CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 25 | G25C | nonsyn | Ggc | Tgc | 2087 | 2086 | 0.999521 | 28346-28348 | |
N | 25 | G25C | nonsyn | GgC | TgT | 2087 | 1 | 0.000479157 | 28346-28348 | |
N | 25 | G25G | syn | ggC | ggT | 1416 | 1411 | 0.996469 | 28346-28348 | |
N | 25 | G25G | syn | ggC | ggA | 1416 | 5 | 0.00353107 | 28346-28348 | |
N | 25 | G25D | nonsyn | gGc | gAc | 511 | 511 | 1 | 28346-28348 | |
N | 25 | G25S | nonsyn | Ggc | Agc | 430 | 430 | 1 | 28346-28348 | |
N | 25 | G25V | nonsyn | gGc | gTc | 370 | 337 | 0.910811 | 28346-28348 | |
N | 25 | G25V | nonsyn | gGC | gTT | 370 | 33 | 0.0891892 | 28346-28348 | |
N | 25 | G25R | nonsyn | Ggc | Cgc | 28 | 28 | 1 | 28346-28348 | |
N | 25 | G25del | del | GGC | --- | 25 | 25 | 1 | 28346-28348 | |
N | 25 | G25A | nonsyn | gGc | gCc | 3 | 3 | 1 | 28346-28348 | |
N | 25 | G25del1 | del | Ggc | -gc | 3 | 3 | 1 | 28346-28348 | |
N | 25 | G25K | nonsyn | GGC | AAA | 2 | 2 | 1 | 28346-28348 | |
N | 25 | G25F | nonsyn | GGc | TTc | 2 | 2 | 1 | 28346-28348 | |
N | 25 | G25N | nonsyn | GGc | AAc | 1 | 1 | 1 | 28346-28348 | |
N | 25 | G25del2 | del | GGc | --c | 1 | 1 | 1 | 28346-28348 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 25 | G25C | Ggc | Tgc | 2086 | 2087 | All | 0.000399 |
N | 25 | G25C | GgC | TgT | 1 | 2087 | All | 0 |
N | 25 | G25G | ggC | ggT | 1411 | 1416 | All | 0.00027 |
N | 25 | G25G | ggC | ggA | 5 | 1416 | All | 0.000001 |
N | 25 | G25D | gGc | gAc | 511 | 511 | All | 0.000098 |
N | 25 | G25S | Ggc | Agc | 430 | 430 | All | 0.000082 |
N | 25 | G25V | gGc | gTc | 337 | 370 | All | 0.000064 |
N | 25 | G25V | gGC | gTT | 33 | 370 | All | 0.000006 |
N | 25 | G25G | ggC | ggT | 350 | 350 | AY.103 | 0.002173 |
N | 25 | G25C | Ggc | Tgc | 332 | 332 | B.1.160.28 | 0.97076 |
N | 25 | G25C | Ggc | Tgc | 330 | 330 | B.1.1.7 | 0.000295 |
N | 25 | G25C | Ggc | Tgc | 265 | 265 | AY.25 | 0.001594 |
N | 25 | G25D | gGc | gAc | 254 | 254 | B.1.565 | 0.205835 |
N | 25 | G25G | ggC | ggT | 195 | 195 | B.1.1.7 | 0.000175 |
N | 25 | G25S | Ggc | Agc | 139 | 139 | AY.4 | 0.000216 |
N | 25 | G25G | ggC | ggT | 127 | 127 | AY.44 | 0.000773 |
N | 25 | G25C | Ggc | Tgc | 109 | 109 | AY.4 | 0.00017 |
N | 25 | G25G | ggC | ggT | 107 | 107 | AY.4 | 0.000167 |
N | 25 | G25G | ggC | ggT | 106 | 106 | AY.25 | 0.000638 |
N | 25 | G25C | Ggc | Tgc | 96 | 97 | B.1.617.2 | 0.000361 |
N | 25 | G25C | GgC | TgT | 1 | 97 | B.1.617.2 | 0.000004 |
N | 25 | G25C | Ggc | Tgc | 74 | 74 | B.1.1 | 0.001342 |
N | 25 | G25V | gGc | gTc | 71 | 71 | AY.4 | 0.000111 |
N | 25 | G25G | ggC | ggT | 71 | 71 | B.1.617.2 | 0.000267 |
N | 25 | G25C | Ggc | Tgc | 65 | 65 | AY.103 | 0.000404 |
N | 25 | G25D | gGc | gAc | 63 | 63 | B.1.1.7 | 0.000056 |
N | 25 | G25S | Ggc | Agc | 51 | 51 | AY.3 | 0.000507 |
N | 25 | G25C | Ggc | Tgc | 49 | 49 | AY.44 | 0.000298 |
N | 25 | G25G | ggC | ggT | 48 | 48 | AY.26 | 0.001359 |
N | 25 | G25C | Ggc | Tgc | 47 | 47 | AY.43 | 0.000208 |
N | 25 | G25G | ggC | ggT | 43 | 43 | AY.47 | 0.001338 |
N | 25 | G25S | Ggc | Agc | 42 | 42 | B.1.617.2 | 0.000158 |
N | 25 | G25D | gGc | gAc | 40 | 40 | B.1.617.2 | 0.000151 |
N | 25 | G25G | ggC | ggT | 39 | 39 | AY.43 | 0.000173 |
N | 25 | G25V | gGC | gTT | 31 | 36 | AY.103 | 0.000192 |
N | 25 | G25V | gGc | gTc | 5 | 36 | AY.103 | 0.000031 |
N | 25 | G25C | Ggc | Tgc | 34 | 34 | B.1.401 | 0.278689 |
N | 25 | G25G | ggC | ggT | 33 | 33 | AY.20 | 0.001283 |
N | 25 | G25C | Ggc | Tgc | 33 | 33 | AY.3 | 0.000328 |
N | 25 | G25S | Ggc | Agc | 33 | 33 | B.1.1.7 | 0.00003 |
N | 25 | G25G | ggC | ggT | 32 | 32 | AY.3 | 0.000318 |
N | 25 | G25C | Ggc | Tgc | 31 | 31 | B.1.160 | 0.000967 |
N | 25 | G25C | Ggc | Tgc | 31 | 31 | B.1.177.75 | 0.032258 |
N | 25 | G25C | Ggc | Tgc | 30 | 30 | B.1.115 | 0.652174 |
N | 25 | G25V | gGc | gTc | 30 | 30 | B.1.160 | 0.000936 |
N | 25 | G25G | ggC | ggT | 29 | 29 | AY.118 | 0.001817 |
N | 25 | G25V | gGc | gTc | 29 | 29 | AY.43 | 0.000128 |
N | 25 | G25C | Ggc | Tgc | 29 | 29 | B.1 | 0.000266 |
N | 25 | G25R | Ggc | Cgc | 28 | 28 | All | 0.000005 |
N | 25 | G25V | gGc | gTc | 28 | 28 | B.1.1.7 | 0.000025 |
N | 25 | G25S | Ggc | Agc | 27 | 27 | AY.103 | 0.000168 |
N | 25 | G25D | gGc | gAc | 27 | 27 | AY.4 | 0.000042 |
N | 25 | G25C | Ggc | Tgc | 27 | 27 | B.1.177 | 0.000356 |
N | 25 | G25V | gGc | gTc | 25 | 27 | B.1.617.2 | 0.000094 |
N | 25 | G25V | gGC | gTT | 2 | 27 | B.1.617.2 | 0.000008 |
N | 25 | G25C | Ggc | Tgc | 26 | 26 | AY.39 | 0.000642 |
N | 25 | G25del | GGC | --- | 25 | 25 | All | 0.000005 |
N | 25 | G25R | Ggc | Cgc | 25 | 25 | AY.44 | 0.000152 |
N | 25 | G25C | Ggc | Tgc | 25 | 25 | B.1.2 | 0.00022 |
N | 25 | G25G | ggC | ggT | 24 | 24 | AY.54 | 0.002288 |
N | 25 | G25S | Ggc | Agc | 23 | 23 | AY.43 | 0.000102 |
N | 25 | G25G | ggC | ggT | 22 | 22 | A.23.1 | 0.015493 |
N | 25 | G25C | Ggc | Tgc | 21 | 21 | AY.20 | 0.000816 |
N | 25 | G25V | gGc | gTc | 21 | 21 | AY.44 | 0.000128 |
N | 25 | G25C | Ggc | Tgc | 20 | 20 | AY.102 | 0.00053 |
N | 25 | G25C | Ggc | Tgc | 18 | 18 | B.1.429 | 0.000424 |
N | 25 | G25G | ggC | ggT | 16 | 16 | AY.119 | 0.000565 |
N | 25 | G25C | Ggc | Tgc | 15 | 15 | B.1.258 | 0.000998 |
N | 25 | G25C | Ggc | Tgc | 14 | 14 | AY.118 | 0.000877 |
N | 25 | G25C | Ggc | Tgc | 14 | 14 | B.1.1.39 | 0.007136 |
N | 25 | G25V | gGc | gTc | 13 | 13 | B.1.1.273 | 0.087838 |
N | 25 | G25S | Ggc | Agc | 13 | 13 | B.1.2 | 0.000114 |
N | 25 | G25G | ggC | ggT | 12 | 12 | AY.116.1 | 0.003737 |
N | 25 | G25D | gGc | gAc | 12 | 12 | P.1 | 0.000189 |
N | 25 | G25G | ggC | ggT | 11 | 11 | AY.14 | 0.000968 |
N | 25 | G25C | Ggc | Tgc | 11 | 11 | B.1.1.480 | 0.275 |
N | 25 | G25G | ggC | ggT | 8 | 11 | B.1.2 | 0.00007 |
N | 25 | G25G | ggC | ggA | 3 | 11 | B.1.2 | 0.000026 |
N | 25 | G25C | Ggc | Tgc | 10 | 10 | AY.119 | 0.000353 |
N | 25 | G25C | Ggc | Tgc | 10 | 10 | B.1.351 | 0.000297 |
N | 25 | G25C | Ggc | Tgc | 10 | 10 | P.1.10 | 0.002695 |
N | 25 | G25V | gGc | gTc | 9 | 9 | AY.4.5 | 0.000967 |
N | 25 | G25G | ggC | ggT | 9 | 9 | AY.99.2 | 0.000829 |
N | 25 | G25C | Ggc | Tgc | 9 | 9 | B.1.36 | 0.001313 |
N | 25 | G25S | Ggc | Agc | 9 | 9 | P.1 | 0.000142 |
N | 25 | G25V | gGc | gTc | 9 | 9 | P.1 | 0.000142 |
N | 25 | G25C | Ggc | Tgc | 9 | 9 | P.1.14 | 0.00043 |
N | 25 | G25D | gGc | gAc | 8 | 8 | AY.39 | 0.000198 |
N | 25 | G25G | ggC | ggT | 8 | 8 | AY.6 | 0.000329 |
N | 25 | G25S | Ggc | Agc | 8 | 8 | AY.75 | 0.000448 |
N | 25 | G25D | gGc | gAc | 8 | 8 | B.1 | 0.000073 |
N | 25 | G25S | Ggc | Agc | 8 | 8 | B.1.351 | 0.000238 |
N | 25 | G25C | Ggc | Tgc | 8 | 8 | B.1.351.3 | 0.007011 |
N | 25 | G25D | gGc | gAc | 7 | 7 | AY.103 | 0.000043 |
N | 25 | G25C | Ggc | Tgc | 7 | 7 | AY.33 | 0.000467 |
N | 25 | G25G | ggC | ggT | 7 | 7 | AY.33 | 0.000467 |
N | 25 | G25G | ggC | ggT | 7 | 7 | AY.39 | 0.000173 |
N | 25 | G25C | Ggc | Tgc | 7 | 7 | AY.4.2.1 | 0.001043 |
N | 25 | G25D | gGc | gAc | 7 | 7 | AY.44 | 0.000043 |
N | 25 | G25C | Ggc | Tgc | 7 | 7 | B.1.1.519 | 0.000278 |
N | 25 | G25C | Ggc | Tgc | 7 | 7 | B.1.369 | 0.001997 |
N | 25 | G25C | Ggc | Tgc | 7 | 7 | B.1.470 | 0.009831 |
N | 25 | G25C | Ggc | Tgc | 7 | 7 | B.1.526 | 0.000165 |
N | 25 | G25G | ggC | ggT | 7 | 7 | B.1.526 | 0.000165 |
N | 25 | G25C | Ggc | Tgc | 7 | 7 | P.1 | 0.00011 |
N | 25 | G25S | Ggc | Agc | 7 | 7 | P.2 | 0.001306 |
N | 25 | G25C | Ggc | Tgc | 6 | 6 | A.2.5 | 0.002994 |
N | 25 | G25V | gGc | gTc | 6 | 6 | AY.25 | 0.000036 |
N | 25 | G25S | Ggc | Agc | 6 | 6 | AY.25 | 0.000036 |
N | 25 | G25G | ggC | ggT | 6 | 6 | AY.29 | 0.000095 |
N | 25 | G25C | Ggc | Tgc | 6 | 6 | AY.30 | 0.002374 |
N | 25 | G25S | Ggc | Agc | 6 | 6 | AY.44 | 0.000037 |
N | 25 | G25C | Ggc | Tgc | 6 | 6 | AY.7.1 | 0.000676 |
N | 25 | G25V | gGc | gTc | 6 | 6 | B.1.2 | 0.000053 |
N | 25 | G25V | gGc | gTc | 6 | 6 | B.1.258 | 0.000399 |
N | 25 | G25V | gGc | gTc | 6 | 6 | B.1.36.29 | 0.003104 |
N | 25 | G25G | ggC | ggT | 6 | 6 | P.1 | 0.000095 |
N | 25 | G25C | Ggc | Tgc | 6 | 6 | U.3 | 0.023166 |
N | 25 | G25G | ggC | ggT | 5 | 5 | AY.117 | 0.000423 |
N | 25 | G25V | gGc | gTc | 5 | 5 | AY.3 | 0.00005 |
N | 25 | G25C | Ggc | Tgc | 5 | 5 | AY.42 | 0.000201 |
N | 25 | G25C | Ggc | Tgc | 5 | 5 | AY.99.2 | 0.000461 |
N | 25 | G25del | GGC | --- | 5 | 5 | B.1.1.7 | 0.000004 |
N | 25 | G25C | Ggc | Tgc | 5 | 5 | B.1.177.48 | 0.015625 |
N | 25 | G25C | Ggc | Tgc | 5 | 5 | B.1.241 | 0.004058 |
N | 25 | G25D | gGc | gAc | 5 | 5 | B.1.429 | 0.000118 |
N | 25 | G25C | Ggc | Tgc | 5 | 5 | B.1.621 | 0.000443 |
N | 25 | G25C | Ggc | Tgc | 5 | 5 | D.2 | 0.000375 |
N | 25 | G25G | ggC | ggT | 4 | 4 | AY.100 | 0.000184 |
N | 25 | G25G | ggC | ggT | 4 | 4 | AY.102 | 0.000106 |
N | 25 | G25G | ggC | ggT | 4 | 4 | AY.113 | 0.00057 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | AY.36 | 0.000593 |
N | 25 | G25V | gGc | gTc | 4 | 4 | AY.39 | 0.000099 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | AY.46 | 0.000416 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | AY.47 | 0.000124 |
N | 25 | G25G | ggC | ggT | 4 | 4 | AY.67 | 0.001857 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | AY.69 | 0.000747 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | AY.9.2 | 0.000147 |
N | 25 | G25G | ggC | ggT | 3 | 4 | B.1 | 0.000027 |
N | 25 | G25G | ggC | ggA | 1 | 4 | B.1 | 0.000009 |
N | 25 | G25D | gGc | gAc | 4 | 4 | B.1.1.33 | 0.001684 |
N | 25 | G25G | ggC | ggT | 4 | 4 | B.1.177.7 | 0.000659 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | B.1.177.79 | 0.009368 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | B.1.177.82 | 0.001909 |
N | 25 | G25D | gGc | gAc | 4 | 4 | B.1.258.17 | 0.000416 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | B.1.427 | 0.000202 |
N | 25 | G25C | Ggc | Tgc | 4 | 4 | B.1.617.1 | 0.000516 |
N | 25 | G25V | gGc | gTc | 4 | 4 | P.1.17 | 0.000647 |
N | 25 | G25S | Ggc | Agc | 4 | 4 | Q.3 | 0.00058 |
N | 25 | G25A | gGc | gCc | 3 | 3 | All | 0.000001 |
N | 25 | G25del1 | Ggc | -gc | 3 | 3 | All | 0.000001 |
N | 25 | G25S | Ggc | Agc | 3 | 3 | AY.102 | 0.00008 |
N | 25 | G25D | gGc | gAc | 3 | 3 | AY.102 | 0.00008 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | AY.106 | 0.001005 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | AY.114 | 0.000693 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | AY.121 | 0.000406 |
N | 25 | G25G | ggC | ggT | 3 | 3 | AY.13 | 0.000483 |
N | 25 | G25D | gGc | gAc | 3 | 3 | AY.20 | 0.000117 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | AY.29 | 0.000047 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | AY.34 | 0.000291 |
N | 25 | G25D | gGc | gAc | 3 | 3 | AY.39.1 | 0.000119 |
N | 25 | G25D | gGc | gAc | 3 | 3 | AY.43 | 0.000013 |
N | 25 | G25del | GGC | --- | 3 | 3 | AY.5 | 0.000062 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | AY.59 | 0.001589 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | AY.71 | 0.001425 |
N | 25 | G25G | ggC | ggT | 3 | 3 | AY.75 | 0.000168 |
N | 25 | G25S | Ggc | Agc | 3 | 3 | B.1.1 | 0.000054 |
N | 25 | G25V | gGc | gTc | 3 | 3 | B.1.1 | 0.000054 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | B.1.1.277 | 0.002276 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | B.1.1.50 | 0.002037 |
N | 25 | G25S | Ggc | Agc | 3 | 3 | B.1.177 | 0.00004 |
N | 25 | G25D | gGc | gAc | 3 | 3 | B.1.177 | 0.00004 |
N | 25 | G25G | ggC | ggT | 3 | 3 | B.1.177.51 | 0.013699 |
N | 25 | G25V | gGc | gTc | 3 | 3 | B.1.177.68 | 0.045455 |
N | 25 | G25V | gGc | gTc | 3 | 3 | B.1.221 | 0.000213 |
N | 25 | G25S | Ggc | Agc | 3 | 3 | B.1.221 | 0.000213 |
N | 25 | G25V | gGc | gTc | 3 | 3 | B.1.36 | 0.000438 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | B.1.400 | 0.001287 |
N | 25 | G25S | Ggc | Agc | 3 | 3 | B.1.526 | 0.000071 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | C.16 | 0.003181 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | C.17 | 0.166667 |
N | 25 | G25C | Ggc | Tgc | 3 | 3 | C.36 | 0.002732 |
N | 25 | G25G | ggC | ggT | 3 | 3 | P.1.15 | 0.000697 |
N | 25 | G25S | Ggc | Agc | 2 | 2 | AD.2 | 0.000438 |
N | 25 | G25F | GGc | TTc | 2 | 2 | All | 0 |
N | 25 | G25K | GGC | AAA | 2 | 2 | All | 0 |
N | 25 | G25G | ggC | ggT | 2 | 2 | AY.1 | 0.000791 |
N | 25 | G25S | Ggc | Agc | 2 | 2 | AY.100 | 0.000092 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.100 | 0.000092 |
N | 25 | G25V | gGc | gTc | 2 | 2 | AY.105 | 0.001286 |
N | 25 | G25G | ggC | ggT | 2 | 2 | AY.114 | 0.000462 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.116 | 0.000574 |
N | 25 | G25V | gGc | gTc | 2 | 2 | AY.119 | 0.000071 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.12 | 0.000632 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.120 | 0.000074 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.120 | 0.000074 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.14 | 0.000176 |
N | 25 | G25G | ggC | ggT | 2 | 2 | AY.2 | 0.000712 |
N | 25 | G25S | Ggc | Agc | 2 | 2 | AY.20 | 0.000078 |
N | 25 | G25G | ggC | ggT | 1 | 2 | AY.23 | 0.00007 |
N | 25 | G25G | ggC | ggA | 1 | 2 | AY.23 | 0.00007 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.25 | 0.000012 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.26 | 0.000057 |
N | 25 | G25V | gGc | gTc | 2 | 2 | AY.29 | 0.000032 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.3 | 0.00002 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.3.1 | 0.000171 |
N | 25 | G25del | GGC | --- | 2 | 2 | AY.4 | 0.000003 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.4.2 | 0.000043 |
N | 25 | G25del | GGC | --- | 2 | 2 | AY.43 | 0.000009 |
N | 25 | G25R | Ggc | Cgc | 2 | 2 | AY.43 | 0.000009 |
N | 25 | G25S | Ggc | Agc | 2 | 2 | AY.46 | 0.000208 |
N | 25 | G25G | ggC | ggT | 2 | 2 | AY.46 | 0.000208 |
N | 25 | G25G | ggC | ggT | 2 | 2 | AY.46.6 | 0.000144 |
N | 25 | G25V | gGc | gTc | 2 | 2 | AY.46.6 | 0.000144 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.5 | 0.000041 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.5 | 0.000041 |
N | 25 | G25V | gGc | gTc | 2 | 2 | AY.52 | 0.001629 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.6 | 0.000082 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.61 | 0.00021 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.65 | 0.001066 |
N | 25 | G25D | gGc | gAc | 2 | 2 | AY.67 | 0.000929 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.75.1 | 0.000361 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.9.1 | 0.000167 |
N | 25 | G25S | Ggc | Agc | 2 | 2 | AY.9.2 | 0.000073 |
N | 25 | G25V | gGc | gTc | 2 | 2 | AY.98 | 0.000158 |
N | 25 | G25G | ggC | ggT | 2 | 2 | AY.98.1 | 0.000097 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | AY.98.1 | 0.000097 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B | 0.000256 |
N | 25 | G25A | gGc | gCc | 2 | 2 | B.1 | 0.000018 |
N | 25 | G25V | gGc | gTc | 2 | 2 | B.1 | 0.000018 |
N | 25 | G25D | gGc | gAc | 2 | 2 | B.1.1 | 0.000036 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.1.1 | 0.000653 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.1.28 | 0.000622 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.1.311 | 0.000716 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.1.312 | 0.003824 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.1.37 | 0.000386 |
N | 25 | G25D | gGc | gAc | 2 | 2 | B.1.1.416 | 0.00181 |
N | 25 | G25S | Ggc | Agc | 2 | 2 | B.1.1.519 | 0.000079 |
N | 25 | G25D | gGc | gAc | 2 | 2 | B.1.139 | 0.001466 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.177.60 | 0.000437 |
N | 25 | G25D | gGc | gAc | 2 | 2 | B.1.2 | 0.000018 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.221 | 0.000142 |
N | 25 | G25S | Ggc | Agc | 2 | 2 | B.1.234 | 0.000264 |
N | 25 | G25G | ggC | ggT | 2 | 2 | B.1.243 | 0.000139 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.324 | 0.00321 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.36.24 | 0.012346 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.409 | 0.001563 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.456 | 0.006536 |
N | 25 | G25D | gGc | gAc | 2 | 2 | B.1.460 | 0.035714 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.575 | 0.000607 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | B.1.637 | 0.000146 |
N | 25 | G25V | gGc | gTc | 2 | 2 | C.4 | 0.02 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | P.1.4 | 0.001953 |
N | 25 | G25G | ggC | ggT | 2 | 2 | P.1.7 | 0.000639 |
N | 25 | G25C | Ggc | Tgc | 2 | 2 | P.2 | 0.000373 |
N | 25 | G25G | ggC | ggT | 2 | 2 | Q.8 | 0.00033 |
N | 25 | G25del2 | GGc | --c | 1 | 1 | All | 0 |
N | 25 | G25N | GGc | AAc | 1 | 1 | All | 0 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.100 | 0.000046 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.102 | 0.000027 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.107 | 0.000466 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.108 | 0.001103 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.110 | 0.000113 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.113 | 0.000142 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.116.1 | 0.000311 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.117 | 0.000085 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.118 | 0.000063 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.119 | 0.000035 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.119 | 0.000035 |
N | 25 | G25del | GGC | --- | 1 | 1 | AY.120 | 0.000037 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.120 | 0.000037 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.120.2 | 0.001285 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.121 | 0.000135 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.121 | 0.000135 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.14 | 0.000088 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.16 | 0.00038 |
N | 25 | G25K | GGC | AAA | 1 | 1 | AY.18 | 0.010101 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.2 | 0.000356 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.23 | 0.00007 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.23 | 0.00007 |
N | 25 | G25F | GGc | TTc | 1 | 1 | AY.25 | 0.000006 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.28 | 0.00189 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.29 | 0.000016 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.29.1 | 0.000221 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.29.1 | 0.000221 |
N | 25 | G25del1 | Ggc | -gc | 1 | 1 | AY.3 | 0.00001 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.39 | 0.000025 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.39.1 | 0.00004 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.39.1 | 0.00004 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.39.2 | 0.001541 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.4.2 | 0.000022 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.4.2 | 0.000022 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.4.4 | 0.000409 |
N | 25 | G25del | GGC | --- | 1 | 1 | AY.4.4 | 0.000409 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.42 | 0.00004 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.42 | 0.00004 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.42 | 0.00004 |
N | 25 | G25K | GGC | AAA | 1 | 1 | AY.44 | 0.000006 |
N | 25 | G25del | GGC | --- | 1 | 1 | AY.44 | 0.000006 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.45 | 0.000122 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.45 | 0.000122 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.45 | 0.000122 |
N | 25 | G25del | GGC | --- | 1 | 1 | AY.46 | 0.000104 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.46 | 0.000104 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.46.1 | 0.001027 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.46.5 | 0.000198 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.46.6 | 0.000072 |
N | 25 | G25del | GGC | --- | 1 | 1 | AY.46.6 | 0.000072 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.47 | 0.000031 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.47 | 0.000031 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.5 | 0.000021 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.5 | 0.000021 |
N | 25 | G25del | GGC | --- | 1 | 1 | AY.5.3 | 0.000337 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.5.3 | 0.000337 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.53 | 0.000288 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.54 | 0.000095 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.55 | 0.000917 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.6 | 0.000041 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.6 | 0.000041 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.6 | 0.000041 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.60 | 0.000938 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.61 | 0.000105 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.61 | 0.000105 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.63 | 0.000387 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.64 | 0.000595 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.67 | 0.000464 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.68 | 0.000274 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.68 | 0.000274 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.70 | 0.000209 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.85 | 0.000427 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.85 | 0.000427 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.9 | 0.000068 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.9 | 0.000068 |
N | 25 | G25V | gGc | gTc | 1 | 1 | AY.9.1 | 0.000084 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.9.1 | 0.000084 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.9.2 | 0.000037 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.92 | 0.000287 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | AY.92 | 0.000287 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.95 | 0.000761 |
N | 25 | G25G | ggC | ggT | 1 | 1 | AY.98 | 0.000079 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.98 | 0.000079 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AY.98 | 0.000079 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.98.1 | 0.000048 |
N | 25 | G25D | gGc | gAc | 1 | 1 | AY.99.2 | 0.000092 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | AZ.2 | 0.000821 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B | 0.000128 |
N | 25 | G25del2 | GGc | --c | 1 | 1 | B.1 | 0.000009 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1 | 0.000009 |
N | 25 | G25del | GGC | --- | 1 | 1 | B.1 | 0.000009 |
N | 25 | G25F | GGc | TTc | 1 | 1 | B.1 | 0.000009 |
N | 25 | G25del1 | Ggc | -gc | 1 | 1 | B.1 | 0.000009 |
N | 25 | G25del | GGC | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 25 | G25del | GGC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.170 | 0.001247 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.1.170 | 0.001247 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.174 | 0.003378 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.1.214 | 0.000055 |
N | 25 | G25del | GGC | --- | 1 | 1 | B.1.1.216 | 0.00089 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.220 | 0.001859 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.1.222 | 0.000204 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.251 | 0.007937 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.268 | 0.014925 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.284 | 0.000107 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.1.306 | 0.000438 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1.1.311 | 0.000358 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.1.317 | 0.000412 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.318 | 0.000302 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.348 | 0.000796 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.1.37 | 0.000193 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.375 | 0.011905 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.397 | 0.002252 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.1.416 | 0.000905 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.416 | 0.000905 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.1.433 | 0.001425 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1.1.434 | 0.000349 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.1.459 | 0.015385 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.1.51 | 0.001718 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.1.519 | 0.00004 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.1.519 | 0.00004 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.1.63 | 0.000386 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1.1.70 | 0.000341 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.1.72 | 0.030303 |
N | 25 | G25del1 | Ggc | -gc | 1 | 1 | B.1.110.3 | 0.000718 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.147 | 0.000756 |
N | 25 | G25del | GGC | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.177 | 0.000013 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.177 | 0.000013 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.177.31 | 0.011494 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1.177.63 | 0.002703 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.177.76 | 0.002494 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.221 | 0.000071 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.232 | 0.000537 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.243 | 0.00007 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.258 | 0.000067 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.260 | 0.003344 |
N | 25 | G25del | GGC | --- | 1 | 1 | B.1.264 | 0.012346 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.279 | 0.000514 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.311 | 0.000275 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.332 | 0.003497 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.340 | 0.004292 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.351 | 0.00003 |
N | 25 | G25A | gGc | gCc | 1 | 1 | B.1.351.3 | 0.000876 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.36.8 | 0.001 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.369 | 0.000285 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.378 | 0.006849 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.390 | 0.010638 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.395 | 0.007042 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.408 | 0.00369 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.408 | 0.00369 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1.427 | 0.00005 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.429 | 0.000024 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1.429 | 0.000024 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.438.1 | 0.000107 |
N | 25 | G25del | GGC | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.441 | 0.009615 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.453 | 0.003236 |
N | 25 | G25D | gGc | gAc | 1 | 1 | B.1.466.2 | 0.000391 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.504 | 0.03125 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.561 | 0.000397 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.561 | 0.000397 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.564 | 0.000426 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.568 | 0.001111 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.582 | 0.000491 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.595 | 0.000261 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.609 | 0.000479 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.609 | 0.000479 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.609 | 0.000479 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.617.1 | 0.000129 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1.617.1 | 0.000129 |
N | 25 | G25N | GGc | AAc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 25 | G25R | Ggc | Cgc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | B.1.625 | 0.002353 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | B.1.637 | 0.000073 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.1.637 | 0.000073 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.1.637 | 0.000073 |
N | 25 | G25V | gGc | gTc | 1 | 1 | B.40 | 0.000364 |
N | 25 | G25G | ggC | ggT | 1 | 1 | B.52 | 0.010101 |
N | 25 | G25V | gGc | gTc | 1 | 1 | C.30 | 0.001727 |
N | 25 | G25V | gGc | gTc | 1 | 1 | C.35 | 0.000774 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | C.36 | 0.000911 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | C.37 | 0.000116 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | C.37 | 0.000116 |
N | 25 | G25G | ggC | ggT | 1 | 1 | D.2 | 0.000075 |
N | 25 | G25V | gGc | gTc | 1 | 1 | P.1.14 | 0.000048 |
N | 25 | G25S | Ggc | Agc | 1 | 1 | P.1.15 | 0.000232 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | P.1.17 | 0.000162 |
N | 25 | G25V | gGc | gTc | 1 | 1 | Q.3 | 0.000145 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | Q.8 | 0.000165 |
N | 25 | G25C | Ggc | Tgc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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