CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 271

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N271T271InonsynaCaaTa571857160.9996529084-29086
N271T271InonsynaCAaTT571820.00034977329084-29086
N271T271TsynacAacT4953340.67474729084-29086
N271T271TsynacAacG4951550.31313129084-29086
N271T271TsynacAacC49560.012121229084-29086
N271T271AnonsynAcaGca1131110.98230129084-29086
N271T271AnonsynAcAGcG11320.017699129084-29086
N271T271deldelACA---4040129084-29086
N271T271SnonsynAcaTca19180.94736829084-29086
N271T271SnonsynAcATcT1910.052631629084-29086
N271T271KnonsynaCaaAa77129084-29086
N271T271del2delACa--a760.85714329084-29086
N271T271del2delACA--T710.14285729084-29086
N271T271LnonsynACATTG33129084-29086
N271T271PnonsynAcaCca320.66666729084-29086
N271T271PnonsynAcACcT310.33333329084-29086
N271T271GnonsynACaGGa22129084-29086

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N271T271IaCaaTa57165718All0.001093
N271T271IaCAaTT25718All0
N271T271IaCaaTa23862386B.1.1.70.002136
N271T271TacAacT334495All0.000064
N271T271TacAacG155495All0.00003
N271T271TacAacC6495All0.000001
N271T271IaCaaTa387387AY.430.001715
N271T271IaCaaTa353355AY.40.000549
N271T271IaCAaTT2355AY.40.000003
N271T271IaCaaTa274274B.1.617.20.001032
N271T271IaCaaTa187187AY.740.021626
N271T271IaCaaTa182182B.1.20.001603
N271T271IaCaaTa179179AY.250.001077
N271T271IaCaaTa137137AY.440.000834
N271T271IaCaaTa135135B.1.177.70.022255
N271T271AAcaGca111113All0.000021
N271T271AAcAGcG2113All0
N271T271TacAacT104104AY.470.003235
N271T271IaCaaTa102102B.1.1770.001343
N271T271TacAacG6276B.1.1.70.000056
N271T271TacAacT1476B.1.1.70.000013
N271T271IaCaaTa7474AY.1030.000459
N271T271IaCaaTa7474B.1.1600.002308
N271T271IaCaaTa5555B.10.000504
N271T271IaCaaTa4848AY.1000.002208
N271T271IaCaaTa4545B.1.10.000816
N271T271delACA---4040All0.000008
N271T271IaCaaTa3939P.10.000614
N271T271IaCaaTa3737B.1.1.3760.220238
N271T271AAcaGca3737B.1.1.70.000033
N271T271IaCaaTa3737B.1.5960.003224
N271T271IaCaaTa3636B.1.617.10.004643
N271T271TacAacT3030AY.7.20.016779
N271T271TacAacG2830B.1.20.000247
N271T271TacAacT230B.1.20.000018
N271T271IaCaaTa2929AY.470.000902
N271T271TacAacT2727B.1.36.280.155172
N271T271IaCaaTa2626AY.290.00041
N271T271AAcaGca2626AY.40.00004
N271T271IaCaaTa2525AY.30.000249
N271T271IaCaaTa2525B.1.4070.892857
N271T271IaCaaTa2323B.1.1.390.011723
N271T271IaCaaTa2020AY.930.005461
N271T271IaCaaTa2020B.1.3510.000595
N271T271IaCaaTa2020B.1.5260.00047
N271T271SAcaTca1819All0.000003
N271T271SAcATcT119All0
N271T271IaCaaTa1919AY.20.006766
N271T271TacAacT1119AY.40.000017
N271T271TacAacG719AY.40.000011
N271T271TacAacC119AY.40.000002
N271T271IaCaaTa1919B.1.3690.005419
N271T271IaCaaTa1919B.1.4270.000959
N271T271IaCaaTa1818AY.270.001165
N271T271IaCaaTa1818AY.390.000445
N271T271IaCaaTa1818AY.450.00219
N271T271TacAacT1418B.1.617.20.000053
N271T271TacAacG418B.1.617.20.000015
N271T271IaCaaTa1616B.1.1.5190.000635
N271T271TacAacT1616B.6.21
N271T271IaCaaTa1616C.370.001857
N271T271IaCaaTa1616Q.80.002639
N271T271IaCaaTa1515B.1.4290.000353
N271T271IaCaaTa1414AY.1200.000521
N271T271IaCaaTa1212AY.1020.000318
N271T271IaCaaTa1212AY.120.2.10.005979
N271T271TacAacT1212AY.430.000053
N271T271TacAacT1012B.10.000092
N271T271TacAacG212B.10.000018
N271T271IaCaaTa1111AY.1190.000388
N271T271IaCaaTa1111AY.90.000744
N271T271IaCaaTa1111B.1.177.810.002083
N271T271TacAacT1111B.1.4290.000259
N271T271IaCaaTa1010AY.100.005299
N271T271IaCaaTa1010AY.260.000283
N271T271IaCaaTa1010AY.750.00056
N271T271IaCaaTa1010B.1.2430.000696
N271T271TacAacT59AY.1030.000031
N271T271TacAacG49AY.1030.000025
N271T271SAcaTca99B.1.4290.000212
N271T271IaCaaTa88AY.330.000534
N271T271IaCaaTa88AY.4.20.000174
N271T271TacAacT88AY.730.005323
N271T271IaCaaTa88B.1.1.2140.000444
N271T271IaCaaTa88B.1.1.2220.001632
N271T271IaCaaTa88P.1.10.002541
N271T271KaCaaAa77All0.000001
N271T271del2ACa--a67All0.000001
N271T271del2ACA--T17All0
N271T271IaCaaTa77AY.1180.000439
N271T271IaCaaTa77AY.420.000282
N271T271IaCaaTa77AY.900.004791
N271T271IaCaaTa77B.1.177.570.001967
N271T271IaCaaTa77B.1.360.001021
N271T271IaCaaTa77B.1.6280.002467
N271T271IaCaaTa66AE.80.002934
N271T271IaCaaTa66AY.1170.000507
N271T271TacAacG36AY.1200.000112
N271T271TacAacT36AY.1200.000112
N271T271IaCaaTa66AY.230.000418
N271T271TacAacT66AY.440.000037
N271T271IaCaaTa66AY.60.000247
N271T271TacAacG66B.1.1.5190.000238
N271T271TacAacG66B.1.177.210.000459
N271T271IaCaaTa66B.1.177.830.008889
N271T271AAcaGca66B.1.20.000053
N271T271IaCaaTa66B.1.2210.000426
N271T271IaCaaTa66B.1.2580.000399
N271T271AAcaGca66B.1.36.170.002964
N271T271IaCaaTa55AY.1010.002452
N271T271delACA---55AY.250.00003
N271T271IaCaaTa55AY.350.001165
N271T271IaCaaTa55AY.46.30.004669
N271T271IaCaaTa55AY.50.000103
N271T271AAcaGca55B.10.000046
N271T271IaCaaTa55B.1.1.1890.007564
N271T271TacAacG55B.1.1.3060.002192
N271T271TacAacG45B.1.1770.000053
N271T271TacAacC15B.1.1770.000013
N271T271IaCaaTa55B.1.214.30.035714
N271T271TacAacT55B.1.2210.000355
N271T271TacAacG55B.1.36.290.002587
N271T271IaCaaTa55B.1.4800.012438
N271T271IaCaaTa55B.1.5950.001305
N271T271IaCaaTa55B.1.6370.000365
N271T271IaCaaTa55P.1.140.000239
N271T271IaCaaTa55P.1.160.001871
N271T271IaCaaTa55P.1.170.000809
N271T271delACA---440.222222
N271T271AAcaGca44AY.120.10.001284
N271T271TacAacT34AY.250.000018
N271T271TacAacG14AY.250.000006
N271T271TacAacG34AY.260.000085
N271T271TacAacT14AY.260.000028
N271T271delACA---44AY.270.000259
N271T271TacAacT34AY.290.000047
N271T271TacAacG14AY.290.000016
N271T271IaCaaTa44AY.3.10.000341
N271T271delACA---44B.10.000037
N271T271AAcaGca44B.1.10.000073
N271T271IaCaaTa44B.1.1.3180.001207
N271T271IaCaaTa44B.1.177.350.002764
N271T271IaCaaTa44B.1.177.80.00301
N271T271IaCaaTa44B.1.177.870.002911
N271T271IaCaaTa44B.1.2360.008214
N271T271IaCaaTa44B.1.258.170.000416
N271T271IaCaaTa44B.1.3950.028169
N271T271IaCaaTa44B.1.466.20.001565
N271T271IaCaaTa44B.1.6270.008081
N271T271IaCaaTa44D.20.0003
N271T271IaCaaTa44P.20.000747
N271T271LACATTG33All0.000001
N271T271PAcaCca23All0
N271T271PAcACcT13All0
N271T271IaCaaTa33AY.1060.001005
N271T271IaCaaTa33AY.1100.000338
N271T271TacAacT33AY.210.005693
N271T271TacAacT23AY.3.10.000171
N271T271TacAacG13AY.3.10.000085
N271T271IaCaaTa33AY.46.40.000494
N271T271IaCaaTa33AY.670.001393
N271T271IaCaaTa33AY.7.10.000338
N271T271IaCaaTa33AY.9.20.00011
N271T271IaCaaTa33B.1.1.2160.002671
N271T271IaCaaTa33B.1.1.280.000934
N271T271TacAacG33B.1.160.170.005102
N271T271IaCaaTa33B.1.177.210.000229
N271T271IaCaaTa33B.1.177.430.004431
N271T271IaCaaTa33B.1.177.440.001557
N271T271IaCaaTa33B.1.177.600.000655
N271T271IaCaaTa33B.1.2410.002435
N271T271IaCaaTa33B.1.2980.006342
N271T271TacAacG33B.1.3690.000856
N271T271IaCaaTa33B.1.3750.002459
N271T271IaCaaTa33B.1.3980.008929
N271T271AAcaGca33B.1.4290.000071
N271T271IaCaaTa33B.1.438.10.000322
N271T271IaCaaTa33B.1.619.10.001924
N271T271IaCaaTa33B.1.6210.000266
N271T271IaCaaTa33B.60.00273
N271T271IaCaaTa33P.1.120.001452
N271T271IaCaaTa33Q.70.003333
N271T271IaCaaTa33R.10.00027
N271T271GACaGGa220.111111
N271T271IaCaaTa22A0.000774
N271T271IaCaaTa22A.10.000564
N271T271GACaGGa22All0
N271T271delACA---22AY.1000.000092
N271T271TacAacT22AY.1000.000092
N271T271AAcaGca22AY.1060.00067
N271T271IaCaaTa22AY.1080.002205
N271T271IaCaaTa22AY.1140.000462
N271T271IaCaaTa22AY.120.000632
N271T271IaCaaTa22AY.1210.000271
N271T271IaCaaTa22AY.240.000862
N271T271KaCaaAa22AY.290.000032
N271T271IaCaaTa22AY.340.000194
N271T271IaCaaTa22AY.4.30.001684
N271T271delACA---22AY.430.000009
N271T271SAcaTca22AY.470.000062
N271T271TacAacT22AY.480.00093
N271T271PAcaCca12AY.590.00053
N271T271PAcACcT12AY.590.00053
N271T271IaCaaTa22AY.620.000871
N271T271IaCaaTa22AY.710.00095
N271T271TacAacT22AY.750.000112
N271T271TacAacT22AY.880.001768
N271T271IaCaaTa22AY.9.10.000167
N271T271TacAacT22AY.920.000575
N271T271IaCaaTa22AY.920.000575
N271T271IaCaaTa22AY.980.000158
N271T271IaCaaTa22AY.99.20.000184
N271T271KaCaaAa22B.10.000018
N271T271delACA---22B.1.10.000036
N271T271IaCaaTa22B.1.1.1090.08
N271T271IaCaaTa22B.1.1.1760.000879
N271T271AAcaGca22B.1.1.2140.000111
N271T271IaCaaTa22B.1.1.2650.006309
N271T271IaCaaTa22B.1.1.2690.002706
N271T271IaCaaTa22B.1.1.3060.000877
N271T271IaCaaTa22B.1.1.3170.000823
N271T271IaCaaTa22B.1.1.370.000386
N271T271AAcaGca22B.1.1.500.001358
N271T271delACA---22B.1.1.70.000002
N271T271IaCaaTa22B.1.1580.047619
N271T271IaCaaTa22B.1.177.170.001642
N271T271IaCaaTa22B.1.177.40.000422
N271T271IaCaaTa22B.1.177.750.002081
N271T271IaCaaTa22B.1.177.860.000367
N271T271KaCaaAa22B.1.20.000018
N271T271IaCaaTa22B.1.2450.0625
N271T271IaCaaTa22B.1.2790.001027
N271T271IaCaaTa22B.1.3360.004878
N271T271SAcaTca22B.1.3510.000059
N271T271TacAacT22B.1.3510.000059
N271T271IaCaaTa22B.1.4030.006536
N271T271IaCaaTa22B.1.4760.2
N271T271IaCaaTa22B.1.5250.000226
N271T271IaCaaTa22B.1.5640.000852
N271T271TacAacT22B.1.5820.000981
N271T271TacAacT22B.1.5960.000174
N271T271IaCaaTa22B.1.6090.000959
N271T271delACA---22B.1.617.20.000008
N271T271IaCaaTa22B.1.6180.008065
N271T271TacAacT22B.1.6210.000177
N271T271IaCaaTa22P.1.70.000639
N271T271IaCaaTa11A.2.20.001689
N271T271IaCaaTa11A.2.50.000499
N271T271IaCaaTa11A.30.002096
N271T271TacAacT11AD.10.004115
N271T271IaCaaTa11AT.10.005128
N271T271IaCaaTa11AY.10.000396
N271T271TacAacT11AY.1010.00049
N271T271TacAacC11AY.1020.000027
N271T271TacAacT11AY.1070.000466
N271T271delACA---11AY.1070.000466
N271T271IaCaaTa11AY.1090.00074
N271T271IaCaaTa11AY.1130.000142
N271T271IaCaaTa11AY.1160.000287
N271T271TacAacT11AY.1190.000035
N271T271TacAacG11AY.120.000316
N271T271AAcaGca11AY.1200.000037
N271T271IaCaaTa11AY.130.000161
N271T271TacAacG11AY.140.000088
N271T271IaCaaTa11AY.160.00038
N271T271TacAacT11AY.20.000356
N271T271AAcaGca11AY.200.000039
N271T271IaCaaTa11AY.200.000039
N271T271TacAacG11AY.200.000039
N271T271AAcAGcG11AY.230.00007
N271T271LACATTG11AY.230.00007
N271T271IaCaaTa11AY.23.10.000417
N271T271SAcaTca11AY.250.000006
N271T271KaCaaAa11AY.260.000028
N271T271SAcaTca11AY.260.000028
N271T271IaCaaTa11AY.29.10.000221
N271T271delACA---11AY.30.00001
N271T271TacAacT11AY.30.00001
N271T271IaCaaTa11AY.300.000396
N271T271TacAacT11AY.330.000067
N271T271IaCaaTa11AY.34.10.00051
N271T271IaCaaTa11AY.370.000316
N271T271TacAacT11AY.380.000499
N271T271IaCaaTa11AY.380.000499
N271T271AAcaGca11AY.390.000025
N271T271TacAacC11AY.390.000025
N271T271delACA---11AY.390.000025
N271T271TacAacG11AY.4.20.000022
N271T271IaCaaTa11AY.4.2.10.000149
N271T271IaCaaTa11AY.4.50.000107
N271T271del2ACa--a11AY.430.000004
N271T271AAcAGcG11AY.430.000004
N271T271AAcaGca11AY.440.000006
N271T271PAcaCca11AY.440.000006
N271T271IaCaaTa11AY.46.10.001027
N271T271TacAacT11AY.46.40.000165
N271T271IaCaaTa11AY.46.50.000198
N271T271IaCaaTa11AY.5.30.000337
N271T271IaCaaTa11AY.540.000095
N271T271TacAacT11AY.540.000095
N271T271IaCaaTa11AY.550.000917
N271T271TacAacT11AY.590.00053
N271T271IaCaaTa11AY.610.000105
N271T271AAcaGca11AY.620.000436
N271T271TacAacT11AY.650.000533
N271T271delACA---11AY.670.000464
N271T271IaCaaTa11AY.690.000187
N271T271delACA---11AY.750.000056
N271T271TacAacT11AY.75.10.00018
N271T271TacAacT11AY.840.000437
N271T271IaCaaTa11AY.880.000884
N271T271AAcaGca11AY.9.10.000084
N271T271TacAacT11AY.9.20.000037
N271T271IaCaaTa11AY.98.10.000048
N271T271IaCaaTa11AY.99.10.001553
N271T271TacAacT11AY.99.20.000092
N271T271IaCaaTa11AZ.20.000821
N271T271LACATTG11B.10.000009
N271T271TacAacT11B.1.10.000018
N271T271delACA---11B.1.1.1150.008929
N271T271IaCaaTa11B.1.1.1700.001247
N271T271IaCaaTa11B.1.1.1980.001468
N271T271IaCaaTa11B.1.1.2280.003049
N271T271IaCaaTa11B.1.1.250.000569
N271T271TacAacT11B.1.1.250.000569
N271T271IaCaaTa11B.1.1.2510.007937
N271T271SAcATcT11B.1.1.270.00565
N271T271IaCaaTa11B.1.1.2770.000759
N271T271TacAacT11B.1.1.2820.011628
N271T271IaCaaTa11B.1.1.2840.000107
N271T271SAcaTca11B.1.1.2940.001266
N271T271IaCaaTa11B.1.1.3110.000358
N271T271IaCaaTa11B.1.1.3160.000925
N271T271AAcaGca11B.1.1.3180.000302
N271T271IaCaaTa11B.1.1.330.000421
N271T271IaCaaTa11B.1.1.3690.000446
N271T271TacAacT11B.1.1.3970.002252
N271T271AAcaGca11B.1.1.4090.002833
N271T271IaCaaTa11B.1.1.4120.007634
N271T271TacAacC11B.1.1.4480.002033
N271T271TacAacT11B.1.1.460.004367
N271T271IaCaaTa11B.1.1.500.000679
N271T271AAcaGca11B.1.1.5190.00004
N271T271IaCaaTa11B.1.1.5230.001563
N271T271IaCaaTa11B.1.1.830.00271
N271T271IaCaaTa11B.1.1280.000635
N271T271IaCaaTa11B.1.1470.000756
N271T271IaCaaTa11B.1.160.140.002119
N271T271IaCaaTa11B.1.160.150.00495
N271T271AAcaGca11B.1.1770.000013
N271T271IaCaaTa11B.1.177.120.000152
N271T271IaCaaTa11B.1.177.150.000631
N271T271IaCaaTa11B.1.177.290.066667
N271T271IaCaaTa11B.1.177.330.001645
N271T271IaCaaTa11B.1.177.420.000894
N271T271IaCaaTa11B.1.177.550.002331
N271T271del2ACA--T11B.1.177.630.002703
N271T271IaCaaTa11B.1.177.630.002703
N271T271IaCaaTa11B.1.177.820.000477
N271T271delACA---11B.1.177.830.001481
N271T271IaCaaTa11B.1.1890.004292
N271T271delACA---11B.1.20.000009
N271T271IaCaaTa11B.1.2180.005155
N271T271IaCaaTa11B.1.221.10.002907
N271T271IaCaaTa11B.1.2340.000132
N271T271IaCaaTa11B.1.2400.000216
N271T271TacAacG11B.1.2410.000812
N271T271IaCaaTa11B.1.258.140.00098
N271T271TacAacT11B.1.258.170.000104
N271T271IaCaaTa11B.1.3110.000275
N271T271IaCaaTa11B.1.3150.006061
N271T271IaCaaTa11B.1.3250.006897
N271T271delACA---11B.1.3510.00003
N271T271IaCaaTa11B.1.351.20.000303
N271T271del2ACa--a11B.1.3550.011111
N271T271TacAacT11B.1.360.000146
N271T271IaCaaTa11B.1.36.10.00114
N271T271IaCaaTa11B.1.36.100.004785
N271T271IaCaaTa11B.1.36.160.001425
N271T271IaCaaTa11B.1.36.180.00042
N271T271IaCaaTa11B.1.36.290.000517
N271T271IaCaaTa11B.1.36.80.001
N271T271AAcaGca11B.1.3750.00082
N271T271IaCaaTa11B.1.3810.007812
N271T271IaCaaTa11B.1.3960.000706
N271T271IaCaaTa11B.1.4090.000781
N271T271TacAacT11B.1.4270.00005
N271T271del2ACa--a11B.1.4290.000024
N271T271delACA---11B.1.4390.005917
N271T271IaCaaTa11B.1.4480.002625
N271T271TacAacT11B.1.4620.007246
N271T271IaCaaTa11B.1.4620.007246
N271T271TacAacC11B.1.466.20.000391
N271T271IaCaaTa11B.1.5030.002488
N271T271IaCaaTa11B.1.5410.004425
N271T271IaCaaTa11B.1.5560.007519
N271T271delACA---11B.1.5600.00463
N271T271IaCaaTa11B.1.5610.000397
N271T271IaCaaTa11B.1.5770.000687
N271T271del2ACa--a11B.1.5820.000491
N271T271IaCaaTa11B.1.5820.000491
N271T271IaCaaTa11B.1.5850.027778
N271T271IaCaaTa11B.1.5880.00091
N271T271IaCaaTa11B.1.5990.00365
N271T271AAcaGca11B.1.617.10.000129
N271T271LACATTG11B.1.617.10.000129
N271T271SAcaTca11B.1.617.20.000004
N271T271del2ACa--a11B.1.617.20.000004
N271T271delACA---11B.1.6210.000089
N271T271IaCaaTa11B.1.621.10.000506
N271T271IaCaaTa11B.1.6320.006711
N271T271IaCaaTa11B.1.9.40.006135
N271T271IaCaaTa11B.1.930.000934
N271T271IaCaaTa11B.30.000831
N271T271IaCaaTa11C.10.002392
N271T271IaCaaTa11C.36.30.000567
N271T271TacAacG11C.370.000116
N271T271IaCaaTa11C.37.10.002618
N271T271IaCaaTa11C.80.004464
N271T271TacAacG11D.20.000075
N271T271SAcaTca11D.20.000075
N271T271delACA---11D.20.000075
N271T271AAcaGca11P.1.130.000898
N271T271AAcaGca11P.1.150.000232
N271T271IaCaaTa11P.1.150.000232
N271T271del2ACa--a11P.1.150.000232
N271T271IaCaaTa11P.1.20.001156
N271T271IaCaaTa11P.60.003145
N271T271TacAacT11P.70.004367
N271T271IaCaaTa11Q.10.000126
N271T271IaCaaTa11W.10.008696