CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 256 | K256R | nonsyn | aAg | aGg | 932 | 928 | 0.995708 | 29039-29041 | |
N | 256 | K256R | nonsyn | aAG | aGA | 932 | 2 | 0.00214592 | 29039-29041 | |
N | 256 | K256R | nonsyn | AAg | CGg | 932 | 2 | 0.00214592 | 29039-29041 | |
N | 256 | K256N | nonsyn | aaG | aaT | 819 | 506 | 0.617827 | 29039-29041 | |
N | 256 | K256N | nonsyn | aaG | aaC | 819 | 313 | 0.382173 | 29039-29041 | |
N | 256 | K256X | nonsyn | Aag | Tag | 444 | 444 | 1 | 29039-29041 | |
N | 256 | K256K | syn | aaG | aaA | 357 | 357 | 1 | 29039-29041 | |
N | 256 | K256M | nonsyn | aAg | aTg | 54 | 54 | 1 | 29039-29041 | |
N | 256 | K256T | nonsyn | aAg | aCg | 16 | 16 | 1 | 29039-29041 | |
N | 256 | K256del | del | AAG | --- | 13 | 13 | 1 | 29039-29041 | |
N | 256 | K256del1 | del | Aag | -ag | 8 | 6 | 0.75 | 29039-29041 | |
N | 256 | K256del1 | del | aaG | aa- | 8 | 2 | 0.25 | 29039-29041 | |
N | 256 | K256E | nonsyn | Aag | Gag | 4 | 4 | 1 | 29039-29041 | |
N | 256 | K256Q | nonsyn | Aag | Cag | 3 | 3 | 1 | 29039-29041 | |
N | 256 | K256G | nonsyn | AAG | GGC | 2 | 2 | 1 | 29039-29041 | |
N | 256 | K256del2 | del | aAG | a-- | 1 | 1 | 1 | 29039-29041 | |
N | 256 | K256Y | nonsyn | AaG | TaC | 1 | 1 | 1 | 29039-29041 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 256 | K256R | aAg | aGg | 928 | 932 | All | 0.000177 |
N | 256 | K256R | aAG | aGA | 2 | 932 | All | 0 |
N | 256 | K256R | AAg | CGg | 2 | 932 | All | 0 |
N | 256 | K256N | aaG | aaT | 506 | 819 | All | 0.000097 |
N | 256 | K256N | aaG | aaC | 313 | 819 | All | 0.00006 |
N | 256 | K256X | Aag | Tag | 444 | 444 | All | 0.000085 |
N | 256 | K256K | aaG | aaA | 357 | 357 | All | 0.000068 |
N | 256 | K256R | aAg | aGg | 331 | 331 | C.36.3 | 0.187748 |
N | 256 | K256R | aAg | aGg | 320 | 320 | C.36.3.1 | 0.869565 |
N | 256 | K256X | Aag | Tag | 284 | 284 | B.1.1.7 | 0.000254 |
N | 256 | K256N | aaG | aaC | 151 | 154 | AY.114 | 0.034897 |
N | 256 | K256N | aaG | aaT | 3 | 154 | AY.114 | 0.000693 |
N | 256 | K256N | aaG | aaT | 97 | 125 | AY.4 | 0.000151 |
N | 256 | K256N | aaG | aaC | 28 | 125 | AY.4 | 0.000044 |
N | 256 | K256R | aAg | aGg | 124 | 124 | AY.4 | 0.000193 |
N | 256 | K256K | aaG | aaA | 72 | 72 | B.1.575 | 0.021845 |
N | 256 | K256K | aaG | aaA | 59 | 59 | AY.4 | 0.000092 |
N | 256 | K256M | aAg | aTg | 54 | 54 | All | 0.00001 |
N | 256 | K256K | aaG | aaA | 54 | 54 | B.1.1.7 | 0.000048 |
N | 256 | K256N | aaG | aaT | 49 | 51 | B.1.617.2 | 0.000185 |
N | 256 | K256N | aaG | aaC | 2 | 51 | B.1.617.2 | 0.000008 |
N | 256 | K256N | aaG | aaT | 37 | 47 | B.1.1.7 | 0.000033 |
N | 256 | K256N | aaG | aaC | 10 | 47 | B.1.1.7 | 0.000009 |
N | 256 | K256N | aaG | aaT | 44 | 44 | AY.43 | 0.000195 |
N | 256 | K256N | aaG | aaT | 34 | 40 | AY.103 | 0.000211 |
N | 256 | K256N | aaG | aaC | 6 | 40 | AY.103 | 0.000037 |
N | 256 | K256N | aaG | aaC | 28 | 34 | AY.20 | 0.001088 |
N | 256 | K256N | aaG | aaT | 6 | 34 | AY.20 | 0.000233 |
N | 256 | K256R | aAg | aGg | 31 | 31 | B.1.617.2 | 0.000117 |
N | 256 | K256N | aaG | aaT | 23 | 27 | AY.25 | 0.000138 |
N | 256 | K256N | aaG | aaC | 4 | 27 | AY.25 | 0.000024 |
N | 256 | K256N | aaG | aaT | 13 | 24 | AY.44 | 0.000079 |
N | 256 | K256N | aaG | aaC | 11 | 24 | AY.44 | 0.000067 |
N | 256 | K256N | aaG | aaC | 18 | 23 | B.1.526 | 0.000423 |
N | 256 | K256N | aaG | aaT | 5 | 23 | B.1.526 | 0.000118 |
N | 256 | K256M | aAg | aTg | 21 | 21 | AY.103 | 0.00013 |
N | 256 | K256X | Aag | Tag | 20 | 20 | B.1 | 0.000183 |
N | 256 | K256R | aAg | aGg | 18 | 18 | AY.100 | 0.000828 |
N | 256 | K256T | aAg | aCg | 16 | 16 | All | 0.000003 |
N | 256 | K256K | aaG | aaA | 16 | 16 | AY.43 | 0.000071 |
N | 256 | K256N | aaG | aaC | 9 | 14 | B.1 | 0.000082 |
N | 256 | K256N | aaG | aaT | 5 | 14 | B.1 | 0.000046 |
N | 256 | K256X | Aag | Tag | 14 | 14 | B.1.617.2 | 0.000053 |
N | 256 | K256del | AAG | --- | 13 | 13 | All | 0.000002 |
N | 256 | K256R | aAg | aGg | 13 | 13 | B.1 | 0.000119 |
N | 256 | K256K | aaG | aaA | 13 | 13 | B.1.617.2 | 0.000049 |
N | 256 | K256K | aaG | aaA | 13 | 13 | B.1.621 | 0.001151 |
N | 256 | K256X | Aag | Tag | 12 | 12 | AY.43 | 0.000053 |
N | 256 | K256N | aaG | aaC | 8 | 11 | B.1.1.519 | 0.000318 |
N | 256 | K256N | aaG | aaT | 3 | 11 | B.1.1.519 | 0.000119 |
N | 256 | K256N | aaG | aaT | 11 | 11 | B.1.2 | 0.000097 |
N | 256 | K256R | aAg | aGg | 10 | 10 | AY.118 | 0.000626 |
N | 256 | K256K | aaG | aaA | 10 | 10 | AY.46.6 | 0.000722 |
N | 256 | K256K | aaG | aaA | 9 | 9 | AY.25 | 0.000054 |
N | 256 | K256R | aAg | aGg | 9 | 9 | B.1.1.7 | 0.000008 |
N | 256 | K256del1 | Aag | -ag | 6 | 8 | All | 0.000001 |
N | 256 | K256del1 | aaG | aa- | 2 | 8 | All | 0 |
N | 256 | K256X | Aag | Tag | 8 | 8 | AY.4 | 0.000012 |
N | 256 | K256N | aaG | aaT | 6 | 8 | B.1.177 | 0.000079 |
N | 256 | K256N | aaG | aaC | 2 | 8 | B.1.177 | 0.000026 |
N | 256 | K256N | aaG | aaT | 8 | 8 | B.1.351 | 0.000238 |
N | 256 | K256N | aaG | aaT | 5 | 8 | D.2 | 0.000375 |
N | 256 | K256N | aaG | aaC | 3 | 8 | D.2 | 0.000225 |
N | 256 | K256N | aaG | aaT | 6 | 7 | AY.120 | 0.000223 |
N | 256 | K256N | aaG | aaC | 1 | 7 | AY.120 | 0.000037 |
N | 256 | K256K | aaG | aaA | 7 | 7 | AY.23 | 0.000488 |
N | 256 | K256N | aaG | aaT | 7 | 7 | AY.29 | 0.00011 |
N | 256 | K256R | aAg | aGg | 7 | 7 | AY.3 | 0.00007 |
N | 256 | K256N | aaG | aaT | 5 | 7 | AY.5 | 0.000103 |
N | 256 | K256N | aaG | aaC | 2 | 7 | AY.5 | 0.000041 |
N | 256 | K256R | aAg | aGg | 7 | 7 | AY.99.2 | 0.000645 |
N | 256 | K256X | Aag | Tag | 7 | 7 | B.1.177 | 0.000092 |
N | 256 | K256K | aaG | aaA | 7 | 7 | P.1.1 | 0.002224 |
N | 256 | K256N | aaG | aaT | 6 | 6 | AY.102 | 0.000159 |
N | 256 | K256N | aaG | aaT | 4 | 6 | AY.39 | 0.000099 |
N | 256 | K256N | aaG | aaC | 2 | 6 | AY.39 | 0.000049 |
N | 256 | K256R | aAg | aGg | 6 | 6 | AY.44 | 0.000037 |
N | 256 | K256N | aaG | aaT | 5 | 6 | AY.6 | 0.000206 |
N | 256 | K256N | aaG | aaC | 1 | 6 | AY.6 | 0.000041 |
N | 256 | K256N | aaG | aaT | 6 | 6 | AY.7.1 | 0.000676 |
N | 256 | K256N | aaG | aaC | 4 | 6 | B.1.1 | 0.000073 |
N | 256 | K256N | aaG | aaT | 2 | 6 | B.1.1 | 0.000036 |
N | 256 | K256X | Aag | Tag | 6 | 6 | B.1.351 | 0.000178 |
N | 256 | K256N | aaG | aaT | 5 | 5 | AY.100 | 0.00023 |
N | 256 | K256K | aaG | aaA | 5 | 5 | AY.103 | 0.000031 |
N | 256 | K256N | aaG | aaT | 5 | 5 | AY.121 | 0.000677 |
N | 256 | K256X | Aag | Tag | 5 | 5 | AY.33 | 0.000334 |
N | 256 | K256N | aaG | aaT | 5 | 5 | AY.33 | 0.000334 |
N | 256 | K256M | aAg | aTg | 5 | 5 | AY.4 | 0.000008 |
N | 256 | K256R | aAg | aGg | 5 | 5 | AY.43 | 0.000022 |
N | 256 | K256K | aaG | aaA | 5 | 5 | AY.55 | 0.004587 |
N | 256 | K256M | aAg | aTg | 5 | 5 | B.1.1.7 | 0.000004 |
N | 256 | K256N | aaG | aaT | 4 | 5 | B.1.160 | 0.000125 |
N | 256 | K256N | aaG | aaC | 1 | 5 | B.1.160 | 0.000031 |
N | 256 | K256X | Aag | Tag | 5 | 5 | B.1.177.12 | 0.000758 |
N | 256 | K256K | aaG | aaA | 5 | 5 | B.1.526 | 0.000118 |
N | 256 | K256K | aaG | aaA | 5 | 5 | P.1 | 0.000079 |
N | 256 | K256E | Aag | Gag | 4 | 4 | All | 0.000001 |
N | 256 | K256T | aAg | aCg | 4 | 4 | AY.103 | 0.000025 |
N | 256 | K256N | aaG | aaT | 4 | 4 | AY.3 | 0.00004 |
N | 256 | K256N | aaG | aaT | 3 | 4 | AY.36 | 0.000445 |
N | 256 | K256N | aaG | aaC | 1 | 4 | AY.36 | 0.000148 |
N | 256 | K256X | Aag | Tag | 4 | 4 | AY.39.1 | 0.000158 |
N | 256 | K256X | Aag | Tag | 4 | 4 | B | 0.000511 |
N | 256 | K256X | Aag | Tag | 4 | 4 | B.1.1 | 0.000073 |
N | 256 | K256X | Aag | Tag | 4 | 4 | B.1.389 | 0.004008 |
N | 256 | K256X | Aag | Tag | 4 | 4 | Q.1 | 0.000505 |
N | 256 | K256Q | Aag | Cag | 3 | 3 | All | 0.000001 |
N | 256 | K256K | aaG | aaA | 3 | 3 | AY.100 | 0.000138 |
N | 256 | K256R | aAg | aGg | 3 | 3 | AY.117 | 0.000254 |
N | 256 | K256N | aaG | aaT | 3 | 3 | AY.118 | 0.000188 |
N | 256 | K256N | aaG | aaT | 2 | 3 | AY.119 | 0.000071 |
N | 256 | K256N | aaG | aaC | 1 | 3 | AY.119 | 0.000035 |
N | 256 | K256T | aAg | aCg | 3 | 3 | AY.36 | 0.000445 |
N | 256 | K256R | aAg | aGg | 3 | 3 | AY.39 | 0.000074 |
N | 256 | K256N | aaG | aaT | 3 | 3 | AY.46 | 0.000312 |
N | 256 | K256N | aaG | aaT | 3 | 3 | AY.46.2 | 0.001906 |
N | 256 | K256N | aaG | aaT | 3 | 3 | AY.78 | 0.004622 |
N | 256 | K256K | aaG | aaA | 3 | 3 | B.1 | 0.000027 |
N | 256 | K256R | aAg | aGg | 3 | 3 | B.1.1 | 0.000054 |
N | 256 | K256N | aaG | aaT | 2 | 3 | B.1.1.369 | 0.000892 |
N | 256 | K256N | aaG | aaC | 1 | 3 | B.1.1.369 | 0.000446 |
N | 256 | K256K | aaG | aaA | 3 | 3 | B.1.1.513 | 0.037037 |
N | 256 | K256del1 | aaG | aa- | 2 | 3 | B.1.1.7 | 0.000002 |
N | 256 | K256del1 | Aag | -ag | 1 | 3 | B.1.1.7 | 0.000001 |
N | 256 | K256N | aaG | aaT | 3 | 3 | B.1.177.7 | 0.000495 |
N | 256 | K256N | aaG | aaT | 3 | 3 | B.1.177.73 | 0.001699 |
N | 256 | K256K | aaG | aaA | 3 | 3 | B.1.429 | 0.000071 |
N | 256 | K256R | aAg | aGg | 3 | 3 | P.1 | 0.000047 |
N | 256 | K256K | aaG | aaA | 3 | 3 | P.1.7 | 0.000958 |
N | 256 | K256G | AAG | GGC | 2 | 2 | 0.111111 | |
N | 256 | K256R | AAg | CGg | 2 | 2 | 0.111111 | |
N | 256 | K256X | Aag | Tag | 2 | 2 | A.7 | 0.111111 |
N | 256 | K256G | AAG | GGC | 2 | 2 | All | 0 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AP.1 | 0.003003 |
N | 256 | K256K | aaG | aaA | 2 | 2 | AY.102 | 0.000053 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AY.109 | 0.001479 |
N | 256 | K256R | aAg | aGg | 2 | 2 | AY.113 | 0.000285 |
N | 256 | K256X | Aag | Tag | 2 | 2 | AY.120 | 0.000074 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AY.14 | 0.000176 |
N | 256 | K256T | aAg | aCg | 2 | 2 | AY.20 | 0.000078 |
N | 256 | K256X | Aag | Tag | 2 | 2 | AY.23 | 0.000139 |
N | 256 | K256N | aaG | aaT | 1 | 2 | AY.23 | 0.00007 |
N | 256 | K256N | aaG | aaC | 1 | 2 | AY.23 | 0.00007 |
N | 256 | K256del | AAG | --- | 2 | 2 | AY.25 | 0.000012 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AY.26 | 0.000057 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AY.29.1 | 0.000441 |
N | 256 | K256M | aAg | aTg | 2 | 2 | AY.33 | 0.000134 |
N | 256 | K256N | aaG | aaC | 2 | 2 | AY.39.2 | 0.003082 |
N | 256 | K256K | aaG | aaA | 2 | 2 | AY.4.2 | 0.000043 |
N | 256 | K256N | aaG | aaT | 1 | 2 | AY.4.4 | 0.000409 |
N | 256 | K256N | aaG | aaC | 1 | 2 | AY.4.4 | 0.000409 |
N | 256 | K256X | Aag | Tag | 2 | 2 | AY.42 | 0.00008 |
N | 256 | K256N | aaG | aaT | 1 | 2 | AY.42 | 0.00004 |
N | 256 | K256N | aaG | aaC | 1 | 2 | AY.42 | 0.00004 |
N | 256 | K256R | aAg | aGg | 2 | 2 | AY.47 | 0.000062 |
N | 256 | K256K | aaG | aaA | 2 | 2 | AY.5.3 | 0.000675 |
N | 256 | K256K | aaG | aaA | 2 | 2 | AY.51 | 0.001818 |
N | 256 | K256K | aaG | aaA | 2 | 2 | AY.61 | 0.00021 |
N | 256 | K256X | Aag | Tag | 2 | 2 | AY.7.1 | 0.000225 |
N | 256 | K256N | aaG | aaC | 1 | 2 | AY.75 | 0.000056 |
N | 256 | K256N | aaG | aaT | 1 | 2 | AY.75 | 0.000056 |
N | 256 | K256N | aaG | aaC | 1 | 2 | AY.9 | 0.000068 |
N | 256 | K256N | aaG | aaT | 1 | 2 | AY.9 | 0.000068 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AY.91 | 0.001461 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AY.98 | 0.000158 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AY.98.1 | 0.000097 |
N | 256 | K256N | aaG | aaT | 2 | 2 | AY.99.2 | 0.000184 |
N | 256 | K256N | aaG | aaT | 2 | 2 | B | 0.000256 |
N | 256 | K256K | aaG | aaA | 2 | 2 | B.1.1 | 0.000036 |
N | 256 | K256R | aAg | aGg | 2 | 2 | B.1.1.1 | 0.000653 |
N | 256 | K256K | aaG | aaA | 2 | 2 | B.1.1.148 | 0.017544 |
N | 256 | K256R | aAg | aGg | 2 | 2 | B.1.1.222 | 0.000408 |
N | 256 | K256X | Aag | Tag | 2 | 2 | B.1.1.25 | 0.001137 |
N | 256 | K256R | aAg | aGg | 2 | 2 | B.1.1.294 | 0.002532 |
N | 256 | K256K | aaG | aaA | 2 | 2 | B.1.1.306 | 0.000877 |
N | 256 | K256N | aaG | aaT | 1 | 2 | B.1.1.311 | 0.000358 |
N | 256 | K256N | aaG | aaC | 1 | 2 | B.1.1.311 | 0.000358 |
N | 256 | K256K | aaG | aaA | 2 | 2 | B.1.177 | 0.000026 |
N | 256 | K256N | aaG | aaC | 1 | 2 | B.1.177.57 | 0.000281 |
N | 256 | K256N | aaG | aaT | 1 | 2 | B.1.177.57 | 0.000281 |
N | 256 | K256X | Aag | Tag | 2 | 2 | B.1.2 | 0.000018 |
N | 256 | K256R | aAg | aGg | 2 | 2 | B.1.2 | 0.000018 |
N | 256 | K256M | aAg | aTg | 2 | 2 | B.1.2 | 0.000018 |
N | 256 | K256R | aAg | aGg | 2 | 2 | B.1.396 | 0.001411 |
N | 256 | K256X | Aag | Tag | 2 | 2 | B.1.427 | 0.000101 |
N | 256 | K256N | aaG | aaC | 2 | 2 | B.1.438.1 | 0.000215 |
N | 256 | K256K | aaG | aaA | 2 | 2 | B.1.466.2 | 0.000782 |
N | 256 | K256N | aaG | aaT | 2 | 2 | B.1.525 | 0.000226 |
N | 256 | K256R | aAg | aGg | 2 | 2 | B.1.526 | 0.000047 |
N | 256 | K256X | Aag | Tag | 2 | 2 | B.1.526 | 0.000047 |
N | 256 | K256K | aaG | aaA | 2 | 2 | B.1.595 | 0.000522 |
N | 256 | K256K | aaG | aaA | 2 | 2 | B.1.623 | 0.001073 |
N | 256 | K256X | Aag | Tag | 2 | 2 | B.4 | 0.004415 |
N | 256 | K256N | aaG | aaT | 2 | 2 | B.6 | 0.00182 |
N | 256 | K256E | Aag | Gag | 2 | 2 | D.2 | 0.00015 |
N | 256 | K256N | aaG | aaC | 1 | 2 | P.1.14 | 0.000048 |
N | 256 | K256N | aaG | aaT | 1 | 2 | P.1.14 | 0.000048 |
N | 256 | K256K | aaG | aaA | 2 | 2 | P.1.17 | 0.000324 |
N | 256 | K256X | Aag | Tag | 1 | 1 | A | 0.000387 |
N | 256 | K256N | aaG | aaC | 1 | 1 | A.2.2 | 0.001689 |
N | 256 | K256R | aAg | aGg | 1 | 1 | A.2.5.2 | 0.001572 |
N | 256 | K256Y | AaG | TaC | 1 | 1 | All | 0 |
N | 256 | K256del2 | aAG | a-- | 1 | 1 | All | 0 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AP.1 | 0.001502 |
N | 256 | K256del | AAG | --- | 1 | 1 | AY.100 | 0.000046 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.102 | 0.000027 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.103 | 0.000006 |
N | 256 | K256del1 | Aag | -ag | 1 | 1 | AY.108 | 0.001103 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AY.110 | 0.000113 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.111 | 0.000183 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.113 | 0.000142 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AY.113 | 0.000142 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.117 | 0.000085 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.12 | 0.000316 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.121 | 0.000135 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AY.121 | 0.000135 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AY.13 | 0.000161 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.13 | 0.000161 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.16.1 | 0.00047 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.16.1 | 0.00047 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.20 | 0.000039 |
N | 256 | K256Y | AaG | TaC | 1 | 1 | AY.23 | 0.00007 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.23 | 0.00007 |
N | 256 | K256T | aAg | aCg | 1 | 1 | AY.25 | 0.000006 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.25 | 0.000006 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.25 | 0.000006 |
N | 256 | K256Q | Aag | Cag | 1 | 1 | AY.25 | 0.000006 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AY.26 | 0.000028 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.27 | 0.000065 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.27 | 0.000065 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.27 | 0.000065 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.32 | 0.000532 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.34 | 0.000097 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.37 | 0.000316 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.39 | 0.000025 |
N | 256 | K256N | aaG | aaC | 1 | 1 | AY.39.1 | 0.00004 |
N | 256 | K256Q | Aag | Cag | 1 | 1 | AY.4 | 0.000002 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.4.1 | 0.000737 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.4.2 | 0.000022 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.4.5 | 0.000107 |
N | 256 | K256T | aAg | aCg | 1 | 1 | AY.43 | 0.000004 |
N | 256 | K256del | AAG | --- | 1 | 1 | AY.44 | 0.000006 |
N | 256 | K256del1 | Aag | -ag | 1 | 1 | AY.44 | 0.000006 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.44 | 0.000006 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AY.45 | 0.000122 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.46 | 0.000104 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.46 | 0.000104 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.46.5 | 0.000198 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.46.6 | 0.000072 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.5 | 0.000021 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.5.3 | 0.000337 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AY.6 | 0.000041 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.61 | 0.000105 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.61 | 0.000105 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.61 | 0.000105 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.68 | 0.000274 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.7.2 | 0.000559 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.70 | 0.000209 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.71 | 0.000475 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.71 | 0.000475 |
N | 256 | K256del | AAG | --- | 1 | 1 | AY.75 | 0.000056 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.75 | 0.000056 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.75.1 | 0.00018 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.88 | 0.000884 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.9 | 0.000068 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.9.1 | 0.000084 |
N | 256 | K256del | AAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 256 | K256R | aAg | aGg | 1 | 1 | AY.9.2 | 0.000037 |
N | 256 | K256X | Aag | Tag | 1 | 1 | AY.9.2 | 0.000037 |
N | 256 | K256N | aaG | aaT | 1 | 1 | AY.93 | 0.000273 |
N | 256 | K256K | aaG | aaA | 1 | 1 | AY.94 | 0.000443 |
N | 256 | K256M | aAg | aTg | 1 | 1 | AY.99.2 | 0.000092 |
N | 256 | K256del2 | aAG | a-- | 1 | 1 | B | 0.000128 |
N | 256 | K256del1 | Aag | -ag | 1 | 1 | B.1 | 0.000009 |
N | 256 | K256M | aAg | aTg | 1 | 1 | B.1 | 0.000009 |
N | 256 | K256del | AAG | --- | 1 | 1 | B.1 | 0.000009 |
N | 256 | K256T | aAg | aCg | 1 | 1 | B.1 | 0.000009 |
N | 256 | K256del | AAG | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.1.1 | 0.000327 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.1.172 | 0.018182 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.1.181 | 0.004545 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.1.189 | 0.001513 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.1.214 | 0.000055 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.1.214 | 0.000055 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.1.227 | 0.004348 |
N | 256 | K256R | aAG | aGA | 1 | 1 | B.1.1.27 | 0.00565 |
N | 256 | K256R | aAg | aGg | 1 | 1 | B.1.1.28 | 0.000311 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.1.28 | 0.000311 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.1.298 | 0.000862 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.1.303 | 0.002762 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.1.306 | 0.000438 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.1.348 | 0.000796 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.1.37 | 0.000193 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.1.433 | 0.001425 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.1.434 | 0.000349 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.1.450 | 0.034483 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.1.519 | 0.00004 |
N | 256 | K256E | Aag | Gag | 1 | 1 | B.1.1.7 | 0.000001 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.1.70 | 0.000341 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.1.89 | 0.006061 |
N | 256 | K256M | aAg | aTg | 1 | 1 | B.1.105 | 0.009615 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.147 | 0.000756 |
N | 256 | K256T | aAg | aCg | 1 | 1 | B.1.160 | 0.000031 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.160.7 | 0.002079 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.177.21 | 0.000076 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.177.52 | 0.001757 |
N | 256 | K256E | Aag | Gag | 1 | 1 | B.1.177.63 | 0.002703 |
N | 256 | K256del | AAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 256 | K256N | aaG | aaC | 1 | 1 | B.1.177.87 | 0.000728 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.189 | 0.004292 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.2 | 0.000009 |
N | 256 | K256T | aAg | aCg | 1 | 1 | B.1.2 | 0.000009 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.206 | 0.000816 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.221 | 0.000071 |
N | 256 | K256R | aAg | aGg | 1 | 1 | B.1.221 | 0.000071 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.23 | 0.006061 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.234 | 0.000132 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.258 | 0.000067 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.258.14 | 0.00098 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.258.17 | 0.000104 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.258.17 | 0.000104 |
N | 256 | K256R | aAg | aGg | 1 | 1 | B.1.258.17 | 0.000104 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.258.4 | 0.003448 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.279 | 0.000514 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.311 | 0.000275 |
N | 256 | K256R | aAg | aGg | 1 | 1 | B.1.313 | 0.006579 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.338 | 0.008621 |
N | 256 | K256T | aAg | aCg | 1 | 1 | B.1.349 | 0.000715 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.350 | 0.002933 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.351.2 | 0.000303 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.36.17 | 0.000494 |
N | 256 | K256N | aaG | aaC | 1 | 1 | B.1.36.17 | 0.000494 |
N | 256 | K256M | aAg | aTg | 1 | 1 | B.1.36.27 | 0.000763 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.36.39 | 0.002217 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.362 | 0.001541 |
N | 256 | K256del | AAG | --- | 1 | 1 | B.1.369 | 0.000285 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.400 | 0.000429 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.404 | 0.001302 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.427 | 0.00005 |
N | 256 | K256M | aAg | aTg | 1 | 1 | B.1.427 | 0.00005 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.429 | 0.000024 |
N | 256 | K256Q | Aag | Cag | 1 | 1 | B.1.429 | 0.000024 |
N | 256 | K256del | AAG | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.443 | 0.004673 |
N | 256 | K256N | aaG | aaC | 1 | 1 | B.1.456 | 0.003268 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.469 | 0.00361 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.525 | 0.000113 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.551 | 0.00129 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.560 | 0.00463 |
N | 256 | K256del1 | Aag | -ag | 1 | 1 | B.1.560 | 0.00463 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.564 | 0.000426 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.574 | 0.002151 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.588 | 0.00091 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.595 | 0.000261 |
N | 256 | K256M | aAg | aTg | 1 | 1 | B.1.596 | 0.000087 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.1.596 | 0.000087 |
N | 256 | K256N | aaG | aaC | 1 | 1 | B.1.596 | 0.000087 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.1.596 | 0.000087 |
N | 256 | K256R | aAG | aGA | 1 | 1 | B.1.617.1 | 0.000129 |
N | 256 | K256del1 | Aag | -ag | 1 | 1 | B.1.617.1 | 0.000129 |
N | 256 | K256M | aAg | aTg | 1 | 1 | B.1.617.2 | 0.000004 |
N | 256 | K256T | aAg | aCg | 1 | 1 | B.1.617.2 | 0.000004 |
N | 256 | K256del | AAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 256 | K256R | aAg | aGg | 1 | 1 | B.1.619.1 | 0.000641 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.1.620 | 0.000946 |
N | 256 | K256del | AAG | --- | 1 | 1 | B.1.621 | 0.000089 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.23 | 0.002924 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.29 | 0.003509 |
N | 256 | K256N | aaG | aaT | 1 | 1 | B.4.5 | 0.011905 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.4.5 | 0.011905 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.6 | 0.00091 |
N | 256 | K256K | aaG | aaA | 1 | 1 | B.6 | 0.00091 |
N | 256 | K256X | Aag | Tag | 1 | 1 | B.61 | 0.005747 |
N | 256 | K256R | aAg | aGg | 1 | 1 | C.36 | 0.000911 |
N | 256 | K256N | aaG | aaT | 1 | 1 | C.37 | 0.000116 |
N | 256 | K256R | aAg | aGg | 1 | 1 | C.39 | 0.018868 |
N | 256 | K256M | aAg | aTg | 1 | 1 | D.2 | 0.000075 |
N | 256 | K256R | aAg | aGg | 1 | 1 | D.2 | 0.000075 |
N | 256 | K256K | aaG | aaA | 1 | 1 | D.4 | 0.066667 |
N | 256 | K256X | Aag | Tag | 1 | 1 | P.1 | 0.000016 |
N | 256 | K256N | aaG | aaT | 1 | 1 | P.1 | 0.000016 |
N | 256 | K256K | aaG | aaA | 1 | 1 | P.1.14 | 0.000048 |
N | 256 | K256X | Aag | Tag | 1 | 1 | P.1.15 | 0.000232 |
N | 256 | K256N | aaG | aaT | 1 | 1 | P.1.15 | 0.000232 |
N | 256 | K256N | aaG | aaT | 1 | 1 | P.1.16 | 0.000374 |
N | 256 | K256N | aaG | aaT | 1 | 1 | P.1.17 | 0.000162 |
N | 256 | K256K | aaG | aaA | 1 | 1 | P.1.4 | 0.000977 |
N | 256 | K256N | aaG | aaC | 1 | 1 | Q.1 | 0.000126 |
N | 256 | K256K | aaG | aaA | 1 | 1 | Q.3 | 0.000145 |
N | 256 | K256N | aaG | aaT | 1 | 1 | Q.3 | 0.000145 |
N | 256 | K256R | aAg | aGg | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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