CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 291 & Codon = Tta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N291L291LsynCtaTta1076398520.91535829144-29146

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N291L291LCtaTta985210763All0.001884
N291L291LCtaTta25902590B.1.1.630.999228
N291L291LCtaTta13561376B.1.1.70.001214
N291L291LCtaTta11801299AY.40.001837
N291L291LCtaTta712795B.1.617.20.002681
N291L291LCtaTta2573AY.740.000231
N291L291LCtaTta373376AY.430.001653
N291L291LCtaTta288290B.10.002638
N291L291LCtaTta203203B.1.10.003683
N291L291LCtaTta181195B.1.20.001594
N291L291LCtaTta156156B.1.1.3890.945455
N291L291LCtaTta106106AY.4.20.002299
N291L291LCtaTta100100B.1.5260.00235
N291L291LCtaTta9999B.1.5950.025835
N291L291LCtaTta9194AY.250.000547
N291L291LCtaTta9194AY.390.002249
N291L291LCtaTta9292AY.30.000915
N291L291LCtaTta8989AY.540.008486
N291L291LCtaTta8589P.10.001339
N291L291LCtaTta8586B.1.1600.002651
N291L291LCtaTta8585B.1.1.3220.745614
N291L291LCtaTta8183AY.440.000493
N291L291LCtaTta7380AY.1030.000453
N291L291LCtaTta7980B.1.1770.00104
N291L291LCtaTta4164AY.1020.001087
N291L291LCtaTta4848B.1.4270.002424
N291L291LCtaTta4545B.1.4290.001059
N291L291LCtaTta4142AY.50.000847
N291L291LCtaTta4242B.1.177.440.021796
N291L291LCtaTta3636AY.470.00112
N291L291LCtaTta3233AY.290.000505
N291L291LCtaTta3131AY.120.10.009952
N291L291LCtaTta3131AY.7.10.003494
N291L291LCtaTta3030B.1.1390.021994
N291L291LCtaTta3030B.1.5250.003395
N291L291LCtaTta2929AY.420.001167
N291L291LCtaTta2327AY.260.000651
N291L291LCtaTta2727AY.330.001803
N291L291LCtaTta2727B.1.6040.465517
N291L291LCtaTta2626AY.90.001757
N291L291LCtaTta2323AY.200.000894
N291L291LCtaTta2323B.1.1.2910.017075
N291L291LCtaTta2121B.1.2580.001397
N291L291LCtaTta2121B.1.3510.000624
N291L291LCtaTta1821C.370.002089
N291L291LCtaTta2020AY.1140.004622
N291L291LCtaTta1920AY.460.001978
N291L291LCtaTta1819B.1.1.5190.000715
N291L291LCtaTta1818AY.98.10.000872
N291L291LCtaTta1818B.1.3700.144
N291L291LCtaTta1818B.1.5610.007146
N291L291LCtaTta1616B.1.6090.00767
N291L291LCtaTta1515AY.60.000617
N291L291LCtaTta1414AY.270.000906
N291L291LCtaTta1414R.10.00126
N291L291LCtaTta1313AY.1070.006058
N291L291LCtaTta313AY.240.001293
N291L291LCtaTta1213AY.980.000948
N291L291LCtaTta1313B.1.177.860.002385
N291L291LCtaTta1313B.1.3690.003708
N291L291LCtaTta1313B.1.4280.013265
N291L291LCtaTta1112AY.1190.000388
N291L291LCtaTta1212AY.750.000672
N291L291LCtaTta1212B.1.177.40.002533
N291L291LCtaTta211AY.1100.000225
N291L291LCtaTta1111AY.1200.000409
N291L291LCtaTta811AY.450.000973
N291L291LCtaTta1111B.1.438.10.00118
N291L291LCtaTta1010AY.1170.000845
N291L291LCtaTta1010AY.1180.000626
N291L291LCtaTta1010B.1.1620.050251
N291L291LCtaTta1010B.1.177.80.007524
N291L291LCtaTta1010B.1.6210.000885
N291L291LCtaTta1010P.20.001866
N291L291LCtaTta99AY.130.001449
N291L291LCtaTta99AY.9.10.000754
N291L291LCtaTta89AY.99.20.000737
N291L291LCtaTta99B.1.1.2140.000499
N291L291LCtaTta99B.1.1.280.002801
N291L291LCtaTta99B.1.1.2940.011392
N291L291LCtaTta99B.1.177.210.000688
N291L291LCtaTta99B.1.258.170.000936
N291L291LCtaTta99B.550.026549
N291L291LCtaTta88AY.39.10.000317
N291L291LCtaTta88AY.840.0035
N291L291LCtaTta88B.1.1.3160.007401
N291L291LCtaTta88B.1.1.5230.0125
N291L291LCtaTta88B.1.2320.004299
N291L291LCtaTta88Q.10.001011
N291L291LCtaTta77AY.610.000733
N291L291LCtaTta77AY.710.003325
N291L291LCtaTta77AY.75.10.001262
N291L291LCtaTta77B.1.1.2160.006233
N291L291LCtaTta77B.1.177.500.032864
N291L291LCtaTta77B.1.6370.000512
N291L291LCtaTta66AY.1000.000276
N291L291LCtaTta66AY.230.000418
N291L291LCtaTta66AY.46.60.000433
N291L291LCtaTta56B0.000639
N291L291LCtaTta66B.1.1.4200.006036
N291L291LCtaTta66B.1.1.4620.051724
N291L291LCtaTta66B.1.177.810.001136
N291L291LCtaTta66B.1.5960.000523
N291L291LCtaTta56B.1.617.10.000645
N291L291LCtaTta66C.36.30.003403
N291L291LCtaTta66N.90.035714
N291L291LCtaTta55A.2.50.002495
N291L291LCtaTta55AY.1110.000916
N291L291LCtaTta45AY.1210.000541
N291L291LCtaTta55AY.29.10.001103
N291L291LCtaTta55AY.360.000741
N291L291LCtaTta55AY.46.50.000992
N291L291LCtaTta55AY.5.30.001687
N291L291LCtaTta55AY.70.00098
N291L291LCtaTta55B.1.1.2530.012531
N291L291LCtaTta55B.1.1.3170.002058
N291L291LCtaTta55B.1.1.3180.001509
N291L291LCtaTta55B.1.177.730.002831
N291L291LCtaTta55B.1.360.00073
N291L291LCtaTta55B.1.5170.002135
N291L291LCtaTta55B.400.001821
N291L291LCtaTta55C.140.021645
N291L291LCtaTta55P.1.70.001596
N291L291LCtaTta55Q.80.000825
N291L291LCtaTta440.222222
N291L291LCtaTta44AY.16.10.00188
N291L291LCtaTta44AY.340.000388
N291L291LCtaTta44AY.46.40.000658
N291L291LCtaTta44AY.580.00363
N291L291LCtaTta44AY.720.005442
N291L291LCtaTta44AY.920.001149
N291L291LCtaTta44B.1.1.5170.027211
N291L291LCtaTta44B.1.1.560.071429
N291L291LCtaTta44B.1.1.830.01084
N291L291LCtaTta44B.1.177.90.005326
N291L291LCtaTta44B.1.2210.000284
N291L291LCtaTta44B.1.2430.000278
N291L291LCtaTta44B.1.3610.005155
N291L291LCtaTta44C.360.003643
N291L291LCtaTta44D.20.0003
N291L291LCtaTta33AY.1060.001005
N291L291LCtaTta33AY.3.10.000256
N291L291LCtaTta33AY.4.50.000322
N291L291LCtaTta33AY.46.10.00308
N291L291LCtaTta33AY.480.001395
N291L291LCtaTta33AY.600.002814
N291L291LCtaTta33AY.670.001393
N291L291LCtaTta33AY.780.004622
N291L291LCtaTta13AY.9.20.000037
N291L291LCtaTta33B.1.1.1410.006036
N291L291LCtaTta33B.1.1.2200.005576
N291L291LCtaTta33B.1.1.370.000579
N291L291LCtaTta33B.1.1.890.018182
N291L291LCtaTta33B.1.177.150.001893
N291L291LCtaTta23B.1.177.570.000562
N291L291LCtaTta33B.1.2340.000396
N291L291LCtaTta23B.1.3110.000549
N291L291LCtaTta33B.1.3500.008798
N291L291LCtaTta33B.1.3960.002117
N291L291LCtaTta33B.1.4620.021739
N291L291LCtaTta33B.1.5820.001472
N291L291LCtaTta33P.1.10.000953
N291L291LCtaTta33P.1.130.002695
N291L291LCtaTta33Q.40.001364
N291L291LCtaTta33U.10.038462
N291L291LCtaTta22A.2.20.003378
N291L291LCtaTta22A.210.00554
N291L291LCtaTta22AY.100.00106
N291L291LCtaTta22AY.1050.001286
N291L291LCtaTta12AY.1130.000142
N291L291LCtaTta22AY.190.002281
N291L291LCtaTta22AY.320.001065
N291L291LCtaTta22AY.350.000466
N291L291LCtaTta22AY.550.001835
N291L291LCtaTta22AY.860.00166
N291L291LCtaTta22B.1.1.1740.006757
N291L291LCtaTta22B.1.1.1920.004619
N291L291LCtaTta22B.1.1.2220.000408
N291L291LCtaTta22B.1.1.2630.003115
N291L291LCtaTta22B.1.1.3050.007722
N291L291LCtaTta12B.1.1.3060.000438
N291L291LCtaTta22B.1.1.3980.006452
N291L291LCtaTta22B.1.1.4090.005666
N291L291LCtaTta22B.1.1.4670.038462
N291L291LCtaTta22B.1.1.50.016667
N291L291LCtaTta22B.1.110.30.001437
N291L291LCtaTta22B.1.1460.008475
N291L291LCtaTta22B.1.177.600.000437
N291L291LCtaTta12B.1.177.630.002703
N291L291LCtaTta22B.1.214.30.014286
N291L291LCtaTta22B.1.258.70.003824
N291L291LCtaTta22B.1.3150.012121
N291L291LCtaTta22B.1.3490.00143
N291L291LCtaTta22B.1.351.50.001199
N291L291LCtaTta22B.1.3560.003454
N291L291LCtaTta22B.1.36.10.002281
N291L291LCtaTta22B.1.36.290.001035
N291L291LCtaTta22B.1.4330.00639
N291L291LCtaTta22B.1.4630.016129
N291L291LCtaTta22B.1.4780.023529
N291L291LCtaTta22B.1.4950.018182
N291L291LCtaTta22B.1.5060.047619
N291L291LCtaTta22B.1.5580.009132
N291L291LCtaTta22B.60.00182
N291L291LCtaTta22C.10.004785
N291L291LCtaTta22C.230.011628
N291L291LCtaTta22C.36.20.068966
N291L291LCtaTta22P.30.00319
N291L291LCtaTta11A0.000387
N291L291LCtaTta11A.10.000282
N291L291LCtaTta11A.270.001656
N291L291LCtaTta11A.280.002646
N291L291LCtaTta11AD.20.000219
N291L291LCtaTta11AE.80.000489
N291L291LCtaTta11AY.1080.001103
N291L291LCtaTta11AY.120.2.10.000498
N291L291LCtaTta11AY.140.000088
N291L291LCtaTta11AY.150.002222
N291L291LCtaTta11AY.160.00038
N291L291LCtaTta11AY.300.000396
N291L291LCtaTta11AY.34.10.00051
N291L291LCtaTta11AY.370.000316
N291L291LCtaTta11AY.4.2.10.000149
N291L291LCtaTta11AY.400.000964
N291L291LCtaTta11AY.410.000294
N291L291LCtaTta11AY.520.000814
N291L291LCtaTta11AY.530.000288
N291L291LCtaTta11AY.570.000656
N291L291LCtaTta11AY.680.000274
N291L291LCtaTta11AY.690.000187
N291L291LCtaTta11AY.7.20.000559
N291L291LCtaTta11AY.820.001357
N291L291LCtaTta11AY.830.001724
N291L291LCtaTta11AY.850.000427
N291L291LCtaTta11AY.880.000884
N291L291LCtaTta11AY.890.004902
N291L291LCtaTta11AY.910.00073
N291L291LCtaTta11AY.970.001701
N291L291LCtaTta11B.1.1.100.001115
N291L291LCtaTta11B.1.1.1180.010204
N291L291LCtaTta11B.1.1.1610.003534
N291L291LCtaTta11B.1.1.1710.003676
N291L291LCtaTta11B.1.1.2030.016949
N291L291LCtaTta11B.1.1.2070.001182
N291L291LCtaTta11B.1.1.2180.007692
N291L291LCtaTta11B.1.1.270.00565
N291L291LCtaTta11B.1.1.2730.006757
N291L291LCtaTta11B.1.1.2800.003086
N291L291LCtaTta11B.1.1.2970.002237
N291L291LCtaTta11B.1.1.3070.002532
N291L291LCtaTta11B.1.1.3090.005848
N291L291LCtaTta11B.1.1.3120.001912
N291L291LCtaTta11B.1.1.330.000421
N291L291LCtaTta11B.1.1.3510.002793
N291L291LCtaTta11B.1.1.3540.004386
N291L291LCtaTta11B.1.1.3750.011905
N291L291LCtaTta11B.1.1.4160.000905
N291L291LCtaTta11B.1.1.4340.000349
N291L291LCtaTta11B.1.1.4480.002033
N291L291LCtaTta11B.1.1.540.003021
N291L291LCtaTta11B.1.1.610.008772
N291L291LCtaTta11B.1.1400.018868
N291L291LCtaTta11B.1.1470.000756
N291L291LCtaTta11B.1.1570.002985
N291L291LCtaTta11B.1.160.250.011111
N291L291LCtaTta11B.1.177.100.000878
N291L291LCtaTta11B.1.177.110.001698
N291L291LCtaTta11B.1.177.60.000977
N291L291LCtaTta11B.1.177.830.001481
N291L291LCtaTta11B.1.177.870.000728
N291L291LCtaTta11B.1.2060.000816
N291L291LCtaTta11B.1.2100.002132
N291L291LCtaTta11B.1.214.20.0006
N291L291LCtaTta11B.1.2390.001221
N291L291LCtaTta11B.1.2400.000216
N291L291LCtaTta11B.1.258.150.018868
N291L291LCtaTta11B.1.3460.001311
N291L291LCtaTta11B.1.351.20.000303
N291L291LCtaTta11B.1.351.30.000876
N291L291LCtaTta11B.1.36.160.001425
N291L291LCtaTta11B.1.36.170.000494
N291L291LCtaTta11B.1.36.80.001
N291L291LCtaTta11B.1.3950.007042
N291L291LCtaTta11B.1.3990.001934
N291L291LCtaTta11B.1.4000.000429
N291L291LCtaTta11B.1.4090.000781
N291L291LCtaTta11B.1.4560.003268
N291L291LCtaTta11B.1.466.20.000391
N291L291LCtaTta11B.1.4700.001404
N291L291LCtaTta11B.1.5390.017544
N291L291LCtaTta11B.1.5550.022222
N291L291LCtaTta11B.1.5600.00463
N291L291LCtaTta11B.1.5650.00081
N291L291LCtaTta11B.1.5780.017857
N291L291LCtaTta11B.1.5880.00091
N291L291LCtaTta11B.1.5930.01087
N291L291LCtaTta11B.1.6100.003546
N291L291LCtaTta11B.1.621.10.000506
N291L291LCtaTta11B.1.6230.000536
N291L291LCtaTta11B.1.6280.000352
N291L291LCtaTta11B.1.9.40.006135
N291L291LCtaTta11B.1.9.50.005682
N291L291LCtaTta11B.1.910.002075
N291L291LCtaTta11B.30.000831
N291L291LCtaTta11C.160.00106
N291L291LCtaTta11C.180.002591
N291L291LCtaTta11C.36.3.10.002717
N291L291LCtaTta11L.30.003546
N291L291LCtaTta11P.1.120.000484
N291L291LCtaTta11P.1.140.000048
N291L291LCtaTta11P.1.150.000232
N291L291LCtaTta11P.1.170.000162
N291L291LCtaTta11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.