CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 251 | A251A | syn | gcT | gcC | 2859 | 2814 | 0.98426 | 29024-29026 | |
N | 251 | A251A | syn | gcT | gcA | 2859 | 40 | 0.0139909 | 29024-29026 | |
N | 251 | A251A | syn | gcT | gcG | 2859 | 5 | 0.00174886 | 29024-29026 | |
N | 251 | A251S | nonsyn | Gct | Tct | 2613 | 2612 | 0.999617 | 29024-29026 | |
N | 251 | A251S | nonsyn | GcT | TcC | 2613 | 1 | 0.000382702 | 29024-29026 | |
N | 251 | A251V | nonsyn | gCt | gTt | 2609 | 2606 | 0.99885 | 29024-29026 | |
N | 251 | A251V | nonsyn | gCT | gTC | 2609 | 2 | 0.000766577 | 29024-29026 | |
N | 251 | A251V | nonsyn | gCT | gTA | 2609 | 1 | 0.000383289 | 29024-29026 | |
N | 251 | A251del | del | GCT | --- | 90 | 90 | 1 | 29024-29026 | |
N | 251 | A251T | nonsyn | Gct | Act | 68 | 64 | 0.941176 | 29024-29026 | |
N | 251 | A251T | nonsyn | GcT | AcA | 68 | 2 | 0.0294118 | 29024-29026 | |
N | 251 | A251T | nonsyn | GcT | AcG | 68 | 1 | 0.0147059 | 29024-29026 | |
N | 251 | A251T | nonsyn | GcT | AcC | 68 | 1 | 0.0147059 | 29024-29026 | |
N | 251 | A251D | nonsyn | gCt | gAt | 38 | 38 | 1 | 29024-29026 | |
N | 251 | A251G | nonsyn | gCt | gGt | 16 | 15 | 0.9375 | 29024-29026 | |
N | 251 | A251G | nonsyn | gCT | gGA | 16 | 1 | 0.0625 | 29024-29026 | |
N | 251 | A251del1 | del | Gct | -ct | 11 | 6 | 0.545455 | 29024-29026 | |
N | 251 | A251del1 | del | gcT | gc- | 11 | 2 | 0.181818 | 29024-29026 | |
N | 251 | A251del1 | del | GCT | -TC | 11 | 1 | 0.0909091 | 29024-29026 | |
N | 251 | A251del1 | del | gCT | g-A | 11 | 1 | 0.0909091 | 29024-29026 | |
N | 251 | A251del1 | del | GcT | -cC | 11 | 1 | 0.0909091 | 29024-29026 | |
N | 251 | A251P | nonsyn | Gct | Cct | 8 | 5 | 0.625 | 29024-29026 | |
N | 251 | A251P | nonsyn | GcT | CcC | 8 | 2 | 0.25 | 29024-29026 | |
N | 251 | A251P | nonsyn | GcT | CcA | 8 | 1 | 0.125 | 29024-29026 | |
N | 251 | A251L | nonsyn | GCt | CTt | 4 | 2 | 0.5 | 29024-29026 | |
N | 251 | A251L | nonsyn | GCT | CTA | 4 | 1 | 0.25 | 29024-29026 | |
N | 251 | A251L | nonsyn | GCT | CTC | 4 | 1 | 0.25 | 29024-29026 | |
N | 251 | A251I | nonsyn | GCt | ATt | 3 | 1 | 0.333333 | 29024-29026 | |
N | 251 | A251I | nonsyn | GCT | ATC | 3 | 1 | 0.333333 | 29024-29026 | |
N | 251 | A251I | nonsyn | GCT | ATA | 3 | 1 | 0.333333 | 29024-29026 | |
N | 251 | A251del2 | del | GCt | --t | 2 | 2 | 1 | 29024-29026 | |
N | 251 | A251N | nonsyn | GCt | AAt | 2 | 2 | 1 | 29024-29026 | |
N | 251 | A251H | nonsyn | GCT | CAC | 1 | 1 | 1 | 29024-29026 | |
N | 251 | A251R | nonsyn | GCT | AGA | 1 | 1 | 1 | 29024-29026 | |
N | 251 | A251E | nonsyn | gCT | gAA | 1 | 1 | 1 | 29024-29026 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 251 | A251A | gcT | gcC | 2814 | 2859 | All | 0.000538 |
N | 251 | A251A | gcT | gcA | 40 | 2859 | All | 0.000008 |
N | 251 | A251A | gcT | gcG | 5 | 2859 | All | 0.000001 |
N | 251 | A251S | Gct | Tct | 2612 | 2613 | All | 0.0005 |
N | 251 | A251S | GcT | TcC | 1 | 2613 | All | 0 |
N | 251 | A251V | gCt | gTt | 2606 | 2609 | All | 0.000498 |
N | 251 | A251V | gCT | gTC | 2 | 2609 | All | 0 |
N | 251 | A251V | gCT | gTA | 1 | 2609 | All | 0 |
N | 251 | A251A | gcT | gcC | 1620 | 1621 | AY.4 | 0.002521 |
N | 251 | A251A | gcT | gcG | 1 | 1621 | AY.4 | 0.000002 |
N | 251 | A251S | Gct | Tct | 1295 | 1296 | AY.4 | 0.002016 |
N | 251 | A251S | GcT | TcC | 1 | 1296 | AY.4 | 0.000002 |
N | 251 | A251A | gcT | gcC | 472 | 472 | AY.27 | 0.030548 |
N | 251 | A251V | gCt | gTt | 390 | 390 | AY.4 | 0.000607 |
N | 251 | A251V | gCt | gTt | 361 | 361 | B.1.1.7 | 0.000323 |
N | 251 | A251V | gCt | gTt | 292 | 292 | B.1.617.2 | 0.0011 |
N | 251 | A251A | gcT | gcC | 243 | 243 | AY.103 | 0.001509 |
N | 251 | A251S | Gct | Tct | 202 | 202 | AY.43 | 0.000895 |
N | 251 | A251S | Gct | Tct | 172 | 172 | B.1.1.7 | 0.000154 |
N | 251 | A251V | gCt | gTt | 168 | 168 | AY.44 | 0.001023 |
N | 251 | A251S | Gct | Tct | 139 | 139 | B.1.617.2 | 0.000523 |
N | 251 | A251V | gCt | gTt | 106 | 106 | AY.3 | 0.001054 |
N | 251 | A251V | gCt | gTt | 96 | 96 | B.1 | 0.000879 |
N | 251 | A251V | gCt | gTt | 95 | 95 | AY.103 | 0.00059 |
N | 251 | A251del | GCT | --- | 90 | 90 | All | 0.000017 |
N | 251 | A251V | gCt | gTt | 86 | 86 | AY.25 | 0.000517 |
N | 251 | A251S | Gct | Tct | 75 | 75 | B.1.2 | 0.00066 |
N | 251 | A251A | gcT | gcC | 69 | 69 | AY.92 | 0.019822 |
N | 251 | A251T | Gct | Act | 64 | 68 | All | 0.000012 |
N | 251 | A251T | GcT | AcA | 2 | 68 | All | 0 |
N | 251 | A251T | GcT | AcC | 1 | 68 | All | 0 |
N | 251 | A251T | GcT | AcG | 1 | 68 | All | 0 |
N | 251 | A251V | gCt | gTt | 65 | 65 | AY.43 | 0.000288 |
N | 251 | A251S | Gct | Tct | 63 | 63 | AY.103 | 0.000391 |
N | 251 | A251A | gcT | gcC | 57 | 63 | B.1.1.7 | 0.000051 |
N | 251 | A251A | gcT | gcA | 5 | 63 | B.1.1.7 | 0.000004 |
N | 251 | A251A | gcT | gcG | 1 | 63 | B.1.1.7 | 0.000001 |
N | 251 | A251S | Gct | Tct | 61 | 61 | AY.5 | 0.00126 |
N | 251 | A251V | gCt | gTt | 59 | 59 | AY.102 | 0.001564 |
N | 251 | A251S | Gct | Tct | 59 | 59 | AY.25 | 0.000355 |
N | 251 | A251A | gcT | gcC | 54 | 57 | B.1.617.2 | 0.000203 |
N | 251 | A251A | gcT | gcA | 3 | 57 | B.1.617.2 | 0.000011 |
N | 251 | A251S | Gct | Tct | 55 | 55 | AY.44 | 0.000335 |
N | 251 | A251V | gCt | gTt | 52 | 52 | AY.100 | 0.002392 |
N | 251 | A251V | gCt | gTt | 43 | 43 | B.1.2 | 0.000379 |
N | 251 | A251D | gCt | gAt | 38 | 38 | All | 0.000007 |
N | 251 | A251A | gcT | gcC | 30 | 34 | B.1.2 | 0.000264 |
N | 251 | A251A | gcT | gcA | 3 | 34 | B.1.2 | 0.000026 |
N | 251 | A251A | gcT | gcG | 1 | 34 | B.1.2 | 0.000009 |
N | 251 | A251T | Gct | Act | 33 | 33 | AY.4 | 0.000051 |
N | 251 | A251S | Gct | Tct | 32 | 32 | AY.102 | 0.000848 |
N | 251 | A251V | gCt | gTt | 32 | 32 | B.1.279 | 0.016436 |
N | 251 | A251A | gcT | gcC | 18 | 30 | AY.43 | 0.00008 |
N | 251 | A251A | gcT | gcA | 12 | 30 | AY.43 | 0.000053 |
N | 251 | A251D | gCt | gAt | 30 | 30 | B.1.1.7 | 0.000027 |
N | 251 | A251del | GCT | --- | 30 | 30 | B.1.1.7 | 0.000027 |
N | 251 | A251S | Gct | Tct | 29 | 29 | B.1.1 | 0.000526 |
N | 251 | A251S | Gct | Tct | 26 | 26 | AY.39 | 0.000642 |
N | 251 | A251S | Gct | Tct | 25 | 25 | B.1.177 | 0.000329 |
N | 251 | A251V | gCt | gTt | 24 | 24 | P.1 | 0.000378 |
N | 251 | A251V | gCt | gTt | 23 | 23 | AY.36 | 0.003409 |
N | 251 | A251A | gcT | gcC | 23 | 23 | P.1 | 0.000362 |
N | 251 | A251S | Gct | Tct | 22 | 22 | AY.3 | 0.000219 |
N | 251 | A251V | gCt | gTt | 20 | 22 | B.1.1 | 0.000363 |
N | 251 | A251V | gCT | gTA | 1 | 22 | B.1.1 | 0.000018 |
N | 251 | A251V | gCT | gTC | 1 | 22 | B.1.1 | 0.000018 |
N | 251 | A251A | gcT | gcC | 21 | 21 | A.23.1 | 0.014789 |
N | 251 | A251S | Gct | Tct | 21 | 21 | AY.120 | 0.000781 |
N | 251 | A251S | Gct | Tct | 21 | 21 | B.1 | 0.000192 |
N | 251 | A251A | gcT | gcC | 20 | 20 | AY.3 | 0.000199 |
N | 251 | A251V | gCt | gTt | 18 | 18 | AY.29 | 0.000284 |
N | 251 | A251V | gCt | gTt | 18 | 18 | AY.94 | 0.007968 |
N | 251 | A251V | gCt | gTt | 18 | 18 | B.1.1.172 | 0.327273 |
N | 251 | A251V | gCt | gTt | 18 | 18 | B.1.425 | 0.053892 |
N | 251 | A251V | gCt | gTt | 17 | 17 | AY.39 | 0.00042 |
N | 251 | A251V | gCt | gTt | 17 | 17 | AY.5 | 0.000351 |
N | 251 | A251G | gCt | gGt | 15 | 16 | All | 0.000003 |
N | 251 | A251G | gCT | gGA | 1 | 16 | All | 0 |
N | 251 | A251V | gCt | gTt | 15 | 15 | AY.47 | 0.000467 |
N | 251 | A251V | gCt | gTt | 15 | 15 | AY.75 | 0.00084 |
N | 251 | A251S | Gct | Tct | 14 | 14 | AY.26 | 0.000396 |
N | 251 | A251V | gCt | gTt | 14 | 14 | AY.33 | 0.000935 |
N | 251 | A251A | gcT | gcC | 14 | 14 | AY.39 | 0.000346 |
N | 251 | A251V | gCt | gTt | 14 | 14 | AY.70 | 0.002919 |
N | 251 | A251V | gCt | gTt | 14 | 14 | B.1.128 | 0.008895 |
N | 251 | A251A | gcT | gcC | 14 | 14 | B.1.243 | 0.000974 |
N | 251 | A251V | gCt | gTt | 12 | 12 | AY.4.5 | 0.00129 |
N | 251 | A251S | Gct | Tct | 12 | 12 | AY.5.4 | 0.00332 |
N | 251 | A251V | gCt | gTt | 12 | 12 | B.1.1.214 | 0.000665 |
N | 251 | A251S | Gct | Tct | 12 | 12 | B.1.429 | 0.000282 |
N | 251 | A251del1 | Gct | -ct | 6 | 11 | All | 0.000001 |
N | 251 | A251del1 | gcT | gc- | 2 | 11 | All | 0 |
N | 251 | A251del1 | GcT | -cC | 1 | 11 | All | 0 |
N | 251 | A251del1 | GCT | -TC | 1 | 11 | All | 0 |
N | 251 | A251del1 | gCT | g-A | 1 | 11 | All | 0 |
N | 251 | A251V | gCt | gTt | 11 | 11 | AY.117 | 0.00093 |
N | 251 | A251V | gCt | gTt | 11 | 11 | AY.20 | 0.000428 |
N | 251 | A251V | gCt | gTt | 11 | 11 | AY.4.2 | 0.000239 |
N | 251 | A251A | gcT | gcC | 11 | 11 | AY.45 | 0.001339 |
N | 251 | A251S | Gct | Tct | 11 | 11 | AY.6 | 0.000452 |
N | 251 | A251V | gCt | gTt | 11 | 11 | AY.9.1 | 0.000921 |
N | 251 | A251V | gCt | gTt | 10 | 10 | AY.119 | 0.000353 |
N | 251 | A251V | gCt | gTt | 10 | 10 | AY.26 | 0.000283 |
N | 251 | A251A | gcT | gcC | 8 | 10 | B.1 | 0.000073 |
N | 251 | A251A | gcT | gcA | 2 | 10 | B.1 | 0.000018 |
N | 251 | A251S | Gct | Tct | 10 | 10 | B.1.1.186 | 0.034364 |
N | 251 | A251V | gCt | gTt | 9 | 9 | AY.116 | 0.002581 |
N | 251 | A251V | gCt | gTt | 9 | 9 | AY.118 | 0.000564 |
N | 251 | A251A | gcT | gcC | 9 | 9 | AY.25 | 0.000054 |
N | 251 | A251V | gCt | gTt | 9 | 9 | AY.39.1 | 0.000357 |
N | 251 | A251V | gCt | gTt | 9 | 9 | B.1.1.364 | 0.6 |
N | 251 | A251V | gCt | gTt | 9 | 9 | B.1.526 | 0.000212 |
N | 251 | A251P | Gct | Cct | 5 | 8 | All | 0.000001 |
N | 251 | A251P | GcT | CcC | 2 | 8 | All | 0 |
N | 251 | A251P | GcT | CcA | 1 | 8 | All | 0 |
N | 251 | A251S | Gct | Tct | 8 | 8 | AY.29 | 0.000126 |
N | 251 | A251A | gcT | gcC | 8 | 8 | AY.33 | 0.000534 |
N | 251 | A251del | GCT | --- | 8 | 8 | AY.4 | 0.000012 |
N | 251 | A251V | gCt | gTt | 8 | 8 | AY.42 | 0.000322 |
N | 251 | A251S | Gct | Tct | 8 | 8 | AY.45 | 0.000973 |
N | 251 | A251V | gCt | gTt | 8 | 8 | AY.57 | 0.005249 |
N | 251 | A251A | gcT | gcC | 8 | 8 | AY.75.1 | 0.001442 |
N | 251 | A251V | gCt | gTt | 8 | 8 | AY.9.2 | 0.000294 |
N | 251 | A251V | gCt | gTt | 8 | 8 | AY.91 | 0.005844 |
N | 251 | A251V | gCt | gTt | 8 | 8 | AY.98.1 | 0.000387 |
N | 251 | A251V | gCt | gTt | 8 | 8 | AY.99.2 | 0.000737 |
N | 251 | A251V | gCt | gTt | 8 | 8 | B.1.160 | 0.00025 |
N | 251 | A251A | gcT | gcC | 8 | 8 | B.1.177 | 0.000105 |
N | 251 | A251V | gCt | gTt | 8 | 8 | B.1.177 | 0.000105 |
N | 251 | A251V | gCt | gTt | 8 | 8 | B.1.177.86 | 0.001468 |
N | 251 | A251V | gCt | gTt | 8 | 8 | B.1.258 | 0.000532 |
N | 251 | A251S | Gct | Tct | 8 | 8 | B.1.621 | 0.000708 |
N | 251 | A251S | Gct | Tct | 8 | 8 | P.1 | 0.000126 |
N | 251 | A251V | gCt | gTt | 7 | 7 | AY.14 | 0.000616 |
N | 251 | A251V | gCt | gTt | 7 | 7 | AY.23 | 0.000488 |
N | 251 | A251S | Gct | Tct | 7 | 7 | AY.33 | 0.000467 |
N | 251 | A251V | gCt | gTt | 7 | 7 | AY.45 | 0.000852 |
N | 251 | A251S | Gct | Tct | 7 | 7 | AY.98.1 | 0.000339 |
N | 251 | A251V | gCt | gTt | 7 | 7 | B.1.1.318 | 0.002112 |
N | 251 | A251A | gcT | gcC | 7 | 7 | B.1.234 | 0.000924 |
N | 251 | A251V | gCt | gTt | 7 | 7 | B.1.429 | 0.000165 |
N | 251 | A251S | Gct | Tct | 7 | 7 | B.1.452 | 0.09589 |
N | 251 | A251del | GCT | --- | 6 | 6 | AY.25 | 0.000036 |
N | 251 | A251V | gCt | gTt | 6 | 6 | AY.46.1 | 0.00616 |
N | 251 | A251V | gCt | gTt | 6 | 6 | AY.46.4 | 0.000987 |
N | 251 | A251S | Gct | Tct | 6 | 6 | AY.46.6 | 0.000433 |
N | 251 | A251V | gCt | gTt | 6 | 6 | AY.61 | 0.000629 |
N | 251 | A251V | gCt | gTt | 6 | 6 | AY.69 | 0.00112 |
N | 251 | A251A | gcT | gcC | 4 | 6 | B.1.1 | 0.000073 |
N | 251 | A251A | gcT | gcA | 2 | 6 | B.1.1 | 0.000036 |
N | 251 | A251del1 | Gct | -ct | 3 | 6 | B.1.1.7 | 0.000003 |
N | 251 | A251del1 | GCT | -TC | 1 | 6 | B.1.1.7 | 0.000001 |
N | 251 | A251del1 | gcT | gc- | 1 | 6 | B.1.1.7 | 0.000001 |
N | 251 | A251del1 | gCT | g-A | 1 | 6 | B.1.1.7 | 0.000001 |
N | 251 | A251S | Gct | Tct | 6 | 6 | B.1.160 | 0.000187 |
N | 251 | A251V | gCt | gTt | 6 | 6 | B.1.243 | 0.000418 |
N | 251 | A251S | Gct | Tct | 5 | 5 | AY.20 | 0.000194 |
N | 251 | A251T | Gct | Act | 5 | 5 | AY.3 | 0.00005 |
N | 251 | A251S | Gct | Tct | 5 | 5 | AY.36 | 0.000741 |
N | 251 | A251S | Gct | Tct | 5 | 5 | AY.42 | 0.000201 |
N | 251 | A251A | gcT | gcC | 5 | 5 | AY.44 | 0.00003 |
N | 251 | A251V | gCt | gTt | 5 | 5 | AY.85 | 0.002136 |
N | 251 | A251V | gCt | gTt | 5 | 5 | AY.98 | 0.000395 |
N | 251 | A251T | Gct | Act | 3 | 5 | B.1.1 | 0.000054 |
N | 251 | A251T | GcT | AcA | 1 | 5 | B.1.1 | 0.000018 |
N | 251 | A251T | GcT | AcC | 1 | 5 | B.1.1 | 0.000018 |
N | 251 | A251T | Gct | Act | 5 | 5 | B.1.1.7 | 0.000004 |
N | 251 | A251V | gCt | gTt | 5 | 5 | B.1.177.58 | 0.006658 |
N | 251 | A251V | gCt | gTt | 5 | 5 | B.1.221 | 0.000355 |
N | 251 | A251V | gCt | gTt | 5 | 5 | B.1.427 | 0.000252 |
N | 251 | A251A | gcT | gcC | 5 | 5 | B.1.588 | 0.00455 |
N | 251 | A251V | gCt | gTt | 5 | 5 | C.37 | 0.00058 |
N | 251 | A251S | Gct | Tct | 5 | 5 | Q.3 | 0.000725 |
N | 251 | A251L | GCt | CTt | 2 | 4 | All | 0 |
N | 251 | A251L | GCT | CTA | 1 | 4 | All | 0 |
N | 251 | A251L | GCT | CTC | 1 | 4 | All | 0 |
N | 251 | A251S | Gct | Tct | 4 | 4 | AY.113 | 0.00057 |
N | 251 | A251V | gCt | gTt | 4 | 4 | AY.120 | 0.000149 |
N | 251 | A251A | gcT | gcA | 4 | 4 | AY.14 | 0.000352 |
N | 251 | A251A | gcT | gcC | 4 | 4 | AY.26 | 0.000113 |
N | 251 | A251V | gCt | gTt | 4 | 4 | AY.27 | 0.000259 |
N | 251 | A251S | Gct | Tct | 4 | 4 | AY.4.2 | 0.000087 |
N | 251 | A251del | GCT | --- | 4 | 4 | AY.43 | 0.000018 |
N | 251 | A251V | gCt | gTt | 4 | 4 | AY.46 | 0.000416 |
N | 251 | A251S | Gct | Tct | 4 | 4 | AY.61 | 0.000419 |
N | 251 | A251S | Gct | Tct | 4 | 4 | AY.89 | 0.019608 |
N | 251 | A251S | Gct | Tct | 4 | 4 | B.1.1.28 | 0.001245 |
N | 251 | A251S | Gct | Tct | 4 | 4 | B.1.1.432 | 0.005063 |
N | 251 | A251V | gCt | gTt | 4 | 4 | B.1.1.437 | 0.041667 |
N | 251 | A251G | gCt | gGt | 4 | 4 | B.1.1.7 | 0.000004 |
N | 251 | A251V | gCt | gTt | 4 | 4 | B.1.110.3 | 0.002874 |
N | 251 | A251V | gCt | gTt | 4 | 4 | B.1.160.26 | 0.009685 |
N | 251 | A251S | Gct | Tct | 4 | 4 | B.1.526 | 0.000094 |
N | 251 | A251V | gCt | gTt | 4 | 4 | B.1.568 | 0.004444 |
N | 251 | A251V | gCt | gTt | 4 | 4 | P.2 | 0.000747 |
N | 251 | A251S | Gct | Tct | 4 | 4 | P.2 | 0.000747 |
N | 251 | A251V | gCt | gTt | 4 | 4 | Q.8 | 0.00066 |
N | 251 | A251I | GCt | ATt | 1 | 3 | All | 0 |
N | 251 | A251I | GCT | ATC | 1 | 3 | All | 0 |
N | 251 | A251I | GCT | ATA | 1 | 3 | All | 0 |
N | 251 | A251del | GCT | --- | 3 | 3 | AY.103 | 0.000019 |
N | 251 | A251V | gCt | gTt | 3 | 3 | AY.12 | 0.000948 |
N | 251 | A251V | gCt | gTt | 3 | 3 | AY.120.1 | 0.000963 |
N | 251 | A251S | Gct | Tct | 3 | 3 | AY.121 | 0.000406 |
N | 251 | A251V | gCt | gTt | 3 | 3 | AY.121 | 0.000406 |
N | 251 | A251S | Gct | Tct | 3 | 3 | AY.13 | 0.000483 |
N | 251 | A251T | Gct | Act | 1 | 3 | AY.44 | 0.000006 |
N | 251 | A251T | GcT | AcA | 1 | 3 | AY.44 | 0.000006 |
N | 251 | A251T | GcT | AcG | 1 | 3 | AY.44 | 0.000006 |
N | 251 | A251V | gCt | gTt | 3 | 3 | AY.5.3 | 0.001012 |
N | 251 | A251V | gCt | gTt | 3 | 3 | AY.6 | 0.000123 |
N | 251 | A251A | gcT | gcC | 3 | 3 | AY.6 | 0.000123 |
N | 251 | A251S | Gct | Tct | 3 | 3 | AY.68 | 0.000821 |
N | 251 | A251A | gcT | gcC | 3 | 3 | AY.71 | 0.001425 |
N | 251 | A251T | Gct | Act | 3 | 3 | AY.74 | 0.000347 |
N | 251 | A251A | gcT | gcC | 3 | 3 | AY.75 | 0.000168 |
N | 251 | A251V | gCt | gTt | 3 | 3 | AY.75.1 | 0.000541 |
N | 251 | A251S | Gct | Tct | 3 | 3 | AY.98 | 0.000237 |
N | 251 | A251S | Gct | Tct | 3 | 3 | AY.99.2 | 0.000276 |
N | 251 | A251P | GcT | CcC | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251L | GCT | CTA | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251P | Gct | Cct | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251I | GCT | ATC | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251L | GCt | CTt | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251I | GCt | ATt | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251P | GcT | CcA | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251L | GCT | CTC | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251I | GCT | ATA | 1 | 3 | B.1.1 | 0.000018 |
N | 251 | A251V | gCt | gTt | 3 | 3 | B.1.1.284 | 0.000322 |
N | 251 | A251S | Gct | Tct | 3 | 3 | B.1.1.362 | 0.016854 |
N | 251 | A251S | Gct | Tct | 3 | 3 | B.1.1.50 | 0.002037 |
N | 251 | A251S | Gct | Tct | 3 | 3 | B.1.1.519 | 0.000119 |
N | 251 | A251S | Gct | Tct | 3 | 3 | B.1.177.73 | 0.001699 |
N | 251 | A251S | Gct | Tct | 3 | 3 | B.1.240 | 0.000647 |
N | 251 | A251S | Gct | Tct | 3 | 3 | B.1.258.17 | 0.000312 |
N | 251 | A251V | gCt | gTt | 3 | 3 | B.1.258.17 | 0.000312 |
N | 251 | A251A | gcT | gcC | 3 | 3 | B.1.351 | 0.000089 |
N | 251 | A251V | gCt | gTt | 3 | 3 | B.1.351 | 0.000089 |
N | 251 | A251V | gCt | gTt | 3 | 3 | B.1.36.22 | 0.003623 |
N | 251 | A251A | gcT | gcC | 3 | 3 | B.1.422 | 0.002437 |
N | 251 | A251V | gCt | gTt | 3 | 3 | B.1.596 | 0.000261 |
N | 251 | A251T | Gct | Act | 3 | 3 | B.1.617.2 | 0.000011 |
N | 251 | A251A | gcT | gcC | 3 | 3 | B.1.637 | 0.000219 |
N | 251 | A251V | gCt | gTt | 3 | 3 | D.2 | 0.000225 |
N | 251 | A251S | Gct | Tct | 3 | 3 | N.6 | 0.021277 |
N | 251 | A251V | gCt | gTt | 2 | 2 | A.2.3 | 0.009479 |
N | 251 | A251del2 | GCt | --t | 2 | 2 | All | 0 |
N | 251 | A251N | GCt | AAt | 2 | 2 | All | 0 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.10 | 0.00106 |
N | 251 | A251A | gcT | gcC | 2 | 2 | AY.102 | 0.000053 |
N | 251 | A251V | gCt | gTt | 2 | 2 | AY.106 | 0.00067 |
N | 251 | A251V | gCt | gTt | 2 | 2 | AY.108 | 0.002205 |
N | 251 | A251del | GCT | --- | 2 | 2 | AY.111 | 0.000366 |
N | 251 | A251V | gCt | gTt | 2 | 2 | AY.114 | 0.000462 |
N | 251 | A251A | gcT | gcC | 2 | 2 | AY.117 | 0.000169 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.118 | 0.000125 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.119 | 0.000071 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.12 | 0.000632 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.14 | 0.000176 |
N | 251 | A251A | gcT | gcC | 2 | 2 | AY.20 | 0.000078 |
N | 251 | A251del2 | GCt | --t | 2 | 2 | AY.25 | 0.000012 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.3.1 | 0.000171 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.34.1 | 0.00102 |
N | 251 | A251V | gCt | gTt | 2 | 2 | AY.38 | 0.000999 |
N | 251 | A251D | gCt | gAt | 2 | 2 | AY.4 | 0.000003 |
N | 251 | A251G | gCt | gGt | 2 | 2 | AY.4 | 0.000003 |
N | 251 | A251V | gCt | gTt | 2 | 2 | AY.4.2.1 | 0.000298 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.4.2.1 | 0.000298 |
N | 251 | A251V | gCt | gTt | 2 | 2 | AY.40 | 0.001929 |
N | 251 | A251del | GCT | --- | 2 | 2 | AY.44 | 0.000012 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.46 | 0.000208 |
N | 251 | A251V | gCt | gTt | 2 | 2 | AY.46.6 | 0.000144 |
N | 251 | A251del | GCT | --- | 2 | 2 | AY.47 | 0.000062 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.47 | 0.000062 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.65 | 0.001066 |
N | 251 | A251V | gCt | gTt | 2 | 2 | AY.67 | 0.000929 |
N | 251 | A251del | GCT | --- | 2 | 2 | AY.75 | 0.000112 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.80 | 0.002257 |
N | 251 | A251A | gcT | gcC | 2 | 2 | AY.9.2 | 0.000073 |
N | 251 | A251S | Gct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
N | 251 | A251A | gcT | gcC | 2 | 2 | AY.98 | 0.000158 |
N | 251 | A251del | GCT | --- | 2 | 2 | B.1.1 | 0.000036 |
N | 251 | A251G | gCt | gGt | 1 | 2 | B.1.1 | 0.000018 |
N | 251 | A251G | gCT | gGA | 1 | 2 | B.1.1 | 0.000018 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.1.128 | 0.014184 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.1.1.216 | 0.001781 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.1.1.222 | 0.000408 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.1.268 | 0.029851 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.1.28 | 0.000622 |
N | 251 | A251A | gcT | gcC | 2 | 2 | B.1.1.306 | 0.000877 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.1.519 | 0.000079 |
N | 251 | A251del | GCT | --- | 2 | 2 | B.1.1.519 | 0.000079 |
N | 251 | A251A | gcT | gcG | 1 | 2 | B.1.1.519 | 0.00004 |
N | 251 | A251A | gcT | gcC | 1 | 2 | B.1.1.519 | 0.00004 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.1.1.54 | 0.006042 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.142 | 0.005797 |
N | 251 | A251A | gcT | gcC | 2 | 2 | B.1.160 | 0.000062 |
N | 251 | A251G | gCt | gGt | 2 | 2 | B.1.177.21 | 0.000153 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.177.21 | 0.000153 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.177.4 | 0.000422 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.192 | 0.018519 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.206 | 0.001631 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.234 | 0.000264 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.1.243 | 0.000139 |
N | 251 | A251A | gcT | gcC | 2 | 2 | B.1.258 | 0.000133 |
N | 251 | A251A | gcT | gcA | 2 | 2 | B.1.320 | 0.002491 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.1.351.2 | 0.000605 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.351.2 | 0.000605 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.369 | 0.00057 |
N | 251 | A251A | gcT | gcC | 2 | 2 | B.1.416 | 0.002538 |
N | 251 | A251A | gcT | gcC | 2 | 2 | B.1.433 | 0.00639 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.1.438.1 | 0.000215 |
N | 251 | A251A | gcT | gcC | 2 | 2 | B.1.470 | 0.002809 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.517 | 0.000854 |
N | 251 | A251A | gcT | gcA | 1 | 2 | B.1.526 | 0.000024 |
N | 251 | A251A | gcT | gcC | 1 | 2 | B.1.526 | 0.000024 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.551 | 0.002581 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.575 | 0.000607 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.577 | 0.001375 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.580 | 0.00813 |
N | 251 | A251V | gCt | gTt | 2 | 2 | B.1.595 | 0.000522 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.1.596 | 0.000174 |
N | 251 | A251del | GCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
N | 251 | A251A | gcT | gcC | 2 | 2 | B.1.620 | 0.001892 |
N | 251 | A251del | GCT | --- | 2 | 2 | B.1.621 | 0.000177 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.1.628 | 0.000705 |
N | 251 | A251S | Gct | Tct | 2 | 2 | B.3 | 0.001661 |
N | 251 | A251S | Gct | Tct | 2 | 2 | D.2 | 0.00015 |
N | 251 | A251T | Gct | Act | 2 | 2 | D.2 | 0.00015 |
N | 251 | A251V | gCt | gTt | 2 | 2 | P.1.14 | 0.000096 |
N | 251 | A251V | gCt | gTt | 2 | 2 | P.1.2 | 0.002312 |
N | 251 | A251A | gcT | gcC | 2 | 2 | P.2 | 0.000373 |
N | 251 | A251V | gCt | gTt | 2 | 2 | Q.3 | 0.00029 |
N | 251 | A251A | gcT | gcA | 2 | 2 | R.1 | 0.00018 |
N | 251 | A251A | gcT | gcC | 1 | 1 | A.1 | 0.000282 |
N | 251 | A251V | gCt | gTt | 1 | 1 | A.17 | 0.090909 |
N | 251 | A251V | gCt | gTt | 1 | 1 | A.2 | 0.000662 |
N | 251 | A251V | gCt | gTt | 1 | 1 | A.2.2 | 0.001689 |
N | 251 | A251S | Gct | Tct | 1 | 1 | A.27 | 0.001656 |
N | 251 | A251V | gCt | gTt | 1 | 1 | A.27 | 0.001656 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
N | 251 | A251R | GCT | AGA | 1 | 1 | All | 0 |
N | 251 | A251E | gCT | gAA | 1 | 1 | All | 0 |
N | 251 | A251H | GCT | CAC | 1 | 1 | All | 0 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AP.1 | 0.001502 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.100 | 0.000046 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.100 | 0.000046 |
N | 251 | A251del | GCT | --- | 1 | 1 | AY.100 | 0.000046 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.101 | 0.00049 |
N | 251 | A251del | GCT | --- | 1 | 1 | AY.102 | 0.000027 |
N | 251 | A251D | gCt | gAt | 1 | 1 | AY.102 | 0.000027 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.105 | 0.000643 |
N | 251 | A251del | GCT | --- | 1 | 1 | AY.108 | 0.001103 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.11 | 0.001339 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.110 | 0.000113 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.111 | 0.000183 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.111 | 0.000183 |
N | 251 | A251G | gCt | gGt | 1 | 1 | AY.113 | 0.000142 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.116 | 0.000287 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.116.1 | 0.000311 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.119 | 0.000035 |
N | 251 | A251A | gcT | gcA | 1 | 1 | AY.12 | 0.000316 |
N | 251 | A251D | gCt | gAt | 1 | 1 | AY.120 | 0.000037 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.120.2 | 0.001285 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.13 | 0.000161 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.16 | 0.00038 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.16.1 | 0.00047 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.19 | 0.00114 |
N | 251 | A251E | gCT | gAA | 1 | 1 | AY.23 | 0.00007 |
N | 251 | A251G | gCt | gGt | 1 | 1 | AY.23 | 0.00007 |
N | 251 | A251A | gcT | gcG | 1 | 1 | AY.23 | 0.00007 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.23.1 | 0.000417 |
N | 251 | A251del1 | Gct | -ct | 1 | 1 | AY.25 | 0.000006 |
N | 251 | A251T | Gct | Act | 1 | 1 | AY.25 | 0.000006 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.3.1 | 0.000085 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
N | 251 | A251del | GCT | --- | 1 | 1 | AY.32 | 0.000532 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.32 | 0.000532 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.34 | 0.000097 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.34 | 0.000097 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.34.1 | 0.00051 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.37 | 0.000316 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
N | 251 | A251P | GcT | CcC | 1 | 1 | AY.4 | 0.000002 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.4.2 | 0.000022 |
N | 251 | A251T | Gct | Act | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.4.4 | 0.000409 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.4.5 | 0.000107 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.40 | 0.000964 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.41 | 0.000294 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.42 | 0.00004 |
N | 251 | A251G | gCt | gGt | 1 | 1 | AY.42 | 0.00004 |
N | 251 | A251T | Gct | Act | 1 | 1 | AY.43 | 0.000004 |
N | 251 | A251del1 | Gct | -ct | 1 | 1 | AY.43 | 0.000004 |
N | 251 | A251D | gCt | gAt | 1 | 1 | AY.43 | 0.000004 |
N | 251 | A251N | GCt | AAt | 1 | 1 | AY.43 | 0.000004 |
N | 251 | A251G | gCt | gGt | 1 | 1 | AY.44 | 0.000006 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.5 | 0.000021 |
N | 251 | A251del | GCT | --- | 1 | 1 | AY.5.3 | 0.000337 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.52 | 0.000814 |
N | 251 | A251T | Gct | Act | 1 | 1 | AY.53 | 0.000288 |
N | 251 | A251del | GCT | --- | 1 | 1 | AY.54 | 0.000095 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.59 | 0.00053 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.62 | 0.000436 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.63 | 0.000387 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.64 | 0.000595 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.69 | 0.000187 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.7 | 0.000196 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.7 | 0.000196 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.74 | 0.000116 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.75 | 0.000056 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.79 | 0.001211 |
N | 251 | A251T | Gct | Act | 1 | 1 | AY.82 | 0.001357 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.82 | 0.001357 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.84 | 0.000437 |
N | 251 | A251A | gcT | gcA | 1 | 1 | AY.84 | 0.000437 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.85 | 0.000427 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.89 | 0.004902 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
N | 251 | A251del | GCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.9.2.1 | 0.001976 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.90 | 0.000684 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
N | 251 | A251S | Gct | Tct | 1 | 1 | AY.92 | 0.000287 |
N | 251 | A251V | gCt | gTt | 1 | 1 | AY.96 | 0.002075 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.99 | 0.001049 |
N | 251 | A251A | gcT | gcC | 1 | 1 | AY.99.2 | 0.000092 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B | 0.000128 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B | 0.000128 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B | 0.000128 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1 | 0.000009 |
N | 251 | A251D | gCt | gAt | 1 | 1 | B.1 | 0.000009 |
N | 251 | A251P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
N | 251 | A251G | gCt | gGt | 1 | 1 | B.1 | 0.000009 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.1.1 | 0.000327 |
N | 251 | A251N | GCt | AAt | 1 | 1 | B.1.1.137 | 0.0125 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.1.139 | 0.022727 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.1.174 | 0.003378 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.1.176 | 0.000439 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.1.214 | 0.000055 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.1.217 | 0.003636 |
N | 251 | A251V | gCT | gTC | 1 | 1 | B.1.1.27 | 0.00565 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.1.284 | 0.000107 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.1.291 | 0.000742 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.1.294 | 0.001266 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.1.312 | 0.001912 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.1.312 | 0.001912 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.1.339 | 0.010526 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.1.355 | 0.015385 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.1.369 | 0.000446 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.1.409 | 0.002833 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.1.448 | 0.002033 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.1.466 | 0.008696 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.1.50 | 0.000679 |
N | 251 | A251P | Gct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
N | 251 | A251H | GCT | CAC | 1 | 1 | B.1.1.7 | 0.000001 |
N | 251 | A251R | GCT | AGA | 1 | 1 | B.1.1.7 | 0.000001 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.108 | 0.005814 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.139 | 0.000733 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.142 | 0.002899 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.147 | 0.000756 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.160.12 | 0.00641 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.160.17 | 0.001701 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.160.31 | 0.008065 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.177.12 | 0.000152 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.177.4 | 0.000211 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.177.45 | 0.000381 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.177.51 | 0.004566 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.177.52 | 0.001757 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.177.53 | 0.002392 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.177.6 | 0.000977 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.177.62 | 0.001192 |
N | 251 | A251L | GCt | CTt | 1 | 1 | B.1.177.63 | 0.002703 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.177.7 | 0.000165 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.177.8 | 0.000752 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.177.87 | 0.000728 |
N | 251 | A251del1 | Gct | -ct | 1 | 1 | B.1.2 | 0.000009 |
N | 251 | A251T | Gct | Act | 1 | 1 | B.1.2 | 0.000009 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.210 | 0.002132 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.218 | 0.005155 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.23 | 0.006061 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.234 | 0.000132 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.235 | 0.002519 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.240 | 0.000216 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
N | 251 | A251P | Gct | Cct | 1 | 1 | B.1.258.17 | 0.000104 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.268 | 0.010417 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.279 | 0.000514 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.280 | 0.007143 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.305 | 0.002151 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.311 | 0.000275 |
N | 251 | A251A | gcT | gcA | 1 | 1 | B.1.36 | 0.000146 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.36.17 | 0.000494 |
N | 251 | A251del1 | gcT | gc- | 1 | 1 | B.1.36.29 | 0.000517 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.36.38 | 0.001642 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.36.8 | 0.001 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.367 | 0.000792 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.369 | 0.000285 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.377 | 0.004566 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.380 | 0.006623 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.389 | 0.001002 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.427 | 0.00005 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.432 | 0.011236 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.438.1 | 0.000107 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 251 | A251G | gCt | gGt | 1 | 1 | B.1.466.2 | 0.000391 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.466.2 | 0.000391 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
N | 251 | A251T | Gct | Act | 1 | 1 | B.1.524 | 0.001406 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.524 | 0.001406 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.525 | 0.000113 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.525 | 0.000113 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.525 | 0.000113 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.527 | 0.003704 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.540 | 0.009709 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.545 | 0.014493 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.575 | 0.000303 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.580 | 0.004065 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
N | 251 | A251P | Gct | Cct | 1 | 1 | B.1.595 | 0.000261 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.595 | 0.000261 |
N | 251 | A251D | gCt | gAt | 1 | 1 | B.1.596 | 0.000087 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.604 | 0.017241 |
N | 251 | A251del | GCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 251 | A251A | gcT | gcC | 1 | 1 | B.1.617.1 | 0.000129 |
N | 251 | A251D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
N | 251 | A251del1 | GcT | -cC | 1 | 1 | B.1.617.2 | 0.000004 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.617.3 | 0.002985 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.621 | 0.000089 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.621.1 | 0.000506 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.1.623 | 0.000536 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
N | 251 | A251T | Gct | Act | 1 | 1 | B.1.634 | 0.003425 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.1.637 | 0.000073 |
N | 251 | A251V | gCt | gTt | 1 | 1 | B.11 | 0.005128 |
N | 251 | A251S | Gct | Tct | 1 | 1 | B.40 | 0.000364 |
N | 251 | A251A | gcT | gcC | 1 | 1 | C.14 | 0.004329 |
N | 251 | A251V | gCt | gTt | 1 | 1 | C.36 | 0.000911 |
N | 251 | A251S | Gct | Tct | 1 | 1 | C.37 | 0.000116 |
N | 251 | A251V | gCt | gTt | 1 | 1 | C.5 | 0.090909 |
N | 251 | A251del | GCT | --- | 1 | 1 | P.1 | 0.000016 |
N | 251 | A251del | GCT | --- | 1 | 1 | P.1.1 | 0.000318 |
N | 251 | A251A | gcT | gcA | 1 | 1 | P.1.10 | 0.000269 |
N | 251 | A251A | gcT | gcC | 1 | 1 | P.1.12 | 0.000484 |
N | 251 | A251T | Gct | Act | 1 | 1 | P.1.14 | 0.000048 |
N | 251 | A251A | gcT | gcC | 1 | 1 | P.1.15 | 0.000232 |
N | 251 | A251S | Gct | Tct | 1 | 1 | P.1.16 | 0.000374 |
N | 251 | A251S | Gct | Tct | 1 | 1 | P.1.2 | 0.001156 |
N | 251 | A251V | gCt | gTt | 1 | 1 | Q.1 | 0.000126 |
N | 251 | A251A | gcT | gcC | 1 | 1 | Q.1 | 0.000126 |
N | 251 | A251del | GCT | --- | 1 | 1 | Q.2 | 0.000613 |
N | 251 | A251V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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