CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 28

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N28Q28HnonsyncaGcaT182815800.86433328355-28357
N28Q28HnonsyncaGcaC18282480.13566728355-28357
N28Q28RnonsyncAgcGg12981298128355-28357
N28Q28QsyncaGcaA370370128355-28357
N28Q28KnonsynCagAag6060128355-28357
N28Q28deldelCAG---3535128355-28357
N28Q28EnonsynCagGag2222128355-28357
N28Q28LnonsyncAgcTg1717128355-28357
N28Q28XnonsynCagTag1414128355-28357
N28Q28PnonsyncAgcCg77128355-28357
N28Q28del1delcaGca-640.66666728355-28357
N28Q28del1delCag-ag610.16666728355-28357
N28Q28del1delCaGTa-610.16666728355-28357
N28Q28WnonsynCAgTGg11128355-28357
N28Q28SnonsynCAGTCA11128355-28357
N28Q28VnonsynCAGGTT11128355-28357
N28Q28del2delcAGc--11128355-28357

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N28Q28HcaGcaT15801828All0.000302
N28Q28HcaGcaC2481828All0.000047
N28Q28RcAgcGg12981298All0.000248
N28Q28RcAgcGg974974B.1.3510.028954
N28Q28HcaGcaT377607B.1.1.70.000337
N28Q28HcaGcaC230607B.1.1.70.000206
N28Q28QcaGcaA370370All0.000071
N28Q28HcaGcaT267270AY.40.000416
N28Q28HcaGcaC3270AY.40.000005
N28Q28RcAgcGg9696B.1.20.000845
N28Q28HcaGcaT9393B.1.5250.010524
N28Q28HcaGcaT7171AY.430.000315
N28Q28QcaGcaA6868B.1.10.001234
N28Q28KCagAag6060All0.000011
N28Q28HcaGcaT5656AY.1030.000348
N28Q28HcaGcaT5353B.1.177.810.010034
N28Q28HcaGcaT4546B.1.617.20.000169
N28Q28HcaGcaC146B.1.617.20.000004
N28Q28HcaGcaT4344AY.440.000262
N28Q28HcaGcaC144AY.440.000006
N28Q28QcaGcaA3838B.1.617.20.000143
N28Q28delCAG---3535All0.000007
N28Q28QcaGcaA3434AY.40.000053
N28Q28HcaGcaT3333AY.30.000328
N28Q28HcaGcaT3333B.1.3510.000981
N28Q28HcaGcaT2829B.1.20.000247
N28Q28HcaGcaC129B.1.20.000009
N28Q28HcaGcaT2828B.1.177.350.01935
N28Q28HcaGcaT2728P.10.000425
N28Q28HcaGcaC128P.10.000016
N28Q28HcaGcaT2727AY.630.010445
N28Q28RcAgcGg2727B.10.000247
N28Q28HcaGcaT2727B.1.5260.000635
N28Q28KCagAag2626B.1.4290.000612
N28Q28HcaGcaT2224B.10.000202
N28Q28HcaGcaC224B.10.000018
N28Q28HcaGcaT2424B.1.1770.000316
N28Q28HcaGcaT2323C.360.020947
N28Q28ECagGag2222All0.000004
N28Q28RcAgcGg2222C.40.22
N28Q28QcaGcaA2121B.1.1.70.000019
N28Q28HcaGcaT2121B.1.5960.00183
N28Q28RcAgcGg2020B.1.10.000363
N28Q28HcaGcaT1818AY.250.000108
N28Q28HcaGcaT1818AY.50.000372
N28Q28QcaGcaA1818B.1.3110.004942
N28Q28LcAgcTg1717All0.000003
N28Q28QcaGcaA1717AY.98.10.000823
N28Q28QcaGcaA1717B.1.2340.002243
N28Q28RcAgcGg1616B.1.6330.666667
N28Q28HcaGcaT1515AY.1130.002136
N28Q28QcaGcaA1515AY.1190.00053
N28Q28XCagTag1414All0.000003
N28Q28HcaGcaT1313B.1.1600.000405
N28Q28HcaGcaT1212AY.98.10.000581
N28Q28QcaGcaA1111AY.290.000174
N28Q28QcaGcaA1111AY.30.000109
N28Q28QcaGcaA1111AY.90.000744
N28Q28RcAgcGg1111B.1.1.70.00001
N28Q28RcAgcGg1010AY.40.000016
N28Q28HcaGcaT1010B.1.1.700.003411
N28Q28RcAgcGg1010B.1.4270.000505
N28Q28HcaGcaT99AY.290.000142
N28Q28HcaGcaT99AY.5.30.003036
N28Q28QcaGcaA99AY.610.000943
N28Q28HcaGcaT88AY.1180.000501
N28Q28QcaGcaA88AY.250.000048
N28Q28delCAG---88B.1.1.70.000007
N28Q28ECagGag88B.1.1490.027397
N28Q28HcaGcaT88B.1.5820.003925
N28Q28PcAgcCg77All0.000001
N28Q28KCagAag77AY.230.000488
N28Q28QcaGcaA77B.10.000064
N28Q28RcAgcGg77B.1.3460.009174
N28Q28del1caGca-46All0.000001
N28Q28del1Cag-ag16All0
N28Q28del1CaGTa-16All0
N28Q28HcaGcaT66AY.260.00017
N28Q28HcaGcaT66AY.280.011342
N28Q28RcAgcGg66AY.390.000148
N28Q28HcaGcaT66B.1.10.000109
N28Q28QcaGcaA66B.1.1.2840.000644
N28Q28HcaGcaT66B.1.4290.000141
N28Q28RcAgcGg66B.1.617.20.000023
N28Q28HcaGcaT55AY.1060.001674
N28Q28HcaGcaT55AY.420.000201
N28Q28HcaGcaT55AY.60.000206
N28Q28HcaGcaT55AY.620.002179
N28Q28LcAgcTg55B.1.10.000091
N28Q28RcAgcGg55B.1.1.10.001633
N28Q28HcaGcaT55B.1.1.2840.000537
N28Q28RcAgcGg55B.1.1.330.002104
N28Q28HcaGcaT35B.1.1.5190.000119
N28Q28HcaGcaC25B.1.1.5190.000079
N28Q28LcAgcTg55B.1.1.70.000004
N28Q28RcAgcGg55B.1.1110.005875
N28Q28QcaGcaA55B.1.1390.003666
N28Q28QcaGcaA55B.1.5610.001985
N28Q28RcAgcGg55B.1.90.030864
N28Q28HcaGcaT44AY.1020.000106
N28Q28HcaGcaT44AY.200.000155
N28Q28QcaGcaA44AY.360.000593
N28Q28RcAgcGg44AY.430.000018
N28Q28RcAgcGg44AY.440.000024
N28Q28QcaGcaA44AY.440.000024
N28Q28QcaGcaA44AY.640.002381
N28Q28HcaGcaT44AY.930.001092
N28Q28RcAgcGg44B.1.1.2770.003035
N28Q28HcaGcaT44B.1.177.510.018265
N28Q28HcaGcaT44B.1.360.000584
N28Q28RcAgcGg44B.1.5260.000094
N28Q28KCagAag44N.30.023256
N28Q28RcAgcGg33A.10.000846
N28Q28RcAgcGg33AY.250.000018
N28Q28HcaGcaT33AY.340.000291
N28Q28QcaGcaA33AY.390.000074
N28Q28delCAG---33AY.40.000005
N28Q28KCagAag33AY.40.000005
N28Q28HcaGcaT33AY.460.000312
N28Q28delCAG---33AY.50.000062
N28Q28RcAgcGg33B.1.1770.00004
N28Q28QcaGcaA33B.1.1770.00004
N28Q28QcaGcaA33B.1.177.650.001996
N28Q28RcAgcGg33B.1.360.000438
N28Q28RcAgcGg33B.1.4700.004213
N28Q28HcaGcaT33B.1.5170.001281
N28Q28QcaGcaA33B.1.5260.000071
N28Q28RcAgcGg33B.1.6230.001609
N28Q28HcaGcaT33B.1.6280.001057
N28Q28RcAgcGg22AY.1030.000012
N28Q28HcaGcaT22AY.140.000176
N28Q28LcAgcTg22AY.250.000012
N28Q28KCagAag22AY.250.000012
N28Q28QcaGcaA22AY.3.10.000171
N28Q28HcaGcaT22AY.330.000134
N28Q28QcaGcaA22AY.340.000194
N28Q28HcaGcaT22AY.390.000049
N28Q28PcAgcCg22AY.40.000003
N28Q28HcaGcaT22AY.4.20.000043
N28Q28delCAG---22AY.430.000009
N28Q28KCagAag22AY.430.000009
N28Q28QcaGcaA22AY.430.000009
N28Q28ECagGag22AY.470.000062
N28Q28RcAgcGg22AY.470.000062
N28Q28QcaGcaA22AY.590.001059
N28Q28ECagGag22AY.630.000774
N28Q28HcaGcaT22AY.750.000112
N28Q28ECagGag22AY.75.10.000361
N28Q28HcaGcaT22AY.75.10.000361
N28Q28QcaGcaA22AY.980.000158
N28Q28HcaGcaT22B0.000256
N28Q28RcAgcGg22B0.000256
N28Q28XCagTag22B.10.000018
N28Q28delCAG---22B.1.10.000036
N28Q28KCagAag22B.1.1.2320.00363
N28Q28RcAgcGg22B.1.1.2840.000215
N28Q28HcaGcaT22B.1.1.3060.000877
N28Q28HcaGcaC22B.1.1.3880.090909
N28Q28QcaGcaA22B.1.1.5180.012658
N28Q28QcaGcaA22B.1.1.5190.000079
N28Q28ECagGag22B.1.1.70.000002
N28Q28PcAgcCg22B.1.1.70.000002
N28Q28LcAgcTg22B.1.1770.000026
N28Q28HcaGcaT22B.1.177.40.000422
N28Q28KCagAag22B.1.177.440.001038
N28Q28HcaGcaT22B.1.177.80.001505
N28Q28RcAgcGg22B.1.2060.001631
N28Q28PcAgcCg22B.1.2390.002442
N28Q28HcaGcaT22B.1.2400.000431
N28Q28KCagAag22B.1.3960.001411
N28Q28HcaGcaT22B.1.4270.000101
N28Q28HcaGcaT22B.1.466.20.000782
N28Q28HcaGcaT22B.1.575.10.004878
N28Q28HcaGcaT22B.1.617.10.000258
N28Q28delCAG---22B.1.617.20.000008
N28Q28HcaGcaT22B.1.619.10.001283
N28Q28QcaGcaA22B.1.6250.004706
N28Q28HcaGcaT22B.450.007663
N28Q28QcaGcaA22P.10.000032
N28Q28QcaGcaA22P.20.000373
N28Q28HcaGcaC22Q.10.000253
N28Q28HcaGcaT22Q.40.00091
N28Q28QcaGcaA22W.40.002703
N28Q28RcAgcGg11A.20.000662
N28Q28QcaGcaA11A.2.40.003367
N28Q28WCAgTGg11All0
N28Q28SCAGTCA11All0
N28Q28del2cAGc--11All0
N28Q28VCAGGTT11All0
N28Q28HcaGcaT11AY.10.000396
N28Q28QcaGcaA11AY.1020.000027
N28Q28RcAgcGg11AY.1020.000027
N28Q28XCagTag11AY.1030.000006
N28Q28KCagAag11AY.1060.000335
N28Q28HcaGcaT11AY.1110.000183
N28Q28HcaGcaT11AY.1170.000085
N28Q28delCAG---11AY.1180.000063
N28Q28del1caGca-11AY.1180.000063
N28Q28HcaGcaT11AY.1190.000035
N28Q28HcaGcaT11AY.1200.000037
N28Q28delCAG---11AY.1200.000037
N28Q28QcaGcaA11AY.1210.000135
N28Q28HcaGcaT11AY.1210.000135
N28Q28RcAgcGg11AY.1210.000135
N28Q28HcaGcaT11AY.190.00114
N28Q28QcaGcaA11AY.230.00007
N28Q28ECagGag11AY.250.000006
N28Q28ECagGag11AY.260.000028
N28Q28HcaGcaT11AY.39.20.001541
N28Q28LcAgcTg11AY.40.000002
N28Q28ECagGag11AY.40.000002
N28Q28delCAG---11AY.4.40.000409
N28Q28RcAgcGg11AY.4.50.000107
N28Q28XCagTag11AY.430.000004
N28Q28delCAG---11AY.440.000006
N28Q28XCagTag11AY.440.000006
N28Q28delCAG---11AY.460.000104
N28Q28QcaGcaA11AY.460.000104
N28Q28delCAG---11AY.46.60.000072
N28Q28HcaGcaT11AY.470.000031
N28Q28QcaGcaA11AY.50.000021
N28Q28delCAG---11AY.5.30.000337
N28Q28HcaGcaT11AY.500.000799
N28Q28HcaGcaT11AY.520.000814
N28Q28HcaGcaT11AY.590.00053
N28Q28HcaGcaT11AY.610.000105
N28Q28HcaGcaT11AY.680.000274
N28Q28HcaGcaT11AY.690.000187
N28Q28HcaGcaT11AY.70.000196
N28Q28HcaGcaT11AY.7.10.000113
N28Q28RcAgcGg11AY.750.000056
N28Q28HcaGcaT11AY.90.000068
N28Q28RcAgcGg11AY.9.10.000084
N28Q28HcaGcaT11AY.9.20.000037
N28Q28ECagGag11AY.9.20.000037
N28Q28XCagTag11AY.960.002075
N28Q28HcaGcaT11AY.980.000079
N28Q28QcaGcaA11AY.99.10.001553
N28Q28RcAgcGg11AZ.20.000821
N28Q28RcAgcGg11AZ.2.10.00813
N28Q28QcaGcaA11B0.000128
N28Q28delCAG---11B.10.000009
N28Q28del1caGca-11B.10.000009
N28Q28KCagAag11B.1.10.000018
N28Q28QcaGcaA11B.1.1.1170.009709
N28Q28RcAgcGg11B.1.1.1210.002427
N28Q28delCAG---11B.1.1.1390.022727
N28Q28XCagTag11B.1.1.1740.003378
N28Q28HcaGcaT11B.1.1.2140.000055
N28Q28delCAG---11B.1.1.2160.00089
N28Q28RcAgcGg11B.1.1.2190.005
N28Q28KCagAag11B.1.1.2200.001859
N28Q28HcaGcaT11B.1.1.2220.000204
N28Q28RcAgcGg11B.1.1.2290.005747
N28Q28HcaGcaT11B.1.1.250.000569
N28Q28XCagTag11B.1.1.2550.00303
N28Q28HcaGcaT11B.1.1.2690.001353
N28Q28HcaGcaT11B.1.1.2880.001916
N28Q28KCagAag11B.1.1.2980.000862
N28Q28LcAgcTg11B.1.1.3060.000438
N28Q28RcAgcGg11B.1.1.3120.001912
N28Q28HcaGcaT11B.1.1.3170.000412
N28Q28HcaGcaT11B.1.1.3860.066667
N28Q28delCAG---11B.1.1.4200.001006
N28Q28QcaGcaA11B.1.1.4340.000349
N28Q28QcaGcaA11B.1.1.480.002874
N28Q28del1Cag-ag11B.1.1.70.000001
N28Q28del2cAGc--11B.1.1.70.000001
N28Q28RcAgcGg11B.1.1430.021277
N28Q28LcAgcTg11B.1.1600.000031
N28Q28RcAgcGg11B.1.1600.000031
N28Q28delCAG---11B.1.1600.000031
N28Q28KCagAag11B.1.160.140.002119
N28Q28XCagTag11B.1.1770.000013
N28Q28QcaGcaA11B.1.177.40.000211
N28Q28delCAG---11B.1.177.630.002703
N28Q28HcaGcaT11B.1.177.70.000165
N28Q28QcaGcaA11B.1.20.000009
N28Q28ECagGag11B.1.20.000009
N28Q28KCagAag11B.1.20.000009
N28Q28QcaGcaA11B.1.2210.000071
N28Q28HcaGcaT11B.1.2210.000071
N28Q28RcAgcGg11B.1.2340.000132
N28Q28QcaGcaA11B.1.2580.000067
N28Q28RcAgcGg11B.1.2580.000067
N28Q28HcaGcaT11B.1.2580.000067
N28Q28XCagTag11B.1.2600.003344
N28Q28HcaGcaT11B.1.3200.001245
N28Q28RcAgcGg11B.1.3440.008197
N28Q28ECagGag11B.1.3510.00003
N28Q28XCagTag11B.1.351.30.000876
N28Q28RcAgcGg11B.1.351.50.0006
N28Q28PcAgcCg11B.1.3610.001289
N28Q28XCagTag11B.1.3670.000792
N28Q28HcaGcaT11B.1.3690.000285
N28Q28HcaGcaC11B.1.3890.001002
N28Q28HcaGcaT11B.1.4160.001269
N28Q28QcaGcaA11B.1.4220.000812
N28Q28HcaGcaT11B.1.4220.000812
N28Q28QcaGcaA11B.1.4290.000024
N28Q28RcAgcGg11B.1.4290.000024
N28Q28delCAG---11B.1.4390.005917
N28Q28RcAgcGg11B.1.4910.052632
N28Q28KCagAag11B.1.5250.000113
N28Q28RcAgcGg11B.1.5330.009615
N28Q28HcaGcaT11B.1.5550.022222
N28Q28QcaGcaA11B.1.5580.004566
N28Q28delCAG---11B.1.5610.000397
N28Q28QcaGcaA11B.1.5650.00081
N28Q28RcAgcGg11B.1.5750.000303
N28Q28QcaGcaA11B.1.5750.000303
N28Q28HcaGcaT11B.1.5950.000261
N28Q28RcAgcGg11B.1.5950.000261
N28Q28del1caGca-11B.1.5960.000087
N28Q28RcAgcGg11B.1.5960.000087
N28Q28KCagAag11B.1.5960.000087
N28Q28HcaGcaT11B.1.6090.000479
N28Q28QcaGcaA11B.1.6120.002653
N28Q28del1caGca-11B.1.617.10.000129
N28Q28KCagAag11B.1.617.20.000004
N28Q28VCAGGTT11B.1.617.20.000004
N28Q28SCAGTCA11B.1.617.20.000004
N28Q28WCAgTGg11B.1.617.20.000004
N28Q28RcAgcGg11B.1.6200.000946
N28Q28HcaGcaT11B.1.6210.000089
N28Q28RcAgcGg11B.30.000831
N28Q28HcaGcaC11B.570.015152
N28Q28RcAgcGg11B.570.015152
N28Q28XCagTag11B.60.00091
N28Q28RcAgcGg11C.360.000911
N28Q28XCagTag11D.20.000075
N28Q28RcAgcGg11D.20.000075
N28Q28QcaGcaA11D.20.000075
N28Q28HcaGcaT11N.40.004255
N28Q28del1CaGTa-11P.10.000016
N28Q28KCagAag11P.10.000016
N28Q28HcaGcaT11P.1.140.000048
N28Q28HcaGcaT11P.1.70.000319
N28Q28HcaGcaT11Q.20.000613
N28Q28HcaGcaC11Q.80.000165
N28Q28QcaGcaA11R.10.00009