CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 298

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N298Y298YsyntaCtaT1387813878129165-29167
N298Y298HnonsynTacCac152152129165-29167
N298Y298deldelTAC---1616129165-29167
N298Y298FnonsyntActTc1111129165-29167
N298Y298CnonsyntActGc77129165-29167
N298Y298XnonsyntaCtaA530.629165-29167
N298Y298XnonsyntaCtaG510.229165-29167
N298Y298XnonsyntACtGA510.229165-29167
N298Y298SnonsyntActCc320.66666729165-29167
N298Y298SnonsyntACtCT310.33333329165-29167
N298Y298del1deltAct-c210.529165-29167
N298Y298LnonsyntACtTA210.529165-29167
N298Y298del1delTac-ac210.529165-29167
N298Y298LnonsyntACtTG210.529165-29167
N298Y298PnonsynTAcCCc11129165-29167
N298Y298QnonsynTaCCaG11129165-29167
N298Y298del2deltACt--11129165-29167

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N298Y298YtaCtaT1387813878All0.002654
N298Y298YtaCtaT27192719AY.1180.170342
N298Y298YtaCtaT19811981AY.920.569089
N298Y298YtaCtaT15361536B.1.1.70.001375
N298Y298YtaCtaT843843AY.40.001312
N298Y298YtaCtaT506506AY.440.00308
N298Y298YtaCtaT453453AY.1030.002813
N298Y298YtaCtaT380380B.1.177.70.062644
N298Y298YtaCtaT322322AY.210.611006
N298Y298YtaCtaT319319AY.30.003173
N298Y298YtaCtaT298298AY.250.001792
N298Y298YtaCtaT283283B.1.617.20.001066
N298Y298YtaCtaT277277B.1.6100.98227
N298Y298YtaCtaT272272B.1.1770.003582
N298Y298YtaCtaT258258B.1.36.350.671875
N298Y298YtaCtaT219219B.10.002006
N298Y298YtaCtaT176176B.1.20.00155
N298Y298HTacCac152152All0.000029
N298Y298YtaCtaT150150P.10.002363
N298Y298YtaCtaT137137AY.430.000607
N298Y298YtaCtaT135135B.1.10.002449
N298Y298YtaCtaT127127B.1.2430.008837
N298Y298YtaCtaT119119AY.50.002457
N298Y298YtaCtaT117117B.1.1.5190.004646
N298Y298YtaCtaT115115B.1.2580.007653
N298Y298YtaCtaT7676AY.460.00791
N298Y298YtaCtaT7474AY.1020.001962
N298Y298YtaCtaT6969B.1.4290.001623
N298Y298YtaCtaT6464B.1.1.4320.081013
N298Y298YtaCtaT6060B.1.1.3550.923077
N298Y298YtaCtaT5454AY.1210.007307
N298Y298YtaCtaT5353B.1.1.280.016495
N298Y298HTacCac5252B.1.1.70.000047
N298Y298YtaCtaT4949AY.46.60.003538
N298Y298YtaCtaT4848AY.290.000757
N298Y298YtaCtaT4646B.1.3510.001367
N298Y298YtaCtaT4545AY.420.00181
N298Y298YtaCtaT4343B.1.2340.005674
N298Y298YtaCtaT4242AY.330.002805
N298Y298YtaCtaT4040AY.170.327869
N298Y298YtaCtaT4040AY.390.000988
N298Y298YtaCtaT3333B.1.177.430.048744
N298Y298YtaCtaT3333B.1.177.540.020012
N298Y298YtaCtaT3131AY.830.053448
N298Y298YtaCtaT3030C.370.003482
N298Y298YtaCtaT2929B.1.258.170.003015
N298Y298YtaCtaT2929P.1.10.009212
N298Y298YtaCtaT2727B.1.1.700.009209
N298Y298YtaCtaT2727B.1.1600.000842
N298Y298YtaCtaT2424B.1.1.3540.105263
N298Y298YtaCtaT2323B.610.132184
N298Y298YtaCtaT2222AY.450.002677
N298Y298YtaCtaT2222P.20.004106
N298Y298YtaCtaT2121AY.4.20.000455
N298Y298YtaCtaT2020P.1.140.000956
N298Y298YtaCtaT2020R.10.0018
N298Y298YtaCtaT1919B.1.3200.023661
N298Y298YtaCtaT1717AY.200.000661
N298Y298YtaCtaT1717B.1.258.140.016667
N298Y298delTAC---1616All0.000003
N298Y298YtaCtaT1515AY.1170.001268
N298Y298YtaCtaT1515AY.39.10.000594
N298Y298YtaCtaT1515B.1.1.2070.01773
N298Y298YtaCtaT1515B.1.258.100.170455
N298Y298HTacCac1515B.1.617.20.000056
N298Y298YtaCtaT1414AY.470.000435
N298Y298YtaCtaT1414B.1.5960.00122
N298Y298YtaCtaT1414P.1.70.00447
N298Y298YtaCtaT1313AY.270.000841
N298Y298HTacCac1313B.1.177.860.002385
N298Y298YtaCtaT1313B.1.360.001897
N298Y298YtaCtaT1313B.1.6370.00095
N298Y298YtaCtaT1212AY.260.00034
N298Y298YtaCtaT1212AY.740.001388
N298Y298YtaCtaT1212B.1.1.500.008147
N298Y298YtaCtaT1212B.1.5311
N298Y298FtActTc1111All0.000002
N298Y298YtaCtaT1111AY.1190.000388
N298Y298YtaCtaT1111B.1.2210.000781
N298Y298YtaCtaT1111B.1.3110.00302
N298Y298YtaCtaT1010AY.610.001048
N298Y298YtaCtaT1010B.1.351.20.003026
N298Y298YtaCtaT1010B.1.4270.000505
N298Y298YtaCtaT1010B.1.6210.000885
N298Y298YtaCtaT99AY.1200.000335
N298Y298YtaCtaT99AY.3.10.000767
N298Y298HTacCac99AY.40.000014
N298Y298YtaCtaT99AY.5.40.00249
N298Y298YtaCtaT99AY.75.10.001623
N298Y298YtaCtaT99AY.9.20.000331
N298Y298YtaCtaT99B.1.617.10.001161
N298Y298YtaCtaT88AY.1000.000368
N298Y298YtaCtaT88AY.1130.001139
N298Y298YtaCtaT88AY.16.10.003759
N298Y298YtaCtaT88AY.230.000558
N298Y298YtaCtaT88AY.340.000776
N298Y298YtaCtaT88AY.370.002528
N298Y298YtaCtaT88B.1.1.1890.012103
N298Y298YtaCtaT88B.1.36.290.004139
N298Y298YtaCtaT88B.1.3910.009019
N298Y298YtaCtaT88B.1.5260.000188
N298Y298CtActGc77All0.000001
N298Y298YtaCtaT77AY.1100.000789
N298Y298YtaCtaT77AY.46.50.001389
N298Y298YtaCtaT77AY.750.000392
N298Y298YtaCtaT77B.1.1.2140.000388
N298Y298YtaCtaT77B.1.1.250.00398
N298Y298YtaCtaT77B.1.3460.009174
N298Y298YtaCtaT77B.1.466.20.002739
N298Y298YtaCtaT77B.1.5250.000792
N298Y298YtaCtaT66AY.1050.003859
N298Y298YtaCtaT66AY.880.005305
N298Y298YtaCtaT66AY.910.004383
N298Y298YtaCtaT66AY.980.000474
N298Y298YtaCtaT66B0.000767
N298Y298HTacCac66B.10.000055
N298Y298YtaCtaT66B.1.1.330.002525
N298Y298HTacCac66B.1.1770.000079
N298Y298YtaCtaT66B.1.177.80.004515
N298Y298YtaCtaT66B.1.6280.002114
N298Y298XtaCtaA35All0.000001
N298Y298XtaCtaG15All0
N298Y298XtACtGA15All0
N298Y298HTacCac55AY.200.000194
N298Y298HTacCac55AY.440.00003
N298Y298YtaCtaT55AY.540.000477
N298Y298YtaCtaT55AY.640.002976
N298Y298YtaCtaT55AY.70.00098
N298Y298YtaCtaT55AY.9.10.000419
N298Y298YtaCtaT55B.1.1.1760.002197
N298Y298YtaCtaT55B.1.1.2200.009294
N298Y298YtaCtaT55B.1.1110.005875
N298Y298YtaCtaT55B.1.177.560.003338
N298Y298YtaCtaT55B.1.5950.001305
N298Y298YtaCtaT55C.350.00387
N298Y298YtaCtaT55D.20.000375
N298Y298YtaCtaT55P.1.150.001162
N298Y298YtaCtaT55Q.10.000632
N298Y298YtaCtaT44AE.80.001956
N298Y298YtaCtaT44AY.160.001519
N298Y298YtaCtaT44AY.4.50.00043
N298Y298YtaCtaT44AY.46.20.002541
N298Y298YtaCtaT44AY.550.00367
N298Y298YtaCtaT44AY.60.000165
N298Y298YtaCtaT44AY.770.00451
N298Y298YtaCtaT44AY.98.10.000194
N298Y298YtaCtaT44B.1.177.190.005722
N298Y298YtaCtaT44B.1.3360.009756
N298Y298YtaCtaT44B.1.3690.001141
N298Y298YtaCtaT44B.1.3960.002823
N298Y298YtaCtaT44B.1.4700.005618
N298Y298YtaCtaT44B.1.4800.00995
N298Y298YtaCtaT44B.1.5750.001214
N298Y298YtaCtaT44B.1.6230.002146
N298Y298YtaCtaT44Q.30.00058
N298Y298YtaCtaT44Q.80.00066
N298Y298StActCc23All0
N298Y298StACtCT13All0
N298Y298YtaCtaT33AY.1110.000549
N298Y298YtaCtaT33AY.240.001293
N298Y298HTacCac33AY.30.00003
N298Y298YtaCtaT33AY.320.001597
N298Y298YtaCtaT33AY.360.000445
N298Y298delTAC---33AY.430.000013
N298Y298YtaCtaT33AY.5.30.001012
N298Y298YtaCtaT33AY.890.014706
N298Y298YtaCtaT33AY.99.20.000276
N298Y298YtaCtaT33B.1.1.1290.027523
N298Y298YtaCtaT33B.1.1.2220.000612
N298Y298YtaCtaT33B.1.1.2840.000322
N298Y298YtaCtaT33B.1.1.3060.001315
N298Y298YtaCtaT33B.1.1.4090.008499
N298Y298YtaCtaT33B.1.1.4640.004418
N298Y298YtaCtaT33B.1.1.630.001157
N298Y298CtActGc33B.1.1.70.000003
N298Y298YtaCtaT33B.1.1.80.010753
N298Y298YtaCtaT33B.1.160.280.008772
N298Y298YtaCtaT33B.1.177.810.000568
N298Y298YtaCtaT33B.1.177.840.02
N298Y298YtaCtaT33B.1.1920.027778
N298Y298HTacCac33B.1.20.000026
N298Y298YtaCtaT33B.1.2410.002435
N298Y298YtaCtaT33B.1.36.170.001482
N298Y298YtaCtaT33B.1.36.80.003
N298Y298YtaCtaT33B.1.438.10.000322
N298Y298HTacCac33B.1.5260.000071
N298Y298YtaCtaT33B.1.6090.001438
N298Y298YtaCtaT33C.160.003181
N298Y298YtaCtaT220.111111
N298Y298delTAC---220.111111
N298Y298YtaCtaT22A.2.50.000998
N298Y298YtaCtaT22A.2.5.30.020619
N298Y298del1Tac-ac12All0
N298Y298LtACtTA12All0
N298Y298LtACtTG12All0
N298Y298del1tAct-c12All0
N298Y298YtaCtaT22AY.1040.003968
N298Y298YtaCtaT22AY.1060.00067
N298Y298YtaCtaT22AY.1070.000932
N298Y298YtaCtaT22AY.1090.001479
N298Y298YtaCtaT22AY.1140.000462
N298Y298YtaCtaT22AY.1160.000574
N298Y298HTacCac22AY.250.000012
N298Y298FtActTc22AY.250.000012
N298Y298YtaCtaT22AY.350.000466
N298Y298HTacCac22AY.360.000296
N298Y298YtaCtaT22AY.4.2.10.000298
N298Y298HTacCac22AY.420.00008
N298Y298HTacCac22AY.430.000009
N298Y298YtaCtaT22AY.46.40.000329
N298Y298HTacCac22AY.50.000041
N298Y298YtaCtaT22AY.520.001629
N298Y298YtaCtaT22AY.530.000575
N298Y298YtaCtaT22AY.570.001312
N298Y298YtaCtaT22AY.650.001066
N298Y298YtaCtaT22AY.790.002421
N298Y298YtaCtaT22AY.810.003984
N298Y298YtaCtaT22AY.840.000875
N298Y298YtaCtaT22AY.950.001522
N298Y298YtaCtaT22AY.960.004149
N298Y298delTAC---22B.10.000018
N298Y298delTAC---22B.1.10.000036
N298Y298YtaCtaT22B.1.1.10.000653
N298Y298YtaCtaT22B.1.1.2770.001517
N298Y298YtaCtaT22B.1.1.3720.001377
N298Y298YtaCtaT22B.1.1.4340.000697
N298Y298YtaCtaT22B.1.1.4860.003155
N298Y298YtaCtaT22B.1.1.5150.04
N298Y298YtaCtaT22B.1.1.5180.012658
N298Y298YtaCtaT22B.1.177.150.001262
N298Y298HTacCac22B.1.2210.000142
N298Y298YtaCtaT22B.1.2400.000431
N298Y298YtaCtaT22B.1.3610.002577
N298Y298YtaCtaT22B.1.4000.000858
N298Y298HTacCac22B.1.4740.003802
N298Y298YtaCtaT22B.1.5170.000854
N298Y298YtaCtaT22B.1.5240.002813
N298Y298YtaCtaT22B.1.5620.037037
N298Y298YtaCtaT22B.1.5820.000981
N298Y298YtaCtaT22B.1.6120.005305
N298Y298YtaCtaT22B.1.617.30.00597
N298Y298YtaCtaT22B.1.6380.105263
N298Y298YtaCtaT22B.1.9.50.011364
N298Y298YtaCtaT22C.360.001821
N298Y298YtaCtaT22P.1.100.000539
N298Y298YtaCtaT22P.1.120.000968
N298Y298YtaCtaT22P.1.160.000748
N298Y298YtaCtaT11A.20.000662
N298Y298YtaCtaT11A.2.40.003367
N298Y298YtaCtaT11AA.10.007246
N298Y298YtaCtaT11AD.20.000219
N298Y298del2tACt--11All0
N298Y298QTaCCaG11All0
N298Y298PTAcCCc11All0
N298Y298YtaCtaT11AS.10.009524
N298Y298YtaCtaT11AY.1010.00049
N298Y298HTacCac11AY.1030.000006
N298Y298HTacCac11AY.1190.000035
N298Y298YtaCtaT11AY.130.000161
N298Y298YtaCtaT11AY.20.000356
N298Y298XtACtGA11AY.230.00007
N298Y298HTacCac11AY.230.00007
N298Y298YtaCtaT11AY.23.10.000417
N298Y298delTAC---11AY.250.000006
N298Y298HTacCac11AY.260.000028
N298Y298HTacCac11AY.3.10.000085
N298Y298FtActTc11AY.40.000002
N298Y298YtaCtaT11AY.4.10.000737
N298Y298HTacCac11AY.4.50.000107
N298Y298YtaCtaT11AY.400.000964
N298Y298CtActGc11AY.460.000104
N298Y298HTacCac11AY.460.000104
N298Y298YtaCtaT11AY.46.10.001027
N298Y298HTacCac11AY.5.40.000277
N298Y298delTAC---11AY.670.000464
N298Y298YtaCtaT11AY.680.000274
N298Y298delTAC---11AY.750.000056
N298Y298HTacCac11AY.790.001211
N298Y298YtaCtaT11AY.850.000427
N298Y298YtaCtaT11AY.90.000068
N298Y298del2tACt--11AY.9.10.000084
N298Y298YtaCtaT11AY.990.001049
N298Y298YtaCtaT11AZ.30.00152
N298Y298XtaCtaA11B.10.000009
N298Y298CtActGc11B.10.000009
N298Y298FtActTc11B.10.000009
N298Y298del1Tac-ac11B.1.10.000018
N298Y298XtaCtaG11B.1.10.000018
N298Y298StActCc11B.1.10.000018
N298Y298FtActTc11B.1.10.000018
N298Y298LtACtTG11B.1.10.000018
N298Y298YtaCtaT11B.1.1.1480.008772
N298Y298YtaCtaT11B.1.1.1610.003534
N298Y298YtaCtaT11B.1.1.1980.001468
N298Y298YtaCtaT11B.1.1.2160.00089
N298Y298YtaCtaT11B.1.1.2210.010101
N298Y298YtaCtaT11B.1.1.2280.003049
N298Y298YtaCtaT11B.1.1.2650.003155
N298Y298QTaCCaG11B.1.1.270.00565
N298Y298YtaCtaT11B.1.1.2820.011628
N298Y298PTAcCCc11B.1.1.3060.000438
N298Y298YtaCtaT11B.1.1.3110.000358
N298Y298YtaCtaT11B.1.1.3180.000302
N298Y298YtaCtaT11B.1.1.3480.000796
N298Y298YtaCtaT11B.1.1.370.000193
N298Y298YtaCtaT11B.1.1.3850.004464
N298Y298YtaCtaT11B.1.1.3890.006061
N298Y298YtaCtaT11B.1.1.3960.045455
N298Y298YtaCtaT11B.1.1.3970.002252
N298Y298YtaCtaT11B.1.1.4160.000905
N298Y298HTacCac11B.1.1.4310.016129
N298Y298YtaCtaT11B.1.1.440.00241
N298Y298YtaCtaT11B.1.1.4630.0625
N298Y298YtaCtaT11B.1.1.4820.023256
N298Y298YtaCtaT11B.1.1.5230.001563
N298Y298FtActTc11B.1.1.70.000001
N298Y298delTAC---11B.1.1.70.000001
N298Y298YtaCtaT11B.1.1.830.00271
N298Y298YtaCtaT11B.1.1.980.018519
N298Y298YtaCtaT11B.1.1390.000733
N298Y298HTacCac11B.1.1600.000031
N298Y298YtaCtaT11B.1.160.300.002976
N298Y298HTacCac11B.1.177.230.003236
N298Y298YtaCtaT11B.1.177.310.011494
N298Y298YtaCtaT11B.1.177.350.000691
N298Y298YtaCtaT11B.1.177.40.000211
N298Y298YtaCtaT11B.1.177.440.000519
N298Y298YtaCtaT11B.1.177.580.001332
N298Y298StACtCT11B.1.177.630.002703
N298Y298YtaCtaT11B.1.177.630.002703
N298Y298YtaCtaT11B.1.177.710.010101
N298Y298YtaCtaT11B.1.177.750.001041
N298Y298YtaCtaT11B.1.177.790.002342
N298Y298HTacCac11B.1.177.810.000189
N298Y298delTAC---11B.1.177.830.001481
N298Y298YtaCtaT11B.1.177.860.000183
N298Y298YtaCtaT11B.1.2060.000816
N298Y298YtaCtaT11B.1.2360.002053
N298Y298XtaCtaA11B.1.2430.00007
N298Y298HTacCac11B.1.2430.00007
N298Y298del1tAct-c11B.1.2430.00007
N298Y298YtaCtaT11B.1.2650.001271
N298Y298YtaCtaT11B.1.2790.000514
N298Y298YtaCtaT11B.1.30.002618
N298Y298CtActGc11B.1.3240.001605
N298Y298YtaCtaT11B.1.3490.000715
N298Y298YtaCtaT11B.1.350.008475
N298Y298HTacCac11B.1.3510.00003
N298Y298YtaCtaT11B.1.36.180.00042
N298Y298YtaCtaT11B.1.36.200.016949
N298Y298YtaCtaT11B.1.36.220.001208
N298Y298FtActTc11B.1.36.360.000602
N298Y298YtaCtaT11B.1.3630.012987
N298Y298YtaCtaT11B.1.3990.001934
N298Y298YtaCtaT11B.1.4040.001302
N298Y298YtaCtaT11B.1.4250.002994
N298Y298StActCc11B.1.4270.00005
N298Y298FtActTc11B.1.4270.00005
N298Y298XtaCtaA11B.1.4290.000024
N298Y298FtActTc11B.1.4480.002625
N298Y298YtaCtaT11B.1.4560.003268
N298Y298CtActGc11B.1.5410.004425
N298Y298YtaCtaT11B.1.5440.006024
N298Y298YtaCtaT11B.1.5600.00463
N298Y298delTAC---11B.1.5600.00463
N298Y298YtaCtaT11B.1.5610.000397
N298Y298YtaCtaT11B.1.5640.000426
N298Y298HTacCac11B.1.5640.000426
N298Y298YtaCtaT11B.1.5650.00081
N298Y298YtaCtaT11B.1.5770.000687
N298Y298HTacCac11B.1.5880.00091
N298Y298LtACtTA11B.1.5950.000261
N298Y298YtaCtaT11B.1.6000.005848
N298Y298YtaCtaT11B.1.6030.010638
N298Y298FtActTc11B.1.617.20.000004
N298Y298YtaCtaT11B.1.6250.002353
N298Y298delTAC---11B.1.6300.005236
N298Y298YtaCtaT11B.280.003279
N298Y298YtaCtaT11B.30.000831
N298Y298YtaCtaT11B.300.014706
N298Y298YtaCtaT11B.310.003731
N298Y298YtaCtaT11B.400.000364
N298Y298YtaCtaT11B.520.010101
N298Y298YtaCtaT11C.230.005814
N298Y298YtaCtaT11C.260.007353
N298Y298YtaCtaT11C.37.10.002618
N298Y298FtActTc11D.20.000075
N298Y298HTacCac11D.20.000075
N298Y298YtaCtaT11K.20.04
N298Y298YtaCtaT11P.1.20.001156
N298Y298YtaCtaT11P.30.001595
N298Y298YtaCtaT11Q.40.000455