.000079 |
N | 30 | G30G | ggA | ggG | 5 | 5 | AY.39.1 | 0.000198 |
N | 30 | G30G | ggA | ggT | 5 | 5 | B.1.177 | 0.000066 |
N | 30 | G30V | gGa | gTa | 5 | 5 | B.1.177.9 | 0.006658 |
N | 30 | G30E | gGa | gAa | 5 | 5 | B.1.2 | 0.000044 |
N | 30 | G30G | ggA | ggT | 5 | 5 | B.1.2 | 0.000044 |
N | 30 | G30R | Gga | Cga | 5 | 5 | B.1.221 | 0.000355 |
N | 30 | G30E | gGa | gAa | 5 | 5 | B.1.276 | 0.084746 |
N | 30 | G30G | ggA | ggG | 4 | 5 | B.1.427 | 0.000202 |
N | 30 | G30G | ggA | ggC | 1 | 5 | B.1.427 | 0.00005 |
N | 30 | G30V | gGa | gTa | 5 | 5 | B.1.429 | 0.000118 |
N | 30 | G30G | ggA | ggC | 5 | 5 | B.4.2 | 0.333333 |
N | 30 | G30V | gGa | gTa | 4 | 4 | AE.8 | 0.001956 |
N | 30 | G30del1 | Gga | -ga | 2 | 4 | All | 0 |
N | 30 | G30del1 | ggA | gg- | 2 | 4 | All | 0 |
N | 30 | G30R | Gga | Aga | 3 | 4 | AY.100 | 0.000138 |
N | 30 | G30R | Gga | Cga | 1 | 4 | AY.100 | 0.000046 |
N | 30 | G30E | gGa | gAa | 4 | 4 | AY.103 | 0.000025 |
N | 30 | G30R | Gga | Aga | 4 | 4 | AY.108 | 0.00441 |
N | 30 | G30R | Gga | Aga | 4 | 4 | AY.120 | 0.000149 |
N | 30 | G30G | ggA | ggG | 4 | 4 | AY.14 | 0.000352 |
N | 30 | G30G | ggA | ggT | 3 | 4 | AY.23 | 0.000209 |
N | 30 | G30G | ggA | ggC | 1 | 4 | AY.23 | 0.00007 |
N | 30 | G30A | gGa | gCa | 4 | 4 | AY.25 | 0.000024 |
N | 30 | G30E | gGa | gAa | 4 | 4 | AY.26 | 0.000113 |
N | 30 | G30G | ggA | ggG | 4 | 4 | AY.3.1 | 0.000341 |
N | 30 | G30A | gGa | gCa | 4 | 4 | AY.4.2 | 0.000087 |
N | 30 | G30R | Gga | Aga | 2 | 4 | AY.43 | 0.000009 |
N | 30 | G30R | Gga | Cga | 2 | 4 | AY.43 | 0.000009 |
N | 30 | G30V | gGa | gTa | 4 | 4 | AY.7.1 | 0.000451 |
N | 30 | G30R | Gga | Aga | 2 | 4 | AY.75 | 0.000112 |
N | 30 | G30R | Gga | Cga | 2 | 4 | AY.75 | 0.000112 |
N | 30 | G30E | gGa | gAa | 4 | 4 | B.1.177 | 0.000053 |
N | 30 | G30V | gGa | gTa | 4 | 4 | B.1.177.53 | 0.009569 |
N | 30 | G30A | gGa | gCa | 4 | 4 | B.1.2 | 0.000035 |
N | 30 | G30V | gGA | gTG | 3 | 4 | B.1.427 | 0.000151 |
N | 30 | G30R | Gga | Aga | 3 | 4 | B.1.427 | 0.000151 |
N | 30 | G30V | gGa | gTa | 1 | 4 | B.1.427 | 0.00005 |
N | 30 | G30R | Gga | Cga | 1 | 4 | B.1.427 | 0.00005 |
N | 30 | G30V | gGa | gTa | 4 | 4 | B.1.526 | 0.000094 |
N | 30 | G30A | gGa | gCa | 4 | 4 | Q.1 | 0.000505 |
N | 30 | G30V | gGa | gTa | 4 | 4 | R.1 | 0.00036 |
N | 30 | G30G | ggA | ggC | 3 | 3 | AY.102 | 0.00008 |
N | 30 | G30A | gGa | gCa | 3 | 3 | AY.113 | 0.000427 |
N | 30 | G30V | gGa | gTa | 3 | 3 | AY.20 | 0.000117 |
N | 30 | G30G | ggA | ggC | 2 | 3 | AY.20 | 0.000078 |
N | 30 | G30G | ggA | ggT | 1 | 3 | AY.20 | 0.000039 |
N | 30 | G30R | Gga | Aga | 2 | 3 | AY.25 | 0.000012 |
N | 30 | G30R | Gga | Cga | 1 | 3 | AY.25 | 0.000006 |
N | 30 | G30R | Gga | Aga | 3 | 3 | AY.3 | 0.00003 |
N | 30 | G30E | gGa | gAa | 3 | 3 | AY.43 | 0.000013 |
N | 30 | G30R | Gga | Cga | 3 | 3 | AY.45 | 0.000365 |
N | 30 | G30A | gGa | gCa | 3 | 3 | AY.46.6 | 0.000217 |
N | 30 | G30del | GGA | --- | 3 | 3 | AY.5 | 0.000062 |
N | 30 | G30R | Gga | Aga | 2 | 3 | AY.6 | 0.000082 |
N | 30 | G30R | Gga | Cga | 1 | 3 | AY.6 | 0.000041 |
N | 30 | G30A | gGa | gCa | 3 | 3 | AY.70 | 0.000626 |
N | 30 | G30A | gGa | gCa | 3 | 3 | AY.75.1 | 0.000541 |
N | 30 | G30E | gGa | gAa | 3 | 3 | B.1.1 | 0.000054 |
N | 30 | G30R | Gga | Aga | 3 | 3 | B.1.1.298 | 0.002586 |
N | 30 | G30R | Gga | Aga | 3 | 3 | B.1.1.309 | 0.017544 |
N | 30 | G30R | Gga | Cga | 3 | 3 | B.1.1.434 | 0.001046 |
N | 30 | G30V | gGa | gTa | 3 | 3 | B.1.1.519 | 0.000119 |
N | 30 | G30V | gGa | gTa | 3 | 3 | B.1.160 | 0.000094 |
N | 30 | G30V | gGa | gTa | 3 | 3 | B.1.221 | 0.000213 |
N | 30 | G30V | gGa | gTa | 3 | 3 | B.1.351 | 0.000089 |
N | 30 | G30R | Gga | Aga | 3 | 3 | B.1.375 | 0.002459 |
N | 30 | G30R | Gga | Aga | 3 | 3 | B.1.400 | 0.001287 |
N | 30 | G30R | Gga | Aga | 3 | 3 | B.1.561 | 0.001191 |
N | 30 | G30R | Gga | Aga | 3 | 3 | C.37 | 0.000348 |
N | 30 | G30R | Gga | Cga | 3 | 3 | P.2 | 0.00056 |
N | 30 | G30X | Gga | Tga | 2 | 2 | A.2.2 | 0.003378 |
N | 30 | G30A | gGa | gCa | 2 | 2 | AY.100 | 0.000092 |
N | 30 | G30A | gGa | gCa | 2 | 2 | AY.114 | 0.000462 |
N | 30 | G30G | ggA | ggG | 2 | 2 | AY.117 | 0.000169 |
N | 30 | G30V | gGa | gTa | 1 | 2 | AY.13 | 0.000161 |
N | 30 | G30V | gGA | gTC | 1 | 2 | AY.13 | 0.000161 |
N | 30 | G30R | Gga | Aga | 1 | 2 | AY.20 | 0.000039 |
N | 30 | G30R | Gga | Cga | 1 | 2 | AY.20 | 0.000039 |
N | 30 | G30G | ggA | ggC | 2 | 2 | AY.25 | 0.000012 |
N | 30 | G30A | gGa | gCa | 2 | 2 | AY.26 | 0.000057 |
N | 30 | G30A | gGa | gCa | 2 | 2 | AY.29.1 | 0.000441 |
N | 30 | G30A | gGa | gCa | 2 | 2 | AY.33 | 0.000134 |
N | 30 | G30A | gGa | gCa | 2 | 2 | AY.39 | 0.000049 |
N | 30 | G30R | Gga | Cga | 1 | 2 | AY.39 | 0.000025 |
N | 30 | G30R | Gga | Aga | 1 | 2 | AY.39 | 0.000025 |
N | 30 | G30R | Gga | Aga | 2 | 2 | AY.39.1 | 0.000079 |
N | 30 | G30V | gGa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
N | 30 | G30del | GGA | --- | 2 | 2 | AY.4.4 | 0.000818 |
N | 30 | G30del | GGA | --- | 2 | 2 | AY.43 | 0.000009 |
N | 30 | G30V | gGa | gTa | 2 | 2 | AY.46 | 0.000208 |
N | 30 | G30A | gGa | gCa | 2 | 2 | AY.46.4 | 0.000329 |
N | 30 | G30V | gGa | gTa | 2 | 2 | AY.46.6 | 0.000144 |
N | 30 | G30V | gGa | gTa | 2 | 2 | AY.47 | 0.000062 |
N | 30 | G30V | gGa | gTa | 2 | 2 | AY.5 | 0.000041 |
N | 30 | G30R | Gga | Cga | 2 | 2 | AY.61 | 0.00021 |
N | 30 | G30E | gGa | gAa | 2 | 2 | AY.75 | 0.000112 |
N | 30 | G30R | Gga | Aga | 1 | 2 | AY.9.1 | 0.000084 |
N | 30 | G30R | Gga | Cga | 1 | 2 | AY.9.1 | 0.000084 |
N | 30 | G30E | gGa | gAa | 2 | 2 | AZ.1 | 0.001735 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.1.39 | 0.001019 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.1.486 | 0.003155 |
N | 30 | G30G | ggA | ggG | 2 | 2 | B.1.1.519 | 0.000079 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.1.526 | 0.007092 |
N | 30 | G30X | Gga | Tga | 2 | 2 | B.1.1.7 | 0.000002 |
N | 30 | G30G | ggA | ggC | 2 | 2 | B.1.160 | 0.000062 |
N | 30 | G30A | gGa | gCa | 2 | 2 | B.1.160.8 | 0.002577 |
N | 30 | G30A | gGa | gCa | 2 | 2 | B.1.177 | 0.000026 |
N | 30 | G30V | gGa | gTa | 2 | 2 | B.1.177.4 | 0.000422 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.177.86 | 0.000367 |
N | 30 | G30R | Gga | Cga | 1 | 2 | B.1.234 | 0.000132 |
N | 30 | G30R | Gga | Aga | 1 | 2 | B.1.234 | 0.000132 |
N | 30 | G30A | gGa | gCa | 2 | 2 | B.1.243 | 0.000139 |
N | 30 | G30R | Gga | Cga | 1 | 2 | B.1.243 | 0.00007 |
N | 30 | G30R | Gga | Aga | 1 | 2 | B.1.243 | 0.00007 |
N | 30 | G30G | ggA | ggG | 2 | 2 | B.1.258 | 0.000133 |
N | 30 | G30E | gGa | gAa | 2 | 2 | B.1.258 | 0.000133 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.258.17 | 0.000208 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.298 | 0.004228 |
N | 30 | G30G | ggA | ggG | 2 | 2 | B.1.349 | 0.00143 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.36.29 | 0.001035 |
N | 30 | G30V | gGa | gTa | 2 | 2 | B.1.36.39 | 0.004435 |
N | 30 | G30A | gGa | gCa | 2 | 2 | B.1.429 | 0.000047 |
N | 30 | G30R | Gga | Aga | 1 | 2 | B.1.438.1 | 0.000107 |
N | 30 | G30R | Gga | Cga | 1 | 2 | B.1.438.1 | 0.000107 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.509 | 0.001732 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.589 | 0.015152 |
N | 30 | G30R | Gga | Aga | 2 | 2 | B.1.637 | 0.000146 |
N | 30 | G30R | Gga | Cga | 2 | 2 | B.1.93 | 0.001867 |
N | 30 | G30G | ggA | ggG | 2 | 2 | C.37 | 0.000232 |
N | 30 | G30X | Gga | Tga | 2 | 2 | D.2 | 0.00015 |
N | 30 | G30R | Gga | Cga | 2 | 2 | D.2 | 0.00015 |
N | 30 | G30V | gGa | gTa | 2 | 2 | P.1 | 0.000032 |
N | 30 | G30A | gGa | gCa | 2 | 2 | P.1 | 0.000032 |
N | 30 | G30R | Gga | Aga | 2 | 2 | P.1.1 | 0.000635 |
N | 30 | G30R | Gga | Aga | 2 | 2 | P.1.13 | 0.001797 |
N | 30 | G30V | gGa | gTa | 2 | 2 | P.1.14 | 0.000096 |
N | 30 | G30G | ggA | ggG | 2 | 2 | P.1.2 | 0.002312 |
N | 30 | G30A | gGa | gCa | 1 | 1 | A.1 | 0.000282 |
N | 30 | G30R | Gga | Cga | 1 | 1 | A.23.1 | 0.000704 |
N | 30 | G30A | gGa | gCa | 1 | 1 | A.5 | 0.001923 |
N | 30 | G30del2 | gGA | g-- | 1 | 1 | All | 0 |
N | 30 | G30C | GgA | TgT | 1 | 1 | All | 0 |
N | 30 | G30Q | GGa | CAa | 1 | 1 | All | 0 |
N | 30 | G30K | GGa | AAa | 1 | 1 | All | 0 |
N | 30 | G30R | Gga | Aga | 1 | 1 | AU.3 | 0.00211 |
N | 30 | G30G | ggA | ggC | 1 | 1 | AY.10 | 0.00053 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.100 | 0.000046 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.100 | 0.000046 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.101 | 0.00049 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.102 | 0.000027 |
N | 30 | G30R | Gga | Aga | 1 | 1 | AY.102 | 0.000027 |
N | 30 | G30K | GGa | AAa | 1 | 1 | AY.103 | 0.000006 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.106 | 0.000335 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.110 | 0.000113 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.111 | 0.000183 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.117 | 0.000085 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.118 | 0.000063 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.118 | 0.000063 |
N | 30 | G30del1 | Gga | -ga | 1 | 1 | AY.118 | 0.000063 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.120 | 0.000037 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.120 | 0.000037 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.120 | 0.000037 |
N | 30 | G30R | Gga | Aga | 1 | 1 | AY.121 | 0.000135 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.121 | 0.000135 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.13 | 0.000161 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.13 | 0.000161 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.16.1 | 0.00047 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.16.1 | 0.00047 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.23 | 0.00007 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.23 | 0.00007 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.23 | 0.00007 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.23 | 0.00007 |
N | 30 | G30R | Gga | Cga | 1 | 1 | AY.23 | 0.00007 |
N | 30 | G30R | Gga | Cga | 1 | 1 | AY.24 | 0.000431 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.25 | 0.000006 |
N | 30 | G30R | Gga | Aga | 1 | 1 | AY.26 | 0.000028 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.29 | 0.000016 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.29 | 0.000016 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.29 | 0.000016 |
N | 30 | G30X | Gga | Tga | 1 | 1 | AY.3 | 0.00001 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.3 | 0.00001 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.3 | 0.00001 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.33 | 0.000067 |
N | 30 | G30R | Gga | Cga | 1 | 1 | AY.33 | 0.000067 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.34 | 0.000097 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.35 | 0.000233 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.36 | 0.000148 |
N | 30 | G30R | Gga | Aga | 1 | 1 | AY.37 | 0.000316 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.39 | 0.000025 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.39 | 0.000025 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.4 | 0.000002 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.42 | 0.00004 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.44 | 0.000006 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.45 | 0.000122 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.45 | 0.000122 |
N | 30 | G30X | Gga | Tga | 1 | 1 | AY.45 | 0.000122 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.46 | 0.000104 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.46 | 0.000104 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.46.2 | 0.000635 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.46.4 | 0.000165 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.46.4 | 0.000165 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.46.6 | 0.000072 |
N | 30 | G30R | Gga | Aga | 1 | 1 | AY.48 | 0.000465 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.5 | 0.000021 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.5.3 | 0.000337 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.5.4 | 0.000277 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.52 | 0.000814 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.54 | 0.000095 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.54 | 0.000095 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.59 | 0.00053 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.6 | 0.000041 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.60 | 0.000938 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.62 | 0.000436 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.70 | 0.000209 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.72 | 0.001361 |
N | 30 | G30R | Gga | Aga | 1 | 1 | AY.73 | 0.000665 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.75 | 0.000056 |
N | 30 | G30G | ggA | ggT | 1 | 1 | AY.75.1 | 0.00018 |
N | 30 | G30del | GGA | --- | 1 | 1 | AY.75.1 | 0.00018 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.77 | 0.001127 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.83 | 0.001724 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.9 | 0.000068 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.9 | 0.000068 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.9.1 | 0.000084 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.9.2 | 0.000037 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.9.2 | 0.000037 |
N | 30 | G30R | Gga | Cga | 1 | 1 | AY.93 | 0.000273 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.96 | 0.002075 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.98 | 0.000079 |
N | 30 | G30Q | GGa | CAa | 1 | 1 | AY.98 | 0.000079 |
N | 30 | G30V | gGa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.98.1 | 0.000048 |
N | 30 | G30A | gGa | gCa | 1 | 1 | AY.98.1 | 0.000048 |
N | 30 | G30G | ggA | ggG | 1 | 1 | AY.99.2 | 0.000092 |
N | 30 | G30E | gGa | gAa | 1 | 1 | AY.99.2 | 0.000092 |
N | 30 | G30R | Gga | Aga | 1 | 1 | AZ.3 | 0.00152 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B | 0.000128 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1 | 0.000009 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1 | 0.000009 |
N | 30 | G30del1 | Gga | -ga | 1 | 1 | B.1 | 0.000009 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.1 | 0.000018 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1 | 0.000018 |
N | 30 | G30X | Gga | Tga | 1 | 1 | B.1.1 | 0.000018 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 30 | G30G | ggA | ggC | 1 | 1 | B.1.1.1 | 0.000327 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.1.10 | 0.001115 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.1.194 | 0.00495 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.214 | 0.000055 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.1.217 | 0.003636 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.222 | 0.000204 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.229 | 0.005747 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.1.25 | 0.000569 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.284 | 0.000107 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.289 | 0.002083 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.1.294 | 0.001266 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.1.294 | 0.001266 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1.1.302 | 0.002075 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.1.306 | 0.000438 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1.1.317 | 0.000412 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.317 | 0.000412 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.33 | 0.000421 |
N | 30 | G30G | ggA | ggG | 1 | 1 | B.1.1.348 | 0.000796 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1.1.39 | 0.00051 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.417 | 0.002703 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.1.420 | 0.001006 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.433 | 0.001425 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.1.5 | 0.008333 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1.1.519 | 0.00004 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.1.519 | 0.00004 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1.160 | 0.000031 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.160.10 | 0.008065 |
N | 30 | G30G | ggA | ggC | 1 | 1 | B.1.160.7 | 0.002079 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1.177.21 | 0.000076 |
N | 30 | G30G | ggA | ggG | 1 | 1 | B.1.177.33 | 0.001645 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.177.57 | 0.000281 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.177.7 | 0.000165 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.177.7 | 0.000165 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.177.75 | 0.001041 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.177.77 | 0.000726 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.177.80 | 0.001912 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.177.80 | 0.001912 |
N | 30 | G30G | ggA | ggG | 1 | 1 | B.1.177.81 | 0.000189 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.214.2 | 0.0006 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.214.3 | 0.007143 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.221 | 0.000071 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.23 | 0.006061 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.234 | 0.000132 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.258 | 0.000067 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.279 | 0.000514 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.294 | 0.032258 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.301 | 0.005917 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.337 | 0.005587 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1.340 | 0.004292 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.351.2 | 0.000303 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.351.3 | 0.000876 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.36 | 0.000146 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.36 | 0.000146 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.369 | 0.000285 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.403 | 0.003268 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.416 | 0.001269 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.426 | 0.001009 |
N | 30 | G30G | ggA | ggG | 1 | 1 | B.1.429 | 0.000024 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 30 | G30X | Gga | Tga | 1 | 1 | B.1.453 | 0.003236 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.480 | 0.002488 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.509 | 0.000866 |
N | 30 | G30G | ggA | ggG | 1 | 1 | B.1.517 | 0.000427 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.524 | 0.001406 |
N | 30 | G30G | ggA | ggG | 1 | 1 | B.1.525 | 0.000113 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.525 | 0.000113 |
N | 30 | G30G | ggA | ggG | 1 | 1 | B.1.526 | 0.000024 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.538 | 0.008065 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.544 | 0.006024 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.587 | 0.001898 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.595 | 0.000261 |
N | 30 | G30del2 | gGA | g-- | 1 | 1 | B.1.596 | 0.000087 |
N | 30 | G30A | gGa | gCa | 1 | 1 | B.1.604 | 0.017241 |
N | 30 | G30del1 | ggA | gg- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 30 | G30C | GgA | TgT | 1 | 1 | B.1.617.2 | 0.000004 |
N | 30 | G30X | Gga | Tga | 1 | 1 | B.1.617.2 | 0.000004 |
N | 30 | G30del | GGA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 30 | G30R | Gga | Aga | 1 | 1 | B.1.619 | 0.000871 |
N | 30 | G30R | Gga | Cga | 1 | 1 | B.1.621 | 0.000089 |
N | 30 | G30V | gGa | gTa | 1 | 1 | B.1.623 | 0.000536 |
N | 30 | G30E | gGa | gAa | 1 | 1 | B.1.628 | 0.000352 |
N | 30 | G30R | Gga | Cga | 1 | 1 | C.36.3 | 0.000567 |
N | 30 | G30G | ggA | ggG | 1 | 1 | D.2 | 0.000075 |
N | 30 | G30del1 | ggA | gg- | 1 | 1 | D.2 | 0.000075 |
N | 30 | G30G | ggA | ggG | 1 | 1 | P.1.1 | 0.000318 |
N | 30 | G30V | gGa | gTa | 1 | 1 | P.1.12 | 0.000484 |
N | 30 | G30R | Gga | Aga | 1 | 1 | P.1.17 | 0.000162 |
N | 30 | G30G | ggA | ggG | 1 | 1 | P.1.7 | 0.000319 |
N | 30 | G30V | gGa | gTa | 1 | 1 | P.2 | 0.000187 |
N | 30 | G30E | gGa | gAa | 1 | 1 | Q.1 | 0.000126 |
N | 30 | G30G | ggA | ggG | 1 | 1 | Q.1 | 0.000126 |
N | 30 | G30E | gGa | gAa | 1 | 1 | R.1 | 0.00009 |
N | 30 | G30R | Gga | Aga | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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