CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 258

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N258P258PsynccTccC6835630.82430529045-29047
N258P258PsynccTccG683670.098096629045-29047
N258P258PsynccTccA683530.077598829045-29047
N258P258LnonsyncCtcTt4974950.99597629045-29047
N258P258LnonsyncCTcTC49720.0040241429045-29047
N258P258SnonsynCctTct1751740.99428629045-29047
N258P258SnonsynCcTTcC17510.0057142929045-29047
N258P258HnonsyncCtcAt70690.98571429045-29047
N258P258HnonsyncCTcAC7010.014285729045-29047
N258P258TnonsynCctAct25230.9229045-29047
N258P258TnonsynCcTAcA2510.0429045-29047
N258P258TnonsynCcTAcG2510.0429045-29047
N258P258RnonsyncCtcGt1919129045-29047
N258P258deldelCCT---1515129045-29047
N258P258del1delccTcc-1050.529045-29047
N258P258del1delCct-ct1040.429045-29047
N258P258del1delCCt-Tt1010.129045-29047
N258P258AnonsynCctGct980.88888929045-29047
N258P258AnonsynCcTGcC910.11111129045-29047
N258P258del2delcCTc--22129045-29047
N258P258QnonsyncCTcAA11129045-29047
N258P258VnonsynCCtGTt11129045-29047
N258P258FnonsynCCTTTC11129045-29047
N258P258GnonsynCCtGGt11129045-29047

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N258P258PccTccC563683All0.000108
N258P258PccTccG67683All0.000013
N258P258PccTccA53683All0.00001
N258P258LcCtcTt495497All0.000095
N258P258LcCTcTC2497All0
N258P258LcCtcTt299299B.1.5260.007028
N258P258SCctTct174175All0.000033
N258P258SCcTTcC1175All0
N258P258PccTccC168174B.1.4290.003953
N258P258PccTccA6174B.1.4290.000141
N258P258PccTccC120120B.1.1.2940.151899
N258P258HcCtcAt6970All0.000013
N258P258HcCTcAC170All0
N258P258SCctTct5858AY.40.00009
N258P258PccTccC4445AY.440.000268
N258P258PccTccG145AY.440.000006
N258P258PccTccC2845B.1.1.70.000025
N258P258PccTccA1445B.1.1.70.000013
N258P258PccTccG345B.1.1.70.000003
N258P258PccTccC4343M.11
N258P258LcCtcTt3838AY.40.000059
N258P258TCctAct2325All0.000004
N258P258TCcTAcG125All0
N258P258TCcTAcA125All0
N258P258RcCtcGt1919All0.000004
N258P258SCctTct1818B.1.1.2740.090909
N258P258PccTccG1717AY.30.000169
N258P258HcCtcAt1717B.1.1.70.000015
N258P258delCCT---1515All0.000003
N258P258LcCtcTt1414AY.120.10.004494
N258P258PccTccG1414B.1.3510.000416
N258P258PccTccC1214B.1.617.20.000045
N258P258PccTccA214B.1.617.20.000008
N258P258HcCtcAt1313AY.40.00002
N258P258PccTccC1113B.10.000101
N258P258PccTccG213B.10.000018
N258P258PccTccC1313B.1.6320.087248
N258P258PccTccG1212AY.260.00034
N258P258PccTccC612AY.40.000009
N258P258PccTccG512AY.40.000008
N258P258PccTccA112AY.40.000002
N258P258LcCtcTt1212B.1.1.70.000011
N258P258LcCtcTt1212B.1.4520.164384
N258P258PccTccC1011AY.430.000044
N258P258PccTccG111AY.430.000004
N258P258SCctTct1111AY.440.000067
N258P258LcCtcTt1111AY.440.000067
N258P258del1ccTcc-510All0.000001
N258P258del1Cct-ct410All0.000001
N258P258del1CCt-Tt110All0
N258P258ACctGct89All0.000002
N258P258ACcTGcC19All0
N258P258RcCtcGt99B.1.1.70.000008
N258P258RcCtcGt99B.1.5250.001018
N258P258SCctTct88AY.250.000048
N258P258PccTccA68AY.50.000124
N258P258PccTccC28AY.50.000041
N258P258LcCtcTt88B.1.2210.000568
N258P258PccTccC88B.1.4000.003432
N258P258PccTccC88B.1.4800.0199
N258P258SCctTct88B.1.617.20.00003
N258P258LcCtcTt77AY.370.002212
N258P258LcCtcTt77AY.430.000031
N258P258LcCtcTt77AY.690.001307
N258P258LcCtcTt77B.1.20.000062
N258P258SCctTct77B.1.3510.000208
N258P258PccTccC36AY.200.000117
N258P258PccTccG36AY.200.000117
N258P258LcCtcTt66AY.250.000036
N258P258SCctTct56B.1.1.70.000004
N258P258SCcTTcC16B.1.1.70.000001
N258P258PccTccA36B.1.20.000026
N258P258PccTccG26B.1.20.000018
N258P258PccTccC16B.1.20.000009
N258P258PccTccC66B.1.4270.000303
N258P258LcCtcTt66B.1.617.20.000023
N258P258PccTccA66P.10.000095
N258P258HcCtcAt55AY.250.00003
N258P258PccTccC55AY.290.000079
N258P258PccTccC55AY.29.10.001103
N258P258LcCtcTt55AY.390.000124
N258P258PccTccA25AY.390.000049
N258P258PccTccC25AY.390.000049
N258P258PccTccG15AY.390.000025
N258P258SCctTct55B.10.000046
N258P258LcCtcTt55B.1.1.2220.00102
N258P258HcCtcAt55B.1.20.000044
N258P258PccTccC35B.1.36.290.001552
N258P258PccTccG25B.1.36.290.001035
N258P258TCctAct55B.1.438.10.000536
N258P258PccTccC55B.1.4690.018051
N258P258SCctTct55P.10.000079
N258P258PccTccC44AY.1020.000106
N258P258HcCtcAt44AY.1180.000251
N258P258LcCtcTt44AY.60.000165
N258P258SCctTct44AY.790.004843
N258P258LcCtcTt34B.10.000027
N258P258LcCTcTC14B.10.000009
N258P258LcCtcTt44B.1.1.1530.004381
N258P258SCctTct44B.1.20.000035
N258P258LcCtcTt44B.1.2390.004884
N258P258PccTccA44B.1.258.170.000416
N258P258PccTccC33AY.1030.000019
N258P258PccTccC33AY.250.000018
N258P258TCctAct33AY.300.001187
N258P258PccTccA33AY.98.10.000145
N258P258PccTccC33B.1.177.570.000843
N258P258SCctTct33B.1.2430.000209
N258P258PccTccC33B.1.3690.000856
N258P258LcCtcTt33B.1.4290.000071
N258P258HcCtcAt33B.1.617.20.000011
N258P258ACctGct220.111111
N258P258del2cCTc--22All0
N258P258SCctTct22AY.1000.000092
N258P258LcCtcTt22AY.1030.000012
N258P258HcCtcAt22AY.1030.000012
N258P258LcCtcTt22AY.1190.000071
N258P258delCCT---22AY.250.000012
N258P258SCctTct22AY.330.000134
N258P258LcCtcTt12AY.400.000964
N258P258LcCTcTC12AY.400.000964
N258P258HcCtcAt22AY.430.000009
N258P258TCctAct22AY.440.000012
N258P258HcCtcAt22AY.440.000012
N258P258PccTccC22AY.470.000062
N258P258SCctTct22AY.50.000041
N258P258HcCtcAt22AY.90.000135
N258P258LcCtcTt22AY.90.000135
N258P258SCctTct22AY.9.20.000073
N258P258PccTccC22AY.930.000546
N258P258TCctAct22B.10.000018
N258P258delCCT---22B.10.000018
N258P258HcCTcAC12B.10.000009
N258P258HcCtcAt12B.10.000009
N258P258PccTccC22B.1.10.000036
N258P258LcCtcTt22B.1.1.100.00223
N258P258PccTccA22B.1.1.700.000682
N258P258SCctTct22B.1.1770.000026
N258P258PccTccC22B.1.1770.000026
N258P258PccTccC22B.1.177.860.000367
N258P258PccTccC22B.1.2580.000133
N258P258PccTccA22B.1.564.10.003155
N258P258PccTccC22B.1.6210.000177
N258P258PccTccC22C.10.004785
N258P258LcCtcTt22P.10.000032
N258P258GCCtGGt11All0
N258P258FCCTTTC11All0
N258P258QcCTcAA11All0
N258P258VCCtGTt11All0
N258P258LcCtcTt11AU.20.002421
N258P258delCCT---11AY.1000.000046
N258P258PccTccC11AY.1000.000046
N258P258LcCtcTt11AY.1000.000046
N258P258SCctTct11AY.1020.000027
N258P258SCctTct11AY.1030.000006
N258P258TCctAct11AY.1160.000287
N258P258PccTccC11AY.1160.000287
N258P258SCctTct11AY.1170.000085
N258P258LcCtcTt11AY.1180.000063
N258P258LcCtcTt11AY.120.000316
N258P258PccTccC11AY.1200.000037
N258P258HcCtcAt11AY.1200.000037
N258P258TCctAct11AY.1200.000037
N258P258PccTccC11AY.120.20.001285
N258P258LcCtcTt11AY.130.000161
N258P258PccTccC11AY.130.000161
N258P258PccTccC11AY.16.10.00047
N258P258SCctTct11AY.200.000039
N258P258TCctAct11AY.200.000039
N258P258PccTccC11AY.230.00007
N258P258TCctAct11AY.250.000006
N258P258del2cCTc--11AY.250.000006
N258P258HcCtcAt11AY.260.000028
N258P258PccTccC11AY.270.000065
N258P258SCctTct11AY.270.000065
N258P258LcCtcTt11AY.290.000016
N258P258LcCtcTt11AY.30.00001
N258P258SCctTct11AY.30.00001
N258P258PccTccC11AY.340.000097
N258P258SCctTct11AY.340.000097
N258P258PccTccG11AY.360.000148
N258P258HcCtcAt11AY.390.000025
N258P258SCctTct11AY.390.000025
N258P258SCctTct11AY.39.10.00004
N258P258RcCtcGt11AY.40.000002
N258P258TCctAct11AY.40.000002
N258P258PccTccA11AY.4.20.000022
N258P258SCctTct11AY.430.000004
N258P258delCCT---11AY.440.000006
N258P258del1ccTcc-11AY.440.000006
N258P258SCctTct11AY.450.000122
N258P258PccTccC11AY.460.000104
N258P258SCctTct11AY.470.000031
N258P258del1Cct-ct11AY.480.000465
N258P258TCctAct11AY.50.000021
N258P258LcCtcTt11AY.530.000288
N258P258PccTccC11AY.570.000656
N258P258PccTccC11AY.60.000041
N258P258SCctTct11AY.60.000041
N258P258LcCtcTt11AY.610.000105
N258P258delCCT---11AY.670.000464
N258P258ACctGct11AY.680.000274
N258P258SCctTct11AY.7.10.000113
N258P258PccTccC11AY.710.000475
N258P258LcCtcTt11AY.740.000116
N258P258PccTccC11AY.740.000116
N258P258SCctTct11AY.750.000056
N258P258delCCT---11AY.750.000056
N258P258PccTccG11AY.850.000427
N258P258PccTccC11AY.90.000068
N258P258del1ccTcc-11AY.9.20.000037
N258P258PccTccG11AY.9.20.000037
N258P258delCCT---11AY.9.20.000037
N258P258HcCtcAt11AY.980.000079
N258P258LcCtcTt11AY.98.10.000048
N258P258del1ccTcc-11B0.000128
N258P258FCCTTTC11B.10.000009
N258P258del1CCt-Tt11B.10.000009
N258P258ACctGct11B.10.000009
N258P258ACctGct11B.1.10.000018
N258P258delCCT---11B.1.10.000018
N258P258HcCtcAt11B.1.10.000018
N258P258TCctAct11B.1.10.000018
N258P258LcCtcTt11B.1.10.000018
N258P258LcCtcTt11B.1.1.1210.002427
N258P258SCctTct11B.1.1.1340.011364
N258P258HcCtcAt11B.1.1.2140.000055
N258P258SCctTct11B.1.1.2140.000055
N258P258SCctTct11B.1.1.2220.000204
N258P258VCCtGTt11B.1.1.270.00565
N258P258TCcTAcG11B.1.1.3000.010753
N258P258LcCtcTt11B.1.1.3070.002532
N258P258SCctTct11B.1.1.3110.000358
N258P258PccTccC11B.1.1.3370.003597
N258P258LcCtcTt11B.1.1.4870.005587
N258P258LcCtcTt11B.1.1.5190.00004
N258P258ACcTGcC11B.1.1.70.000001
N258P258QcCTcAA11B.1.1.70.000001
N258P258del1ccTcc-11B.1.1.70.000001
N258P258TCcTAcA11B.1.1.70.000001
N258P258del1Cct-ct11B.1.1100.004525
N258P258PccTccC11B.1.1570.002985
N258P258HcCtcAt11B.1.1770.000013
N258P258ACctGct11B.1.1770.000013
N258P258PccTccC11B.1.177.550.002331
N258P258GCCtGGt11B.1.177.630.002703
N258P258LcCtcTt11B.1.177.730.000566
N258P258delCCT---11B.1.177.830.001481
N258P258TCctAct11B.1.20.000009
N258P258del2cCTc--11B.1.20.000009
N258P258LcCtcTt11B.1.214.20.0006
N258P258LcCtcTt11B.1.2580.000067
N258P258HcCtcAt11B.1.3280.03125
N258P258PccTccC11B.1.3360.002439
N258P258SCctTct11B.1.360.000146
N258P258PccTccC11B.1.36.100.004785
N258P258HcCtcAt11B.1.36.160.001425
N258P258PccTccC11B.1.36.390.002217
N258P258delCCT---11B.1.3690.000285
N258P258PccTccC11B.1.390.003906
N258P258SCctTct11B.1.4040.001302
N258P258LcCtcTt11B.1.4270.00005
N258P258SCctTct11B.1.4330.003195
N258P258delCCT---11B.1.4390.005917
N258P258SCctTct11B.1.4410.009615
N258P258PccTccC11B.1.4410.009615
N258P258HcCtcAt11B.1.5250.000113
N258P258HcCtcAt11B.1.5260.000024
N258P258SCctTct11B.1.5260.000024
N258P258PccTccC11B.1.5380.008065
N258P258del1ccTcc-11B.1.5950.000261
N258P258SCctTct11B.1.5950.000261
N258P258TCctAct11B.1.617.10.000129
N258P258del1Cct-ct11B.1.617.10.000129
N258P258ACctGct11B.1.617.20.000004
N258P258delCCT---11B.1.617.20.000004
N258P258TCctAct11B.1.617.20.000004
N258P258PccTccA11B.1.6180.004032
N258P258LcCtcTt11B.1.6210.000089
N258P258PccTccC11B.1.6230.000536
N258P258SCctTct11B.1.6280.000352
N258P258HcCtcAt11B.1.6370.000073
N258P258SCctTct11C.1.20.004255
N258P258HcCtcAt11C.280.04
N258P258PccTccC11C.370.000116
N258P258PccTccC11N.40.004255
N258P258del1Cct-ct11P.10.000016
N258P258PccTccG11P.1.10.000318
N258P258TCctAct11P.1.100.000269
N258P258SCctTct11P.1.140.000048
N258P258LcCtcTt11P.1.140.000048
N258P258delCCT---11P.1.150.000232
N258P258PccTccC11P.1.70.000319
N258P258ACctGct11P.20.000187