CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 25

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N25G25CnonsynGgcTgc208720860.99952128346-28348
N25G25CnonsynGgCTgT208710.00047915728346-28348
N25G25GsynggCggT141614110.99646928346-28348
N25G25GsynggCggA141650.0035310728346-28348
N25G25DnonsyngGcgAc511511128346-28348
N25G25SnonsynGgcAgc430430128346-28348
N25G25VnonsyngGcgTc3703370.91081128346-28348
N25G25VnonsyngGCgTT370330.089189228346-28348
N25G25RnonsynGgcCgc2828128346-28348
N25G25deldelGGC---2525128346-28348
N25G25AnonsyngGcgCc33128346-28348
N25G25del1delGgc-gc33128346-28348
N25G25KnonsynGGCAAA22128346-28348
N25G25FnonsynGGcTTc22128346-28348
N25G25NnonsynGGcAAc11128346-28348
N25G25del2delGGc--c11128346-28348

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N25G25CGgcTgc20862087All0.000399
N25G25CGgCTgT12087All0
N25G25GggCggT14111416All0.00027
N25G25GggCggA51416All0.000001
N25G25DgGcgAc511511All0.000098
N25G25SGgcAgc430430All0.000082
N25G25VgGcgTc337370All0.000064
N25G25VgGCgTT33370All0.000006
N25G25GggCggT350350AY.1030.002173
N25G25CGgcTgc332332B.1.160.280.97076
N25G25CGgcTgc330330B.1.1.70.000295
N25G25CGgcTgc265265AY.250.001594
N25G25DgGcgAc254254B.1.5650.205835
N25G25GggCggT195195B.1.1.70.000175
N25G25SGgcAgc139139AY.40.000216
N25G25GggCggT127127AY.440.000773
N25G25CGgcTgc109109AY.40.00017
N25G25GggCggT107107AY.40.000167
N25G25GggCggT106106AY.250.000638
N25G25CGgcTgc9697B.1.617.20.000361
N25G25CGgCTgT197B.1.617.20.000004
N25G25CGgcTgc7474B.1.10.001342
N25G25VgGcgTc7171AY.40.000111
N25G25GggCggT7171B.1.617.20.000267
N25G25CGgcTgc6565AY.1030.000404
N25G25DgGcgAc6363B.1.1.70.000056
N25G25SGgcAgc5151AY.30.000507
N25G25CGgcTgc4949AY.440.000298
N25G25GggCggT4848AY.260.001359
N25G25CGgcTgc4747AY.430.000208
N25G25GggCggT4343AY.470.001338
N25G25SGgcAgc4242B.1.617.20.000158
N25G25DgGcgAc4040B.1.617.20.000151
N25G25GggCggT3939AY.430.000173
N25G25VgGCgTT3136AY.1030.000192
N25G25VgGcgTc536AY.1030.000031
N25G25CGgcTgc3434B.1.4010.278689
N25G25GggCggT3333AY.200.001283
N25G25CGgcTgc3333AY.30.000328
N25G25SGgcAgc3333B.1.1.70.00003
N25G25GggCggT3232AY.30.000318
N25G25CGgcTgc3131B.1.1600.000967
N25G25CGgcTgc3131B.1.177.750.032258
N25G25CGgcTgc3030B.1.1150.652174
N25G25VgGcgTc3030B.1.1600.000936
N25G25GggCggT2929AY.1180.001817
N25G25VgGcgTc2929AY.430.000128
N25G25CGgcTgc2929B.10.000266
N25G25RGgcCgc2828All0.000005
N25G25VgGcgTc2828B.1.1.70.000025
N25G25SGgcAgc2727AY.1030.000168
N25G25DgGcgAc2727AY.40.000042
N25G25CGgcTgc2727B.1.1770.000356
N25G25VgGcgTc2527B.1.617.20.000094
N25G25VgGCgTT227B.1.617.20.000008
N25G25CGgcTgc2626AY.390.000642
N25G25delGGC---2525All0.000005
N25G25RGgcCgc2525AY.440.000152
N25G25CGgcTgc2525B.1.20.00022
N25G25GggCggT2424AY.540.002288
N25G25SGgcAgc2323AY.430.000102
N25G25GggCggT2222A.23.10.015493
N25G25CGgcTgc2121AY.200.000816
N25G25VgGcgTc2121AY.440.000128
N25G25CGgcTgc2020AY.1020.00053
N25G25CGgcTgc1818B.1.4290.000424
N25G25GggCggT1616AY.1190.000565
N25G25CGgcTgc1515B.1.2580.000998
N25G25CGgcTgc1414AY.1180.000877
N25G25CGgcTgc1414B.1.1.390.007136
N25G25VgGcgTc1313B.1.1.2730.087838
N25G25SGgcAgc1313B.1.20.000114
N25G25GggCggT1212AY.116.10.003737
N25G25DgGcgAc1212P.10.000189
N25G25GggCggT1111AY.140.000968
N25G25CGgcTgc1111B.1.1.4800.275
N25G25GggCggT811B.1.20.00007
N25G25GggCggA311B.1.20.000026
N25G25CGgcTgc1010AY.1190.000353
N25G25CGgcTgc1010B.1.3510.000297
N25G25CGgcTgc1010P.1.100.002695
N25G25VgGcgTc99AY.4.50.000967
N25G25GggCggT99AY.99.20.000829
N25G25CGgcTgc99B.1.360.001313
N25G25SGgcAgc99P.10.000142
N25G25VgGcgTc99P.10.000142
N25G25CGgcTgc99P.1.140.00043
N25G25DgGcgAc88AY.390.000198
N25G25GggCggT88AY.60.000329
N25G25SGgcAgc88AY.750.000448
N25G25DgGcgAc88B.10.000073
N25G25SGgcAgc88B.1.3510.000238
N25G25CGgcTgc88B.1.351.30.007011
N25G25DgGcgAc77AY.1030.000043
N25G25CGgcTgc77AY.330.000467
N25G25GggCggT77AY.330.000467
N25G25GggCggT77AY.390.000173
N25G25CGgcTgc77AY.4.2.10.001043
N25G25DgGcgAc77AY.440.000043
N25G25CGgcTgc77B.1.1.5190.000278
N25G25CGgcTgc77B.1.3690.001997
N25G25CGgcTgc77B.1.4700.009831
N25G25CGgcTgc77B.1.5260.000165
N25G25GggCggT77B.1.5260.000165
N25G25CGgcTgc77P.10.00011
N25G25SGgcAgc77P.20.001306
N25G25CGgcTgc66A.2.50.002994
N25G25VgGcgTc66AY.250.000036
N25G25SGgcAgc66AY.250.000036
N25G25GggCggT66AY.290.000095
N25G25CGgcTgc66AY.300.002374
N25G25SGgcAgc66AY.440.000037
N25G25CGgcTgc66AY.7.10.000676
N25G25VgGcgTc66B.1.20.000053
N25G25VgGcgTc66B.1.2580.000399
N25G25VgGcgTc66B.1.36.290.003104
N25G25GggCggT66P.10.000095
N25G25CGgcTgc66U.30.023166
N25G25GggCggT55AY.1170.000423
N25G25VgGcgTc55AY.30.00005
N25G25CGgcTgc55AY.420.000201
N25G25CGgcTgc55AY.99.20.000461
N25G25delGGC---55B.1.1.70.000004
N25G25CGgcTgc55B.1.177.480.015625
N25G25CGgcTgc55B.1.2410.004058
N25G25DgGcgAc55B.1.4290.000118
N25G25CGgcTgc55B.1.6210.000443
N25G25CGgcTgc55D.20.000375
N25G25GggCggT44AY.1000.000184
N25G25GggCggT44AY.1020.000106
N25G25GggCggT44AY.1130.00057
N25G25CGgcTgc44AY.360.000593
N25G25VgGcgTc44AY.390.000099
N25G25CGgcTgc44AY.460.000416
N25G25CGgcTgc44AY.470.000124
N25G25GggCggT44AY.670.001857
N25G25CGgcTgc44AY.690.000747
N25G25CGgcTgc44AY.9.20.000147
N25G25GggCggT34B.10.000027
N25G25GggCggA14B.10.000009
N25G25DgGcgAc44B.1.1.330.001684
N25G25GggCggT44B.1.177.70.000659
N25G25CGgcTgc44B.1.177.790.009368
N25G25CGgcTgc44B.1.177.820.001909
N25G25DgGcgAc44B.1.258.170.000416
N25G25CGgcTgc44B.1.4270.000202
N25G25CGgcTgc44B.1.617.10.000516
N25G25VgGcgTc44P.1.170.000647
N25G25SGgcAgc44Q.30.00058
N25G25AgGcgCc33All0.000001
N25G25del1Ggc-gc33All0.000001
N25G25SGgcAgc33AY.1020.00008
N25G25DgGcgAc33AY.1020.00008
N25G25CGgcTgc33AY.1060.001005
N25G25CGgcTgc33AY.1140.000693
N25G25CGgcTgc33AY.1210.000406
N25G25GggCggT33AY.130.000483
N25G25DgGcgAc33AY.200.000117
N25G25CGgcTgc33AY.290.000047
N25G25CGgcTgc33AY.340.000291
N25G25DgGcgAc33AY.39.10.000119
N25G25DgGcgAc33AY.430.000013
N25G25delGGC---33AY.50.000062
N25G25CGgcTgc33AY.590.001589
N25G25CGgcTgc33AY.710.001425
N25G25GggCggT33AY.750.000168
N25G25SGgcAgc33B.1.10.000054
N25G25VgGcgTc33B.1.10.000054
N25G25CGgcTgc33B.1.1.2770.002276
N25G25CGgcTgc33B.1.1.500.002037
N25G25SGgcAgc33B.1.1770.00004
N25G25DgGcgAc33B.1.1770.00004
N25G25GggCggT33B.1.177.510.013699
N25G25VgGcgTc33B.1.177.680.045455
N25G25VgGcgTc33B.1.2210.000213
N25G25SGgcAgc33B.1.2210.000213
N25G25VgGcgTc33B.1.360.000438
N25G25CGgcTgc33B.1.4000.001287
N25G25SGgcAgc33B.1.5260.000071
N25G25CGgcTgc33C.160.003181
N25G25CGgcTgc33C.170.166667
N25G25CGgcTgc33C.360.002732
N25G25GggCggT33P.1.150.000697
N25G25SGgcAgc22AD.20.000438
N25G25FGGcTTc22All0
N25G25KGGCAAA22All0
N25G25GggCggT22AY.10.000791
N25G25SGgcAgc22AY.1000.000092
N25G25DgGcgAc22AY.1000.000092
N25G25VgGcgTc22AY.1050.001286
N25G25GggCggT22AY.1140.000462
N25G25DgGcgAc22AY.1160.000574
N25G25VgGcgTc22AY.1190.000071
N25G25CGgcTgc22AY.120.000632
N25G25DgGcgAc22AY.1200.000074
N25G25CGgcTgc22AY.1200.000074
N25G25CGgcTgc22AY.140.000176
N25G25GggCggT22AY.20.000712
N25G25SGgcAgc22AY.200.000078
N25G25GggCggT12AY.230.00007
N25G25GggCggA12AY.230.00007
N25G25DgGcgAc22AY.250.000012
N25G25CGgcTgc22AY.260.000057
N25G25VgGcgTc22AY.290.000032
N25G25DgGcgAc22AY.30.00002
N25G25CGgcTgc22AY.3.10.000171
N25G25delGGC---22AY.40.000003
N25G25CGgcTgc22AY.4.20.000043
N25G25delGGC---22AY.430.000009
N25G25RGgcCgc22AY.430.000009
N25G25SGgcAgc22AY.460.000208
N25G25GggCggT22AY.460.000208
N25G25GggCggT22AY.46.60.000144
N25G25VgGcgTc22AY.46.60.000144
N25G25CGgcTgc22AY.50.000041
N25G25DgGcgAc22AY.50.000041
N25G25VgGcgTc22AY.520.001629
N25G25DgGcgAc22AY.60.000082
N25G25DgGcgAc22AY.610.00021
N25G25CGgcTgc22AY.650.001066
N25G25DgGcgAc22AY.670.000929
N25G25CGgcTgc22AY.75.10.000361
N25G25CGgcTgc22AY.9.10.000167
N25G25SGgcAgc22AY.9.20.000073
N25G25VgGcgTc22AY.980.000158
N25G25GggCggT22AY.98.10.000097
N25G25CGgcTgc22AY.98.10.000097
N25G25CGgcTgc22B0.000256
N25G25AgGcgCc22B.10.000018
N25G25VgGcgTc22B.10.000018
N25G25DgGcgAc22B.1.10.000036
N25G25CGgcTgc22B.1.1.10.000653
N25G25CGgcTgc22B.1.1.280.000622
N25G25CGgcTgc22B.1.1.3110.000716
N25G25CGgcTgc22B.1.1.3120.003824
N25G25CGgcTgc22B.1.1.370.000386
N25G25DgGcgAc22B.1.1.4160.00181
N25G25SGgcAgc22B.1.1.5190.000079
N25G25DgGcgAc22B.1.1390.001466
N25G25CGgcTgc22B.1.177.600.000437
N25G25DgGcgAc22B.1.20.000018
N25G25CGgcTgc22B.1.2210.000142
N25G25SGgcAgc22B.1.2340.000264
N25G25GggCggT22B.1.2430.000139
N25G25CGgcTgc22B.1.3240.00321
N25G25CGgcTgc22B.1.36.240.012346
N25G25CGgcTgc22B.1.4090.001563
N25G25CGgcTgc22B.1.4560.006536
N25G25DgGcgAc22B.1.4600.035714
N25G25CGgcTgc22B.1.5750.000607
N25G25CGgcTgc22B.1.6370.000146
N25G25VgGcgTc22C.40.02
N25G25CGgcTgc22P.1.40.001953
N25G25GggCggT22P.1.70.000639
N25G25CGgcTgc22P.20.000373
N25G25GggCggT22Q.80.00033
N25G25del2GGc--c11All0
N25G25NGGcAAc11All0
N25G25CGgcTgc11AY.1000.000046
N25G25VgGcgTc11AY.1020.000027
N25G25GggCggT11AY.1070.000466
N25G25CGgcTgc11AY.1080.001103
N25G25GggCggT11AY.1100.000113
N25G25VgGcgTc11AY.1130.000142
N25G25SGgcAgc11AY.116.10.000311
N25G25CGgcTgc11AY.1170.000085
N25G25SGgcAgc11AY.1180.000063
N25G25DgGcgAc11AY.1190.000035
N25G25SGgcAgc11AY.1190.000035
N25G25delGGC---11AY.1200.000037
N25G25GggCggT11AY.1200.000037
N25G25DgGcgAc11AY.120.20.001285
N25G25VgGcgTc11AY.1210.000135
N25G25DgGcgAc11AY.1210.000135
N25G25SGgcAgc11AY.140.000088
N25G25SGgcAgc11AY.160.00038
N25G25KGGCAAA11AY.180.010101
N25G25CGgcTgc11AY.20.000356
N25G25DgGcgAc11AY.230.00007
N25G25SGgcAgc11AY.230.00007
N25G25FGGcTTc11AY.250.000006
N25G25CGgcTgc11AY.280.00189
N25G25SGgcAgc11AY.290.000016
N25G25DgGcgAc11AY.29.10.000221
N25G25VgGcgTc11AY.29.10.000221
N25G25del1Ggc-gc11AY.30.00001
N25G25SGgcAgc11AY.390.000025
N25G25CGgcTgc11AY.39.10.00004
N25G25GggCggT11AY.39.10.00004
N25G25GggCggT11AY.39.20.001541
N25G25VgGcgTc11AY.4.20.000022
N25G25DgGcgAc11AY.4.20.000022
N25G25CGgcTgc11AY.4.40.000409
N25G25delGGC---11AY.4.40.000409
N25G25SGgcAgc11AY.420.00004
N25G25DgGcgAc11AY.420.00004
N25G25GggCggT11AY.420.00004
N25G25KGGCAAA11AY.440.000006
N25G25delGGC---11AY.440.000006
N25G25VgGcgTc11AY.450.000122
N25G25GggCggT11AY.450.000122
N25G25CGgcTgc11AY.450.000122
N25G25delGGC---11AY.460.000104
N25G25VgGcgTc11AY.460.000104
N25G25GggCggT11AY.46.10.001027
N25G25CGgcTgc11AY.46.50.000198
N25G25CGgcTgc11AY.46.60.000072
N25G25delGGC---11AY.46.60.000072
N25G25DgGcgAc11AY.470.000031
N25G25VgGcgTc11AY.470.000031
N25G25GggCggT11AY.50.000021
N25G25SGgcAgc11AY.50.000021
N25G25delGGC---11AY.5.30.000337
N25G25GggCggT11AY.5.30.000337
N25G25VgGcgTc11AY.530.000288
N25G25VgGcgTc11AY.540.000095
N25G25CGgcTgc11AY.550.000917
N25G25SGgcAgc11AY.60.000041
N25G25CGgcTgc11AY.60.000041
N25G25VgGcgTc11AY.60.000041
N25G25GggCggT11AY.600.000938
N25G25VgGcgTc11AY.610.000105
N25G25CGgcTgc11AY.610.000105
N25G25GggCggT11AY.630.000387
N25G25GggCggT11AY.640.000595
N25G25CGgcTgc11AY.670.000464
N25G25CGgcTgc11AY.680.000274
N25G25DgGcgAc11AY.680.000274
N25G25DgGcgAc11AY.700.000209
N25G25CGgcTgc11AY.850.000427
N25G25VgGcgTc11AY.850.000427
N25G25CGgcTgc11AY.90.000068
N25G25GggCggT11AY.90.000068
N25G25VgGcgTc11AY.9.10.000084
N25G25SGgcAgc11AY.9.10.000084
N25G25GggCggT11AY.9.20.000037
N25G25GggCggT11AY.920.000287
N25G25SGgcAgc11AY.920.000287
N25G25CGgcTgc11AY.950.000761
N25G25GggCggT11AY.980.000079
N25G25DgGcgAc11AY.980.000079
N25G25CGgcTgc11AY.980.000079
N25G25DgGcgAc11AY.98.10.000048
N25G25DgGcgAc11AY.99.20.000092
N25G25CGgcTgc11AZ.20.000821
N25G25GggCggT11B0.000128
N25G25del2GGc--c11B.10.000009
N25G25SGgcAgc11B.10.000009
N25G25delGGC---11B.10.000009
N25G25FGGcTTc11B.10.000009
N25G25del1Ggc-gc11B.10.000009
N25G25delGGC---11B.1.10.000018
N25G25delGGC---11B.1.1.1390.022727
N25G25CGgcTgc11B.1.1.1700.001247
N25G25DgGcgAc11B.1.1.1700.001247
N25G25CGgcTgc11B.1.1.1740.003378
N25G25DgGcgAc11B.1.1.2140.000055
N25G25delGGC---11B.1.1.2160.00089
N25G25CGgcTgc11B.1.1.2200.001859
N25G25VgGcgTc11B.1.1.2220.000204
N25G25CGgcTgc11B.1.1.2510.007937
N25G25CGgcTgc11B.1.1.2680.014925
N25G25CGgcTgc11B.1.1.2840.000107
N25G25DgGcgAc11B.1.1.3060.000438
N25G25SGgcAgc11B.1.1.3110.000358
N25G25DgGcgAc11B.1.1.3170.000412
N25G25CGgcTgc11B.1.1.3180.000302
N25G25CGgcTgc11B.1.1.3480.000796
N25G25DgGcgAc11B.1.1.370.000193
N25G25CGgcTgc11B.1.1.3750.011905
N25G25CGgcTgc11B.1.1.3970.002252
N25G25VgGcgTc11B.1.1.4160.000905
N25G25CGgcTgc11B.1.1.4160.000905
N25G25CGgcTgc11B.1.1.4330.001425
N25G25SGgcAgc11B.1.1.4340.000349
N25G25VgGcgTc11B.1.1.4590.015385
N25G25DgGcgAc11B.1.1.510.001718
N25G25GggCggT11B.1.1.5190.00004
N25G25DgGcgAc11B.1.1.5190.00004
N25G25VgGcgTc11B.1.1.630.000386
N25G25SGgcAgc11B.1.1.700.000341
N25G25DgGcgAc11B.1.1.720.030303
N25G25del1Ggc-gc11B.1.110.30.000718
N25G25VgGcgTc11B.1.1470.000756
N25G25delGGC---11B.1.1600.000031
N25G25GggCggT11B.1.1770.000013
N25G25VgGcgTc11B.1.1770.000013
N25G25CGgcTgc11B.1.177.310.011494
N25G25SGgcAgc11B.1.177.630.002703
N25G25VgGcgTc11B.1.177.760.002494
N25G25GggCggT11B.1.2210.000071
N25G25CGgcTgc11B.1.2320.000537
N25G25DgGcgAc11B.1.2430.00007
N25G25DgGcgAc11B.1.2580.000067
N25G25VgGcgTc11B.1.2600.003344
N25G25delGGC---11B.1.2640.012346
N25G25CGgcTgc11B.1.2790.000514
N25G25CGgcTgc11B.1.3110.000275
N25G25CGgcTgc11B.1.3320.003497
N25G25DgGcgAc11B.1.3400.004292
N25G25DgGcgAc11B.1.3510.00003
N25G25AgGcgCc11B.1.351.30.000876
N25G25CGgcTgc11B.1.36.80.001
N25G25DgGcgAc11B.1.3690.000285
N25G25DgGcgAc11B.1.3780.006849
N25G25CGgcTgc11B.1.3900.010638
N25G25VgGcgTc11B.1.3950.007042
N25G25GggCggT11B.1.4080.00369
N25G25CGgcTgc11B.1.4080.00369
N25G25SGgcAgc11B.1.4270.00005
N25G25GggCggT11B.1.4290.000024
N25G25SGgcAgc11B.1.4290.000024
N25G25DgGcgAc11B.1.438.10.000107
N25G25delGGC---11B.1.4390.005917
N25G25CGgcTgc11B.1.4410.009615
N25G25CGgcTgc11B.1.4530.003236
N25G25DgGcgAc11B.1.466.20.000391
N25G25CGgcTgc11B.1.5040.03125
N25G25CGgcTgc11B.1.5610.000397
N25G25GggCggT11B.1.5610.000397
N25G25CGgcTgc11B.1.5640.000426
N25G25CGgcTgc11B.1.5680.001111
N25G25VgGcgTc11B.1.5820.000491
N25G25GggCggT11B.1.5950.000261
N25G25CGgcTgc11B.1.6090.000479
N25G25VgGcgTc11B.1.6090.000479
N25G25GggCggT11B.1.6090.000479
N25G25VgGcgTc11B.1.617.10.000129
N25G25SGgcAgc11B.1.617.10.000129
N25G25NGGcAAc11B.1.617.20.000004
N25G25RGgcCgc11B.1.617.20.000004
N25G25CGgcTgc11B.1.6250.002353
N25G25SGgcAgc11B.1.6370.000073
N25G25VgGcgTc11B.1.6370.000073
N25G25GggCggT11B.1.6370.000073
N25G25VgGcgTc11B.400.000364
N25G25GggCggT11B.520.010101
N25G25VgGcgTc11C.300.001727
N25G25VgGcgTc11C.350.000774
N25G25SGgcAgc11C.360.000911
N25G25SGgcAgc11C.370.000116
N25G25CGgcTgc11C.370.000116
N25G25GggCggT11D.20.000075
N25G25VgGcgTc11P.1.140.000048
N25G25SGgcAgc11P.1.150.000232
N25G25CGgcTgc11P.1.170.000162
N25G25VgGcgTc11Q.30.000145
N25G25CGgcTgc11Q.80.000165
N25G25CGgcTgc11R.10.00009