CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 296 | T296I | nonsyn | aCt | aTt | 2451 | 2451 | 1 | 29159-29161 | |
N | 296 | T296T | syn | acT | acC | 150 | 127 | 0.846667 | 29159-29161 | |
N | 296 | T296T | syn | acT | acG | 150 | 13 | 0.0866667 | 29159-29161 | |
N | 296 | T296T | syn | acT | acA | 150 | 10 | 0.0666667 | 29159-29161 | |
N | 296 | T296A | nonsyn | Act | Gct | 32 | 32 | 1 | 29159-29161 | |
N | 296 | T296S | nonsyn | aCt | aGt | 28 | 24 | 0.857143 | 29159-29161 | |
N | 296 | T296S | nonsyn | Act | Tct | 28 | 4 | 0.142857 | 29159-29161 | |
N | 296 | T296N | nonsyn | aCt | aAt | 13 | 13 | 1 | 29159-29161 | |
N | 296 | T296del | del | ACT | --- | 13 | 13 | 1 | 29159-29161 | |
N | 296 | T296P | nonsyn | Act | Cct | 1 | 1 | 1 | 29159-29161 | |
N | 296 | T296del2 | del | aCT | a-- | 1 | 1 | 1 | 29159-29161 | |
N | 296 | T296V | nonsyn | ACt | GTt | 1 | 1 | 1 | 29159-29161 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 296 | T296I | aCt | aTt | 2451 | 2451 | All | 0.000469 |
N | 296 | T296I | aCt | aTt | 397 | 397 | B.1.1.7 | 0.000355 |
N | 296 | T296I | aCt | aTt | 227 | 227 | AY.25 | 0.001365 |
N | 296 | T296I | aCt | aTt | 202 | 202 | AY.4 | 0.000314 |
N | 296 | T296I | aCt | aTt | 183 | 183 | B.1.617.2 | 0.000689 |
N | 296 | T296I | aCt | aTt | 167 | 167 | AY.103 | 0.001037 |
N | 296 | T296T | acT | acC | 127 | 150 | All | 0.000024 |
N | 296 | T296T | acT | acG | 13 | 150 | All | 0.000002 |
N | 296 | T296T | acT | acA | 10 | 150 | All | 0.000002 |
N | 296 | T296I | aCt | aTt | 88 | 88 | B.1.1.214 | 0.00488 |
N | 296 | T296I | aCt | aTt | 81 | 81 | AY.44 | 0.000493 |
N | 296 | T296I | aCt | aTt | 80 | 80 | AY.5 | 0.001652 |
N | 296 | T296I | aCt | aTt | 60 | 60 | P.1.14 | 0.002868 |
N | 296 | T296I | aCt | aTt | 51 | 51 | B.1.526 | 0.001199 |
N | 296 | T296I | aCt | aTt | 50 | 50 | B.1.429 | 0.001176 |
N | 296 | T296I | aCt | aTt | 48 | 48 | B.1.2 | 0.000423 |
N | 296 | T296I | aCt | aTt | 42 | 42 | AY.26 | 0.001189 |
N | 296 | T296I | aCt | aTt | 39 | 39 | AY.102 | 0.001034 |
N | 296 | T296I | aCt | aTt | 36 | 36 | AY.3 | 0.000358 |
N | 296 | T296I | aCt | aTt | 36 | 36 | AY.46.5 | 0.007143 |
N | 296 | T296I | aCt | aTt | 33 | 33 | AY.43 | 0.000146 |
N | 296 | T296I | aCt | aTt | 33 | 33 | B.1.258 | 0.002196 |
N | 296 | T296A | Act | Gct | 32 | 32 | All | 0.000006 |
N | 296 | T296S | aCt | aGt | 24 | 28 | All | 0.000005 |
N | 296 | T296S | Act | Tct | 4 | 28 | All | 0.000001 |
N | 296 | T296I | aCt | aTt | 25 | 25 | B.1.1.451 | 0.961538 |
N | 296 | T296I | aCt | aTt | 23 | 23 | P.1 | 0.000362 |
N | 296 | T296I | aCt | aTt | 22 | 22 | AY.110 | 0.002479 |
N | 296 | T296I | aCt | aTt | 21 | 21 | AY.119 | 0.000741 |
N | 296 | T296I | aCt | aTt | 18 | 18 | AY.75 | 0.001008 |
N | 296 | T296I | aCt | aTt | 18 | 18 | B.1 | 0.000165 |
N | 296 | T296T | acT | acC | 16 | 17 | B.1.1.7 | 0.000014 |
N | 296 | T296T | acT | acG | 1 | 17 | B.1.1.7 | 0.000001 |
N | 296 | T296I | aCt | aTt | 15 | 15 | AY.29 | 0.000237 |
N | 296 | T296I | aCt | aTt | 15 | 15 | AY.39 | 0.000371 |
N | 296 | T296I | aCt | aTt | 15 | 15 | B.1.1 | 0.000272 |
N | 296 | T296T | acT | acC | 15 | 15 | B.1.1.374 | 0.035629 |
N | 296 | T296I | aCt | aTt | 15 | 15 | B.1.160 | 0.000468 |
N | 296 | T296I | aCt | aTt | 14 | 14 | AY.34.1 | 0.007139 |
N | 296 | T296N | aCt | aAt | 13 | 13 | All | 0.000002 |
N | 296 | T296del | ACT | --- | 13 | 13 | All | 0.000002 |
N | 296 | T296T | acT | acC | 13 | 13 | B.1.2 | 0.000114 |
N | 296 | T296T | acT | acC | 11 | 12 | B.1.617.2 | 0.000041 |
N | 296 | T296T | acT | acG | 1 | 12 | B.1.617.2 | 0.000004 |
N | 296 | T296I | aCt | aTt | 11 | 11 | AY.100 | 0.000506 |
N | 296 | T296I | aCt | aTt | 11 | 11 | AY.114 | 0.002542 |
N | 296 | T296I | aCt | aTt | 11 | 11 | B.1.1.519 | 0.000437 |
N | 296 | T296I | aCt | aTt | 11 | 11 | B.1.177 | 0.000145 |
N | 296 | T296I | aCt | aTt | 10 | 10 | AY.14 | 0.00088 |
N | 296 | T296I | aCt | aTt | 10 | 10 | AY.20 | 0.000389 |
N | 296 | T296T | acT | acG | 6 | 10 | AY.25 | 0.000036 |
N | 296 | T296T | acT | acC | 3 | 10 | AY.25 | 0.000018 |
N | 296 | T296T | acT | acA | 1 | 10 | AY.25 | 0.000006 |
N | 296 | T296T | acT | acC | 9 | 10 | AY.4 | 0.000014 |
N | 296 | T296T | acT | acG | 1 | 10 | AY.4 | 0.000002 |
N | 296 | T296I | aCt | aTt | 10 | 10 | B.12 | 0.064103 |
N | 296 | T296I | aCt | aTt | 9 | 9 | AY.118 | 0.000564 |
N | 296 | T296I | aCt | aTt | 9 | 9 | AY.39.1 | 0.000357 |
N | 296 | T296T | acT | acC | 7 | 9 | B.1 | 0.000064 |
N | 296 | T296T | acT | acA | 2 | 9 | B.1 | 0.000018 |
N | 296 | T296I | aCt | aTt | 9 | 9 | B.1.1.256 | 0.123288 |
N | 296 | T296I | aCt | aTt | 9 | 9 | B.1.478 | 0.105882 |
N | 296 | T296I | aCt | aTt | 9 | 9 | C.37 | 0.001045 |
N | 296 | T296I | aCt | aTt | 8 | 8 | AY.4.2 | 0.000174 |
N | 296 | T296I | aCt | aTt | 8 | 8 | AY.61 | 0.000838 |
N | 296 | T296I | aCt | aTt | 8 | 8 | B.1.1.157 | 0.007306 |
N | 296 | T296S | aCt | aGt | 7 | 7 | B.1.2 | 0.000062 |
N | 296 | T296I | aCt | aTt | 7 | 7 | B.1.525 | 0.000792 |
N | 296 | T296I | aCt | aTt | 7 | 7 | B.1.596 | 0.00061 |
N | 296 | T296I | aCt | aTt | 7 | 7 | Q.3 | 0.001015 |
N | 296 | T296T | acT | acC | 4 | 6 | AY.103 | 0.000025 |
N | 296 | T296T | acT | acA | 2 | 6 | AY.103 | 0.000012 |
N | 296 | T296I | aCt | aTt | 6 | 6 | AY.23 | 0.000418 |
N | 296 | T296S | aCt | aGt | 6 | 6 | AY.43 | 0.000027 |
N | 296 | T296T | acT | acC | 6 | 6 | AY.44 | 0.000037 |
N | 296 | T296I | aCt | aTt | 6 | 6 | B.1.234 | 0.000792 |
N | 296 | T296T | acT | acC | 6 | 6 | B.1.438 | 0.039216 |
N | 296 | T296I | aCt | aTt | 5 | 5 | AY.113 | 0.000712 |
N | 296 | T296T | acT | acC | 5 | 5 | AY.9.2 | 0.000184 |
N | 296 | T296I | aCt | aTt | 5 | 5 | AY.99.2 | 0.000461 |
N | 296 | T296I | aCt | aTt | 5 | 5 | B.1.221 | 0.000355 |
N | 296 | T296A | Act | Gct | 5 | 5 | B.1.429 | 0.000118 |
N | 296 | T296T | acT | acC | 4 | 4 | AY.39.1 | 0.000158 |
N | 296 | T296I | aCt | aTt | 4 | 4 | AY.46 | 0.000416 |
N | 296 | T296I | aCt | aTt | 4 | 4 | AY.47 | 0.000124 |
N | 296 | T296I | aCt | aTt | 4 | 4 | AY.48 | 0.00186 |
N | 296 | T296I | aCt | aTt | 4 | 4 | B.1.160.29 | 0.016878 |
N | 296 | T296I | aCt | aTt | 4 | 4 | B.1.177.60 | 0.000874 |
N | 296 | T296I | aCt | aTt | 4 | 4 | B.1.243 | 0.000278 |
N | 296 | T296I | aCt | aTt | 4 | 4 | B.1.575 | 0.001214 |
N | 296 | T296I | aCt | aTt | 4 | 4 | B.1.623 | 0.002146 |
N | 296 | T296I | aCt | aTt | 4 | 4 | D.2 | 0.0003 |
N | 296 | T296A | Act | Gct | 3 | 3 | AY.103 | 0.000019 |
N | 296 | T296I | aCt | aTt | 3 | 3 | AY.105 | 0.001929 |
N | 296 | T296I | aCt | aTt | 3 | 3 | AY.109 | 0.002219 |
N | 296 | T296I | aCt | aTt | 3 | 3 | AY.117 | 0.000254 |
N | 296 | T296I | aCt | aTt | 3 | 3 | AY.42 | 0.000121 |
N | 296 | T296del | ACT | --- | 3 | 3 | AY.43 | 0.000013 |
N | 296 | T296I | aCt | aTt | 3 | 3 | AY.46.3 | 0.002801 |
N | 296 | T296T | acT | acC | 3 | 3 | AY.61 | 0.000314 |
N | 296 | T296I | aCt | aTt | 3 | 3 | AY.7 | 0.000588 |
N | 296 | T296I | aCt | aTt | 3 | 3 | AY.82 | 0.004071 |
N | 296 | T296I | aCt | aTt | 3 | 3 | AY.98.1 | 0.000145 |
N | 296 | T296I | aCt | aTt | 3 | 3 | B | 0.000383 |
N | 296 | T296N | aCt | aAt | 3 | 3 | B.1.1.7 | 0.000003 |
N | 296 | T296A | Act | Gct | 3 | 3 | B.1.1.7 | 0.000003 |
N | 296 | T296I | aCt | aTt | 3 | 3 | B.1.427 | 0.000151 |
N | 296 | T296I | aCt | aTt | 3 | 3 | B.1.438.1 | 0.000322 |
N | 296 | T296A | Act | Gct | 3 | 3 | B.1.617.2 | 0.000011 |
N | 296 | T296S | aCt | aGt | 2 | 3 | B.1.617.2 | 0.000008 |
N | 296 | T296S | Act | Tct | 1 | 3 | B.1.617.2 | 0.000004 |
N | 296 | T296A | Act | Gct | 3 | 3 | B.1.637 | 0.000219 |
N | 296 | T296I | aCt | aTt | 3 | 3 | B.1.637 | 0.000219 |
N | 296 | T296T | acT | acC | 2 | 3 | P.1 | 0.000032 |
N | 296 | T296T | acT | acA | 1 | 3 | P.1 | 0.000016 |
N | 296 | T296del | ACT | --- | 2 | 2 | 0.111111 | |
N | 296 | T296A | Act | Gct | 2 | 2 | AY.109 | 0.001479 |
N | 296 | T296S | aCt | aGt | 2 | 2 | AY.119 | 0.000071 |
N | 296 | T296I | aCt | aTt | 2 | 2 | AY.33 | 0.000134 |
N | 296 | T296A | Act | Gct | 2 | 2 | AY.4 | 0.000003 |
N | 296 | T296A | Act | Gct | 2 | 2 | AY.43 | 0.000009 |
N | 296 | T296N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
N | 296 | T296T | acT | acC | 2 | 2 | AY.43 | 0.000009 |
N | 296 | T296I | aCt | aTt | 2 | 2 | AY.45 | 0.000243 |
N | 296 | T296T | acT | acC | 2 | 2 | AY.47 | 0.000062 |
N | 296 | T296I | aCt | aTt | 2 | 2 | AY.54 | 0.000191 |
N | 296 | T296I | aCt | aTt | 2 | 2 | AY.6 | 0.000082 |
N | 296 | T296I | aCt | aTt | 2 | 2 | AY.67 | 0.000929 |
N | 296 | T296I | aCt | aTt | 2 | 2 | AY.73 | 0.001331 |
N | 296 | T296I | aCt | aTt | 2 | 2 | AY.85 | 0.000854 |
N | 296 | T296I | aCt | aTt | 2 | 2 | AY.98 | 0.000158 |
N | 296 | T296A | Act | Gct | 2 | 2 | B.1 | 0.000018 |
N | 296 | T296T | acT | acA | 1 | 2 | B.1.1 | 0.000018 |
N | 296 | T296T | acT | acC | 1 | 2 | B.1.1 | 0.000018 |
N | 296 | T296T | acT | acC | 2 | 2 | B.1.1.209 | 0.017857 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.1.216 | 0.001781 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.1.222 | 0.000408 |
N | 296 | T296T | acT | acC | 2 | 2 | B.1.1.222 | 0.000408 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.1.25 | 0.001137 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.1.28 | 0.000622 |
N | 296 | T296S | aCt | aGt | 2 | 2 | B.1.1.463 | 0.125 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.160.16 | 0.001859 |
N | 296 | T296A | Act | Gct | 2 | 2 | B.1.177 | 0.000026 |
N | 296 | T296T | acT | acC | 2 | 2 | B.1.177 | 0.000026 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.177.5 | 0.002484 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.258.17 | 0.000208 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.311 | 0.000549 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.351 | 0.000059 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.36.38 | 0.003284 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.517 | 0.000854 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.541 | 0.00885 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.564 | 0.000852 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.617.1 | 0.000258 |
N | 296 | T296N | aCt | aAt | 2 | 2 | B.1.617.2 | 0.000008 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.621 | 0.000177 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.628 | 0.000705 |
N | 296 | T296I | aCt | aTt | 2 | 2 | B.1.93 | 0.001867 |
N | 296 | T296I | aCt | aTt | 2 | 2 | P.1.17 | 0.000324 |
N | 296 | T296I | aCt | aTt | 2 | 2 | Q.4 | 0.00091 |
N | 296 | T296T | acT | acC | 1 | 1 | A | 0.000387 |
N | 296 | T296I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
N | 296 | T296V | ACt | GTt | 1 | 1 | All | 0 |
N | 296 | T296del2 | aCT | a-- | 1 | 1 | All | 0 |
N | 296 | T296P | Act | Cct | 1 | 1 | All | 0 |
N | 296 | T296A | Act | Gct | 1 | 1 | AW.1 | 0.003049 |
N | 296 | T296T | acT | acC | 1 | 1 | AY.100 | 0.000046 |
N | 296 | T296T | acT | acC | 1 | 1 | AY.102 | 0.000027 |
N | 296 | T296N | aCt | aAt | 1 | 1 | AY.102 | 0.000027 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.106 | 0.000335 |
N | 296 | T296S | aCt | aGt | 1 | 1 | AY.106 | 0.000335 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.111 | 0.000183 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
N | 296 | T296T | acT | acC | 1 | 1 | AY.116 | 0.000287 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.120 | 0.000037 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.13 | 0.000161 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.16 | 0.00038 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.17 | 0.008197 |
N | 296 | T296T | acT | acG | 1 | 1 | AY.23 | 0.00007 |
N | 296 | T296S | aCt | aGt | 1 | 1 | AY.25 | 0.000006 |
N | 296 | T296del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.27 | 0.000065 |
N | 296 | T296T | acT | acG | 1 | 1 | AY.29 | 0.000016 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
N | 296 | T296N | aCt | aAt | 1 | 1 | AY.3 | 0.00001 |
N | 296 | T296A | Act | Gct | 1 | 1 | AY.3 | 0.00001 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.3.1 | 0.000085 |
N | 296 | T296A | Act | Gct | 1 | 1 | AY.30 | 0.000396 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.35 | 0.000233 |
N | 296 | T296S | aCt | aGt | 1 | 1 | AY.4 | 0.000002 |
N | 296 | T296N | aCt | aAt | 1 | 1 | AY.4 | 0.000002 |
N | 296 | T296T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.41 | 0.000294 |
N | 296 | T296del2 | aCT | a-- | 1 | 1 | AY.43 | 0.000004 |
N | 296 | T296A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.5.4 | 0.000277 |
N | 296 | T296S | aCt | aGt | 1 | 1 | AY.51 | 0.000909 |
N | 296 | T296del | ACT | --- | 1 | 1 | AY.67 | 0.000464 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
N | 296 | T296T | acT | acC | 1 | 1 | AY.7.1 | 0.000113 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
N | 296 | T296A | Act | Gct | 1 | 1 | AY.7.2 | 0.000559 |
N | 296 | T296del | ACT | --- | 1 | 1 | AY.75 | 0.000056 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.79 | 0.001211 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.90 | 0.000684 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.91 | 0.00073 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
N | 296 | T296I | aCt | aTt | 1 | 1 | AZ.2 | 0.000821 |
N | 296 | T296S | Act | Tct | 1 | 1 | B | 0.000128 |
N | 296 | T296del | ACT | --- | 1 | 1 | B.1 | 0.000009 |
N | 296 | T296del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.122 | 0.045455 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.170 | 0.001247 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.198 | 0.001468 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.204 | 0.00304 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.207 | 0.001182 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.220 | 0.001859 |
N | 296 | T296T | acT | acG | 1 | 1 | B.1.1.28 | 0.000311 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.301 | 0.001179 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.305 | 0.003861 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
N | 296 | T296P | Act | Cct | 1 | 1 | B.1.1.306 | 0.000438 |
N | 296 | T296N | aCt | aAt | 1 | 1 | B.1.1.311 | 0.000358 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.318 | 0.000302 |
N | 296 | T296T | acT | acC | 1 | 1 | B.1.1.348 | 0.000796 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.378 | 0.007299 |
N | 296 | T296T | acT | acA | 1 | 1 | B.1.1.409 | 0.002833 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.429 | 0.004608 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.464 | 0.001473 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.500 | 0.02 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.507 | 0.008696 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.1.523 | 0.001563 |
N | 296 | T296S | aCt | aGt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
N | 296 | T296T | acT | acC | 1 | 1 | B.1.160 | 0.000031 |
N | 296 | T296T | acT | acG | 1 | 1 | B.1.160.16 | 0.000929 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.160.22 | 0.006757 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.160.27 | 0.015152 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
N | 296 | T296V | ACt | GTt | 1 | 1 | B.1.177.63 | 0.002703 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
N | 296 | T296del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.195 | 0.005025 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.241 | 0.000812 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.258.3 | 0.001675 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.323 | 0.020833 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.324 | 0.001605 |
N | 296 | T296N | aCt | aAt | 1 | 1 | B.1.36 | 0.000146 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.36.31 | 0.001751 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.400 | 0.000429 |
N | 296 | T296T | acT | acA | 1 | 1 | B.1.416 | 0.001269 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.416 | 0.001269 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.422 | 0.000812 |
N | 296 | T296T | acT | acC | 1 | 1 | B.1.429 | 0.000024 |
N | 296 | T296T | acT | acC | 1 | 1 | B.1.438.1 | 0.000107 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.459 | 0.004082 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.467 | 0.04 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.509 | 0.000866 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.551 | 0.00129 |
N | 296 | T296del | ACT | --- | 1 | 1 | B.1.560 | 0.00463 |
N | 296 | T296S | Act | Tct | 1 | 1 | B.1.561 | 0.000397 |
N | 296 | T296T | acT | acC | 1 | 1 | B.1.575 | 0.000303 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.577 | 0.000687 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.595 | 0.000261 |
N | 296 | T296N | aCt | aAt | 1 | 1 | B.1.596 | 0.000087 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
N | 296 | T296T | acT | acC | 1 | 1 | B.1.621 | 0.000089 |
N | 296 | T296del | ACT | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 296 | T296I | aCt | aTt | 1 | 1 | B.55 | 0.00295 |
N | 296 | T296S | Act | Tct | 1 | 1 | B.6 | 0.00091 |
N | 296 | T296I | aCt | aTt | 1 | 1 | C.36.3.1 | 0.002717 |
N | 296 | T296I | aCt | aTt | 1 | 1 | C.37.1 | 0.002618 |
N | 296 | T296I | aCt | aTt | 1 | 1 | N.5 | 0.001767 |
N | 296 | T296I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
N | 296 | T296I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
N | 296 | T296I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
N | 296 | T296T | acT | acA | 1 | 1 | P.1.7 | 0.000319 |
N | 296 | T296I | aCt | aTt | 1 | 1 | Q.8 | 0.000165 |
N | 296 | T296I | aCt | aTt | 1 | 1 | W.2 | 0.004831 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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