CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 282 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	282	T282T		syn	acC	acT	6113	5561	0.909701	29117-29119

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	282	T282T	acC	acT	5561	6113	All	0.001064
N	282	T282T	acC	acT	1299	1358	AY.25	0.007813
N	282	T282T	acC	acT	967	1228	B.1.1.7	0.000866
N	282	T282T	acC	acT	455	455	AY.69	0.084936
N	282	T282T	acC	acT	439	453	AY.4	0.000683
N	282	T282T	acC	acT	340	341	AY.119	0.012005
N	282	T282T	acC	acT	179	180	B.1.177	0.002357
N	282	T282T	acC	acT	60	139	AY.43	0.000266
N	282	T282T	acC	acT	138	138	AY.99.2	0.012718
N	282	T282T	acC	acT	121	131	B.1.617.2	0.000456
N	282	T282T	acC	acT	124	125	AY.44	0.000755
N	282	T282T	acC	acT	98	98	B.1.2	0.000863
N	282	T282T	acC	acT	74	84	AY.103	0.000459
N	282	T282T	acC	acT	79	82	AY.3.1	0.006735
N	282	T282T	acC	acT	76	79	B.1.1	0.001379
N	282	T282T	acC	acT	65	67	B.1	0.000595
N	282	T282T	acC	acT	64	66	P.1	0.001008
N	282	T282T	acC	acT	62	62	AY.42	0.002494
N	282	T282T	acC	acT	46	46	B.1.305	0.098925
N	282	T282T	acC	acT	40	42	AY.20	0.001555
N	282	T282T	acC	acT	41	42	AY.26	0.001161
N	282	T282T	acC	acT	36	39	AY.3	0.000358
N	282	T282T	acC	acT	31	31	B.1.1.526	0.109929
N	282	T282T	acC	acT	29	29	B.1.631	0.097643
N	282	T282T	acC	acT	28	28	B.1.525	0.003168
N	282	T282T	acC	acT	26	26	B.1.160	0.000811
N	282	T282T	acC	acT	25	25	AY.101	0.012261
N	282	T282T	acC	acT	23	25	AY.39	0.000568
N	282	T282T	acC	acT	21	21	B.1.177.82	0.010024
N	282	T282T	acC	acT	19	19	B.1.351	0.000565
N	282	T282T	acC	acT	18	18	B.1.243	0.001253
N	282	T282T	acC	acT	17	17	AY.100	0.000782
N	282	T282T	acC	acT	13	16	AY.5	0.000268
N	282	T282T	acC	acT	14	15	AY.47	0.000435
N	282	T282T	acC	acT	1	14	B.1.497	0.000315
N	282	T282T	acC	acT	14	14	B.1.526	0.000329
N	282	T282T	acC	acT	10	12	AY.102	0.000265
N	282	T282T	acC	acT	10	12	AY.9.2	0.000367
N	282	T282T	acC	acT	12	12	B.1.1.216	0.010686
N	282	T282T	acC	acT	12	12	B.1.181	0.235294
N	282	T282T	acC	acT	11	11	AY.111	0.002015
N	282	T282T	acC	acT	9	11	AY.29	0.000142
N	282	T282T	acC	acT	10	11	B.1.429	0.000235
N	282	T282T	acC	acT	10	10	AY.121	0.001353
N	282	T282T	acC	acT	9	9	AY.85	0.003845
N	282	T282T	acC	acT	9	9	B.1.1.464	0.013255
N	282	T282T	acC	acT	9	9	B.1.1.70	0.00307
N	282	T282T	acC	acT	7	8	AY.117	0.000592
N	282	T282T	acC	acT	8	8	AY.98.1	0.000387
N	282	T282T	acC	acT	8	8	B.1.1.519	0.000318
N	282	T282T	acC	acT	6	7	AY.4.2	0.00013
N	282	T282T	acC	acT	7	7	AY.4.5	0.000752
N	282	T282T	acC	acT	7	7	B.1.1.291	0.005197
N	282	T282T	acC	acT	7	7	B.1.177.62	0.008343
N	282	T282T	acC	acT	7	7	B.1.240	0.001509
N	282	T282T	acC	acT	7	7	B.1.350.1	1
N	282	T282T	acC	acT	7	7	B.1.36	0.001021
N	282	T282T	acC	acT	6	7	Q.1	0.000758
N	282	T282T	acC	acT	7	7	Q.3	0.001015
N	282	T282T	acC	acT	5	6	AY.23	0.000349
N	282	T282T	acC	acT	4	6	B.1.234	0.000528
N	282	T282T	acC	acT	6	6	B.1.466.2	0.002347
N	282	T282T	acC	acT	6	6	B.1.574	0.012903
N	282	T282T	acC	acT	5	5	A.19	0.04717
N	282	T282T	acC	acT	5	5	AY.45	0.000608
N	282	T282T	acC	acT	5	5	AY.54	0.000477
N	282	T282T	acC	acT	4	5	B.1.1.222	0.000816
N	282	T282T	acC	acT	5	5	B.1.177.60	0.001092
N	282	T282T	acC	acT	3	5	B.1.258	0.0002
N	282	T282T	acC	acT	5	5	B.1.427	0.000252
N	282	T282T	acC	acT	5	5	P.1.10	0.001347
N	282	T282T	acC	acT	4	4	AY.4.4	0.001637
N	282	T282T	acC	acT	3	4	AY.46	0.000312
N	282	T282T	acC	acT	3	4	AY.61	0.000314
N	282	T282T	acC	acT	4	4	AY.74	0.000463
N	282	T282T	acC	acT	4	4	B.1.1.28	0.001245
N	282	T282T	acC	acT	4	4	B.1.1.344	0.043011
N	282	T282T	acC	acT	4	4	B.1.1.50	0.002716
N	282	T282T	acC	acT	4	4	B.1.609	0.001918
N	282	T282T	acC	acT	4	4	P.1.14	0.000191
N	282	T282T	acC	acT	4	4	P.1.15	0.000929
N	282	T282T	acC	acT	3	3	AY.104	0.005952
N	282	T282T	acC	acT	3	3	AY.116	0.00086
N	282	T282T	acC	acT	2	3	AY.120	0.000074
N	282	T282T	acC	acT	3	3	AY.39.1	0.000119
N	282	T282T	acC	acT	3	3	AY.4.2.1	0.000447
N	282	T282T	acC	acT	3	3	B.1.1.1	0.00098
N	282	T282T	acC	acT	2	3	B.1.1.33	0.000842
N	282	T282T	acC	acT	3	3	B.1.1.412	0.022901
N	282	T282T	acC	acT	3	3	B.1.177.54	0.001819
N	282	T282T	acC	acT	3	3	B.1.177.56	0.002003
N	282	T282T	acC	acT	3	3	B.1.214.2	0.001799
N	282	T282T	acC	acT	3	3	B.1.221	0.000213
N	282	T282T	acC	acT	3	3	B.1.279	0.001541
N	282	T282T	acC	acT	3	3	B.1.36.17	0.001482
N	282	T282T	acC	acT	3	3	B.1.396	0.002117
N	282	T282T	acC	acT	3	3	B.1.408	0.01107
N	282	T282T	acC	acT	3	3	B.1.470	0.004213
N	282	T282T	acC	acT	3	3	B.1.561	0.001191
N	282	T282T	acC	acT	2	3	B.4	0.004415
N	282	T282T	acC	acT	3	3	D.2	0.000225
N	282	T282T	acC	acT	2	2	AY.116.1	0.000623
N	282	T282T	acC	acT	2	2	AY.118	0.000125
N	282	T282T	acC	acT	2	2	AY.120.1	0.000642
N	282	T282T	acC	acT	2	2	AY.27	0.000129
N	282	T282T	acC	acT	2	2	AY.33	0.000134
N	282	T282T	acC	acT	2	2	AY.36	0.000296
N	282	T282T	acC	acT	1	2	AY.62	0.000436
N	282	T282T	acC	acT	2	2	AY.75	0.000112
N	282	T282T	acC	acT	2	2	AY.75.1	0.000361
N	282	T282T	acC	acT	2	2	AY.9	0.000135
N	282	T282T	acC	acT	2	2	AY.91	0.001461
N	282	T282T	acC	acT	2	2	AY.98	0.000158
N	282	T282T	acC	acT	2	2	B	0.000256
N	282	T282T	acC	acT	2	2	B.1.1.26	0.010471
N	282	T282T	acC	acT	2	2	B.1.1.37	0.000386
N	282	T282T	acC	acT	2	2	B.1.110.3	0.001437
N	282	T282T	acC	acT	2	2	B.1.131	0.017544
N	282	T282T	acC	acT	2	2	B.1.236	0.004107
N	282	T282T	acC	acT	2	2	B.1.258.17	0.000208
N	282	T282T	acC	acT	2	2	B.1.36.28	0.011494
N	282	T282T	acC	acT	2	2	B.1.36.29	0.001035
N	282	T282T	acC	acT	2	2	B.1.404	0.002604
N	282	T282T	acC	acT	2	2	B.1.436	0.002058
N	282	T282T	acC	acT	2	2	B.1.517	0.000854
N	282	T282T	acC	acT	2	2	B.1.619.1	0.001283
N	282	T282T	acC	acT	2	2	B.1.620	0.001892
N	282	T282T	acC	acT	2	2	B.1.637	0.000146
N	282	T282T	acC	acT	2	2	B.23	0.005848
N	282	T282T	acC	acT	2	2	C.37	0.000232
N	282	T282T	acC	acT	2	2	Q.8	0.00033
N	282	T282T	acC	acT	2	2	S.1	0.009901
N	282	T282T	acC	acT	1	1	A	0.000387
N	282	T282T	acC	acT	1	1	A.1	0.000282
N	282	T282T	acC	acT	1	1	AD.2	0.000219
N	282	T282T	acC	acT	1	1	AY.106	0.000335
N	282	T282T	acC	acT	1	1	AY.110	0.000113
N	282	T282T	acC	acT	1	1	AY.113	0.000142
N	282	T282T	acC	acT	1	1	AY.14	0.000088
N	282	T282T	acC	acT	1	1	AY.15	0.002222
N	282	T282T	acC	acT	1	1	AY.16.1	0.00047
N	282	T282T	acC	acT	1	1	AY.28	0.00189
N	282	T282T	acC	acT	1	1	AY.32	0.000532
N	282	T282T	acC	acT	1	1	AY.37	0.000316
N	282	T282T	acC	acT	1	1	AY.38	0.000499
N	282	T282T	acC	acT	1	1	AY.4.3	0.000842
N	282	T282T	acC	acT	1	1	AY.59	0.00053
N	282	T282T	acC	acT	1	1	AY.6	0.000041
N	282	T282T	acC	acT	1	1	AY.67	0.000464
N	282	T282T	acC	acT	1	1	AY.68	0.000274
N	282	T282T	acC	acT	1	1	AY.7.1	0.000113
N	282	T282T	acC	acT	1	1	AY.73	0.000665
N	282	T282T	acC	acT	1	1	AY.77	0.001127
N	282	T282T	acC	acT	1	1	AY.84	0.000437
N	282	T282T	acC	acT	1	1	AY.9.1	0.000084
N	282	T282T	acC	acT	1	1	AY.90	0.000684
N	282	T282T	acC	acT	1	1	AY.92	0.000287
N	282	T282T	acC	acT	1	1	AY.99	0.001049
N	282	T282T	acC	acT	1	1	B.1.1.153	0.001095
N	282	T282T	acC	acT	1	1	B.1.1.161	0.003534
N	282	T282T	acC	acT	1	1	B.1.1.198	0.001468
N	282	T282T	acC	acT	1	1	B.1.1.214	0.000055
N	282	T282T	acC	acT	1	1	B.1.1.220	0.001859
N	282	T282T	acC	acT	1	1	B.1.1.27	0.00565
N	282	T282T	acC	acT	1	1	B.1.1.284	0.000107
N	282	T282T	acC	acT	1	1	B.1.1.304	0.002809
N	282	T282T	acC	acT	1	1	B.1.1.316	0.000925
N	282	T282T	acC	acT	1	1	B.1.1.353	0.020833
N	282	T282T	acC	acT	1	1	B.1.1.372	0.000689
N	282	T282T	acC	acT	1	1	B.1.1.409	0.002833
N	282	T282T	acC	acT	1	1	B.1.1.484	0.1
N	282	T282T	acC	acT	1	1	B.1.1.63	0.000386
N	282	T282T	acC	acT	1	1	B.1.111	0.001175
N	282	T282T	acC	acT	1	1	B.1.160.12	0.00641
N	282	T282T	acC	acT	1	1	B.1.160.16	0.000929
N	282	T282T	acC	acT	1	1	B.1.177.43	0.001477
N	282	T282T	acC	acT	1	1	B.1.177.5	0.001242
N	282	T282T	acC	acT	1	1	B.1.177.55	0.002331
N	282	T282T	acC	acT	1	1	B.1.177.57	0.000281
N	282	T282T	acC	acT	1	1	B.1.177.88	0.012346
N	282	T282T	acC	acT	1	1	B.1.214	0.003663
N	282	T282T	acC	acT	1	1	B.1.232	0.000537
N	282	T282T	acC	acT	1	1	B.1.351.2	0.000303
N	282	T282T	acC	acT	1	1	B.1.36.1	0.00114
N	282	T282T	acC	acT	1	1	B.1.371	0.001122
N	282	T282T	acC	acT	1	1	B.1.524	0.001406
N	282	T282T	acC	acT	1	1	B.1.540	0.009709
N	282	T282T	acC	acT	1	1	B.1.545	0.014493
N	282	T282T	acC	acT	1	1	B.1.568	0.001111
N	282	T282T	acC	acT	1	1	B.1.575	0.000303
N	282	T282T	acC	acT	1	1	B.1.577	0.000687
N	282	T282T	acC	acT	1	1	B.1.588	0.00091
N	282	T282T	acC	acT	1	1	B.1.596	0.000087
N	282	T282T	acC	acT	1	1	B.1.621	0.000089
N	282	T282T	acC	acT	1	1	B.1.628	0.000352
N	282	T282T	acC	acT	1	1	B.40	0.000364
N	282	T282T	acC	acT	1	1	C.16	0.00106
N	282	T282T	acC	acT	1	1	P.1.17	0.000162
N	282	T282T	acC	acT	1	1	P.1.7	0.000319
N	282	T282T	acC	acT	1	1	P.2	0.000187
N	282	T282T	acC	acT	1	1	P.3	0.001595
N	282	T282T	acC	acT	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.