CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 282

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	282	T282T		syn	acC	acT	6113	5561	0.909701	29117-29119
N	282	T282T		syn	acC	acA	6113	334	0.0546377	29117-29119
N	282	T282T		syn	acC	acG	6113	218	0.0356617	29117-29119
N	282	T282I		nonsyn	aCc	aTc	1094	1094	1	29117-29119
N	282	T282S		nonsyn	Acc	Tcc	184	184	1	29117-29119
N	282	T282N		nonsyn	aCc	aAc	79	79	1	29117-29119
N	282	T282A		nonsyn	Acc	Gcc	55	54	0.981818	29117-29119
N	282	T282A		nonsyn	AcC	GcG	55	1	0.0181818	29117-29119
N	282	T282del		del	ACC	---	17	17	1	29117-29119
N	282	T282P		nonsyn	Acc	Ccc	7	7	1	29117-29119
N	282	T282M		nonsyn	aCC	aTG	4	4	1	29117-29119
N	282	T282K		nonsyn	aCC	aAG	2	2	1	29117-29119
N	282	T282del1		del	aCc	a-c	2	1	0.5	29117-29119
N	282	T282del1		del	AcC	Cc-	2	1	0.5	29117-29119
N	282	T282Q		nonsyn	ACC	CAA	1	1	1	29117-29119

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	282	T282T	acC	acT	5561	6113	All	0.001064
N	282	T282T	acC	acA	334	6113	All	0.000064
N	282	T282T	acC	acG	218	6113	All	0.000042
N	282	T282T	acC	acT	1299	1358	AY.25	0.007813
N	282	T282T	acC	acA	58	1358	AY.25	0.000349
N	282	T282T	acC	acG	1	1358	AY.25	0.000006
N	282	T282T	acC	acT	967	1228	B.1.1.7	0.000866
N	282	T282T	acC	acA	188	1228	B.1.1.7	0.000168
N	282	T282T	acC	acG	73	1228	B.1.1.7	0.000065
N	282	T282I	aCc	aTc	1094	1094	All	0.000209
N	282	T282T	acC	acT	455	455	AY.69	0.084936
N	282	T282T	acC	acT	439	453	AY.4	0.000683
N	282	T282T	acC	acA	11	453	AY.4	0.000017
N	282	T282T	acC	acG	3	453	AY.4	0.000005
N	282	T282T	acC	acT	340	341	AY.119	0.012005
N	282	T282T	acC	acA	1	341	AY.119	0.000035
N	282	T282I	aCc	aTc	193	193	AY.4	0.0003
N	282	T282I	aCc	aTc	190	190	B.1.1.7	0.00017
N	282	T282S	Acc	Tcc	184	184	All	0.000035
N	282	T282T	acC	acT	179	180	B.1.177	0.002357
N	282	T282T	acC	acG	1	180	B.1.177	0.000013
N	282	T282S	Acc	Tcc	162	162	AY.4.2	0.003514
N	282	T282T	acC	acG	75	139	AY.43	0.000332
N	282	T282T	acC	acT	60	139	AY.43	0.000266
N	282	T282T	acC	acA	4	139	AY.43	0.000018
N	282	T282T	acC	acT	138	138	AY.99.2	0.012718
N	282	T282T	acC	acT	121	131	B.1.617.2	0.000456
N	282	T282T	acC	acA	8	131	B.1.617.2	0.00003
N	282	T282T	acC	acG	2	131	B.1.617.2	0.000008
N	282	T282T	acC	acT	124	125	AY.44	0.000755
N	282	T282T	acC	acA	1	125	AY.44	0.000006
N	282	T282T	acC	acT	98	98	B.1.2	0.000863
N	282	T282T	acC	acT	74	84	AY.103	0.000459
N	282	T282T	acC	acG	7	84	AY.103	0.000043
N	282	T282T	acC	acA	3	84	AY.103	0.000019
N	282	T282T	acC	acT	79	82	AY.3.1	0.006735
N	282	T282T	acC	acA	3	82	AY.3.1	0.000256
N	282	T282N	aCc	aAc	79	79	All	0.000015
N	282	T282T	acC	acT	76	79	B.1.1	0.001379
N	282	T282T	acC	acG	3	79	B.1.1	0.000054
N	282	T282I	aCc	aTc	67	67	AY.29	0.001057
N	282	T282T	acC	acT	65	67	B.1	0.000595
N	282	T282T	acC	acG	1	67	B.1	0.000009
N	282	T282T	acC	acA	1	67	B.1	0.000009
N	282	T282T	acC	acT	64	66	P.1	0.001008
N	282	T282T	acC	acA	1	66	P.1	0.000016
N	282	T282T	acC	acG	1	66	P.1	0.000016
N	282	T282T	acC	acT	62	62	AY.42	0.002494
N	282	T282A	Acc	Gcc	54	55	All	0.00001
N	282	T282A	AcC	GcG	1	55	All	0
N	282	T282I	aCc	aTc	54	54	AY.44	0.000329
N	282	T282T	acC	acT	46	46	B.1.305	0.098925
N	282	T282I	aCc	aTc	44	44	AY.103	0.000273
N	282	T282I	aCc	aTc	44	44	AY.25	0.000265
N	282	T282T	acC	acT	40	42	AY.20	0.001555
N	282	T282T	acC	acA	2	42	AY.20	0.000078
N	282	T282T	acC	acT	41	42	AY.26	0.001161
N	282	T282T	acC	acA	1	42	AY.26	0.000028
N	282	T282A	Acc	Gcc	40	40	B.1.1.7	0.000036
N	282	T282T	acC	acT	36	39	AY.3	0.000358
N	282	T282T	acC	acG	3	39	AY.3	0.00003
N	282	T282I	aCc	aTc	39	39	B.1.429	0.000918
N	282	T282I	aCc	aTc	35	35	B.1.617.2	0.000132
N	282	T282T	acC	acG	34	34	AY.13	0.005473
N	282	T282N	aCc	aAc	32	32	B.1.1.7	0.000029
N	282	T282T	acC	acT	31	31	B.1.1.526	0.109929
N	282	T282T	acC	acT	29	29	B.1.631	0.097643
N	282	T282T	acC	acT	28	28	B.1.525	0.003168
N	282	T282I	aCc	aTc	26	26	B.1.1.519	0.001032
N	282	T282T	acC	acT	26	26	B.1.160	0.000811
N	282	T282T	acC	acT	25	25	AY.101	0.012261
N	282	T282I	aCc	aTc	25	25	AY.33	0.001669
N	282	T282T	acC	acT	23	25	AY.39	0.000568
N	282	T282T	acC	acG	1	25	AY.39	0.000025
N	282	T282T	acC	acA	1	25	AY.39	0.000025
N	282	T282I	aCc	aTc	23	23	B.1.258	0.001531
N	282	T282I	aCc	aTc	22	22	P.1	0.000347
N	282	T282T	acC	acT	21	21	B.1.177.82	0.010024
N	282	T282I	aCc	aTc	20	20	B.1.2	0.000176
N	282	T282T	acC	acT	19	19	B.1.351	0.000565
N	282	T282T	acC	acT	18	18	B.1.243	0.001253
N	282	T282del	ACC	---	17	17	All	0.000003
N	282	T282T	acC	acT	17	17	AY.100	0.000782
N	282	T282I	aCc	aTc	16	16	AY.120	0.000595
N	282	T282I	aCc	aTc	16	16	AY.43	0.000071
N	282	T282T	acC	acT	13	16	AY.5	0.000268
N	282	T282T	acC	acA	3	16	AY.5	0.000062
N	282	T282I	aCc	aTc	15	15	AY.4.5	0.001612
N	282	T282T	acC	acT	14	15	AY.47	0.000435
N	282	T282T	acC	acA	1	15	AY.47	0.000031
N	282	T282T	acC	acA	13	14	B.1.497	0.004092
N	282	T282T	acC	acT	1	14	B.1.497	0.000315
N	282	T282T	acC	acT	14	14	B.1.526	0.000329
N	282	T282T	acC	acT	10	12	AY.102	0.000265
N	282	T282T	acC	acA	2	12	AY.102	0.000053
N	282	T282S	Acc	Tcc	12	12	AY.39	0.000297
N	282	T282T	acC	acT	10	12	AY.9.2	0.000367
N	282	T282T	acC	acA	2	12	AY.9.2	0.000073
N	282	T282T	acC	acT	12	12	B.1.1.216	0.010686
N	282	T282T	acC	acT	12	12	B.1.181	0.235294
N	282	T282T	acC	acT	11	11	AY.111	0.002015
N	282	T282I	aCc	aTc	11	11	AY.26	0.000311
N	282	T282T	acC	acT	9	11	AY.29	0.000142
N	282	T282T	acC	acA	2	11	AY.29	0.000032
N	282	T282I	aCc	aTc	11	11	AY.46	0.001145
N	282	T282I	aCc	aTc	11	11	B.1	0.000101
N	282	T282I	aCc	aTc	11	11	B.1.177	0.000145
N	282	T282T	acC	acT	10	11	B.1.429	0.000235
N	282	T282T	acC	acA	1	11	B.1.429	0.000024
N	282	T282I	aCc	aTc	11	11	C.36	0.010018
N	282	T282T	acC	acT	10	10	AY.121	0.001353
N	282	T282T	acC	acT	9	9	AY.85	0.003845
N	282	T282I	aCc	aTc	9	9	B.1.1	0.000163
N	282	T282T	acC	acT	9	9	B.1.1.464	0.013255
N	282	T282T	acC	acT	9	9	B.1.1.70	0.00307
N	282	T282T	acC	acA	9	9	B.1.177.21	0.000688
N	282	T282I	aCc	aTc	8	8	AY.111	0.001465
N	282	T282T	acC	acT	7	8	AY.117	0.000592
N	282	T282T	acC	acA	1	8	AY.117	0.000085
N	282	T282I	aCc	aTc	8	8	AY.119	0.000282
N	282	T282I	aCc	aTc	8	8	AY.3	0.00008
N	282	T282I	aCc	aTc	8	8	AY.7.1	0.000902
N	282	T282T	acC	acT	8	8	AY.98.1	0.000387
N	282	T282T	acC	acT	8	8	B.1.1.519	0.000318
N	282	T282I	aCc	aTc	8	8	B.1.428	0.008163
N	282	T282P	Acc	Ccc	7	7	All	0.000001
N	282	T282I	aCc	aTc	7	7	AY.102	0.000186
N	282	T282I	aCc	aTc	7	7	AY.16.1	0.003289
N	282	T282I	aCc	aTc	7	7	AY.20	0.000272
N	282	T282T	acC	acT	6	7	AY.4.2	0.00013
N	282	T282T	acC	acG	1	7	AY.4.2	0.000022
N	282	T282T	acC	acT	7	7	AY.4.5	0.000752
N	282	T282N	aCc	aAc	7	7	B.1	0.000064
N	282	T282T	acC	acT	7	7	B.1.1.291	0.005197
N	282	T282T	acC	acT	7	7	B.1.177.62	0.008343
N	282	T282T	acC	acT	7	7	B.1.240	0.001509
N	282	T282T	acC	acT	7	7	B.1.350.1	1
N	282	T282T	acC	acT	7	7	B.1.36	0.001021
N	282	T282T	acC	acT	6	7	Q.1	0.000758
N	282	T282T	acC	acA	1	7	Q.1	0.000126
N	282	T282T	acC	acT	7	7	Q.3	0.001015
N	282	T282T	acC	acT	5	6	AY.23	0.000349
N	282	T282T	acC	acG	1	6	AY.23	0.00007
N	282	T282N	aCc	aAc	6	6	AY.25	0.000036
N	282	T282N	aCc	aAc	6	6	AY.4.4	0.002455
N	282	T282T	acC	acT	4	6	B.1.234	0.000528
N	282	T282T	acC	acA	2	6	B.1.234	0.000264
N	282	T282T	acC	acT	6	6	B.1.466.2	0.002347
N	282	T282T	acC	acT	6	6	B.1.574	0.012903
N	282	T282I	aCc	aTc	6	6	D.2	0.00045
N	282	T282T	acC	acT	5	5	A.19	0.04717
N	282	T282I	aCc	aTc	5	5	AY.30	0.001979
N	282	T282T	acC	acG	5	5	AY.35	0.001165
N	282	T282T	acC	acT	5	5	AY.45	0.000608
N	282	T282T	acC	acT	5	5	AY.54	0.000477
N	282	T282T	acC	acT	4	5	B.1.1.222	0.000816
N	282	T282T	acC	acA	1	5	B.1.1.222	0.000204
N	282	T282N	aCc	aAc	5	5	B.1.160.14	0.010593
N	282	T282I	aCc	aTc	5	5	B.1.177.52	0.008787
N	282	T282T	acC	acT	5	5	B.1.177.60	0.001092
N	282	T282T	acC	acT	3	5	B.1.258	0.0002
N	282	T282T	acC	acG	2	5	B.1.258	0.000133
N	282	T282I	aCc	aTc	5	5	B.1.36	0.00073
N	282	T282T	acC	acT	5	5	B.1.427	0.000252
N	282	T282N	aCc	aAc	5	5	B.1.617.2	0.000019
N	282	T282T	acC	acT	5	5	P.1.10	0.001347
N	282	T282M	aCC	aTG	4	4		0.222222
N	282	T282M	aCC	aTG	4	4	All	0.000001
N	282	T282P	Acc	Ccc	4	4	AY.103	0.000025
N	282	T282N	aCc	aAc	4	4	AY.103	0.000025
N	282	T282I	aCc	aTc	4	4	AY.29.1	0.000882
N	282	T282T	acC	acT	4	4	AY.4.4	0.001637
N	282	T282T	acC	acT	3	4	AY.46	0.000312
N	282	T282T	acC	acA	1	4	AY.46	0.000104
N	282	T282T	acC	acT	3	4	AY.61	0.000314
N	282	T282T	acC	acA	1	4	AY.61	0.000105
N	282	T282T	acC	acT	4	4	AY.74	0.000463
N	282	T282T	acC	acT	4	4	B.1.1.28	0.001245
N	282	T282T	acC	acT	4	4	B.1.1.344	0.043011
N	282	T282I	aCc	aTc	4	4	B.1.1.37	0.000771
N	282	T282T	acC	acT	4	4	B.1.1.50	0.002716
N	282	T282I	aCc	aTc	4	4	B.1.160	0.000125
N	282	T282T	acC	acT	4	4	B.1.609	0.001918
N	282	T282S	Acc	Tcc	4	4	B.1.617.2	0.000015
N	282	T282T	acC	acT	4	4	P.1.14	0.000191
N	282	T282T	acC	acT	4	4	P.1.15	0.000929
N	282	T282T	acC	acT	3	3	AY.104	0.005952
N	282	T282I	aCc	aTc	3	3	AY.116	0.00086
N	282	T282T	acC	acT	3	3	AY.116	0.00086
N	282	T282T	acC	acT	2	3	AY.120	0.000074
N	282	T282T	acC	acA	1	3	AY.120	0.000037
N	282	T282I	aCc	aTc	3	3	AY.39	0.000074
N	282	T282T	acC	acT	3	3	AY.39.1	0.000119
N	282	T282N	aCc	aAc	3	3	AY.4	0.000005
N	282	T282S	Acc	Tcc	3	3	AY.4	0.000005
N	282	T282A	Acc	Gcc	3	3	AY.4	0.000005
N	282	T282I	aCc	aTc	3	3	AY.4.2	0.000065
N	282	T282I	aCc	aTc	3	3	AY.4.2.1	0.000447
N	282	T282T	acC	acT	3	3	AY.4.2.1	0.000447
N	282	T282I	aCc	aTc	3	3	AY.5	0.000062
N	282	T282T	acC	acT	3	3	B.1.1.1	0.00098
N	282	T282I	aCc	aTc	3	3	B.1.1.318	0.000905
N	282	T282T	acC	acT	2	3	B.1.1.33	0.000842
N	282	T282T	acC	acA	1	3	B.1.1.33	0.000421
N	282	T282T	acC	acT	3	3	B.1.1.412	0.022901
N	282	T282del	ACC	---	3	3	B.1.1.7	0.000003
N	282	T282T	acC	acT	3	3	B.1.177.54	0.001819
N	282	T282T	acC	acT	3	3	B.1.177.56	0.002003
N	282	T282T	acC	acT	3	3	B.1.214.2	0.001799
N	282	T282T	acC	acT	3	3	B.1.221	0.000213
N	282	T282I	aCc	aTc	3	3	B.1.234	0.000396
N	282	T282T	acC	acT	3	3	B.1.279	0.001541
N	282	T282T	acC	acT	3	3	B.1.36.17	0.001482
N	282	T282I	aCc	aTc	3	3	B.1.362	0.004622
N	282	T282T	acC	acT	3	3	B.1.396	0.002117
N	282	T282T	acC	acT	3	3	B.1.408	0.01107
N	282	T282I	aCc	aTc	3	3	B.1.438.1	0.000322
N	282	T282T	acC	acT	3	3	B.1.470	0.004213
N	282	T282I	aCc	aTc	3	3	B.1.499	0.003151
N	282	T282T	acC	acT	3	3	B.1.561	0.001191
N	282	T282I	aCc	aTc	3	3	B.1.621	0.000266
N	282	T282T	acC	acT	2	3	B.4	0.004415
N	282	T282T	acC	acG	1	3	B.4	0.002208
N	282	T282T	acC	acT	3	3	D.2	0.000225
N	282	T282K	aCC	aAG	2	2		0.111111
N	282	T282T	acC	acG	2	2		0.111111
N	282	T282N	aCc	aAc	2	2		0.111111
N	282	T282K	aCC	aAG	2	2	All	0
N	282	T282del1	aCc	a-c	1	2	All	0
N	282	T282del1	AcC	Cc-	1	2	All	0
N	282	T282T	acC	acT	2	2	AY.116.1	0.000623
N	282	T282I	aCc	aTc	2	2	AY.117	0.000169
N	282	T282T	acC	acT	2	2	AY.118	0.000125
N	282	T282T	acC	acT	2	2	AY.120.1	0.000642
N	282	T282I	aCc	aTc	2	2	AY.23	0.000139
N	282	T282I	aCc	aTc	2	2	AY.27	0.000129
N	282	T282T	acC	acT	2	2	AY.27	0.000129
N	282	T282T	acC	acT	2	2	AY.33	0.000134
N	282	T282T	acC	acT	2	2	AY.36	0.000296
N	282	T282del	ACC	---	2	2	AY.43	0.000009
N	282	T282A	Acc	Gcc	2	2	AY.43	0.000009
N	282	T282A	Acc	Gcc	2	2	AY.47	0.000062
N	282	T282T	acC	acG	1	2	AY.62	0.000436
N	282	T282T	acC	acT	1	2	AY.62	0.000436
N	282	T282T	acC	acT	2	2	AY.75	0.000112
N	282	T282T	acC	acT	2	2	AY.75.1	0.000361
N	282	T282T	acC	acT	2	2	AY.9	0.000135
N	282	T282T	acC	acT	2	2	AY.91	0.001461
N	282	T282T	acC	acT	2	2	AY.98	0.000158
N	282	T282T	acC	acT	2	2	B	0.000256
N	282	T282N	aCc	aAc	2	2	B.1.1	0.000036
N	282	T282T	acC	acT	2	2	B.1.1.26	0.010471
N	282	T282I	aCc	aTc	2	2	B.1.1.317	0.000823
N	282	T282T	acC	acT	2	2	B.1.1.37	0.000386
N	282	T282I	aCc	aTc	2	2	B.1.1.63	0.000772
N	282	T282T	acC	acT	2	2	B.1.110.3	0.001437
N	282	T282T	acC	acT	2	2	B.1.131	0.017544
N	282	T282I	aCc	aTc	2	2	B.1.177.42	0.001789
N	282	T282T	acC	acT	2	2	B.1.236	0.004107
N	282	T282I	aCc	aTc	2	2	B.1.240	0.000431
N	282	T282I	aCc	aTc	2	2	B.1.243	0.000139
N	282	T282I	aCc	aTc	2	2	B.1.258.17	0.000208
N	282	T282T	acC	acT	2	2	B.1.258.17	0.000208
N	282	T282T	acC	acT	2	2	B.1.36.28	0.011494
N	282	T282T	acC	acT	2	2	B.1.36.29	0.001035
N	282	T282T	acC	acT	2	2	B.1.404	0.002604
N	282	T282T	acC	acT	2	2	B.1.436	0.002058
N	282	T282T	acC	acT	2	2	B.1.517	0.000854
N	282	T282I	aCc	aTc	2	2	B.1.617.1	0.000258
N	282	T282T	acC	acT	2	2	B.1.619.1	0.001283
N	282	T282T	acC	acT	2	2	B.1.620	0.001892
N	282	T282T	acC	acT	2	2	B.1.637	0.000146
N	282	T282N	aCc	aAc	2	2	B.1.637	0.000146
N	282	T282T	acC	acT	2	2	B.23	0.005848
N	282	T282T	acC	acT	2	2	C.37	0.000232
N	282	T282P	Acc	Ccc	2	2	D.2	0.00015
N	282	T282T	acC	acT	2	2	Q.8	0.00033
N	282	T282T	acC	acT	2	2	S.1	0.009901
N	282	T282T	acC	acT	1	1	A	0.000387
N	282	T282T	acC	acT	1	1	A.1	0.000282
N	282	T282I	aCc	aTc	1	1	A.29	0.005319
N	282	T282T	acC	acT	1	1	AD.2	0.000219
N	282	T282Q	ACC	CAA	1	1	All	0
N	282	T282I	aCc	aTc	1	1	AY.100	0.000046
N	282	T282del	ACC	---	1	1	AY.100	0.000046
N	282	T282T	acC	acT	1	1	AY.106	0.000335
N	282	T282I	aCc	aTc	1	1	AY.109	0.00074
N	282	T282T	acC	acT	1	1	AY.110	0.000113
N	282	T282T	acC	acT	1	1	AY.113	0.000142
N	282	T282I	aCc	aTc	1	1	AY.113	0.000142
N	282	T282I	aCc	aTc	1	1	AY.118	0.000063
N	282	T282I	aCc	aTc	1	1	AY.120.2.1	0.000498
N	282	T282I	aCc	aTc	1	1	AY.13	0.000161
N	282	T282A	AcC	GcG	1	1	AY.13	0.000161
N	282	T282I	aCc	aTc	1	1	AY.14	0.000088
N	282	T282T	acC	acT	1	1	AY.14	0.000088
N	282	T282T	acC	acT	1	1	AY.15	0.002222
N	282	T282T	acC	acT	1	1	AY.16.1	0.00047
N	282	T282del	ACC	---	1	1	AY.25	0.000006
N	282	T282T	acC	acT	1	1	AY.28	0.00189
N	282	T282A	Acc	Gcc	1	1	AY.29	0.000016
N	282	T282I	aCc	aTc	1	1	AY.3.1	0.000085
N	282	T282T	acC	acT	1	1	AY.32	0.000532
N	282	T282I	aCc	aTc	1	1	AY.34	0.000097
N	282	T282I	aCc	aTc	1	1	AY.34.1	0.00051
N	282	T282I	aCc	aTc	1	1	AY.36	0.000148
N	282	T282T	acC	acT	1	1	AY.37	0.000316
N	282	T282T	acC	acT	1	1	AY.38	0.000499
N	282	T282I	aCc	aTc	1	1	AY.38	0.000499
N	282	T282T	acC	acT	1	1	AY.4.3	0.000842
N	282	T282I	aCc	aTc	1	1	AY.40	0.000964
N	282	T282I	aCc	aTc	1	1	AY.42	0.00004
N	282	T282del1	AcC	Cc-	1	1	AY.44	0.000006
N	282	T282I	aCc	aTc	1	1	AY.45	0.000122
N	282	T282I	aCc	aTc	1	1	AY.46.2	0.000635
N	282	T282I	aCc	aTc	1	1	AY.46.4	0.000165
N	282	T282I	aCc	aTc	1	1	AY.47	0.000031
N	282	T282I	aCc	aTc	1	1	AY.53	0.000288
N	282	T282T	acC	acT	1	1	AY.59	0.00053
N	282	T282T	acC	acT	1	1	AY.6	0.000041
N	282	T282I	aCc	aTc	1	1	AY.6	0.000041
N	282	T282del	ACC	---	1	1	AY.67	0.000464
N	282	T282I	aCc	aTc	1	1	AY.67	0.000464
N	282	T282T	acC	acT	1	1	AY.67	0.000464
N	282	T282T	acC	acT	1	1	AY.68	0.000274
N	282	T282T	acC	acT	1	1	AY.7.1	0.000113
N	282	T282T	acC	acT	1	1	AY.73	0.000665
N	282	T282del	ACC	---	1	1	AY.75	0.000056
N	282	T282T	acC	acT	1	1	AY.77	0.001127
N	282	T282T	acC	acA	1	1	AY.8	0.000606
N	282	T282I	aCc	aTc	1	1	AY.84	0.000437
N	282	T282T	acC	acT	1	1	AY.84	0.000437
N	282	T282T	acC	acA	1	1	AY.86	0.00083
N	282	T282I	aCc	aTc	1	1	AY.9	0.000068
N	282	T282T	acC	acT	1	1	AY.9.1	0.000084
N	282	T282T	acC	acT	1	1	AY.90	0.000684
N	282	T282T	acC	acT	1	1	AY.92	0.000287
N	282	T282I	aCc	aTc	1	1	AY.98	0.000079
N	282	T282I	aCc	aTc	1	1	AY.98.1	0.000048
N	282	T282del	ACC	---	1	1	AY.98.1	0.000048
N	282	T282T	acC	acT	1	1	AY.99	0.001049
N	282	T282N	aCc	aAc	1	1	B	0.000128
N	282	T282A	Acc	Gcc	1	1	B.1	0.000009
N	282	T282del	ACC	---	1	1	B.1	0.000009
N	282	T282del	ACC	---	1	1	B.1.1	0.000018
N	282	T282S	Acc	Tcc	1	1	B.1.1	0.000018
N	282	T282I	aCc	aTc	1	1	B.1.1.1	0.000327
N	282	T282I	aCc	aTc	1	1	B.1.1.10	0.001115
N	282	T282I	aCc	aTc	1	1	B.1.1.101	0.01
N	282	T282T	acC	acT	1	1	B.1.1.153	0.001095
N	282	T282T	acC	acT	1	1	B.1.1.161	0.003534
N	282	T282T	acC	acT	1	1	B.1.1.198	0.001468
N	282	T282T	acC	acT	1	1	B.1.1.214	0.000055
N	282	T282I	aCc	aTc	1	1	B.1.1.216	0.00089
N	282	T282T	acC	acT	1	1	B.1.1.220	0.001859
N	282	T282A	Acc	Gcc	1	1	B.1.1.25	0.000569
N	282	T282T	acC	acT	1	1	B.1.1.27	0.00565
N	282	T282T	acC	acT	1	1	B.1.1.284	0.000107
N	282	T282T	acC	acT	1	1	B.1.1.304	0.002809
N	282	T282T	acC	acT	1	1	B.1.1.316	0.000925
N	282	T282T	acC	acT	1	1	B.1.1.353	0.020833
N	282	T282I	aCc	aTc	1	1	B.1.1.354	0.004386
N	282	T282T	acC	acT	1	1	B.1.1.372	0.000689
N	282	T282T	acC	acT	1	1	B.1.1.409	0.002833
N	282	T282T	acC	acT	1	1	B.1.1.484	0.1
N	282	T282Q	ACC	CAA	1	1	B.1.1.500	0.02
N	282	T282A	Acc	Gcc	1	1	B.1.1.519	0.00004
N	282	T282T	acC	acA	1	1	B.1.1.523	0.001563
N	282	T282T	acC	acT	1	1	B.1.1.63	0.000386
N	282	T282I	aCc	aTc	1	1	B.1.1.71	0.006061
N	282	T282T	acC	acT	1	1	B.1.111	0.001175
N	282	T282T	acC	acT	1	1	B.1.160.12	0.00641
N	282	T282T	acC	acT	1	1	B.1.160.16	0.000929
N	282	T282I	aCc	aTc	1	1	B.1.177.21	0.000076
N	282	T282T	acC	acT	1	1	B.1.177.43	0.001477
N	282	T282T	acC	acT	1	1	B.1.177.5	0.001242
N	282	T282I	aCc	aTc	1	1	B.1.177.53	0.002392
N	282	T282T	acC	acT	1	1	B.1.177.55	0.002331
N	282	T282T	acC	acT	1	1	B.1.177.57	0.000281
N	282	T282I	aCc	aTc	1	1	B.1.177.57	0.000281
N	282	T282I	aCc	aTc	1	1	B.1.177.58	0.001332
N	282	T282A	Acc	Gcc	1	1	B.1.177.63	0.002703
N	282	T282del	ACC	---	1	1	B.1.177.83	0.001481
N	282	T282T	acC	acT	1	1	B.1.177.88	0.012346
N	282	T282N	aCc	aAc	1	1	B.1.2	0.000009
N	282	T282I	aCc	aTc	1	1	B.1.201	0.005682
N	282	T282T	acC	acT	1	1	B.1.214	0.003663
N	282	T282T	acC	acA	1	1	B.1.221.3	0.000833
N	282	T282I	aCc	aTc	1	1	B.1.232	0.000537
N	282	T282T	acC	acT	1	1	B.1.232	0.000537
N	282	T282S	Acc	Tcc	1	1	B.1.258	0.000067
N	282	T282N	aCc	aAc	1	1	B.1.258.17	0.000104
N	282	T282T	acC	acA	1	1	B.1.332	0.003497
N	282	T282I	aCc	aTc	1	1	B.1.351	0.00003
N	282	T282N	aCc	aAc	1	1	B.1.351	0.00003
N	282	T282T	acC	acT	1	1	B.1.351.2	0.000303
N	282	T282T	acC	acT	1	1	B.1.36.1	0.00114
N	282	T282I	aCc	aTc	1	1	B.1.36.29	0.000517
N	282	T282T	acC	acA	1	1	B.1.362	0.001541
N	282	T282T	acC	acA	1	1	B.1.369	0.000285
N	282	T282T	acC	acT	1	1	B.1.371	0.001122
N	282	T282I	aCc	aTc	1	1	B.1.383	0.009009
N	282	T282P	Acc	Ccc	1	1	B.1.427	0.00005
N	282	T282A	Acc	Gcc	1	1	B.1.427	0.00005
N	282	T282del	ACC	---	1	1	B.1.439	0.005917
N	282	T282T	acC	acA	1	1	B.1.453	0.003236
N	282	T282I	aCc	aTc	1	1	B.1.466.2	0.000391
N	282	T282N	aCc	aAc	1	1	B.1.501	0.007353
N	282	T282I	aCc	aTc	1	1	B.1.509	0.000866
N	282	T282T	acC	acT	1	1	B.1.524	0.001406
N	282	T282I	aCc	aTc	1	1	B.1.526	0.000024
N	282	T282I	aCc	aTc	1	1	B.1.537	0.02
N	282	T282T	acC	acT	1	1	B.1.540	0.009709
N	282	T282T	acC	acT	1	1	B.1.545	0.014493
N	282	T282del	ACC	---	1	1	B.1.560	0.00463
N	282	T282I	aCc	aTc	1	1	B.1.561	0.000397
N	282	T282del	ACC	---	1	1	B.1.561	0.000397
N	282	T282T	acC	acT	1	1	B.1.568	0.001111
N	282	T282T	acC	acT	1	1	B.1.575	0.000303
N	282	T282T	acC	acT	1	1	B.1.577	0.000687
N	282	T282I	aCc	aTc	1	1	B.1.588	0.00091
N	282	T282T	acC	acT	1	1	B.1.588	0.00091
N	282	T282I	aCc	aTc	1	1	B.1.596	0.000087
N	282	T282T	acC	acT	1	1	B.1.596	0.000087
N	282	T282A	Acc	Gcc	1	1	B.1.617.2	0.000004
N	282	T282del	ACC	---	1	1	B.1.617.2	0.000004
N	282	T282I	aCc	aTc	1	1	B.1.620	0.000946
N	282	T282T	acC	acT	1	1	B.1.621	0.000089
N	282	T282T	acC	acT	1	1	B.1.628	0.000352
N	282	T282I	aCc	aTc	1	1	B.1.9.4	0.006135
N	282	T282del1	aCc	a-c	1	1	B.1.94	0.027027
N	282	T282T	acC	acT	1	1	B.40	0.000364
N	282	T282I	aCc	aTc	1	1	B.40	0.000364
N	282	T282T	acC	acA	1	1	B.6	0.00091
N	282	T282I	aCc	aTc	1	1	B.6	0.00091
N	282	T282T	acC	acT	1	1	C.16	0.00106
N	282	T282I	aCc	aTc	1	1	C.37	0.000116
N	282	T282T	acC	acT	1	1	P.1.17	0.000162
N	282	T282T	acC	acT	1	1	P.1.7	0.000319
N	282	T282T	acC	acT	1	1	P.2	0.000187
N	282	T282T	acC	acT	1	1	P.3	0.001595
N	282	T282S	Acc	Tcc	1	1	Q.4	0.000455
N	282	T282T	acC	acT	1	1	Q.7	0.001111
N	282	T282I	aCc	aTc	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.