CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 247

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N247T247InonsynaCtaTt19181918129012-29014
N247T247SnonsynaCtaGt3072640.85993529012-29014
N247T247SnonsynActTct307430.14006529012-29014
N247T247TsynacTacC2782520.90647529012-29014
N247T247TsynacTacA278210.075539629012-29014
N247T247TsynacTacG27850.017985629012-29014
N247T247NnonsynaCtaAt8585129012-29014
N247T247deldelACT---5757129012-29014
N247T247AnonsynActGct5050129012-29014
N247T247del2delaCTa--870.87529012-29014
N247T247del1delacTac-850.62529012-29014
N247T247del1delaCta-t820.2529012-29014
N247T247del1delACT-AC810.12529012-29014
N247T247del2delACT--N810.12529012-29014
N247T247PnonsynActCct640.66666729012-29014
N247T247PnonsynAcTCcA610.16666729012-29014
N247T247PnonsynAcTCcG610.16666729012-29014
N247T247LnonsynACtCTt530.629012-29014
N247T247LnonsynACTCTG510.229012-29014
N247T247LnonsynACTCTC510.229012-29014
N247T247KnonsynaCTaAA11129012-29014
N247T247YnonsynACTTAC11129012-29014

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N247T247IaCtaTt19181918All0.000367
N247T247SaCtaGt264307All0.00005
N247T247SActTct43307All0.000008
N247T247IaCtaTt305305B.1.6370.022287
N247T247TacTacC252278All0.000048
N247T247TacTacA21278All0.000004
N247T247TacTacG5278All0.000001
N247T247IaCtaTt189189B.1.1.70.000169
N247T247IaCtaTt157157B.1.4430.733645
N247T247IaCtaTt151151AY.40.000235
N247T247SaCtaGt121121B.1.1.70.000108
N247T247TacTacC8489B.1.1.70.000075
N247T247TacTacA489B.1.1.70.000004
N247T247TacTacG189B.1.1.70.000001
N247T247NaCtaAt8585All0.000016
N247T247IaCtaTt7878B.1.5260.001833
N247T247SaCtaGt6565AY.10.025722
N247T247IaCtaTt6565B.10.000595
N247T247IaCtaTt5858AY.140.005105
N247T247delACT---5757All0.000011
N247T247IaCtaTt5757AY.250.000343
N247T247IaCtaTt5656AY.440.000341
N247T247TacTacC5555B.1.1.1210.133495
N247T247IaCtaTt5151B.1.258.110.020214
N247T247AActGct5050All0.00001
N247T247IaCtaTt4949B.1.6040.844828
N247T247SaCtaGt4647AY.40.000072
N247T247SActTct147AY.40.000002
N247T247IaCtaTt4444B.1.6120.116711
N247T247IaCtaTt4444B.400.016029
N247T247IaCtaTt4141AY.1030.000255
N247T247IaCtaTt4141B.1.1.2140.002274
N247T247IaCtaTt3838B.1.617.20.000143
N247T247IaCtaTt3333AY.740.003816
N247T247IaCtaTt3232B.1.10.000581
N247T247IaCtaTt2424P.1.10.007624
N247T247delACT---2323B.1.1.70.000021
N247T247IaCtaTt2222AD.20.004817
N247T247NaCtaAt2020B.1.1.70.000018
N247T247IaCtaTt1616B.1.2340.002111
N247T247IaCtaTt1515B.1.2430.001044
N247T247IaCtaTt1515B.1.4290.000353
N247T247SActTct1414AY.340.001358
N247T247TacTacC1313AY.1030.000081
N247T247IaCtaTt1313AY.260.000368
N247T247IaCtaTt1313AY.30.000129
N247T247IaCtaTt1313AY.9.20.000477
N247T247IaCtaTt1212AY.50.000248
N247T247NaCtaAt1212AY.75.10.002164
N247T247TacTacC711AY.40.000011
N247T247TacTacA411AY.40.000006
N247T247IaCtaTt1111B.1.20.000097
N247T247NaCtaAt1111B.1.5260.000259
N247T247TacTacC710B.10.000064
N247T247TacTacA210B.10.000018
N247T247TacTacG110B.10.000009
N247T247TacTacC1010B.1.1.1890.015129
N247T247IaCtaTt1010B.1.1770.000132
N247T247IaCtaTt99B.1.1600.000281
N247T247TacTacC99B.1.20.000079
N247T247NaCtaAt99B.1.2180.046392
N247T247IaCtaTt99P.1.140.00043
N247T247del2aCTa--78All0.000001
N247T247del1acTac-58All0.000001
N247T247del1aCta-t28All0
N247T247del1ACT-AC18All0
N247T247del2ACT--N18All0
N247T247IaCtaTt88AY.1000.000368
N247T247IaCtaTt88AY.9.10.00067
N247T247SaCtaGt58B.10.000046
N247T247SActTct38B.10.000027
N247T247IaCtaTt88B.1.1.5190.000318
N247T247IaCtaTt88C.350.006192
N247T247SActTct77AY.250.000042
N247T247IaCtaTt77AY.290.00011
N247T247IaCtaTt77AY.390.000173
N247T247IaCtaTt77AY.430.000031
N247T247AActGct77B.1.1.70.000006
N247T247PActCct46All0.000001
N247T247PAcTCcA16All0
N247T247PAcTCcG16All0
N247T247IaCtaTt66AY.1020.000159
N247T247TacTacA36B.1.10.000054
N247T247TacTacC26B.1.10.000036
N247T247TacTacG16B.1.10.000018
N247T247NaCtaAt66P.10.000095
N247T247LACtCTt35All0.000001
N247T247LACTCTC15All0
N247T247LACTCTG15All0
N247T247TacTacC55AY.1020.000133
N247T247AActGct55AY.200.000194
N247T247AActGct55AY.30.00005
N247T247AActGct55AY.40.000008
N247T247TacTacC45AY.430.000018
N247T247TacTacA15AY.430.000004
N247T247TacTacC55AY.440.00003
N247T247IaCtaTt55AY.460.00052
N247T247IaCtaTt55B.1.1.4860.007886
N247T247TacTacC55B.1.4270.000252
N247T247IaCtaTt55B.1.910.010373
N247T247IaCtaTt55P.10.000079
N247T247IaCtaTt44AY.1080.00441
N247T247TacTacC44AY.30.00004
N247T247IaCtaTt44AY.340.000388
N247T247IaCtaTt44AY.420.000161
N247T247IaCtaTt44AY.470.000124
N247T247IaCtaTt44AY.60.000165
N247T247IaCtaTt44AY.640.002381
N247T247AActGct44AY.740.000463
N247T247IaCtaTt44B.1.1.2770.003035
N247T247IaCtaTt44B.1.4250.011976
N247T247IaCtaTt44B.1.4270.000202
N247T247SaCtaGt44B.1.617.20.000015
N247T247IaCtaTt44D.20.0003
N247T247SaCtaGt33AY.1030.000019
N247T247TacTacC33AY.1130.000427
N247T247SaCtaGt33AY.1180.000188
N247T247delACT---33AY.250.000018
N247T247TacTacC33AY.250.000018
N247T247AActGct33AY.250.000018
N247T247NaCtaAt33AY.40.000005
N247T247IaCtaTt33AY.4.50.000322
N247T247SaCtaGt33AY.430.000013
N247T247SActTct33AY.5.10.011278
N247T247AActGct33AY.530.000863
N247T247IaCtaTt33AY.590.001589
N247T247IaCtaTt33AY.610.000314
N247T247IaCtaTt33AY.7.10.000338
N247T247IaCtaTt33B0.000383
N247T247NaCtaAt33B.10.000027
N247T247PAcTCcG13B.1.10.000018
N247T247PAcTCcA13B.1.10.000018
N247T247PActCct13B.1.10.000018
N247T247IaCtaTt33B.1.1.2070.003546
N247T247TacTacC33B.1.1770.00004
N247T247TacTacC33B.1.2210.000213
N247T247IaCtaTt33B.1.2580.0002
N247T247IaCtaTt33B.1.3690.000856
N247T247NaCtaAt33B.1.4270.000151
N247T247IaCtaTt33B.1.5610.001191
N247T247TacTacC33B.1.617.20.000011
N247T247NaCtaAt33B.1.617.20.000011
N247T247TacTacA33B.1.6370.000219
N247T247SActTct33C.370.000348
N247T247AActGct22AP.10.003003
N247T247IaCtaTt22AU.20.004843
N247T247IaCtaTt22AY.1090.001479
N247T247IaCtaTt22AY.1190.000071
N247T247IaCtaTt22AY.160.000759
N247T247AActGct22AY.20.000712
N247T247del2aCTa--22AY.250.000012
N247T247del1acTac-22AY.250.000012
N247T247NaCtaAt22AY.30.00002
N247T247SActTct22AY.330.000134
N247T247IaCtaTt22AY.330.000134
N247T247IaCtaTt22AY.360.000296
N247T247TacTacC22AY.360.000296
N247T247delACT---22AY.40.000003
N247T247TacTacC22AY.4.20.000043
N247T247TacTacC22AY.420.00008
N247T247del1acTac-22AY.430.000009
N247T247delACT---22AY.430.000009
N247T247NaCtaAt22AY.430.000009
N247T247SActTct22AY.440.000012
N247T247IaCtaTt22AY.450.000243
N247T247IaCtaTt22AY.490.00639
N247T247IaCtaTt22AY.540.000191
N247T247delACT---22AY.750.000112
N247T247IaCtaTt22AY.90.000135
N247T247AActGct22AY.9.10.000167
N247T247SaCtaGt22B.1.10.000036
N247T247delACT---22B.1.10.000036
N247T247IaCtaTt22B.1.1.1480.017544
N247T247IaCtaTt22B.1.1.2440.030769
N247T247IaCtaTt22B.1.1.3150.016949
N247T247SActTct22B.1.1.4860.003155
N247T247SaCtaGt22B.1.1.5190.000079
N247T247TacTacC22B.1.1.5190.000079
N247T247LACtCTt12B.1.1.70.000001
N247T247LACTCTG12B.1.1.70.000001
N247T247TacTacC22B.1.1600.000062
N247T247NaCtaAt22B.1.1770.000026
N247T247IaCtaTt22B.1.177.170.001642
N247T247IaCtaTt22B.1.258.170.000208
N247T247IaCtaTt22B.1.360.000292
N247T247AActGct22B.1.4290.000047
N247T247SActTct22B.1.438.10.000215
N247T247SaCtaGt22B.1.4990.002101
N247T247IaCtaTt22B.1.5550.044444
N247T247AActGct22B.1.617.20.000008
N247T247delACT---22B.1.617.20.000008
N247T247IaCtaTt22B.1.90.012346
N247T247IaCtaTt22C.36.30.001134
N247T247delACT---22C.370.000232
N247T247IaCtaTt22P.1.170.000324
N247T247IaCtaTt22P.50.027397
N247T247TacTacC22Q.80.00033
N247T247IaCtaTt11A0.000387
N247T247IaCtaTt11A.2.50.000499
N247T247IaCtaTt11A.30.002096
N247T247AActGct11A.30.002096
N247T247KaCTaAA11All0
N247T247YACTTAC11All0
N247T247SActTct11AY.1000.000046
N247T247SaCtaGt11AY.1020.000027
N247T247NaCtaAt11AY.1030.000006
N247T247delACT---11AY.1030.000006
N247T247IaCtaTt11AY.1050.000643
N247T247delACT---11AY.1080.001103
N247T247del2aCTa--11AY.1110.000183
N247T247delACT---11AY.1110.000183
N247T247IaCtaTt11AY.120.000316
N247T247IaCtaTt11AY.1200.000037
N247T247SActTct11AY.140.000088
N247T247IaCtaTt11AY.200.000039
N247T247TacTacC11AY.200.000039
N247T247SaCtaGt11AY.230.00007
N247T247IaCtaTt11AY.270.000065
N247T247TacTacC11AY.290.000016
N247T247IaCtaTt11AY.3.10.000085
N247T247PActCct11AY.3.10.000085
N247T247IaCtaTt11AY.300.000396
N247T247IaCtaTt11AY.34.10.00051
N247T247TacTacC11AY.390.000025
N247T247IaCtaTt11AY.39.10.00004
N247T247IaCtaTt11AY.39.20.001541
N247T247del2aCTa--11AY.40.000002
N247T247AActGct11AY.4.20.000022
N247T247IaCtaTt11AY.4.2.10.000149
N247T247TacTacA11AY.400.000964
N247T247NaCtaAt11AY.440.000006
N247T247delACT---11AY.440.000006
N247T247TacTacA11AY.470.000031
N247T247delACT---11AY.5.30.000337
N247T247TacTacC11AY.5.40.000277
N247T247TacTacC11AY.540.000095
N247T247NaCtaAt11AY.540.000095
N247T247IaCtaTt11AY.550.000917
N247T247SaCtaGt11AY.560.001605
N247T247IaCtaTt11AY.70.000196
N247T247IaCtaTt11AY.700.000209
N247T247AActGct11AY.750.000056
N247T247IaCtaTt11AY.870.000833
N247T247SaCtaGt11AY.9.20.000037
N247T247delACT---11AY.9.20.000037
N247T247IaCtaTt11AY.980.000079
N247T247NaCtaAt11AY.98.10.000048
N247T247IaCtaTt11AZ.10.000867
N247T247LACtCTt11B.10.000009
N247T247delACT---11B.10.000009
N247T247del1aCta-t11B.10.000009
N247T247del2ACT--N11B.10.000009
N247T247NaCtaAt11B.1.10.000018
N247T247KaCTaAA11B.1.10.000018
N247T247del1ACT-AC11B.1.10.000018
N247T247TacTacG11B.1.1.1370.0125
N247T247IaCtaTt11B.1.1.1570.000913
N247T247IaCtaTt11B.1.1.160.055556
N247T247TacTacC11B.1.1.2140.000055
N247T247SaCtaGt11B.1.1.2200.001859
N247T247IaCtaTt11B.1.1.2910.000742
N247T247IaCtaTt11B.1.1.2940.001266
N247T247IaCtaTt11B.1.1.3060.000438
N247T247IaCtaTt11B.1.1.3290.003846
N247T247del1aCta-t11B.1.1.3530.020833
N247T247IaCtaTt11B.1.1.4300.041667
N247T247IaCtaTt11B.1.1.4640.001473
N247T247IaCtaTt11B.1.1.5230.001563
N247T247YACTTAC11B.1.1.70.000001
N247T247PActCct11B.1.1.70.000001
N247T247del2aCTa--11B.1.1.70.000001
N247T247TacTacC11B.1.1.890.006061
N247T247NaCtaAt11B.1.110.30.000718
N247T247IaCtaTt11B.1.1400.018868
N247T247del2aCTa--11B.1.1770.000013
N247T247IaCtaTt11B.1.177.350.000691
N247T247IaCtaTt11B.1.177.570.000281
N247T247LACTCTC11B.1.177.630.002703
N247T247IaCtaTt11B.1.177.630.002703
N247T247IaCtaTt11B.1.177.70.000165
N247T247IaCtaTt11B.1.177.810.000189
N247T247delACT---11B.1.177.830.001481
N247T247IaCtaTt11B.1.1950.005025
N247T247TacTacC11B.1.2100.002132
N247T247IaCtaTt11B.1.2140.003663
N247T247IaCtaTt11B.1.2200.01087
N247T247AActGct11B.1.2210.000071
N247T247IaCtaTt11B.1.221.10.002907
N247T247TacTacG11B.1.2220.001692
N247T247IaCtaTt11B.1.230.006061
N247T247IaCtaTt11B.1.2360.002053
N247T247IaCtaTt11B.1.2600.003344
N247T247IaCtaTt11B.1.2810.021739
N247T247PActCct11B.1.3330.010526
N247T247IaCtaTt11B.1.3490.000715
N247T247delACT---11B.1.360.000146
N247T247TacTacC11B.1.36.290.000517
N247T247delACT---11B.1.36.290.000517
N247T247IaCtaTt11B.1.36.360.000602
N247T247IaCtaTt11B.1.36.390.002217
N247T247del1acTac-11B.1.3690.000285
N247T247IaCtaTt11B.1.3950.007042
N247T247delACT---11B.1.4150.014286
N247T247SaCtaGt11B.1.4270.00005
N247T247AActGct11B.1.4280.00102
N247T247IaCtaTt11B.1.4330.003195
N247T247delACT---11B.1.4390.005917
N247T247IaCtaTt11B.1.440.008333
N247T247SaCtaGt11B.1.4680.005714
N247T247delACT---11B.1.5250.000113
N247T247TacTacC11B.1.5250.000113
N247T247delACT---11B.1.5330.009615
N247T247IaCtaTt11B.1.5380.008065
N247T247LACtCTt11B.1.5600.00463
N247T247IaCtaTt11B.1.5750.000303
N247T247TacTacC11B.1.575.10.002439
N247T247IaCtaTt11B.1.5890.007576
N247T247del2aCTa--11B.1.5950.000261
N247T247TacTacA11B.1.5960.000087
N247T247IaCtaTt11B.1.6090.000479
N247T247NaCtaAt11B.1.6090.000479
N247T247AActGct11B.1.6090.000479
N247T247SActTct11B.1.617.10.000129
N247T247delACT---11B.1.617.10.000129
N247T247IaCtaTt11B.1.617.10.000129
N247T247SActTct11B.1.6200.000946
N247T247TacTacA11B.1.6210.000089
N247T247delACT---11B.1.6210.000089
N247T247IaCtaTt11B.1.6230.000536
N247T247IaCtaTt11B.610.005747
N247T247NaCtaAt11C.370.000116
N247T247IaCtaTt11C.370.000116
N247T247IaCtaTt11C.37.10.002618
N247T247AActGct11D.20.000075
N247T247TacTacC11D.20.000075
N247T247delACT---11P.10.000016
N247T247TacTacC11P.10.000016
N247T247delACT---11P.1.10.000318
N247T247AActGct11P.1.130.000898
N247T247IaCtaTt11P.20.000187
N247T247NaCtaAt11P.20.000187
N247T247TacTacC11Q.10.000126
N247T247delACT---11Q.20.000613
N247T247TacTacC11Q.40.000455
N247T247SaCtaGt11Q.80.000165