CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 256

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N256K256RnonsynaAgaGg9329280.99570829039-29041
N256K256RnonsynaAGaGA93220.0021459229039-29041
N256K256RnonsynAAgCGg93220.0021459229039-29041
N256K256NnonsynaaGaaT8195060.61782729039-29041
N256K256NnonsynaaGaaC8193130.38217329039-29041
N256K256XnonsynAagTag444444129039-29041
N256K256KsynaaGaaA357357129039-29041
N256K256MnonsynaAgaTg5454129039-29041
N256K256TnonsynaAgaCg1616129039-29041
N256K256deldelAAG---1313129039-29041
N256K256del1delAag-ag860.7529039-29041
N256K256del1delaaGaa-820.2529039-29041
N256K256EnonsynAagGag44129039-29041
N256K256QnonsynAagCag33129039-29041
N256K256GnonsynAAGGGC22129039-29041
N256K256del2delaAGa--11129039-29041
N256K256YnonsynAaGTaC11129039-29041

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N256K256RaAgaGg928932All0.000177
N256K256RaAGaGA2932All0
N256K256RAAgCGg2932All0
N256K256NaaGaaT506819All0.000097
N256K256NaaGaaC313819All0.00006
N256K256XAagTag444444All0.000085
N256K256KaaGaaA357357All0.000068
N256K256RaAgaGg331331C.36.30.187748
N256K256RaAgaGg320320C.36.3.10.869565
N256K256XAagTag284284B.1.1.70.000254
N256K256NaaGaaC151154AY.1140.034897
N256K256NaaGaaT3154AY.1140.000693
N256K256NaaGaaT97125AY.40.000151
N256K256NaaGaaC28125AY.40.000044
N256K256RaAgaGg124124AY.40.000193
N256K256KaaGaaA7272B.1.5750.021845
N256K256KaaGaaA5959AY.40.000092
N256K256MaAgaTg5454All0.00001
N256K256KaaGaaA5454B.1.1.70.000048
N256K256NaaGaaT4951B.1.617.20.000185
N256K256NaaGaaC251B.1.617.20.000008
N256K256NaaGaaT3747B.1.1.70.000033
N256K256NaaGaaC1047B.1.1.70.000009
N256K256NaaGaaT4444AY.430.000195
N256K256NaaGaaT3440AY.1030.000211
N256K256NaaGaaC640AY.1030.000037
N256K256NaaGaaC2834AY.200.001088
N256K256NaaGaaT634AY.200.000233
N256K256RaAgaGg3131B.1.617.20.000117
N256K256NaaGaaT2327AY.250.000138
N256K256NaaGaaC427AY.250.000024
N256K256NaaGaaT1324AY.440.000079
N256K256NaaGaaC1124AY.440.000067
N256K256NaaGaaC1823B.1.5260.000423
N256K256NaaGaaT523B.1.5260.000118
N256K256MaAgaTg2121AY.1030.00013
N256K256XAagTag2020B.10.000183
N256K256RaAgaGg1818AY.1000.000828
N256K256TaAgaCg1616All0.000003
N256K256KaaGaaA1616AY.430.000071
N256K256NaaGaaC914B.10.000082
N256K256NaaGaaT514B.10.000046
N256K256XAagTag1414B.1.617.20.000053
N256K256delAAG---1313All0.000002
N256K256RaAgaGg1313B.10.000119
N256K256KaaGaaA1313B.1.617.20.000049
N256K256KaaGaaA1313B.1.6210.001151
N256K256XAagTag1212AY.430.000053
N256K256NaaGaaC811B.1.1.5190.000318
N256K256NaaGaaT311B.1.1.5190.000119
N256K256NaaGaaT1111B.1.20.000097
N256K256RaAgaGg1010AY.1180.000626
N256K256KaaGaaA1010AY.46.60.000722
N256K256KaaGaaA99AY.250.000054
N256K256RaAgaGg99B.1.1.70.000008
N256K256del1Aag-ag68All0.000001
N256K256del1aaGaa-28All0
N256K256XAagTag88AY.40.000012
N256K256NaaGaaT68B.1.1770.000079
N256K256NaaGaaC28B.1.1770.000026
N256K256NaaGaaT88B.1.3510.000238
N256K256NaaGaaT58D.20.000375
N256K256NaaGaaC38D.20.000225
N256K256NaaGaaT67AY.1200.000223
N256K256NaaGaaC17AY.1200.000037
N256K256KaaGaaA77AY.230.000488
N256K256NaaGaaT77AY.290.00011
N256K256RaAgaGg77AY.30.00007
N256K256NaaGaaT57AY.50.000103
N256K256NaaGaaC27AY.50.000041
N256K256RaAgaGg77AY.99.20.000645
N256K256XAagTag77B.1.1770.000092
N256K256KaaGaaA77P.1.10.002224
N256K256NaaGaaT66AY.1020.000159
N256K256NaaGaaT46AY.390.000099
N256K256NaaGaaC26AY.390.000049
N256K256RaAgaGg66AY.440.000037
N256K256NaaGaaT56AY.60.000206
N256K256NaaGaaC16AY.60.000041
N256K256NaaGaaT66AY.7.10.000676
N256K256NaaGaaC46B.1.10.000073
N256K256NaaGaaT26B.1.10.000036
N256K256XAagTag66B.1.3510.000178
N256K256NaaGaaT55AY.1000.00023
N256K256KaaGaaA55AY.1030.000031
N256K256NaaGaaT55AY.1210.000677
N256K256XAagTag55AY.330.000334
N256K256NaaGaaT55AY.330.000334
N256K256MaAgaTg55AY.40.000008
N256K256RaAgaGg55AY.430.000022
N256K256KaaGaaA55AY.550.004587
N256K256MaAgaTg55B.1.1.70.000004
N256K256NaaGaaT45B.1.1600.000125
N256K256NaaGaaC15B.1.1600.000031
N256K256XAagTag55B.1.177.120.000758
N256K256KaaGaaA55B.1.5260.000118
N256K256KaaGaaA55P.10.000079
N256K256EAagGag44All0.000001
N256K256TaAgaCg44AY.1030.000025
N256K256NaaGaaT44AY.30.00004
N256K256NaaGaaT34AY.360.000445
N256K256NaaGaaC14AY.360.000148
N256K256XAagTag44AY.39.10.000158
N256K256XAagTag44B0.000511
N256K256XAagTag44B.1.10.000073
N256K256XAagTag44B.1.3890.004008
N256K256XAagTag44Q.10.000505
N256K256QAagCag33All0.000001
N256K256KaaGaaA33AY.1000.000138
N256K256RaAgaGg33AY.1170.000254
N256K256NaaGaaT33AY.1180.000188
N256K256NaaGaaT23AY.1190.000071
N256K256NaaGaaC13AY.1190.000035
N256K256TaAgaCg33AY.360.000445
N256K256RaAgaGg33AY.390.000074
N256K256NaaGaaT33AY.460.000312
N256K256NaaGaaT33AY.46.20.001906
N256K256NaaGaaT33AY.780.004622
N256K256KaaGaaA33B.10.000027
N256K256RaAgaGg33B.1.10.000054
N256K256NaaGaaT23B.1.1.3690.000892
N256K256NaaGaaC13B.1.1.3690.000446
N256K256KaaGaaA33B.1.1.5130.037037
N256K256del1aaGaa-23B.1.1.70.000002
N256K256del1Aag-ag13B.1.1.70.000001
N256K256NaaGaaT33B.1.177.70.000495
N256K256NaaGaaT33B.1.177.730.001699
N256K256KaaGaaA33B.1.4290.000071
N256K256RaAgaGg33P.10.000047
N256K256KaaGaaA33P.1.70.000958
N256K256GAAGGGC220.111111
N256K256RAAgCGg220.111111
N256K256XAagTag22A.70.111111
N256K256GAAGGGC22All0
N256K256NaaGaaT22AP.10.003003
N256K256KaaGaaA22AY.1020.000053
N256K256NaaGaaT22AY.1090.001479
N256K256RaAgaGg22AY.1130.000285
N256K256XAagTag22AY.1200.000074
N256K256NaaGaaT22AY.140.000176
N256K256TaAgaCg22AY.200.000078
N256K256XAagTag22AY.230.000139
N256K256NaaGaaT12AY.230.00007
N256K256NaaGaaC12AY.230.00007
N256K256delAAG---22AY.250.000012
N256K256NaaGaaT22AY.260.000057
N256K256NaaGaaT22AY.29.10.000441
N256K256MaAgaTg22AY.330.000134
N256K256NaaGaaC22AY.39.20.003082
N256K256KaaGaaA22AY.4.20.000043
N256K256NaaGaaT12AY.4.40.000409
N256K256NaaGaaC12AY.4.40.000409
N256K256XAagTag22AY.420.00008
N256K256NaaGaaT12AY.420.00004
N256K256NaaGaaC12AY.420.00004
N256K256RaAgaGg22AY.470.000062
N256K256KaaGaaA22AY.5.30.000675
N256K256KaaGaaA22AY.510.001818
N256K256KaaGaaA22AY.610.00021
N256K256XAagTag22AY.7.10.000225
N256K256NaaGaaC12AY.750.000056
N256K256NaaGaaT12AY.750.000056
N256K256NaaGaaC12AY.90.000068
N256K256NaaGaaT12AY.90.000068
N256K256NaaGaaT22AY.910.001461
N256K256NaaGaaT22AY.980.000158
N256K256NaaGaaT22AY.98.10.000097
N256K256NaaGaaT22AY.99.20.000184
N256K256NaaGaaT22B0.000256
N256K256KaaGaaA22B.1.10.000036
N256K256RaAgaGg22B.1.1.10.000653
N256K256KaaGaaA22B.1.1.1480.017544
N256K256RaAgaGg22B.1.1.2220.000408
N256K256XAagTag22B.1.1.250.001137
N256K256RaAgaGg22B.1.1.2940.002532
N256K256KaaGaaA22B.1.1.3060.000877
N256K256NaaGaaT12B.1.1.3110.000358
N256K256NaaGaaC12B.1.1.3110.000358
N256K256KaaGaaA22B.1.1770.000026
N256K256NaaGaaC12B.1.177.570.000281
N256K256NaaGaaT12B.1.177.570.000281
N256K256XAagTag22B.1.20.000018
N256K256RaAgaGg22B.1.20.000018
N256K256MaAgaTg22B.1.20.000018
N256K256RaAgaGg22B.1.3960.001411
N256K256XAagTag22B.1.4270.000101
N256K256NaaGaaC22B.1.438.10.000215
N256K256KaaGaaA22B.1.466.20.000782
N256K256NaaGaaT22B.1.5250.000226
N256K256RaAgaGg22B.1.5260.000047
N256K256XAagTag22B.1.5260.000047
N256K256KaaGaaA22B.1.5950.000522
N256K256KaaGaaA22B.1.6230.001073
N256K256XAagTag22B.40.004415
N256K256NaaGaaT22B.60.00182
N256K256EAagGag22D.20.00015
N256K256NaaGaaC12P.1.140.000048
N256K256NaaGaaT12P.1.140.000048
N256K256KaaGaaA22P.1.170.000324
N256K256XAagTag11A0.000387
N256K256NaaGaaC11A.2.20.001689
N256K256RaAgaGg11A.2.5.20.001572
N256K256YAaGTaC11All0
N256K256del2aAGa--11All0
N256K256KaaGaaA11AP.10.001502
N256K256delAAG---11AY.1000.000046
N256K256RaAgaGg11AY.1020.000027
N256K256RaAgaGg11AY.1030.000006
N256K256del1Aag-ag11AY.1080.001103
N256K256KaaGaaA11AY.1100.000113
N256K256MaAgaTg11AY.1110.000183
N256K256NaaGaaT11AY.1130.000142
N256K256KaaGaaA11AY.1130.000142
N256K256MaAgaTg11AY.1170.000085
N256K256NaaGaaT11AY.120.000316
N256K256MaAgaTg11AY.1210.000135
N256K256KaaGaaA11AY.1210.000135
N256K256KaaGaaA11AY.130.000161
N256K256MaAgaTg11AY.130.000161
N256K256NaaGaaT11AY.16.10.00047
N256K256XAagTag11AY.16.10.00047
N256K256XAagTag11AY.200.000039
N256K256YAaGTaC11AY.230.00007
N256K256RaAgaGg11AY.230.00007
N256K256TaAgaCg11AY.250.000006
N256K256RaAgaGg11AY.250.000006
N256K256XAagTag11AY.250.000006
N256K256QAagCag11AY.250.000006
N256K256KaaGaaA11AY.260.000028
N256K256XAagTag11AY.270.000065
N256K256NaaGaaT11AY.270.000065
N256K256RaAgaGg11AY.270.000065
N256K256NaaGaaT11AY.320.000532
N256K256NaaGaaT11AY.340.000097
N256K256MaAgaTg11AY.370.000316
N256K256MaAgaTg11AY.390.000025
N256K256NaaGaaC11AY.39.10.00004
N256K256QAagCag11AY.40.000002
N256K256NaaGaaT11AY.4.10.000737
N256K256NaaGaaT11AY.4.20.000022
N256K256NaaGaaT11AY.4.50.000107
N256K256TaAgaCg11AY.430.000004
N256K256delAAG---11AY.440.000006
N256K256del1Aag-ag11AY.440.000006
N256K256MaAgaTg11AY.440.000006
N256K256KaaGaaA11AY.450.000122
N256K256RaAgaGg11AY.460.000104
N256K256MaAgaTg11AY.460.000104
N256K256NaaGaaT11AY.46.50.000198
N256K256NaaGaaT11AY.46.60.000072
N256K256XAagTag11AY.50.000021
N256K256NaaGaaT11AY.5.30.000337
N256K256KaaGaaA11AY.60.000041
N256K256NaaGaaT11AY.610.000105
N256K256RaAgaGg11AY.610.000105
N256K256XAagTag11AY.610.000105
N256K256XAagTag11AY.680.000274
N256K256XAagTag11AY.7.20.000559
N256K256MaAgaTg11AY.700.000209
N256K256MaAgaTg11AY.710.000475
N256K256RaAgaGg11AY.710.000475
N256K256delAAG---11AY.750.000056
N256K256XAagTag11AY.750.000056
N256K256XAagTag11AY.75.10.00018
N256K256MaAgaTg11AY.880.000884
N256K256XAagTag11AY.90.000068
N256K256XAagTag11AY.9.10.000084
N256K256delAAG---11AY.9.20.000037
N256K256RaAgaGg11AY.9.20.000037
N256K256XAagTag11AY.9.20.000037
N256K256NaaGaaT11AY.930.000273
N256K256KaaGaaA11AY.940.000443
N256K256MaAgaTg11AY.99.20.000092
N256K256del2aAGa--11B0.000128
N256K256del1Aag-ag11B.10.000009
N256K256MaAgaTg11B.10.000009
N256K256delAAG---11B.10.000009
N256K256TaAgaCg11B.10.000009
N256K256delAAG---11B.1.10.000018
N256K256KaaGaaA11B.1.1.10.000327
N256K256XAagTag11B.1.1.1720.018182
N256K256KaaGaaA11B.1.1.1810.004545
N256K256KaaGaaA11B.1.1.1890.001513
N256K256NaaGaaT11B.1.1.2140.000055
N256K256XAagTag11B.1.1.2140.000055
N256K256NaaGaaT11B.1.1.2270.004348
N256K256RaAGaGA11B.1.1.270.00565
N256K256RaAgaGg11B.1.1.280.000311
N256K256KaaGaaA11B.1.1.280.000311
N256K256KaaGaaA11B.1.1.2980.000862
N256K256KaaGaaA11B.1.1.3030.002762
N256K256XAagTag11B.1.1.3060.000438
N256K256KaaGaaA11B.1.1.3480.000796
N256K256NaaGaaT11B.1.1.370.000193
N256K256NaaGaaT11B.1.1.4090.002833
N256K256XAagTag11B.1.1.4330.001425
N256K256KaaGaaA11B.1.1.4340.000349
N256K256XAagTag11B.1.1.4500.034483
N256K256XAagTag11B.1.1.5190.00004
N256K256EAagGag11B.1.1.70.000001
N256K256XAagTag11B.1.1.700.000341
N256K256NaaGaaT11B.1.1.890.006061
N256K256MaAgaTg11B.1.1050.009615
N256K256XAagTag11B.1.1470.000756
N256K256TaAgaCg11B.1.1600.000031
N256K256NaaGaaT11B.1.160.70.002079
N256K256NaaGaaT11B.1.177.210.000076
N256K256NaaGaaT11B.1.177.520.001757
N256K256EAagGag11B.1.177.630.002703
N256K256delAAG---11B.1.177.830.001481
N256K256NaaGaaC11B.1.177.870.000728
N256K256XAagTag11B.1.1890.004292
N256K256KaaGaaA11B.1.20.000009
N256K256TaAgaCg11B.1.20.000009
N256K256XAagTag11B.1.2060.000816
N256K256NaaGaaT11B.1.2210.000071
N256K256RaAgaGg11B.1.2210.000071
N256K256XAagTag11B.1.230.006061
N256K256KaaGaaA11B.1.2340.000132
N256K256NaaGaaT11B.1.2580.000067
N256K256KaaGaaA11B.1.258.140.00098
N256K256KaaGaaA11B.1.258.170.000104
N256K256NaaGaaT11B.1.258.170.000104
N256K256RaAgaGg11B.1.258.170.000104
N256K256XAagTag11B.1.258.40.003448
N256K256KaaGaaA11B.1.2790.000514
N256K256KaaGaaA11B.1.3110.000275
N256K256RaAgaGg11B.1.3130.006579
N256K256XAagTag11B.1.3380.008621
N256K256TaAgaCg11B.1.3490.000715
N256K256XAagTag11B.1.3500.002933
N256K256XAagTag11B.1.351.20.000303
N256K256XAagTag11B.1.36.170.000494
N256K256NaaGaaC11B.1.36.170.000494
N256K256MaAgaTg11B.1.36.270.000763
N256K256XAagTag11B.1.36.390.002217
N256K256XAagTag11B.1.3620.001541
N256K256delAAG---11B.1.3690.000285
N256K256XAagTag11B.1.4000.000429
N256K256KaaGaaA11B.1.4040.001302
N256K256KaaGaaA11B.1.4270.00005
N256K256MaAgaTg11B.1.4270.00005
N256K256XAagTag11B.1.4290.000024
N256K256QAagCag11B.1.4290.000024
N256K256delAAG---11B.1.4390.005917
N256K256KaaGaaA11B.1.4430.004673
N256K256NaaGaaC11B.1.4560.003268
N256K256KaaGaaA11B.1.4690.00361
N256K256KaaGaaA11B.1.5250.000113
N256K256NaaGaaT11B.1.5510.00129
N256K256XAagTag11B.1.5600.00463
N256K256del1Aag-ag11B.1.5600.00463
N256K256KaaGaaA11B.1.5640.000426
N256K256NaaGaaT11B.1.5740.002151
N256K256KaaGaaA11B.1.5880.00091
N256K256NaaGaaT11B.1.5950.000261
N256K256MaAgaTg11B.1.5960.000087
N256K256XAagTag11B.1.5960.000087
N256K256NaaGaaC11B.1.5960.000087
N256K256KaaGaaA11B.1.5960.000087
N256K256RaAGaGA11B.1.617.10.000129
N256K256del1Aag-ag11B.1.617.10.000129
N256K256MaAgaTg11B.1.617.20.000004
N256K256TaAgaCg11B.1.617.20.000004
N256K256delAAG---11B.1.617.20.000004
N256K256RaAgaGg11B.1.619.10.000641
N256K256NaaGaaT11B.1.6200.000946
N256K256delAAG---11B.1.6210.000089
N256K256XAagTag11B.230.002924
N256K256XAagTag11B.290.003509
N256K256NaaGaaT11B.4.50.011905
N256K256XAagTag11B.4.50.011905
N256K256XAagTag11B.60.00091
N256K256KaaGaaA11B.60.00091
N256K256XAagTag11B.610.005747
N256K256RaAgaGg11C.360.000911
N256K256NaaGaaT11C.370.000116
N256K256RaAgaGg11C.390.018868
N256K256MaAgaTg11D.20.000075
N256K256RaAgaGg11D.20.000075
N256K256KaaGaaA11D.40.066667
N256K256XAagTag11P.10.000016
N256K256NaaGaaT11P.10.000016
N256K256KaaGaaA11P.1.140.000048
N256K256XAagTag11P.1.150.000232
N256K256NaaGaaT11P.1.150.000232
N256K256NaaGaaT11P.1.160.000374
N256K256NaaGaaT11P.1.170.000162
N256K256KaaGaaA11P.1.40.000977
N256K256NaaGaaC11Q.10.000126
N256K256KaaGaaA11Q.30.000145
N256K256NaaGaaT11Q.30.000145
N256K256RaAgaGg11Q.40.000455