CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 292 | I292I | syn | atC | atT | 6560 | 6513 | 0.992835 | 29147-29149 | |
N | 292 | I292I | syn | atC | atA | 6560 | 47 | 0.00716463 | 29147-29149 | |
N | 292 | I292T | nonsyn | aTc | aCc | 4675 | 4520 | 0.966845 | 29147-29149 | |
N | 292 | I292T | nonsyn | aTC | aCT | 4675 | 155 | 0.0331551 | 29147-29149 | |
N | 292 | I292V | nonsyn | Atc | Gtc | 232 | 232 | 1 | 29147-29149 | |
N | 292 | I292N | nonsyn | aTc | aAc | 99 | 99 | 1 | 29147-29149 | |
N | 292 | I292L | nonsyn | Atc | Ctc | 46 | 46 | 1 | 29147-29149 | |
N | 292 | I292del | del | ATC | --- | 12 | 12 | 1 | 29147-29149 | |
N | 292 | I292M | nonsyn | atC | atG | 6 | 6 | 1 | 29147-29149 | |
N | 292 | I292S | nonsyn | aTc | aGc | 5 | 5 | 1 | 29147-29149 | |
N | 292 | I292F | nonsyn | Atc | Ttc | 2 | 2 | 1 | 29147-29149 | |
N | 292 | I292del1 | del | aTc | a-c | 1 | 1 | 1 | 29147-29149 | |
N | 292 | I292del2 | del | ATC | --N | 1 | 1 | 1 | 29147-29149 | |
N | 292 | I292P | nonsyn | ATC | CCA | 1 | 1 | 1 | 29147-29149 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 292 | I292I | atC | atT | 6513 | 6560 | All | 0.001246 |
N | 292 | I292I | atC | atA | 47 | 6560 | All | 0.000009 |
N | 292 | I292T | aTc | aCc | 4520 | 4675 | All | 0.000865 |
N | 292 | I292T | aTC | aCT | 155 | 4675 | All | 0.00003 |
N | 292 | I292T | aTc | aCc | 2353 | 2363 | B.1.1.33 | 0.99032 |
N | 292 | I292T | aTC | aCT | 10 | 2363 | B.1.1.33 | 0.004209 |
N | 292 | I292I | atC | atT | 2039 | 2040 | B.1.1.7 | 0.001825 |
N | 292 | I292I | atC | atA | 1 | 2040 | B.1.1.7 | 0.000001 |
N | 292 | I292T | aTc | aCc | 395 | 538 | N.5 | 0.69788 |
N | 292 | I292T | aTC | aCT | 143 | 538 | N.5 | 0.25265 |
N | 292 | I292I | atC | atT | 468 | 470 | AY.4 | 0.000728 |
N | 292 | I292I | atC | atA | 2 | 470 | AY.4 | 0.000003 |
N | 292 | I292I | atC | atT | 439 | 439 | P.1 | 0.006916 |
N | 292 | I292I | atC | atT | 351 | 351 | B.1.177.35 | 0.242571 |
N | 292 | I292T | aTc | aCc | 234 | 235 | N.4 | 0.995745 |
N | 292 | I292T | aTC | aCT | 1 | 235 | N.4 | 0.004255 |
N | 292 | I292V | Atc | Gtc | 232 | 232 | All | 0.000044 |
N | 292 | I292T | aTc | aCc | 229 | 229 | B.1.1 | 0.004154 |
N | 292 | I292I | atC | atT | 226 | 226 | B.1.1.294 | 0.286076 |
N | 292 | I292I | atC | atT | 217 | 217 | B.1.1.429 | 1 |
N | 292 | I292I | atC | atT | 193 | 193 | B.1.1 | 0.003501 |
N | 292 | I292T | aTc | aCc | 172 | 172 | N.3 | 1 |
N | 292 | I292T | aTc | aCc | 164 | 164 | N.9 | 0.97619 |
N | 292 | I292I | atC | atT | 148 | 153 | B.1 | 0.001356 |
N | 292 | I292I | atC | atA | 5 | 153 | B.1 | 0.000046 |
N | 292 | I292I | atC | atT | 148 | 151 | B.1.617.2 | 0.000557 |
N | 292 | I292I | atC | atA | 3 | 151 | B.1.617.2 | 0.000011 |
N | 292 | I292T | aTc | aCc | 140 | 140 | N.6 | 0.992908 |
N | 292 | I292I | atC | atT | 132 | 132 | B.1.1.236 | 0.910345 |
N | 292 | I292T | aTc | aCc | 127 | 127 | B.1.1.7 | 0.000114 |
N | 292 | I292I | atC | atT | 100 | 101 | AY.39 | 0.002471 |
N | 292 | I292I | atC | atA | 1 | 101 | AY.39 | 0.000025 |
N | 292 | I292N | aTc | aAc | 99 | 99 | All | 0.000019 |
N | 292 | I292T | aTc | aCc | 96 | 96 | B.1.160.16 | 0.089219 |
N | 292 | I292I | atC | atT | 91 | 91 | B.1.2 | 0.000801 |
N | 292 | I292I | atC | atT | 83 | 85 | AY.44 | 0.000505 |
N | 292 | I292I | atC | atA | 2 | 85 | AY.44 | 0.000012 |
N | 292 | I292T | aTc | aCc | 83 | 84 | B.1 | 0.00076 |
N | 292 | I292T | aTC | aCT | 1 | 84 | B.1 | 0.000009 |
N | 292 | I292I | atC | atT | 82 | 82 | AY.25 | 0.000493 |
N | 292 | I292I | atC | atT | 82 | 82 | B.1.126 | 0.104592 |
N | 292 | I292I | atC | atT | 80 | 80 | B.1.351 | 0.002378 |
N | 292 | I292I | atC | atT | 76 | 77 | AY.3 | 0.000756 |
N | 292 | I292I | atC | atA | 1 | 77 | AY.3 | 0.00001 |
N | 292 | I292I | atC | atT | 71 | 71 | AY.103 | 0.000441 |
N | 292 | I292I | atC | atT | 68 | 68 | B.1.240 | 0.014658 |
N | 292 | I292I | atC | atT | 63 | 63 | B.1.1.432 | 0.079747 |
N | 292 | I292I | atC | atT | 58 | 58 | B.1.1.519 | 0.002303 |
N | 292 | I292I | atC | atT | 53 | 53 | B.1.177 | 0.000698 |
N | 292 | I292I | atC | atT | 52 | 52 | B.1.429 | 0.001224 |
N | 292 | I292I | atC | atT | 49 | 50 | AY.26 | 0.001387 |
N | 292 | I292I | atC | atA | 1 | 50 | AY.26 | 0.000028 |
N | 292 | I292I | atC | atT | 50 | 50 | AY.43 | 0.000222 |
N | 292 | I292L | Atc | Ctc | 46 | 46 | All | 0.000009 |
N | 292 | I292V | Atc | Gtc | 45 | 45 | AY.43 | 0.000199 |
N | 292 | I292I | atC | atT | 43 | 43 | B.1.1.28 | 0.013383 |
N | 292 | I292I | atC | atT | 43 | 43 | M.1 | 1 |
N | 292 | I292T | aTc | aCc | 42 | 42 | N.1 | 0.711864 |
N | 292 | I292I | atC | atT | 41 | 41 | B.1.160 | 0.001279 |
N | 292 | I292V | Atc | Gtc | 39 | 39 | P.1 | 0.000614 |
N | 292 | I292I | atC | atT | 35 | 35 | R.1 | 0.00315 |
N | 292 | I292T | aTc | aCc | 34 | 34 | N.10 | 1 |
N | 292 | I292T | aTc | aCc | 34 | 34 | N.7 | 1 |
N | 292 | I292N | aTc | aAc | 32 | 32 | AY.4 | 0.00005 |
N | 292 | I292T | aTc | aCc | 32 | 32 | N.8 | 1 |
N | 292 | I292T | aTc | aCc | 31 | 31 | AY.25 | 0.000186 |
N | 292 | I292I | atC | atT | 31 | 31 | C.37 | 0.003598 |
N | 292 | I292I | atC | atT | 29 | 29 | B.1.1.192 | 0.066975 |
N | 292 | I292I | atC | atT | 29 | 29 | B.1.1.214 | 0.001608 |
N | 292 | I292T | aTc | aCc | 26 | 26 | AK.1 | 0.329114 |
N | 292 | I292I | atC | atT | 26 | 26 | AY.3.1 | 0.002217 |
N | 292 | I292T | aTc | aCc | 26 | 26 | AY.4 | 0.00004 |
N | 292 | I292I | atC | atT | 26 | 26 | B.1.177.81 | 0.004922 |
N | 292 | I292T | aTc | aCc | 26 | 26 | N.2 | 1 |
N | 292 | I292I | atC | atT | 24 | 24 | AY.29 | 0.000379 |
N | 292 | I292I | atC | atT | 22 | 22 | AY.100 | 0.001012 |
N | 292 | I292V | Atc | Gtc | 22 | 22 | AY.4 | 0.000034 |
N | 292 | I292N | aTc | aAc | 22 | 22 | AY.4.5 | 0.002365 |
N | 292 | I292I | atC | atT | 21 | 21 | AY.119 | 0.000741 |
N | 292 | I292N | aTc | aAc | 21 | 21 | B.1.177 | 0.000277 |
N | 292 | I292I | atC | atT | 21 | 21 | B.1.311 | 0.005766 |
N | 292 | I292I | atC | atT | 14 | 21 | B.1.36 | 0.002043 |
N | 292 | I292I | atC | atA | 7 | 21 | B.1.36 | 0.001021 |
N | 292 | I292I | atC | atT | 19 | 19 | AY.5 | 0.000392 |
N | 292 | I292T | aTc | aCc | 19 | 19 | B.1.139 | 0.01393 |
N | 292 | I292T | aTc | aCc | 19 | 19 | B.1.177.44 | 0.00986 |
N | 292 | I292T | aTc | aCc | 18 | 18 | AY.44 | 0.00011 |
N | 292 | I292T | aTc | aCc | 17 | 17 | B.1.1.519 | 0.000675 |
N | 292 | I292I | atC | atT | 17 | 17 | B.1.525 | 0.001924 |
N | 292 | I292I | atC | atT | 16 | 16 | AY.117 | 0.001352 |
N | 292 | I292I | atC | atT | 16 | 16 | B.1.1.282 | 0.186047 |
N | 292 | I292I | atC | atT | 16 | 16 | B.1.1.63 | 0.006173 |
N | 292 | I292I | atC | atA | 13 | 15 | AY.47 | 0.000404 |
N | 292 | I292I | atC | atT | 2 | 15 | AY.47 | 0.000062 |
N | 292 | I292I | atC | atT | 15 | 15 | B.1.509 | 0.012987 |
N | 292 | I292I | atC | atT | 13 | 13 | AY.102 | 0.000345 |
N | 292 | I292L | Atc | Ctc | 13 | 13 | AY.25 | 0.000078 |
N | 292 | I292I | atC | atT | 13 | 13 | B.1.1.434 | 0.004531 |
N | 292 | I292V | Atc | Gtc | 13 | 13 | B.1.1.7 | 0.000012 |
N | 292 | I292I | atC | atT | 13 | 13 | B.1.526 | 0.000306 |
N | 292 | I292del | ATC | --- | 12 | 12 | All | 0.000002 |
N | 292 | I292I | atC | atT | 12 | 12 | AY.4.2 | 0.00026 |
N | 292 | I292I | atC | atT | 11 | 11 | AY.46.4 | 0.00181 |
N | 292 | I292V | Atc | Gtc | 11 | 11 | AY.46.6 | 0.000794 |
N | 292 | I292I | atC | atT | 11 | 11 | B.1.1.244 | 0.169231 |
N | 292 | I292I | atC | atT | 11 | 11 | B.1.617.1 | 0.001419 |
N | 292 | I292V | Atc | Gtc | 11 | 11 | B.1.617.2 | 0.000041 |
N | 292 | I292I | atC | atT | 10 | 10 | AY.120 | 0.000372 |
N | 292 | I292V | Atc | Gtc | 10 | 10 | B.1.1.519 | 0.000397 |
N | 292 | I292I | atC | atT | 10 | 10 | B.1.177.54 | 0.006064 |
N | 292 | I292T | aTc | aCc | 10 | 10 | B.1.2 | 0.000088 |
N | 292 | I292I | atC | atT | 10 | 10 | B.1.258 | 0.000665 |
N | 292 | I292I | atC | atT | 10 | 10 | B.1.438.1 | 0.001073 |
N | 292 | I292T | aTc | aCc | 10 | 10 | B.1.617.2 | 0.000038 |
N | 292 | I292T | aTc | aCc | 9 | 9 | AY.3 | 0.00009 |
N | 292 | I292I | atC | atT | 8 | 9 | AY.33 | 0.000534 |
N | 292 | I292I | atC | atA | 1 | 9 | AY.33 | 0.000067 |
N | 292 | I292V | Atc | Gtc | 9 | 9 | B.1 | 0.000082 |
N | 292 | I292I | atC | atT | 9 | 9 | B.1.1.133 | 0.076271 |
N | 292 | I292I | atC | atT | 9 | 9 | B.1.1.258 | 0.029316 |
N | 292 | I292T | aTc | aCc | 9 | 9 | B.1.160 | 0.000281 |
N | 292 | I292T | aTc | aCc | 9 | 9 | B.1.351 | 0.000268 |
N | 292 | I292I | atC | atT | 9 | 9 | P.1.2 | 0.010405 |
N | 292 | I292I | atC | atT | 8 | 8 | AY.61 | 0.000838 |
N | 292 | I292I | atC | atT | 8 | 8 | AY.69 | 0.001493 |
N | 292 | I292I | atC | atT | 8 | 8 | B.1.1.291 | 0.005939 |
N | 292 | I292I | atC | atT | 8 | 8 | B.1.1.70 | 0.002729 |
N | 292 | I292I | atC | atT | 8 | 8 | B.1.160.14 | 0.016949 |
N | 292 | I292T | aTc | aCc | 8 | 8 | B.1.177.75 | 0.008325 |
N | 292 | I292V | Atc | Gtc | 8 | 8 | B.1.221 | 0.000568 |
N | 292 | I292T | aTc | aCc | 8 | 8 | B.1.429 | 0.000188 |
N | 292 | I292I | atC | atT | 8 | 8 | Q.8 | 0.001319 |
N | 292 | I292T | aTc | aCc | 7 | 7 | AY.102 | 0.000186 |
N | 292 | I292L | Atc | Ctc | 7 | 7 | AY.120 | 0.00026 |
N | 292 | I292I | atC | atT | 7 | 7 | AY.45 | 0.000852 |
N | 292 | I292I | atC | atT | 6 | 7 | AY.75 | 0.000336 |
N | 292 | I292I | atC | atA | 1 | 7 | AY.75 | 0.000056 |
N | 292 | I292I | atC | atT | 7 | 7 | B.1.1.216 | 0.006233 |
N | 292 | I292T | aTc | aCc | 7 | 7 | B.1.1.393 | 0.777778 |
N | 292 | I292T | aTc | aCc | 7 | 7 | B.1.177 | 0.000092 |
N | 292 | I292V | Atc | Gtc | 7 | 7 | B.1.595 | 0.001827 |
N | 292 | I292T | aTc | aCc | 7 | 7 | B.1.609 | 0.003356 |
N | 292 | I292L | Atc | Ctc | 7 | 7 | B.1.617.2 | 0.000026 |
N | 292 | I292I | atC | atT | 6 | 7 | B.1.621 | 0.000531 |
N | 292 | I292I | atC | atA | 1 | 7 | B.1.621 | 0.000089 |
N | 292 | I292T | aTc | aCc | 7 | 7 | P.1 | 0.00011 |
N | 292 | I292M | atC | atG | 6 | 6 | All | 0.000001 |
N | 292 | I292I | atC | atT | 6 | 6 | AY.20 | 0.000233 |
N | 292 | I292T | aTc | aCc | 6 | 6 | AY.43 | 0.000027 |
N | 292 | I292I | atC | atT | 6 | 6 | AY.46 | 0.000624 |
N | 292 | I292V | Atc | Gtc | 6 | 6 | AY.69 | 0.00112 |
N | 292 | I292T | aTc | aCc | 6 | 6 | AZ.5 | 0.021053 |
N | 292 | I292T | aTc | aCc | 6 | 6 | B.1.1.28 | 0.001867 |
N | 292 | I292I | atC | atT | 6 | 6 | B.1.1.317 | 0.00247 |
N | 292 | I292I | atC | atT | 6 | 6 | B.1.1.39 | 0.003058 |
N | 292 | I292I | atC | atT | 6 | 6 | B.1.1.442 | 0.111111 |
N | 292 | I292I | atC | atT | 6 | 6 | B.1.416 | 0.007614 |
N | 292 | I292I | atC | atT | 6 | 6 | B.1.427 | 0.000303 |
N | 292 | I292I | atC | atT | 6 | 6 | P.1.14 | 0.000287 |
N | 292 | I292I | atC | atT | 6 | 6 | Q.1 | 0.000758 |
N | 292 | I292I | atC | atT | 5 | 5 | A | 0.001935 |
N | 292 | I292S | aTc | aGc | 5 | 5 | All | 0.000001 |
N | 292 | I292V | Atc | Gtc | 5 | 5 | AY.103 | 0.000031 |
N | 292 | I292I | atC | atT | 5 | 5 | AY.114 | 0.001156 |
N | 292 | I292T | aTc | aCc | 5 | 5 | AY.34 | 0.000485 |
N | 292 | I292V | Atc | Gtc | 5 | 5 | AY.47 | 0.000156 |
N | 292 | I292N | aTc | aAc | 5 | 5 | AY.9 | 0.000338 |
N | 292 | I292I | atC | atT | 5 | 5 | AY.9 | 0.000338 |
N | 292 | I292I | atC | atT | 5 | 5 | AY.9.1 | 0.000419 |
N | 292 | I292I | atC | atT | 5 | 5 | B.1.1.222 | 0.00102 |
N | 292 | I292I | atC | atT | 5 | 5 | B.1.1.306 | 0.002192 |
N | 292 | I292I | atC | atT | 5 | 5 | B.1.36.29 | 0.002587 |
N | 292 | I292I | atC | atT | 5 | 5 | P.1.12 | 0.00242 |
N | 292 | I292V | Atc | Gtc | 4 | 4 | AY.102 | 0.000106 |
N | 292 | I292M | atC | atG | 4 | 4 | AY.103 | 0.000025 |
N | 292 | I292I | atC | atT | 4 | 4 | AY.121 | 0.000541 |
N | 292 | I292V | Atc | Gtc | 4 | 4 | AY.25 | 0.000024 |
N | 292 | I292I | atC | atT | 4 | 4 | AY.46.3 | 0.003735 |
N | 292 | I292I | atC | atT | 4 | 4 | AY.52 | 0.003257 |
N | 292 | I292I | atC | atT | 4 | 4 | AY.6 | 0.000165 |
N | 292 | I292T | aTc | aCc | 4 | 4 | AY.75 | 0.000224 |
N | 292 | I292I | atC | atT | 4 | 4 | AY.8 | 0.002424 |
N | 292 | I292N | aTc | aAc | 4 | 4 | AY.8 | 0.002424 |
N | 292 | I292I | atC | atT | 4 | 4 | AY.98 | 0.000316 |
N | 292 | I292I | atC | atT | 4 | 4 | AY.99.2 | 0.000369 |
N | 292 | I292V | Atc | Gtc | 4 | 4 | B.1.1 | 0.000073 |
N | 292 | I292I | atC | atT | 4 | 4 | B.1.1.189 | 0.006051 |
N | 292 | I292I | atC | atT | 4 | 4 | B.1.1.263 | 0.006231 |
N | 292 | I292I | atC | atT | 4 | 4 | B.1.1.351 | 0.011173 |
N | 292 | I292T | aTc | aCc | 4 | 4 | B.1.221 | 0.000284 |
N | 292 | I292I | atC | atT | 4 | 4 | B.1.234 | 0.000528 |
N | 292 | I292I | atC | atT | 4 | 4 | B.1.36.19 | 0.037037 |
N | 292 | I292I | atC | atT | 4 | 4 | B.1.621.1 | 0.002023 |
N | 292 | I292I | atC | atT | 4 | 4 | D.2 | 0.0003 |
N | 292 | I292I | atC | atT | 4 | 4 | P.2 | 0.000747 |
N | 292 | I292I | atC | atT | 3 | 3 | A.18 | 0.15 |
N | 292 | I292I | atC | atT | 3 | 3 | AY.101 | 0.001471 |
N | 292 | I292V | Atc | Gtc | 3 | 3 | AY.120 | 0.000112 |
N | 292 | I292T | aTc | aCc | 3 | 3 | AY.20 | 0.000117 |
N | 292 | I292I | atC | atT | 2 | 3 | AY.23 | 0.000139 |
N | 292 | I292I | atC | atA | 1 | 3 | AY.23 | 0.00007 |
N | 292 | I292V | Atc | Gtc | 3 | 3 | AY.26 | 0.000085 |
N | 292 | I292I | atC | atT | 3 | 3 | AY.27 | 0.000194 |
N | 292 | I292I | atC | atT | 3 | 3 | AY.39.1 | 0.000119 |
N | 292 | I292I | atC | atT | 3 | 3 | AY.40 | 0.002893 |
N | 292 | I292T | aTc | aCc | 3 | 3 | AY.42 | 0.000121 |
N | 292 | I292del | ATC | --- | 3 | 3 | AY.43 | 0.000013 |
N | 292 | I292V | Atc | Gtc | 3 | 3 | AY.5 | 0.000062 |
N | 292 | I292I | atC | atT | 3 | 3 | AY.75.1 | 0.000541 |
N | 292 | I292I | atC | atT | 3 | 3 | AY.91 | 0.002191 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.1.220 | 0.005576 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.1.272 | 0.015625 |
N | 292 | I292T | aTc | aCc | 3 | 3 | B.1.1.303 | 0.008287 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.1.318 | 0.000905 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.1.348 | 0.002389 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.111 | 0.003525 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.177.46 | 0.002755 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.177.60 | 0.000655 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.221 | 0.000213 |
N | 292 | I292I | atC | atA | 3 | 3 | B.1.456 | 0.009804 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.516 | 0.005871 |
N | 292 | I292I | atC | atT | 3 | 3 | B.1.637 | 0.000219 |
N | 292 | I292I | atC | atT | 3 | 3 | P.1.1 | 0.000953 |
N | 292 | I292I | atC | atT | 3 | 3 | P.1.10 | 0.000808 |
N | 292 | I292I | atC | atT | 3 | 3 | P.1.15 | 0.000697 |
N | 292 | I292T | aTc | aCc | 2 | 2 | 0.111111 | |
N | 292 | I292I | atC | atT | 2 | 2 | A.1 | 0.000564 |
N | 292 | I292F | Atc | Ttc | 2 | 2 | All | 0 |
N | 292 | I292T | aTc | aCc | 2 | 2 | AY.119 | 0.000071 |
N | 292 | I292N | aTc | aAc | 2 | 2 | AY.120 | 0.000074 |
N | 292 | I292L | Atc | Ctc | 2 | 2 | AY.120.2 | 0.002571 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.28 | 0.003781 |
N | 292 | I292T | aTc | aCc | 2 | 2 | AY.29 | 0.000032 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.32 | 0.001065 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.37 | 0.000632 |
N | 292 | I292V | Atc | Gtc | 2 | 2 | AY.39 | 0.000049 |
N | 292 | I292T | aTc | aCc | 2 | 2 | AY.39 | 0.000049 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.42 | 0.00008 |
N | 292 | I292T | aTc | aCc | 2 | 2 | AY.46.2 | 0.001271 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.46.6 | 0.000144 |
N | 292 | I292T | aTc | aCc | 2 | 2 | AY.47 | 0.000062 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.55 | 0.001835 |
N | 292 | I292N | aTc | aAc | 2 | 2 | AY.58 | 0.001815 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.59 | 0.001059 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.70 | 0.000417 |
N | 292 | I292I | atC | atT | 2 | 2 | AY.99 | 0.002099 |
N | 292 | I292L | Atc | Ctc | 2 | 2 | B.1.1 | 0.000036 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.1.128 | 0.014184 |
N | 292 | I292L | Atc | Ctc | 2 | 2 | B.1.1.170 | 0.002494 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.1.174 | 0.006757 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.1.243 | 0.008163 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.1.269 | 0.002706 |
N | 292 | I292T | aTc | aCc | 2 | 2 | B.1.1.318 | 0.000604 |
N | 292 | I292S | aTc | aGc | 2 | 2 | B.1.1.318 | 0.000604 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.1.329 | 0.007692 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.1.521 | 0.010695 |
N | 292 | I292L | Atc | Ctc | 2 | 2 | B.1.1.7 | 0.000002 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.110.3 | 0.001437 |
N | 292 | I292V | Atc | Gtc | 2 | 2 | B.1.160.28 | 0.005848 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.177.42 | 0.001789 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.177.7 | 0.00033 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.177.75 | 0.002081 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.214.3 | 0.014286 |
N | 292 | I292T | aTc | aCc | 2 | 2 | B.1.36.18 | 0.00084 |
N | 292 | I292I | atC | atA | 1 | 2 | B.1.36.18 | 0.00042 |
N | 292 | I292I | atC | atT | 1 | 2 | B.1.36.18 | 0.00042 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.36.22 | 0.002415 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.36.8 | 0.002 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.470 | 0.002809 |
N | 292 | I292T | aTc | aCc | 2 | 2 | B.1.499 | 0.002101 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.499 | 0.002101 |
N | 292 | I292T | aTc | aCc | 2 | 2 | B.1.526 | 0.000047 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.541 | 0.00885 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.564 | 0.000852 |
N | 292 | I292T | aTc | aCc | 2 | 2 | B.1.596 | 0.000174 |
N | 292 | I292S | aTc | aGc | 2 | 2 | B.1.617.2 | 0.000008 |
N | 292 | I292I | atC | atT | 2 | 2 | B.1.619 | 0.001742 |
N | 292 | I292T | aTc | aCc | 2 | 2 | B.4 | 0.004415 |
N | 292 | I292I | atC | atT | 2 | 2 | P.1.7 | 0.000639 |
N | 292 | I292I | atC | atT | 2 | 2 | S.1 | 0.009901 |
N | 292 | I292I | atC | atT | 1 | 1 | A.2 | 0.000662 |
N | 292 | I292T | aTc | aCc | 1 | 1 | A.2 | 0.000662 |
N | 292 | I292I | atC | atA | 1 | 1 | A.27 | 0.001656 |
N | 292 | I292I | atC | atT | 1 | 1 | AD.2 | 0.000219 |
N | 292 | I292P | ATC | CCA | 1 | 1 | All | 0 |
N | 292 | I292del1 | aTc | a-c | 1 | 1 | All | 0 |
N | 292 | I292del2 | ATC | --N | 1 | 1 | All | 0 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.103 | 0.000006 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.105 | 0.000643 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.106 | 0.000335 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.109 | 0.00074 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | AY.113 | 0.000142 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.113 | 0.000142 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.117 | 0.000085 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.118 | 0.000063 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.12 | 0.000316 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.13 | 0.000161 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.14 | 0.000088 |
N | 292 | I292N | aTc | aAc | 1 | 1 | AY.17 | 0.008197 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.2 | 0.000356 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | AY.20 | 0.000039 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.23 | 0.00007 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | AY.23 | 0.00007 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | AY.23 | 0.00007 |
N | 292 | I292del | ATC | --- | 1 | 1 | AY.25 | 0.000006 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.26 | 0.000028 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | AY.28 | 0.00189 |
N | 292 | I292N | aTc | aAc | 1 | 1 | AY.3 | 0.00001 |
N | 292 | I292M | atC | atG | 1 | 1 | AY.30 | 0.000396 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.31 | 0.018519 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.35 | 0.000233 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | AY.39.1 | 0.00004 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.39.1 | 0.00004 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | AY.4 | 0.000002 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | AY.4.2 | 0.000022 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.4.5 | 0.000107 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | AY.42 | 0.00004 |
N | 292 | I292S | aTc | aGc | 1 | 1 | AY.43 | 0.000004 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | AY.43 | 0.000004 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | AY.44 | 0.000006 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.46.1 | 0.001027 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.46.5 | 0.000198 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.5.3 | 0.000337 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.5.4 | 0.000277 |
N | 292 | I292M | atC | atG | 1 | 1 | AY.51 | 0.000909 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | AY.54 | 0.000095 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | AY.6 | 0.000041 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.64 | 0.000595 |
N | 292 | I292del | ATC | --- | 1 | 1 | AY.67 | 0.000464 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.67 | 0.000464 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.68 | 0.000274 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.7.1 | 0.000113 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.73 | 0.000665 |
N | 292 | I292del | ATC | --- | 1 | 1 | AY.75 | 0.000056 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.77 | 0.001127 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.79 | 0.001211 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.81 | 0.001992 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.86 | 0.00083 |
N | 292 | I292N | aTc | aAc | 1 | 1 | AY.87 | 0.000833 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.88 | 0.000884 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.9.2 | 0.000037 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.9.2 | 0.000037 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.93 | 0.000273 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.93 | 0.000273 |
N | 292 | I292I | atC | atT | 1 | 1 | AY.95 | 0.000761 |
N | 292 | I292N | aTc | aAc | 1 | 1 | AY.96 | 0.002075 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.98.1 | 0.000048 |
N | 292 | I292T | aTc | aCc | 1 | 1 | AY.99.2 | 0.000092 |
N | 292 | I292del | ATC | --- | 1 | 1 | B.1 | 0.000009 |
N | 292 | I292N | aTc | aAc | 1 | 1 | B.1 | 0.000009 |
N | 292 | I292del | ATC | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.10 | 0.001115 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.117 | 0.009709 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.121 | 0.002427 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.194 | 0.00495 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.198 | 0.001468 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.1.27 | 0.00565 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.284 | 0.000107 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | B.1.1.306 | 0.000438 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.312 | 0.001912 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.1.332 | 0.03125 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.1.356 | 0.008547 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.1.362 | 0.005618 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.372 | 0.000689 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.397 | 0.002252 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.413 | 0.006897 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.416 | 0.000905 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.417 | 0.002703 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | B.1.1.458 | 0.041667 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.523 | 0.001563 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.526 | 0.003546 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.1.53 | 0.013699 |
N | 292 | I292del2 | ATC | --N | 1 | 1 | B.1.1.7 | 0.000001 |
N | 292 | I292N | aTc | aAc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.1.70 | 0.000341 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.104 | 0.00369 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.146 | 0.004237 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.160.21 | 0.020408 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.170 | 0.00431 |
N | 292 | I292F | Atc | Ttc | 1 | 1 | B.1.177 | 0.000013 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.177.23 | 0.003236 |
N | 292 | I292I | atC | atA | 1 | 1 | B.1.177.4 | 0.000211 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | B.1.177.51 | 0.004566 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.177.51 | 0.004566 |
N | 292 | I292P | ATC | CCA | 1 | 1 | B.1.177.63 | 0.002703 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | B.1.177.7 | 0.000165 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.177.73 | 0.000566 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.177.73 | 0.000566 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.177.77 | 0.000726 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.177.83 | 0.001481 |
N | 292 | I292del | ATC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.177.86 | 0.000183 |
N | 292 | I292N | aTc | aAc | 1 | 1 | B.1.177.87 | 0.000728 |
N | 292 | I292del | ATC | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 292 | I292del1 | aTc | a-c | 1 | 1 | B.1.2 | 0.000009 |
N | 292 | I292N | aTc | aAc | 1 | 1 | B.1.2 | 0.000009 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | B.1.2 | 0.000009 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.201 | 0.005682 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.210 | 0.002132 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.214 | 0.003663 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.214.1 | 0.02 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | B.1.214.2 | 0.0006 |
N | 292 | I292del | ATC | --- | 1 | 1 | B.1.221 | 0.000071 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | B.1.234 | 0.000132 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.258 | 0.000067 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.258.12 | 0.007874 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.319 | 0.003049 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.324 | 0.001605 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.344 | 0.008197 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | B.1.351 | 0.00003 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.351.2 | 0.000303 |
N | 292 | I292F | Atc | Ttc | 1 | 1 | B.1.36.36 | 0.000602 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.361 | 0.001289 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.362 | 0.001541 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.362.1 | 0.066667 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.380 | 0.006623 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.389 | 0.001002 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.404 | 0.001302 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.426 | 0.001009 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.428 | 0.00102 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | B.1.429 | 0.000024 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | B.1.438.1 | 0.000107 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.459 | 0.004082 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.466.2 | 0.000391 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.466.2 | 0.000391 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.471 | 0.002732 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.473 | 0.019231 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.479 | 0.038462 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.524 | 0.001406 |
N | 292 | I292N | aTc | aAc | 1 | 1 | B.1.525 | 0.000113 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | B.1.526 | 0.000024 |
N | 292 | I292I | atC | atA | 1 | 1 | B.1.533 | 0.009615 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | B.1.540 | 0.009709 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.551 | 0.00129 |
N | 292 | I292del | ATC | --- | 1 | 1 | B.1.560 | 0.00463 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.561 | 0.000397 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.596 | 0.000087 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.599 | 0.00365 |
N | 292 | I292N | aTc | aAc | 1 | 1 | B.1.599 | 0.00365 |
N | 292 | I292N | aTc | aAc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.621 | 0.000089 |
N | 292 | I292I | atC | atT | 1 | 1 | B.1.628 | 0.000352 |
N | 292 | I292T | aTc | aCc | 1 | 1 | B.1.91 | 0.002075 |
N | 292 | I292I | atC | atT | 1 | 1 | B.40 | 0.000364 |
N | 292 | I292T | aTc | aCc | 1 | 1 | C.1.2 | 0.004255 |
N | 292 | I292I | atC | atT | 1 | 1 | C.2 | 0.016129 |
N | 292 | I292T | aTc | aCc | 1 | 1 | C.27 | 0.018519 |
N | 292 | I292I | atC | atT | 1 | 1 | C.36 | 0.000911 |
N | 292 | I292T | aTc | aCc | 1 | 1 | C.37 | 0.000116 |
N | 292 | I292T | aTc | aCc | 1 | 1 | C.39 | 0.018868 |
N | 292 | I292L | Atc | Ctc | 1 | 1 | D.2 | 0.000075 |
N | 292 | I292T | aTc | aCc | 1 | 1 | P.1.12 | 0.000484 |
N | 292 | I292T | aTc | aCc | 1 | 1 | P.1.15 | 0.000232 |
N | 292 | I292T | aTc | aCc | 1 | 1 | P.1.7 | 0.000319 |
N | 292 | I292T | aTc | aCc | 1 | 1 | P.2 | 0.000187 |
N | 292 | I292I | atC | atT | 1 | 1 | P.3 | 0.001595 |
N | 292 | I292I | atC | atT | 1 | 1 | Q.3 | 0.000145 |
N | 292 | I292V | Atc | Gtc | 1 | 1 | R.1 | 0.00009 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|