CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 271 | T271I | nonsyn | aCa | aTa | 5718 | 5716 | 0.99965 | 29084-29086 | |
N | 271 | T271I | nonsyn | aCA | aTT | 5718 | 2 | 0.000349773 | 29084-29086 | |
N | 271 | T271T | syn | acA | acT | 495 | 334 | 0.674747 | 29084-29086 | |
N | 271 | T271T | syn | acA | acG | 495 | 155 | 0.313131 | 29084-29086 | |
N | 271 | T271T | syn | acA | acC | 495 | 6 | 0.0121212 | 29084-29086 | |
N | 271 | T271A | nonsyn | Aca | Gca | 113 | 111 | 0.982301 | 29084-29086 | |
N | 271 | T271A | nonsyn | AcA | GcG | 113 | 2 | 0.0176991 | 29084-29086 | |
N | 271 | T271del | del | ACA | --- | 40 | 40 | 1 | 29084-29086 | |
N | 271 | T271S | nonsyn | Aca | Tca | 19 | 18 | 0.947368 | 29084-29086 | |
N | 271 | T271S | nonsyn | AcA | TcT | 19 | 1 | 0.0526316 | 29084-29086 | |
N | 271 | T271K | nonsyn | aCa | aAa | 7 | 7 | 1 | 29084-29086 | |
N | 271 | T271del2 | del | ACa | --a | 7 | 6 | 0.857143 | 29084-29086 | |
N | 271 | T271del2 | del | ACA | --T | 7 | 1 | 0.142857 | 29084-29086 | |
N | 271 | T271L | nonsyn | ACA | TTG | 3 | 3 | 1 | 29084-29086 | |
N | 271 | T271P | nonsyn | Aca | Cca | 3 | 2 | 0.666667 | 29084-29086 | |
N | 271 | T271P | nonsyn | AcA | CcT | 3 | 1 | 0.333333 | 29084-29086 | |
N | 271 | T271G | nonsyn | ACa | GGa | 2 | 2 | 1 | 29084-29086 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 271 | T271I | aCa | aTa | 5716 | 5718 | All | 0.001093 |
N | 271 | T271I | aCA | aTT | 2 | 5718 | All | 0 |
N | 271 | T271I | aCa | aTa | 2386 | 2386 | B.1.1.7 | 0.002136 |
N | 271 | T271T | acA | acT | 334 | 495 | All | 0.000064 |
N | 271 | T271T | acA | acG | 155 | 495 | All | 0.00003 |
N | 271 | T271T | acA | acC | 6 | 495 | All | 0.000001 |
N | 271 | T271I | aCa | aTa | 387 | 387 | AY.43 | 0.001715 |
N | 271 | T271I | aCa | aTa | 353 | 355 | AY.4 | 0.000549 |
N | 271 | T271I | aCA | aTT | 2 | 355 | AY.4 | 0.000003 |
N | 271 | T271I | aCa | aTa | 274 | 274 | B.1.617.2 | 0.001032 |
N | 271 | T271I | aCa | aTa | 187 | 187 | AY.74 | 0.021626 |
N | 271 | T271I | aCa | aTa | 182 | 182 | B.1.2 | 0.001603 |
N | 271 | T271I | aCa | aTa | 179 | 179 | AY.25 | 0.001077 |
N | 271 | T271I | aCa | aTa | 137 | 137 | AY.44 | 0.000834 |
N | 271 | T271I | aCa | aTa | 135 | 135 | B.1.177.7 | 0.022255 |
N | 271 | T271A | Aca | Gca | 111 | 113 | All | 0.000021 |
N | 271 | T271A | AcA | GcG | 2 | 113 | All | 0 |
N | 271 | T271T | acA | acT | 104 | 104 | AY.47 | 0.003235 |
N | 271 | T271I | aCa | aTa | 102 | 102 | B.1.177 | 0.001343 |
N | 271 | T271T | acA | acG | 62 | 76 | B.1.1.7 | 0.000056 |
N | 271 | T271T | acA | acT | 14 | 76 | B.1.1.7 | 0.000013 |
N | 271 | T271I | aCa | aTa | 74 | 74 | AY.103 | 0.000459 |
N | 271 | T271I | aCa | aTa | 74 | 74 | B.1.160 | 0.002308 |
N | 271 | T271I | aCa | aTa | 55 | 55 | B.1 | 0.000504 |
N | 271 | T271I | aCa | aTa | 48 | 48 | AY.100 | 0.002208 |
N | 271 | T271I | aCa | aTa | 45 | 45 | B.1.1 | 0.000816 |
N | 271 | T271del | ACA | --- | 40 | 40 | All | 0.000008 |
N | 271 | T271I | aCa | aTa | 39 | 39 | P.1 | 0.000614 |
N | 271 | T271I | aCa | aTa | 37 | 37 | B.1.1.376 | 0.220238 |
N | 271 | T271A | Aca | Gca | 37 | 37 | B.1.1.7 | 0.000033 |
N | 271 | T271I | aCa | aTa | 37 | 37 | B.1.596 | 0.003224 |
N | 271 | T271I | aCa | aTa | 36 | 36 | B.1.617.1 | 0.004643 |
N | 271 | T271T | acA | acT | 30 | 30 | AY.7.2 | 0.016779 |
N | 271 | T271T | acA | acG | 28 | 30 | B.1.2 | 0.000247 |
N | 271 | T271T | acA | acT | 2 | 30 | B.1.2 | 0.000018 |
N | 271 | T271I | aCa | aTa | 29 | 29 | AY.47 | 0.000902 |
N | 271 | T271T | acA | acT | 27 | 27 | B.1.36.28 | 0.155172 |
N | 271 | T271I | aCa | aTa | 26 | 26 | AY.29 | 0.00041 |
N | 271 | T271A | Aca | Gca | 26 | 26 | AY.4 | 0.00004 |
N | 271 | T271I | aCa | aTa | 25 | 25 | AY.3 | 0.000249 |
N | 271 | T271I | aCa | aTa | 25 | 25 | B.1.407 | 0.892857 |
N | 271 | T271I | aCa | aTa | 23 | 23 | B.1.1.39 | 0.011723 |
N | 271 | T271I | aCa | aTa | 20 | 20 | AY.93 | 0.005461 |
N | 271 | T271I | aCa | aTa | 20 | 20 | B.1.351 | 0.000595 |
N | 271 | T271I | aCa | aTa | 20 | 20 | B.1.526 | 0.00047 |
N | 271 | T271S | Aca | Tca | 18 | 19 | All | 0.000003 |
N | 271 | T271S | AcA | TcT | 1 | 19 | All | 0 |
N | 271 | T271I | aCa | aTa | 19 | 19 | AY.2 | 0.006766 |
N | 271 | T271T | acA | acT | 11 | 19 | AY.4 | 0.000017 |
N | 271 | T271T | acA | acG | 7 | 19 | AY.4 | 0.000011 |
N | 271 | T271T | acA | acC | 1 | 19 | AY.4 | 0.000002 |
N | 271 | T271I | aCa | aTa | 19 | 19 | B.1.369 | 0.005419 |
N | 271 | T271I | aCa | aTa | 19 | 19 | B.1.427 | 0.000959 |
N | 271 | T271I | aCa | aTa | 18 | 18 | AY.27 | 0.001165 |
N | 271 | T271I | aCa | aTa | 18 | 18 | AY.39 | 0.000445 |
N | 271 | T271I | aCa | aTa | 18 | 18 | AY.45 | 0.00219 |
N | 271 | T271T | acA | acT | 14 | 18 | B.1.617.2 | 0.000053 |
N | 271 | T271T | acA | acG | 4 | 18 | B.1.617.2 | 0.000015 |
N | 271 | T271I | aCa | aTa | 16 | 16 | B.1.1.519 | 0.000635 |
N | 271 | T271T | acA | acT | 16 | 16 | B.6.2 | 1 |
N | 271 | T271I | aCa | aTa | 16 | 16 | C.37 | 0.001857 |
N | 271 | T271I | aCa | aTa | 16 | 16 | Q.8 | 0.002639 |
N | 271 | T271I | aCa | aTa | 15 | 15 | B.1.429 | 0.000353 |
N | 271 | T271I | aCa | aTa | 14 | 14 | AY.120 | 0.000521 |
N | 271 | T271I | aCa | aTa | 12 | 12 | AY.102 | 0.000318 |
N | 271 | T271I | aCa | aTa | 12 | 12 | AY.120.2.1 | 0.005979 |
N | 271 | T271T | acA | acT | 12 | 12 | AY.43 | 0.000053 |
N | 271 | T271T | acA | acT | 10 | 12 | B.1 | 0.000092 |
N | 271 | T271T | acA | acG | 2 | 12 | B.1 | 0.000018 |
N | 271 | T271I | aCa | aTa | 11 | 11 | AY.119 | 0.000388 |
N | 271 | T271I | aCa | aTa | 11 | 11 | AY.9 | 0.000744 |
N | 271 | T271I | aCa | aTa | 11 | 11 | B.1.177.81 | 0.002083 |
N | 271 | T271T | acA | acT | 11 | 11 | B.1.429 | 0.000259 |
N | 271 | T271I | aCa | aTa | 10 | 10 | AY.10 | 0.005299 |
N | 271 | T271I | aCa | aTa | 10 | 10 | AY.26 | 0.000283 |
N | 271 | T271I | aCa | aTa | 10 | 10 | AY.75 | 0.00056 |
N | 271 | T271I | aCa | aTa | 10 | 10 | B.1.243 | 0.000696 |
N | 271 | T271T | acA | acT | 5 | 9 | AY.103 | 0.000031 |
N | 271 | T271T | acA | acG | 4 | 9 | AY.103 | 0.000025 |
N | 271 | T271S | Aca | Tca | 9 | 9 | B.1.429 | 0.000212 |
N | 271 | T271I | aCa | aTa | 8 | 8 | AY.33 | 0.000534 |
N | 271 | T271I | aCa | aTa | 8 | 8 | AY.4.2 | 0.000174 |
N | 271 | T271T | acA | acT | 8 | 8 | AY.73 | 0.005323 |
N | 271 | T271I | aCa | aTa | 8 | 8 | B.1.1.214 | 0.000444 |
N | 271 | T271I | aCa | aTa | 8 | 8 | B.1.1.222 | 0.001632 |
N | 271 | T271I | aCa | aTa | 8 | 8 | P.1.1 | 0.002541 |
N | 271 | T271K | aCa | aAa | 7 | 7 | All | 0.000001 |
N | 271 | T271del2 | ACa | --a | 6 | 7 | All | 0.000001 |
N | 271 | T271del2 | ACA | --T | 1 | 7 | All | 0 |
N | 271 | T271I | aCa | aTa | 7 | 7 | AY.118 | 0.000439 |
N | 271 | T271I | aCa | aTa | 7 | 7 | AY.42 | 0.000282 |
N | 271 | T271I | aCa | aTa | 7 | 7 | AY.90 | 0.004791 |
N | 271 | T271I | aCa | aTa | 7 | 7 | B.1.177.57 | 0.001967 |
N | 271 | T271I | aCa | aTa | 7 | 7 | B.1.36 | 0.001021 |
N | 271 | T271I | aCa | aTa | 7 | 7 | B.1.628 | 0.002467 |
N | 271 | T271I | aCa | aTa | 6 | 6 | AE.8 | 0.002934 |
N | 271 | T271I | aCa | aTa | 6 | 6 | AY.117 | 0.000507 |
N | 271 | T271T | acA | acG | 3 | 6 | AY.120 | 0.000112 |
N | 271 | T271T | acA | acT | 3 | 6 | AY.120 | 0.000112 |
N | 271 | T271I | aCa | aTa | 6 | 6 | AY.23 | 0.000418 |
N | 271 | T271T | acA | acT | 6 | 6 | AY.44 | 0.000037 |
N | 271 | T271I | aCa | aTa | 6 | 6 | AY.6 | 0.000247 |
N | 271 | T271T | acA | acG | 6 | 6 | B.1.1.519 | 0.000238 |
N | 271 | T271T | acA | acG | 6 | 6 | B.1.177.21 | 0.000459 |
N | 271 | T271I | aCa | aTa | 6 | 6 | B.1.177.83 | 0.008889 |
N | 271 | T271A | Aca | Gca | 6 | 6 | B.1.2 | 0.000053 |
N | 271 | T271I | aCa | aTa | 6 | 6 | B.1.221 | 0.000426 |
N | 271 | T271I | aCa | aTa | 6 | 6 | B.1.258 | 0.000399 |
N | 271 | T271A | Aca | Gca | 6 | 6 | B.1.36.17 | 0.002964 |
N | 271 | T271I | aCa | aTa | 5 | 5 | AY.101 | 0.002452 |
N | 271 | T271del | ACA | --- | 5 | 5 | AY.25 | 0.00003 |
N | 271 | T271I | aCa | aTa | 5 | 5 | AY.35 | 0.001165 |
N | 271 | T271I | aCa | aTa | 5 | 5 | AY.46.3 | 0.004669 |
N | 271 | T271I | aCa | aTa | 5 | 5 | AY.5 | 0.000103 |
N | 271 | T271A | Aca | Gca | 5 | 5 | B.1 | 0.000046 |
N | 271 | T271I | aCa | aTa | 5 | 5 | B.1.1.189 | 0.007564 |
N | 271 | T271T | acA | acG | 5 | 5 | B.1.1.306 | 0.002192 |
N | 271 | T271T | acA | acG | 4 | 5 | B.1.177 | 0.000053 |
N | 271 | T271T | acA | acC | 1 | 5 | B.1.177 | 0.000013 |
N | 271 | T271I | aCa | aTa | 5 | 5 | B.1.214.3 | 0.035714 |
N | 271 | T271T | acA | acT | 5 | 5 | B.1.221 | 0.000355 |
N | 271 | T271T | acA | acG | 5 | 5 | B.1.36.29 | 0.002587 |
N | 271 | T271I | aCa | aTa | 5 | 5 | B.1.480 | 0.012438 |
N | 271 | T271I | aCa | aTa | 5 | 5 | B.1.595 | 0.001305 |
N | 271 | T271I | aCa | aTa | 5 | 5 | B.1.637 | 0.000365 |
N | 271 | T271I | aCa | aTa | 5 | 5 | P.1.14 | 0.000239 |
N | 271 | T271I | aCa | aTa | 5 | 5 | P.1.16 | 0.001871 |
N | 271 | T271I | aCa | aTa | 5 | 5 | P.1.17 | 0.000809 |
N | 271 | T271del | ACA | --- | 4 | 4 | 0.222222 | |
N | 271 | T271A | Aca | Gca | 4 | 4 | AY.120.1 | 0.001284 |
N | 271 | T271T | acA | acT | 3 | 4 | AY.25 | 0.000018 |
N | 271 | T271T | acA | acG | 1 | 4 | AY.25 | 0.000006 |
N | 271 | T271T | acA | acG | 3 | 4 | AY.26 | 0.000085 |
N | 271 | T271T | acA | acT | 1 | 4 | AY.26 | 0.000028 |
N | 271 | T271del | ACA | --- | 4 | 4 | AY.27 | 0.000259 |
N | 271 | T271T | acA | acT | 3 | 4 | AY.29 | 0.000047 |
N | 271 | T271T | acA | acG | 1 | 4 | AY.29 | 0.000016 |
N | 271 | T271I | aCa | aTa | 4 | 4 | AY.3.1 | 0.000341 |
N | 271 | T271del | ACA | --- | 4 | 4 | B.1 | 0.000037 |
N | 271 | T271A | Aca | Gca | 4 | 4 | B.1.1 | 0.000073 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.1.318 | 0.001207 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.177.35 | 0.002764 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.177.8 | 0.00301 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.177.87 | 0.002911 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.236 | 0.008214 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.258.17 | 0.000416 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.395 | 0.028169 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.466.2 | 0.001565 |
N | 271 | T271I | aCa | aTa | 4 | 4 | B.1.627 | 0.008081 |
N | 271 | T271I | aCa | aTa | 4 | 4 | D.2 | 0.0003 |
N | 271 | T271I | aCa | aTa | 4 | 4 | P.2 | 0.000747 |
N | 271 | T271L | ACA | TTG | 3 | 3 | All | 0.000001 |
N | 271 | T271P | Aca | Cca | 2 | 3 | All | 0 |
N | 271 | T271P | AcA | CcT | 1 | 3 | All | 0 |
N | 271 | T271I | aCa | aTa | 3 | 3 | AY.106 | 0.001005 |
N | 271 | T271I | aCa | aTa | 3 | 3 | AY.110 | 0.000338 |
N | 271 | T271T | acA | acT | 3 | 3 | AY.21 | 0.005693 |
N | 271 | T271T | acA | acT | 2 | 3 | AY.3.1 | 0.000171 |
N | 271 | T271T | acA | acG | 1 | 3 | AY.3.1 | 0.000085 |
N | 271 | T271I | aCa | aTa | 3 | 3 | AY.46.4 | 0.000494 |
N | 271 | T271I | aCa | aTa | 3 | 3 | AY.67 | 0.001393 |
N | 271 | T271I | aCa | aTa | 3 | 3 | AY.7.1 | 0.000338 |
N | 271 | T271I | aCa | aTa | 3 | 3 | AY.9.2 | 0.00011 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.1.216 | 0.002671 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.1.28 | 0.000934 |
N | 271 | T271T | acA | acG | 3 | 3 | B.1.160.17 | 0.005102 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.177.21 | 0.000229 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.177.43 | 0.004431 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.177.44 | 0.001557 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.177.60 | 0.000655 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.241 | 0.002435 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.298 | 0.006342 |
N | 271 | T271T | acA | acG | 3 | 3 | B.1.369 | 0.000856 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.375 | 0.002459 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.398 | 0.008929 |
N | 271 | T271A | Aca | Gca | 3 | 3 | B.1.429 | 0.000071 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.438.1 | 0.000322 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.619.1 | 0.001924 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.1.621 | 0.000266 |
N | 271 | T271I | aCa | aTa | 3 | 3 | B.6 | 0.00273 |
N | 271 | T271I | aCa | aTa | 3 | 3 | P.1.12 | 0.001452 |
N | 271 | T271I | aCa | aTa | 3 | 3 | Q.7 | 0.003333 |
N | 271 | T271I | aCa | aTa | 3 | 3 | R.1 | 0.00027 |
N | 271 | T271G | ACa | GGa | 2 | 2 | 0.111111 | |
N | 271 | T271I | aCa | aTa | 2 | 2 | A | 0.000774 |
N | 271 | T271I | aCa | aTa | 2 | 2 | A.1 | 0.000564 |
N | 271 | T271G | ACa | GGa | 2 | 2 | All | 0 |
N | 271 | T271del | ACA | --- | 2 | 2 | AY.100 | 0.000092 |
N | 271 | T271T | acA | acT | 2 | 2 | AY.100 | 0.000092 |
N | 271 | T271A | Aca | Gca | 2 | 2 | AY.106 | 0.00067 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.108 | 0.002205 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.114 | 0.000462 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.12 | 0.000632 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.121 | 0.000271 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.24 | 0.000862 |
N | 271 | T271K | aCa | aAa | 2 | 2 | AY.29 | 0.000032 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.34 | 0.000194 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.4.3 | 0.001684 |
N | 271 | T271del | ACA | --- | 2 | 2 | AY.43 | 0.000009 |
N | 271 | T271S | Aca | Tca | 2 | 2 | AY.47 | 0.000062 |
N | 271 | T271T | acA | acT | 2 | 2 | AY.48 | 0.00093 |
N | 271 | T271P | Aca | Cca | 1 | 2 | AY.59 | 0.00053 |
N | 271 | T271P | AcA | CcT | 1 | 2 | AY.59 | 0.00053 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.62 | 0.000871 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.71 | 0.00095 |
N | 271 | T271T | acA | acT | 2 | 2 | AY.75 | 0.000112 |
N | 271 | T271T | acA | acT | 2 | 2 | AY.88 | 0.001768 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.9.1 | 0.000167 |
N | 271 | T271T | acA | acT | 2 | 2 | AY.92 | 0.000575 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.92 | 0.000575 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.98 | 0.000158 |
N | 271 | T271I | aCa | aTa | 2 | 2 | AY.99.2 | 0.000184 |
N | 271 | T271K | aCa | aAa | 2 | 2 | B.1 | 0.000018 |
N | 271 | T271del | ACA | --- | 2 | 2 | B.1.1 | 0.000036 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.1.109 | 0.08 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.1.176 | 0.000879 |
N | 271 | T271A | Aca | Gca | 2 | 2 | B.1.1.214 | 0.000111 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.1.265 | 0.006309 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.1.269 | 0.002706 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.1.306 | 0.000877 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.1.317 | 0.000823 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.1.37 | 0.000386 |
N | 271 | T271A | Aca | Gca | 2 | 2 | B.1.1.50 | 0.001358 |
N | 271 | T271del | ACA | --- | 2 | 2 | B.1.1.7 | 0.000002 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.158 | 0.047619 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.177.17 | 0.001642 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.177.4 | 0.000422 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.177.75 | 0.002081 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.177.86 | 0.000367 |
N | 271 | T271K | aCa | aAa | 2 | 2 | B.1.2 | 0.000018 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.245 | 0.0625 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.279 | 0.001027 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.336 | 0.004878 |
N | 271 | T271S | Aca | Tca | 2 | 2 | B.1.351 | 0.000059 |
N | 271 | T271T | acA | acT | 2 | 2 | B.1.351 | 0.000059 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.403 | 0.006536 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.476 | 0.2 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.525 | 0.000226 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.564 | 0.000852 |
N | 271 | T271T | acA | acT | 2 | 2 | B.1.582 | 0.000981 |
N | 271 | T271T | acA | acT | 2 | 2 | B.1.596 | 0.000174 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.609 | 0.000959 |
N | 271 | T271del | ACA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
N | 271 | T271I | aCa | aTa | 2 | 2 | B.1.618 | 0.008065 |
N | 271 | T271T | acA | acT | 2 | 2 | B.1.621 | 0.000177 |
N | 271 | T271I | aCa | aTa | 2 | 2 | P.1.7 | 0.000639 |
N | 271 | T271I | aCa | aTa | 1 | 1 | A.2.2 | 0.001689 |
N | 271 | T271I | aCa | aTa | 1 | 1 | A.2.5 | 0.000499 |
N | 271 | T271I | aCa | aTa | 1 | 1 | A.3 | 0.002096 |
N | 271 | T271T | acA | acT | 1 | 1 | AD.1 | 0.004115 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AT.1 | 0.005128 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.1 | 0.000396 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.101 | 0.00049 |
N | 271 | T271T | acA | acC | 1 | 1 | AY.102 | 0.000027 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.107 | 0.000466 |
N | 271 | T271del | ACA | --- | 1 | 1 | AY.107 | 0.000466 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.109 | 0.00074 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.113 | 0.000142 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.116 | 0.000287 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.119 | 0.000035 |
N | 271 | T271T | acA | acG | 1 | 1 | AY.12 | 0.000316 |
N | 271 | T271A | Aca | Gca | 1 | 1 | AY.120 | 0.000037 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.13 | 0.000161 |
N | 271 | T271T | acA | acG | 1 | 1 | AY.14 | 0.000088 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.2 | 0.000356 |
N | 271 | T271A | Aca | Gca | 1 | 1 | AY.20 | 0.000039 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.20 | 0.000039 |
N | 271 | T271T | acA | acG | 1 | 1 | AY.20 | 0.000039 |
N | 271 | T271A | AcA | GcG | 1 | 1 | AY.23 | 0.00007 |
N | 271 | T271L | ACA | TTG | 1 | 1 | AY.23 | 0.00007 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.23.1 | 0.000417 |
N | 271 | T271S | Aca | Tca | 1 | 1 | AY.25 | 0.000006 |
N | 271 | T271K | aCa | aAa | 1 | 1 | AY.26 | 0.000028 |
N | 271 | T271S | Aca | Tca | 1 | 1 | AY.26 | 0.000028 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.29.1 | 0.000221 |
N | 271 | T271del | ACA | --- | 1 | 1 | AY.3 | 0.00001 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.3 | 0.00001 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.30 | 0.000396 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.33 | 0.000067 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.37 | 0.000316 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.38 | 0.000499 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.38 | 0.000499 |
N | 271 | T271A | Aca | Gca | 1 | 1 | AY.39 | 0.000025 |
N | 271 | T271T | acA | acC | 1 | 1 | AY.39 | 0.000025 |
N | 271 | T271del | ACA | --- | 1 | 1 | AY.39 | 0.000025 |
N | 271 | T271T | acA | acG | 1 | 1 | AY.4.2 | 0.000022 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
N | 271 | T271del2 | ACa | --a | 1 | 1 | AY.43 | 0.000004 |
N | 271 | T271A | AcA | GcG | 1 | 1 | AY.43 | 0.000004 |
N | 271 | T271A | Aca | Gca | 1 | 1 | AY.44 | 0.000006 |
N | 271 | T271P | Aca | Cca | 1 | 1 | AY.44 | 0.000006 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.46.1 | 0.001027 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.46.4 | 0.000165 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.46.5 | 0.000198 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.5.3 | 0.000337 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.54 | 0.000095 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.54 | 0.000095 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.55 | 0.000917 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.59 | 0.00053 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.61 | 0.000105 |
N | 271 | T271A | Aca | Gca | 1 | 1 | AY.62 | 0.000436 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.65 | 0.000533 |
N | 271 | T271del | ACA | --- | 1 | 1 | AY.67 | 0.000464 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.69 | 0.000187 |
N | 271 | T271del | ACA | --- | 1 | 1 | AY.75 | 0.000056 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.75.1 | 0.00018 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.84 | 0.000437 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.88 | 0.000884 |
N | 271 | T271A | Aca | Gca | 1 | 1 | AY.9.1 | 0.000084 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.9.2 | 0.000037 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.98.1 | 0.000048 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AY.99.1 | 0.001553 |
N | 271 | T271T | acA | acT | 1 | 1 | AY.99.2 | 0.000092 |
N | 271 | T271I | aCa | aTa | 1 | 1 | AZ.2 | 0.000821 |
N | 271 | T271L | ACA | TTG | 1 | 1 | B.1 | 0.000009 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.1 | 0.000018 |
N | 271 | T271del | ACA | --- | 1 | 1 | B.1.1.115 | 0.008929 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.170 | 0.001247 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.198 | 0.001468 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.228 | 0.003049 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.251 | 0.007937 |
N | 271 | T271S | AcA | TcT | 1 | 1 | B.1.1.27 | 0.00565 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.1.282 | 0.011628 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.284 | 0.000107 |
N | 271 | T271S | Aca | Tca | 1 | 1 | B.1.1.294 | 0.001266 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.316 | 0.000925 |
N | 271 | T271A | Aca | Gca | 1 | 1 | B.1.1.318 | 0.000302 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.1.397 | 0.002252 |
N | 271 | T271A | Aca | Gca | 1 | 1 | B.1.1.409 | 0.002833 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.412 | 0.007634 |
N | 271 | T271T | acA | acC | 1 | 1 | B.1.1.448 | 0.002033 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.1.46 | 0.004367 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.50 | 0.000679 |
N | 271 | T271A | Aca | Gca | 1 | 1 | B.1.1.519 | 0.00004 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.523 | 0.001563 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.1.83 | 0.00271 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.128 | 0.000635 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.160.14 | 0.002119 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.160.15 | 0.00495 |
N | 271 | T271A | Aca | Gca | 1 | 1 | B.1.177 | 0.000013 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.177.12 | 0.000152 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.177.15 | 0.000631 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.177.29 | 0.066667 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.177.42 | 0.000894 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.177.55 | 0.002331 |
N | 271 | T271del2 | ACA | --T | 1 | 1 | B.1.177.63 | 0.002703 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.177.63 | 0.002703 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.177.82 | 0.000477 |
N | 271 | T271del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.189 | 0.004292 |
N | 271 | T271del | ACA | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.218 | 0.005155 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.221.1 | 0.002907 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.234 | 0.000132 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
N | 271 | T271T | acA | acG | 1 | 1 | B.1.241 | 0.000812 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.258.14 | 0.00098 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.258.17 | 0.000104 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.311 | 0.000275 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.315 | 0.006061 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.325 | 0.006897 |
N | 271 | T271del | ACA | --- | 1 | 1 | B.1.351 | 0.00003 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.351.2 | 0.000303 |
N | 271 | T271del2 | ACa | --a | 1 | 1 | B.1.355 | 0.011111 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.36 | 0.000146 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.36.1 | 0.00114 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.36.10 | 0.004785 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.36.16 | 0.001425 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.36.18 | 0.00042 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.36.8 | 0.001 |
N | 271 | T271A | Aca | Gca | 1 | 1 | B.1.375 | 0.00082 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.381 | 0.007812 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.396 | 0.000706 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.409 | 0.000781 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.427 | 0.00005 |
N | 271 | T271del2 | ACa | --a | 1 | 1 | B.1.429 | 0.000024 |
N | 271 | T271del | ACA | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.448 | 0.002625 |
N | 271 | T271T | acA | acT | 1 | 1 | B.1.462 | 0.007246 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.462 | 0.007246 |
N | 271 | T271T | acA | acC | 1 | 1 | B.1.466.2 | 0.000391 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.503 | 0.002488 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.541 | 0.004425 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.556 | 0.007519 |
N | 271 | T271del | ACA | --- | 1 | 1 | B.1.560 | 0.00463 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.561 | 0.000397 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.577 | 0.000687 |
N | 271 | T271del2 | ACa | --a | 1 | 1 | B.1.582 | 0.000491 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.582 | 0.000491 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.585 | 0.027778 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.588 | 0.00091 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.599 | 0.00365 |
N | 271 | T271A | Aca | Gca | 1 | 1 | B.1.617.1 | 0.000129 |
N | 271 | T271L | ACA | TTG | 1 | 1 | B.1.617.1 | 0.000129 |
N | 271 | T271S | Aca | Tca | 1 | 1 | B.1.617.2 | 0.000004 |
N | 271 | T271del2 | ACa | --a | 1 | 1 | B.1.617.2 | 0.000004 |
N | 271 | T271del | ACA | --- | 1 | 1 | B.1.621 | 0.000089 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.621.1 | 0.000506 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.632 | 0.006711 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.9.4 | 0.006135 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.1.93 | 0.000934 |
N | 271 | T271I | aCa | aTa | 1 | 1 | B.3 | 0.000831 |
N | 271 | T271I | aCa | aTa | 1 | 1 | C.1 | 0.002392 |
N | 271 | T271I | aCa | aTa | 1 | 1 | C.36.3 | 0.000567 |
N | 271 | T271T | acA | acG | 1 | 1 | C.37 | 0.000116 |
N | 271 | T271I | aCa | aTa | 1 | 1 | C.37.1 | 0.002618 |
N | 271 | T271I | aCa | aTa | 1 | 1 | C.8 | 0.004464 |
N | 271 | T271T | acA | acG | 1 | 1 | D.2 | 0.000075 |
N | 271 | T271S | Aca | Tca | 1 | 1 | D.2 | 0.000075 |
N | 271 | T271del | ACA | --- | 1 | 1 | D.2 | 0.000075 |
N | 271 | T271A | Aca | Gca | 1 | 1 | P.1.13 | 0.000898 |
N | 271 | T271A | Aca | Gca | 1 | 1 | P.1.15 | 0.000232 |
N | 271 | T271I | aCa | aTa | 1 | 1 | P.1.15 | 0.000232 |
N | 271 | T271del2 | ACa | --a | 1 | 1 | P.1.15 | 0.000232 |
N | 271 | T271I | aCa | aTa | 1 | 1 | P.1.2 | 0.001156 |
N | 271 | T271I | aCa | aTa | 1 | 1 | P.6 | 0.003145 |
N | 271 | T271T | acA | acT | 1 | 1 | P.7 | 0.004367 |
N | 271 | T271I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
N | 271 | T271I | aCa | aTa | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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