CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 253 | E253D | nonsyn | gaG | gaT | 858 | 815 | 0.949883 | 29030-29032 | |
N | 253 | E253D | nonsyn | gaG | gaC | 858 | 43 | 0.0501166 | 29030-29032 | |
N | 253 | E253E | syn | gaG | gaA | 764 | 764 | 1 | 29030-29032 | |
N | 253 | E253X | nonsyn | Gag | Tag | 140 | 140 | 1 | 29030-29032 | |
N | 253 | E253G | nonsyn | gAg | gGg | 124 | 124 | 1 | 29030-29032 | |
N | 253 | E253K | nonsyn | Gag | Aag | 78 | 78 | 1 | 29030-29032 | |
N | 253 | E253V | nonsyn | gAg | gTg | 77 | 77 | 1 | 29030-29032 | |
N | 253 | E253A | nonsyn | gAg | gCg | 66 | 65 | 0.984848 | 29030-29032 | |
N | 253 | E253A | nonsyn | gAG | gCT | 66 | 1 | 0.0151515 | 29030-29032 | |
N | 253 | E253del | del | GAG | --- | 41 | 41 | 1 | 29030-29032 | |
N | 253 | E253Q | nonsyn | Gag | Cag | 26 | 25 | 0.961538 | 29030-29032 | |
N | 253 | E253Q | nonsyn | GaG | CaA | 26 | 1 | 0.0384615 | 29030-29032 | |
N | 253 | E253del1 | del | gaG | ga- | 25 | 19 | 0.76 | 29030-29032 | |
N | 253 | E253del1 | del | Gag | -ag | 25 | 3 | 0.12 | 29030-29032 | |
N | 253 | E253del1 | del | gAg | g-g | 25 | 3 | 0.12 | 29030-29032 | |
N | 253 | E253Y | nonsyn | GaG | TaT | 5 | 5 | 1 | 29030-29032 | |
N | 253 | E253del2 | del | GAg | --g | 2 | 2 | 1 | 29030-29032 | |
N | 253 | E253R | nonsyn | GAg | AGg | 2 | 2 | 1 | 29030-29032 | |
N | 253 | E253N | nonsyn | GaG | AaC | 1 | 1 | 1 | 29030-29032 | |
N | 253 | E253M | nonsyn | GAg | ATg | 1 | 1 | 1 | 29030-29032 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 253 | E253D | gaG | gaT | 815 | 858 | All | 0.000156 |
N | 253 | E253D | gaG | gaC | 43 | 858 | All | 0.000008 |
N | 253 | E253E | gaG | gaA | 764 | 764 | All | 0.000146 |
N | 253 | E253E | gaG | gaA | 161 | 161 | AY.29 | 0.00254 |
N | 253 | E253D | gaG | gaT | 143 | 143 | B.1.36.36 | 0.086093 |
N | 253 | E253X | Gag | Tag | 140 | 140 | All | 0.000027 |
N | 253 | E253G | gAg | gGg | 124 | 124 | All | 0.000024 |
N | 253 | E253E | gaG | gaA | 91 | 91 | B.1.1.7 | 0.000081 |
N | 253 | E253E | gaG | gaA | 89 | 89 | AY.4 | 0.000139 |
N | 253 | E253D | gaG | gaT | 78 | 81 | B.1.1.7 | 0.00007 |
N | 253 | E253D | gaG | gaC | 3 | 81 | B.1.1.7 | 0.000003 |
N | 253 | E253K | Gag | Aag | 78 | 78 | All | 0.000015 |
N | 253 | E253V | gAg | gTg | 77 | 77 | All | 0.000015 |
N | 253 | E253D | gaG | gaT | 59 | 68 | AY.4 | 0.000092 |
N | 253 | E253D | gaG | gaC | 9 | 68 | AY.4 | 0.000014 |
N | 253 | E253A | gAg | gCg | 65 | 66 | All | 0.000012 |
N | 253 | E253A | gAG | gCT | 1 | 66 | All | 0 |
N | 253 | E253E | gaG | gaA | 65 | 65 | B.27 | 1 |
N | 253 | E253E | gaG | gaA | 48 | 48 | B.1.617.2 | 0.000181 |
N | 253 | E253D | gaG | gaT | 34 | 45 | B.1 | 0.000311 |
N | 253 | E253D | gaG | gaC | 11 | 45 | B.1 | 0.000101 |
N | 253 | E253D | gaG | gaT | 41 | 42 | B.1.617.2 | 0.000154 |
N | 253 | E253D | gaG | gaC | 1 | 42 | B.1.617.2 | 0.000004 |
N | 253 | E253del | GAG | --- | 41 | 41 | All | 0.000008 |
N | 253 | E253E | gaG | gaA | 37 | 37 | AY.33 | 0.002471 |
N | 253 | E253E | gaG | gaA | 37 | 37 | AY.43 | 0.000164 |
N | 253 | E253K | Gag | Aag | 36 | 36 | AY.4 | 0.000056 |
N | 253 | E253D | gaG | gaT | 35 | 35 | AY.103 | 0.000217 |
N | 253 | E253E | gaG | gaA | 34 | 34 | B.1.2 | 0.000299 |
N | 253 | E253D | gaG | gaT | 32 | 32 | AY.43 | 0.000142 |
N | 253 | E253D | gaG | gaT | 28 | 28 | AY.44 | 0.00017 |
N | 253 | E253Q | Gag | Cag | 25 | 26 | All | 0.000005 |
N | 253 | E253Q | GaG | CaA | 1 | 26 | All | 0 |
N | 253 | E253del1 | gaG | ga- | 19 | 25 | All | 0.000004 |
N | 253 | E253del1 | Gag | -ag | 3 | 25 | All | 0.000001 |
N | 253 | E253del1 | gAg | g-g | 3 | 25 | All | 0.000001 |
N | 253 | E253G | gAg | gGg | 24 | 24 | B.1.617.2 | 0.00009 |
N | 253 | E253D | gaG | gaT | 21 | 21 | P.1 | 0.000331 |
N | 253 | E253E | gaG | gaA | 18 | 18 | B.1 | 0.000165 |
N | 253 | E253D | gaG | gaT | 16 | 17 | AY.39 | 0.000395 |
N | 253 | E253D | gaG | gaC | 1 | 17 | AY.39 | 0.000025 |
N | 253 | E253D | gaG | gaT | 16 | 16 | AY.100 | 0.000736 |
N | 253 | E253G | gAg | gGg | 16 | 16 | AY.4 | 0.000025 |
N | 253 | E253X | Gag | Tag | 16 | 16 | B.1.1.7 | 0.000014 |
N | 253 | E253V | gAg | gTg | 15 | 15 | AY.4 | 0.000023 |
N | 253 | E253D | gaG | gaT | 15 | 15 | AY.47 | 0.000467 |
N | 253 | E253E | gaG | gaA | 14 | 14 | AY.44 | 0.000085 |
N | 253 | E253G | gAg | gGg | 14 | 14 | B.1.1.7 | 0.000013 |
N | 253 | E253X | Gag | Tag | 14 | 14 | B.1.36.29 | 0.007243 |
N | 253 | E253D | gaG | gaT | 12 | 12 | AY.25 | 0.000072 |
N | 253 | E253D | gaG | gaT | 10 | 12 | B.1.177 | 0.000132 |
N | 253 | E253D | gaG | gaC | 2 | 12 | B.1.177 | 0.000026 |
N | 253 | E253Q | Gag | Cag | 10 | 11 | AY.4 | 0.000016 |
N | 253 | E253Q | GaG | CaA | 1 | 11 | AY.4 | 0.000002 |
N | 253 | E253D | gaG | gaT | 10 | 11 | B.1.1 | 0.000181 |
N | 253 | E253D | gaG | gaC | 1 | 11 | B.1.1 | 0.000018 |
N | 253 | E253K | Gag | Aag | 11 | 11 | B.1.1.7 | 0.00001 |
N | 253 | E253D | gaG | gaT | 11 | 11 | B.1.2 | 0.000097 |
N | 253 | E253D | gaG | gaT | 10 | 10 | AY.102 | 0.000265 |
N | 253 | E253E | gaG | gaA | 10 | 10 | AY.25 | 0.00006 |
N | 253 | E253G | gAg | gGg | 10 | 10 | AY.3 | 0.000099 |
N | 253 | E253E | gaG | gaA | 10 | 10 | AY.39 | 0.000247 |
N | 253 | E253X | Gag | Tag | 10 | 10 | AY.4 | 0.000016 |
N | 253 | E253D | gaG | gaT | 10 | 10 | B.1.568 | 0.011111 |
N | 253 | E253E | gaG | gaA | 10 | 10 | P.1.14 | 0.000478 |
N | 253 | E253D | gaG | gaT | 10 | 10 | R.1 | 0.0009 |
N | 253 | E253A | gAg | gCg | 9 | 9 | AY.4 | 0.000014 |
N | 253 | E253D | gaG | gaT | 9 | 9 | AY.4.2 | 0.000195 |
N | 253 | E253X | Gag | Tag | 9 | 9 | B.1 | 0.000082 |
N | 253 | E253E | gaG | gaA | 9 | 9 | B.1.1 | 0.000163 |
N | 253 | E253D | gaG | gaT | 9 | 9 | B.1.258 | 0.000599 |
N | 253 | E253X | Gag | Tag | 8 | 8 | B.1.1 | 0.000145 |
N | 253 | E253V | gAg | gTg | 8 | 8 | B.1.1.7 | 0.000007 |
N | 253 | E253V | gAg | gTg | 8 | 8 | B.1.1.70 | 0.002729 |
N | 253 | E253D | gaG | gaT | 8 | 8 | B.1.362.2 | 0.037736 |
N | 253 | E253E | gaG | gaA | 8 | 8 | B.1.596 | 0.000697 |
N | 253 | E253G | gAg | gGg | 7 | 7 | AD.2 | 0.001533 |
N | 253 | E253D | gaG | gaT | 6 | 7 | AY.5 | 0.000124 |
N | 253 | E253D | gaG | gaC | 1 | 7 | AY.5 | 0.000021 |
N | 253 | E253D | gaG | gaT | 7 | 7 | AY.84 | 0.003062 |
N | 253 | E253A | gAg | gCg | 7 | 7 | B.1.1.7 | 0.000006 |
N | 253 | E253X | Gag | Tag | 7 | 7 | B.1.177 | 0.000092 |
N | 253 | E253D | gaG | gaT | 6 | 6 | AY.20 | 0.000233 |
N | 253 | E253D | gaG | gaT | 6 | 6 | AY.3 | 0.00006 |
N | 253 | E253E | gaG | gaA | 6 | 6 | AY.3 | 0.00006 |
N | 253 | E253D | gaG | gaT | 6 | 6 | AY.45 | 0.00073 |
N | 253 | E253E | gaG | gaA | 6 | 6 | B.1.243 | 0.000418 |
N | 253 | E253D | gaG | gaC | 6 | 6 | B.1.369 | 0.001711 |
N | 253 | E253X | Gag | Tag | 6 | 6 | D.2 | 0.00045 |
N | 253 | E253Y | GaG | TaT | 5 | 5 | All | 0.000001 |
N | 253 | E253E | gaG | gaA | 5 | 5 | AY.103 | 0.000031 |
N | 253 | E253D | gaG | gaT | 5 | 5 | AY.111 | 0.000916 |
N | 253 | E253D | gaG | gaT | 5 | 5 | AY.120 | 0.000186 |
N | 253 | E253D | gaG | gaT | 5 | 5 | AY.23 | 0.000349 |
N | 253 | E253D | gaG | gaT | 5 | 5 | AY.26 | 0.000142 |
N | 253 | E253E | gaG | gaA | 5 | 5 | AY.26 | 0.000142 |
N | 253 | E253D | gaG | gaT | 5 | 5 | AY.7.1 | 0.000564 |
N | 253 | E253del1 | gaG | ga- | 3 | 5 | B.1 | 0.000027 |
N | 253 | E253del1 | Gag | -ag | 2 | 5 | B.1 | 0.000018 |
N | 253 | E253del | GAG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
N | 253 | E253D | gaG | gaT | 5 | 5 | B.1.429 | 0.000118 |
N | 253 | E253D | gaG | gaT | 4 | 4 | AD.2 | 0.000876 |
N | 253 | E253V | gAg | gTg | 4 | 4 | AY.20 | 0.000155 |
N | 253 | E253G | gAg | gGg | 4 | 4 | AY.43 | 0.000018 |
N | 253 | E253E | gaG | gaA | 4 | 4 | AY.5 | 0.000083 |
N | 253 | E253D | gaG | gaT | 4 | 4 | AY.6 | 0.000165 |
N | 253 | E253A | gAg | gCg | 4 | 4 | AY.73 | 0.002661 |
N | 253 | E253E | gaG | gaA | 4 | 4 | B | 0.000511 |
N | 253 | E253V | gAg | gTg | 4 | 4 | B.1 | 0.000037 |
N | 253 | E253A | gAg | gCg | 4 | 4 | B.1.1.369 | 0.001785 |
N | 253 | E253D | gaG | gaT | 3 | 4 | B.1.1.519 | 0.000119 |
N | 253 | E253D | gaG | gaC | 1 | 4 | B.1.1.519 | 0.00004 |
N | 253 | E253X | Gag | Tag | 4 | 4 | B.1.2 | 0.000035 |
N | 253 | E253X | Gag | Tag | 4 | 4 | B.1.258.17 | 0.000416 |
N | 253 | E253D | gaG | gaT | 4 | 4 | B.1.351 | 0.000119 |
N | 253 | E253A | gAg | gCg | 4 | 4 | B.1.416 | 0.005076 |
N | 253 | E253D | gaG | gaT | 4 | 4 | B.1.526 | 0.000094 |
N | 253 | E253D | gaG | gaT | 4 | 4 | B.1.617.1 | 0.000516 |
N | 253 | E253E | gaG | gaA | 4 | 4 | P.1 | 0.000063 |
N | 253 | E253E | gaG | gaA | 4 | 4 | P.1.17 | 0.000647 |
N | 253 | E253V | gAg | gTg | 3 | 3 | AY.102 | 0.00008 |
N | 253 | E253del | GAG | --- | 3 | 3 | AY.103 | 0.000019 |
N | 253 | E253V | gAg | gTg | 3 | 3 | AY.116 | 0.00086 |
N | 253 | E253E | gaG | gaA | 3 | 3 | AY.12 | 0.000948 |
N | 253 | E253E | gaG | gaA | 3 | 3 | AY.120 | 0.000112 |
N | 253 | E253D | gaG | gaT | 3 | 3 | AY.121 | 0.000406 |
N | 253 | E253del | GAG | --- | 3 | 3 | AY.25 | 0.000018 |
N | 253 | E253G | gAg | gGg | 3 | 3 | AY.39 | 0.000074 |
N | 253 | E253V | gAg | gTg | 3 | 3 | AY.4.2 | 0.000065 |
N | 253 | E253A | gAg | gCg | 3 | 3 | AY.43 | 0.000013 |
N | 253 | E253X | Gag | Tag | 3 | 3 | AY.43 | 0.000013 |
N | 253 | E253E | gaG | gaA | 3 | 3 | AY.47 | 0.000093 |
N | 253 | E253D | gaG | gaT | 3 | 3 | AY.98 | 0.000237 |
N | 253 | E253V | gAg | gTg | 3 | 3 | B.1.1 | 0.000054 |
N | 253 | E253E | gaG | gaA | 3 | 3 | B.1.1.316 | 0.002775 |
N | 253 | E253E | gaG | gaA | 3 | 3 | B.1.177 | 0.00004 |
N | 253 | E253G | gAg | gGg | 3 | 3 | B.1.177.19 | 0.004292 |
N | 253 | E253E | gaG | gaA | 3 | 3 | B.1.427 | 0.000151 |
N | 253 | E253D | gaG | gaT | 3 | 3 | B.1.427 | 0.000151 |
N | 253 | E253V | gAg | gTg | 3 | 3 | B.1.517 | 0.001281 |
N | 253 | E253D | gaG | gaT | 3 | 3 | B.1.517 | 0.001281 |
N | 253 | E253V | gAg | gTg | 3 | 3 | B.1.617.2 | 0.000011 |
N | 253 | E253V | gAg | gTg | 3 | 3 | P.1 | 0.000047 |
N | 253 | E253K | Gag | Aag | 3 | 3 | P.1.6 | 0.005837 |
N | 253 | E253R | GAg | AGg | 2 | 2 | 0.111111 | |
N | 253 | E253del2 | GAg | --g | 2 | 2 | All | 0 |
N | 253 | E253R | GAg | AGg | 2 | 2 | All | 0 |
N | 253 | E253E | gaG | gaA | 2 | 2 | AY.102 | 0.000053 |
N | 253 | E253G | gAg | gGg | 2 | 2 | AY.103 | 0.000012 |
N | 253 | E253D | gaG | gaT | 2 | 2 | AY.119 | 0.000071 |
N | 253 | E253D | gaG | gaT | 2 | 2 | AY.16 | 0.000759 |
N | 253 | E253X | Gag | Tag | 2 | 2 | AY.16 | 0.000759 |
N | 253 | E253V | gAg | gTg | 2 | 2 | AY.23 | 0.000139 |
N | 253 | E253G | gAg | gGg | 2 | 2 | AY.25 | 0.000012 |
N | 253 | E253A | gAg | gCg | 2 | 2 | AY.26 | 0.000057 |
N | 253 | E253E | gaG | gaA | 2 | 2 | AY.29.1 | 0.000441 |
N | 253 | E253X | Gag | Tag | 2 | 2 | AY.3 | 0.00002 |
N | 253 | E253D | gaG | gaT | 2 | 2 | AY.34.1 | 0.00102 |
N | 253 | E253E | gaG | gaA | 2 | 2 | AY.4.2 | 0.000043 |
N | 253 | E253A | gAg | gCg | 2 | 2 | AY.4.2 | 0.000043 |
N | 253 | E253E | gaG | gaA | 2 | 2 | AY.42 | 0.00008 |
N | 253 | E253K | Gag | Aag | 2 | 2 | AY.43 | 0.000009 |
N | 253 | E253A | gAg | gCg | 2 | 2 | AY.44 | 0.000012 |
N | 253 | E253del | GAG | --- | 2 | 2 | AY.44 | 0.000012 |
N | 253 | E253V | gAg | gTg | 2 | 2 | AY.44 | 0.000012 |
N | 253 | E253E | gaG | gaA | 2 | 2 | AY.46 | 0.000208 |
N | 253 | E253del | GAG | --- | 2 | 2 | AY.47 | 0.000062 |
N | 253 | E253E | gaG | gaA | 2 | 2 | AY.6 | 0.000082 |
N | 253 | E253D | gaG | gaT | 2 | 2 | AY.61 | 0.00021 |
N | 253 | E253D | gaG | gaT | 2 | 2 | AY.68 | 0.000547 |
N | 253 | E253G | gAg | gGg | 2 | 2 | AY.69 | 0.000373 |
N | 253 | E253E | gaG | gaA | 2 | 2 | AY.70 | 0.000417 |
N | 253 | E253del | GAG | --- | 2 | 2 | AY.75 | 0.000112 |
N | 253 | E253D | gaG | gaT | 2 | 2 | AY.9.2 | 0.000073 |
N | 253 | E253E | gaG | gaA | 2 | 2 | AY.98.1 | 0.000097 |
N | 253 | E253D | gaG | gaT | 2 | 2 | B | 0.000256 |
N | 253 | E253X | Gag | Tag | 2 | 2 | B | 0.000256 |
N | 253 | E253A | gAg | gCg | 2 | 2 | B.1 | 0.000018 |
N | 253 | E253G | gAg | gGg | 2 | 2 | B.1 | 0.000018 |
N | 253 | E253K | Gag | Aag | 2 | 2 | B.1.1 | 0.000036 |
N | 253 | E253G | gAg | gGg | 2 | 2 | B.1.1.214 | 0.000111 |
N | 253 | E253E | gaG | gaA | 2 | 2 | B.1.1.216 | 0.001781 |
N | 253 | E253A | gAg | gCg | 2 | 2 | B.1.1.26 | 0.010471 |
N | 253 | E253G | gAg | gGg | 2 | 2 | B.1.1.28 | 0.000622 |
N | 253 | E253del1 | gaG | ga- | 2 | 2 | B.1.1.306 | 0.000877 |
N | 253 | E253D | gaG | gaT | 1 | 2 | B.1.1.37 | 0.000193 |
N | 253 | E253D | gaG | gaC | 1 | 2 | B.1.1.37 | 0.000193 |
N | 253 | E253D | gaG | gaT | 2 | 2 | B.1.1.372 | 0.001377 |
N | 253 | E253del | GAG | --- | 2 | 2 | B.1.1.519 | 0.000079 |
N | 253 | E253del1 | gaG | ga- | 2 | 2 | B.1.1.7 | 0.000002 |
N | 253 | E253D | gaG | gaT | 2 | 2 | B.1.110 | 0.00905 |
N | 253 | E253G | gAg | gGg | 2 | 2 | B.1.160 | 0.000062 |
N | 253 | E253E | gaG | gaA | 2 | 2 | B.1.160 | 0.000062 |
N | 253 | E253E | gaG | gaA | 2 | 2 | B.1.160.14 | 0.004237 |
N | 253 | E253K | Gag | Aag | 2 | 2 | B.1.177 | 0.000026 |
N | 253 | E253A | gAg | gCg | 2 | 2 | B.1.177 | 0.000026 |
N | 253 | E253D | gaG | gaT | 2 | 2 | B.1.177.4 | 0.000422 |
N | 253 | E253A | gAg | gCg | 2 | 2 | B.1.2 | 0.000018 |
N | 253 | E253V | gAg | gTg | 2 | 2 | B.1.2 | 0.000018 |
N | 253 | E253G | gAg | gGg | 2 | 2 | B.1.2 | 0.000018 |
N | 253 | E253D | gaG | gaT | 2 | 2 | B.1.221.1 | 0.005814 |
N | 253 | E253K | Gag | Aag | 2 | 2 | B.1.234 | 0.000264 |
N | 253 | E253A | gAg | gCg | 2 | 2 | B.1.258 | 0.000133 |
N | 253 | E253X | Gag | Tag | 2 | 2 | B.1.351 | 0.000059 |
N | 253 | E253del1 | gaG | ga- | 2 | 2 | B.1.36 | 0.000292 |
N | 253 | E253D | gaG | gaT | 2 | 2 | B.1.400 | 0.000858 |
N | 253 | E253X | Gag | Tag | 2 | 2 | B.1.429 | 0.000047 |
N | 253 | E253K | Gag | Aag | 2 | 2 | B.1.450 | 0.022727 |
N | 253 | E253D | gaG | gaT | 2 | 2 | B.1.596 | 0.000174 |
N | 253 | E253X | Gag | Tag | 2 | 2 | B.1.617.1 | 0.000258 |
N | 253 | E253X | Gag | Tag | 2 | 2 | B.1.617.2 | 0.000008 |
N | 253 | E253D | gaG | gaT | 2 | 2 | D.2 | 0.00015 |
N | 253 | E253E | gaG | gaA | 2 | 2 | P.1.15 | 0.000465 |
N | 253 | E253X | Gag | Tag | 2 | 2 | P.2 | 0.000373 |
N | 253 | E253X | Gag | Tag | 1 | 1 | A | 0.000387 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | A.1 | 0.000282 |
N | 253 | E253D | gaG | gaT | 1 | 1 | A.1 | 0.000282 |
N | 253 | E253X | Gag | Tag | 1 | 1 | A.2.2 | 0.001689 |
N | 253 | E253K | Gag | Aag | 1 | 1 | A.2.2 | 0.001689 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | A.2.2 | 0.001689 |
N | 253 | E253D | gaG | gaT | 1 | 1 | A.2.5 | 0.000499 |
N | 253 | E253N | GaG | AaC | 1 | 1 | All | 0 |
N | 253 | E253M | GAg | ATg | 1 | 1 | All | 0 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AT.1 | 0.005128 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.1 | 0.000396 |
N | 253 | E253D | gaG | gaC | 1 | 1 | AY.10 | 0.00053 |
N | 253 | E253del | GAG | --- | 1 | 1 | AY.100 | 0.000046 |
N | 253 | E253A | gAg | gCg | 1 | 1 | AY.100 | 0.000046 |
N | 253 | E253del1 | gAg | g-g | 1 | 1 | AY.100 | 0.000046 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | AY.102 | 0.000027 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.102 | 0.000027 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.102 | 0.000027 |
N | 253 | E253del | GAG | --- | 1 | 1 | AY.102 | 0.000027 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.103 | 0.000006 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.103 | 0.000006 |
N | 253 | E253A | gAg | gCg | 1 | 1 | AY.103 | 0.000006 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.108 | 0.001103 |
N | 253 | E253del | GAG | --- | 1 | 1 | AY.108 | 0.001103 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.113 | 0.000142 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.116 | 0.000287 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.116.1 | 0.000311 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | AY.117 | 0.000085 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.117 | 0.000085 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.117 | 0.000085 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.117 | 0.000085 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.119 | 0.000035 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.12 | 0.000316 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.12 | 0.000316 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.12 | 0.000316 |
N | 253 | E253A | gAg | gCg | 1 | 1 | AY.120 | 0.000037 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.120 | 0.000037 |
N | 253 | E253V | gAg | gTg | 1 | 1 | AY.120.2 | 0.001285 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 253 | E253A | gAg | gCg | 1 | 1 | AY.121 | 0.000135 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.121 | 0.000135 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.14 | 0.000088 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.14 | 0.000088 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.16 | 0.00038 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.2 | 0.000356 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | AY.24 | 0.000431 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | AY.27 | 0.000065 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.27 | 0.000065 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.29 | 0.000016 |
N | 253 | E253Y | GaG | TaT | 1 | 1 | AY.3 | 0.00001 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.33 | 0.000067 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.35 | 0.000233 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.35 | 0.000233 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.39 | 0.000025 |
N | 253 | E253V | gAg | gTg | 1 | 1 | AY.39 | 0.000025 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.39.1 | 0.00004 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | AY.4 | 0.000002 |
N | 253 | E253V | gAg | gTg | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.4.5 | 0.000107 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.41 | 0.000294 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.42 | 0.00004 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.42 | 0.00004 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.42 | 0.00004 |
N | 253 | E253V | gAg | gTg | 1 | 1 | AY.43 | 0.000004 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | AY.43 | 0.000004 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.44 | 0.000006 |
N | 253 | E253Y | GaG | TaT | 1 | 1 | AY.44 | 0.000006 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.44 | 0.000006 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.44 | 0.000006 |
N | 253 | E253V | gAg | gTg | 1 | 1 | AY.45 | 0.000122 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.46 | 0.000104 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.46.4 | 0.000165 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.46.5 | 0.000198 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.46.6 | 0.000072 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.46.6 | 0.000072 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.47 | 0.000031 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | AY.5 | 0.000021 |
N | 253 | E253A | gAg | gCg | 1 | 1 | AY.5 | 0.000021 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.5 | 0.000021 |
N | 253 | E253V | gAg | gTg | 1 | 1 | AY.5 | 0.000021 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.53 | 0.000288 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.54 | 0.000095 |
N | 253 | E253del | GAG | --- | 1 | 1 | AY.54 | 0.000095 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.58 | 0.000907 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.59 | 0.00053 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.59 | 0.00053 |
N | 253 | E253A | gAg | gCg | 1 | 1 | AY.6 | 0.000041 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.6 | 0.000041 |
N | 253 | E253G | gAg | gGg | 1 | 1 | AY.61 | 0.000105 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.61 | 0.000105 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.62 | 0.000436 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.64 | 0.000595 |
N | 253 | E253V | gAg | gTg | 1 | 1 | AY.67 | 0.000464 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.68 | 0.000274 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.7 | 0.000196 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.70 | 0.000209 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.71 | 0.000475 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.75 | 0.000056 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.75.1 | 0.00018 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.88 | 0.000884 |
N | 253 | E253K | Gag | Aag | 1 | 1 | AY.88 | 0.000884 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.9 | 0.000068 |
N | 253 | E253del | GAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.90 | 0.000684 |
N | 253 | E253E | gaG | gaA | 1 | 1 | AY.98 | 0.000079 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.98 | 0.000079 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.98.1 | 0.000048 |
N | 253 | E253X | Gag | Tag | 1 | 1 | AY.98.1 | 0.000048 |
N | 253 | E253V | gAg | gTg | 1 | 1 | AY.99.2 | 0.000092 |
N | 253 | E253D | gaG | gaT | 1 | 1 | AY.99.2 | 0.000092 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1 | 0.000009 |
N | 253 | E253N | GaG | AaC | 1 | 1 | B.1 | 0.000009 |
N | 253 | E253K | Gag | Aag | 1 | 1 | B.1 | 0.000009 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | B.1 | 0.000009 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.1 | 0.000018 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.1.1 | 0.000327 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | B.1.1.101 | 0.01 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.121 | 0.002427 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | B.1.1.121 | 0.002427 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.1.139 | 0.022727 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.1.164 | 0.005155 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.1.17 | 0.016667 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | B.1.1.198 | 0.001468 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.1.198 | 0.001468 |
N | 253 | E253K | Gag | Aag | 1 | 1 | B.1.1.214 | 0.000055 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.1.220 | 0.001859 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | B.1.1.25 | 0.000569 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.255 | 0.00303 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.28 | 0.000311 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | B.1.1.294 | 0.001266 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.1.298 | 0.000862 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.3 | 0.008696 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.1.306 | 0.000438 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | B.1.1.311 | 0.000358 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.1.316 | 0.000925 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.1.318 | 0.000302 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.1.326 | 0.001761 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.33 | 0.000421 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.331 | 0.011628 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.337 | 0.003597 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.1.354 | 0.004386 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.1.37 | 0.000193 |
N | 253 | E253del2 | GAg | --g | 1 | 1 | B.1.1.37 | 0.000193 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.1.37 | 0.000193 |
N | 253 | E253del1 | gAg | g-g | 1 | 1 | B.1.1.372 | 0.000689 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.1.374 | 0.002375 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.1.39 | 0.00051 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | B.1.1.41 | 0.006329 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.1.417 | 0.002703 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.46 | 0.004367 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.51 | 0.001718 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.1.519 | 0.00004 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.53 | 0.013699 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.1.63 | 0.000386 |
N | 253 | E253A | gAG | gCT | 1 | 1 | B.1.1.63 | 0.000386 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | B.1.1.7 | 0.000001 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.1.70 | 0.000341 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.13 | 0.002375 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.147 | 0.000756 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.149 | 0.003425 |
N | 253 | E253D | gaG | gaC | 1 | 1 | B.1.157 | 0.002985 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.157 | 0.002985 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.160 | 0.000031 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.160 | 0.000031 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.160.26 | 0.002421 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.160.32 | 0.004292 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.160.7 | 0.002079 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.160.9 | 0.007194 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | B.1.177 | 0.000013 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.177 | 0.000013 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.177.15 | 0.000631 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.177.17 | 0.000821 |
N | 253 | E253D | gaG | gaC | 1 | 1 | B.1.177.21 | 0.000076 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.177.21 | 0.000076 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.177.4 | 0.000211 |
N | 253 | E253K | Gag | Aag | 1 | 1 | B.1.177.42 | 0.000894 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.177.44 | 0.000519 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.177.44 | 0.000519 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.177.44 | 0.000519 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.177.44 | 0.000519 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.177.51 | 0.004566 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.177.51 | 0.004566 |
N | 253 | E253Y | GaG | TaT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.177.57 | 0.000281 |
N | 253 | E253M | GAg | ATg | 1 | 1 | B.1.177.63 | 0.002703 |
N | 253 | E253D | gaG | gaC | 1 | 1 | B.1.177.73 | 0.000566 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.177.87 | 0.000728 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.221 | 0.000071 |
N | 253 | E253K | Gag | Aag | 1 | 1 | B.1.221 | 0.000071 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.221 | 0.000071 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.234 | 0.000132 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.234 | 0.000132 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.240 | 0.000216 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.240 | 0.000216 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | B.1.247 | 0.014925 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.258.14 | 0.00098 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.258.17 | 0.000104 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.258.17 | 0.000104 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.258.5 | 0.008772 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.260 | 0.003344 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.279 | 0.000514 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.301 | 0.005917 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.301 | 0.005917 |
N | 253 | E253Y | GaG | TaT | 1 | 1 | B.1.301 | 0.005917 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.311 | 0.000275 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.320 | 0.001245 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.325 | 0.006897 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.338 | 0.008621 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.338 | 0.008621 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.351 | 0.00003 |
N | 253 | E253K | Gag | Aag | 1 | 1 | B.1.351 | 0.00003 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.351 | 0.00003 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.351.3 | 0.000876 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.351.3 | 0.000876 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.36 | 0.000146 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.36 | 0.000146 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.36 | 0.000146 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.36.1 | 0.00114 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.36.17 | 0.000494 |
N | 253 | E253V | gAg | gTg | 1 | 1 | B.1.36.17 | 0.000494 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.36.18 | 0.00042 |
N | 253 | E253K | Gag | Aag | 1 | 1 | B.1.36.18 | 0.00042 |
N | 253 | E253del2 | GAg | --g | 1 | 1 | B.1.36.29 | 0.000517 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | B.1.36.29 | 0.000517 |
N | 253 | E253Y | GaG | TaT | 1 | 1 | B.1.36.29 | 0.000517 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.36.29 | 0.000517 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.36.8 | 0.001 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.362.2 | 0.004717 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.369 | 0.000285 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.369 | 0.000285 |
N | 253 | E253D | gaG | gaC | 1 | 1 | B.1.379 | 0.017241 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.383 | 0.009009 |
N | 253 | E253V | gAg | gTg | 1 | 1 | B.1.385 | 0.010638 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.391 | 0.001127 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.399 | 0.001934 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.399 | 0.001934 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.427 | 0.00005 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.429 | 0.000024 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | B.1.429 | 0.000024 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.439 | 0.005917 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.453 | 0.003236 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.453 | 0.003236 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.462 | 0.007246 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.466.2 | 0.000391 |
N | 253 | E253del1 | Gag | -ag | 1 | 1 | B.1.468 | 0.005714 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.499 | 0.00105 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.503 | 0.002488 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.521 | 0.004975 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.525 | 0.000113 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.526 | 0.000024 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.565 | 0.00081 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.580 | 0.004065 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.588 | 0.00091 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.595 | 0.000261 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.595 | 0.000261 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.597 | 0.00463 |
N | 253 | E253del1 | gAg | g-g | 1 | 1 | B.1.617.1 | 0.000129 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | B.1.617.1 | 0.000129 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 253 | E253A | gAg | gCg | 1 | 1 | B.1.617.2 | 0.000004 |
N | 253 | E253K | Gag | Aag | 1 | 1 | B.1.617.2 | 0.000004 |
N | 253 | E253del1 | gaG | ga- | 1 | 1 | B.1.617.3 | 0.002985 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.620 | 0.000946 |
N | 253 | E253del | GAG | --- | 1 | 1 | B.1.621 | 0.000089 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.1.621 | 0.000089 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.623 | 0.000536 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.1.629 | 0.013333 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.1.8 | 0.001972 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.1.93 | 0.000934 |
N | 253 | E253X | Gag | Tag | 1 | 1 | B.29 | 0.003509 |
N | 253 | E253D | gaG | gaT | 1 | 1 | B.3.1 | 0.001658 |
N | 253 | E253D | gaG | gaC | 1 | 1 | B.4 | 0.002208 |
N | 253 | E253G | gAg | gGg | 1 | 1 | B.40 | 0.000364 |
N | 253 | E253E | gaG | gaA | 1 | 1 | B.55 | 0.00295 |
N | 253 | E253E | gaG | gaA | 1 | 1 | C.16 | 0.00106 |
N | 253 | E253E | gaG | gaA | 1 | 1 | C.37 | 0.000116 |
N | 253 | E253D | gaG | gaT | 1 | 1 | C.4 | 0.01 |
N | 253 | E253E | gaG | gaA | 1 | 1 | D.2 | 0.000075 |
N | 253 | E253V | gAg | gTg | 1 | 1 | D.2 | 0.000075 |
N | 253 | E253G | gAg | gGg | 1 | 1 | P.1 | 0.000016 |
N | 253 | E253Q | Gag | Cag | 1 | 1 | P.1 | 0.000016 |
N | 253 | E253D | gaG | gaT | 1 | 1 | P.1.12 | 0.000484 |
N | 253 | E253D | gaG | gaT | 1 | 1 | P.1.15 | 0.000232 |
N | 253 | E253del | GAG | --- | 1 | 1 | Q.2 | 0.000613 |
N | 253 | E253D | gaG | gaT | 1 | 1 | Q.3 | 0.000145 |
N | 253 | E253E | gaG | gaA | 1 | 1 | Q.3 | 0.000145 |
N | 253 | E253D | gaG | gaT | 1 | 1 | Q.4 | 0.000455 |
N | 253 | E253E | gaG | gaA | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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