CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 247

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	247	T247I		nonsyn	aCt	aTt	1918	1918	1	29012-29014
N	247	T247S		nonsyn	aCt	aGt	307	264	0.859935	29012-29014
N	247	T247S		nonsyn	Act	Tct	307	43	0.140065	29012-29014
N	247	T247T		syn	acT	acC	278	252	0.906475	29012-29014
N	247	T247T		syn	acT	acA	278	21	0.0755396	29012-29014
N	247	T247T		syn	acT	acG	278	5	0.0179856	29012-29014
N	247	T247N		nonsyn	aCt	aAt	85	85	1	29012-29014
N	247	T247del		del	ACT	---	57	57	1	29012-29014
N	247	T247A		nonsyn	Act	Gct	50	50	1	29012-29014
N	247	T247del2		del	aCT	a--	8	7	0.875	29012-29014
N	247	T247del1		del	acT	ac-	8	5	0.625	29012-29014
N	247	T247del1		del	aCt	a-t	8	2	0.25	29012-29014
N	247	T247del1		del	ACT	-AC	8	1	0.125	29012-29014
N	247	T247del2		del	ACT	--N	8	1	0.125	29012-29014
N	247	T247P		nonsyn	Act	Cct	6	4	0.666667	29012-29014
N	247	T247P		nonsyn	AcT	CcA	6	1	0.166667	29012-29014
N	247	T247P		nonsyn	AcT	CcG	6	1	0.166667	29012-29014
N	247	T247L		nonsyn	ACt	CTt	5	3	0.6	29012-29014
N	247	T247L		nonsyn	ACT	CTG	5	1	0.2	29012-29014
N	247	T247L		nonsyn	ACT	CTC	5	1	0.2	29012-29014
N	247	T247K		nonsyn	aCT	aAA	1	1	1	29012-29014
N	247	T247Y		nonsyn	ACT	TAC	1	1	1	29012-29014

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	247	T247I	aCt	aTt	1918	1918	All	0.000367
N	247	T247S	aCt	aGt	264	307	All	0.00005
N	247	T247S	Act	Tct	43	307	All	0.000008
N	247	T247I	aCt	aTt	305	305	B.1.637	0.022287
N	247	T247T	acT	acC	252	278	All	0.000048
N	247	T247T	acT	acA	21	278	All	0.000004
N	247	T247T	acT	acG	5	278	All	0.000001
N	247	T247I	aCt	aTt	189	189	B.1.1.7	0.000169
N	247	T247I	aCt	aTt	157	157	B.1.443	0.733645
N	247	T247I	aCt	aTt	151	151	AY.4	0.000235
N	247	T247S	aCt	aGt	121	121	B.1.1.7	0.000108
N	247	T247T	acT	acC	84	89	B.1.1.7	0.000075
N	247	T247T	acT	acA	4	89	B.1.1.7	0.000004
N	247	T247T	acT	acG	1	89	B.1.1.7	0.000001
N	247	T247N	aCt	aAt	85	85	All	0.000016
N	247	T247I	aCt	aTt	78	78	B.1.526	0.001833
N	247	T247S	aCt	aGt	65	65	AY.1	0.025722
N	247	T247I	aCt	aTt	65	65	B.1	0.000595
N	247	T247I	aCt	aTt	58	58	AY.14	0.005105
N	247	T247del	ACT	---	57	57	All	0.000011
N	247	T247I	aCt	aTt	57	57	AY.25	0.000343
N	247	T247I	aCt	aTt	56	56	AY.44	0.000341
N	247	T247T	acT	acC	55	55	B.1.1.121	0.133495
N	247	T247I	aCt	aTt	51	51	B.1.258.11	0.020214
N	247	T247A	Act	Gct	50	50	All	0.00001
N	247	T247I	aCt	aTt	49	49	B.1.604	0.844828
N	247	T247S	aCt	aGt	46	47	AY.4	0.000072
N	247	T247S	Act	Tct	1	47	AY.4	0.000002
N	247	T247I	aCt	aTt	44	44	B.1.612	0.116711
N	247	T247I	aCt	aTt	44	44	B.40	0.016029
N	247	T247I	aCt	aTt	41	41	AY.103	0.000255
N	247	T247I	aCt	aTt	41	41	B.1.1.214	0.002274
N	247	T247I	aCt	aTt	38	38	B.1.617.2	0.000143
N	247	T247I	aCt	aTt	33	33	AY.74	0.003816
N	247	T247I	aCt	aTt	32	32	B.1.1	0.000581
N	247	T247I	aCt	aTt	24	24	P.1.1	0.007624
N	247	T247del	ACT	---	23	23	B.1.1.7	0.000021
N	247	T247I	aCt	aTt	22	22	AD.2	0.004817
N	247	T247N	aCt	aAt	20	20	B.1.1.7	0.000018
N	247	T247I	aCt	aTt	16	16	B.1.234	0.002111
N	247	T247I	aCt	aTt	15	15	B.1.243	0.001044
N	247	T247I	aCt	aTt	15	15	B.1.429	0.000353
N	247	T247S	Act	Tct	14	14	AY.34	0.001358
N	247	T247T	acT	acC	13	13	AY.103	0.000081
N	247	T247I	aCt	aTt	13	13	AY.26	0.000368
N	247	T247I	aCt	aTt	13	13	AY.3	0.000129
N	247	T247I	aCt	aTt	13	13	AY.9.2	0.000477
N	247	T247I	aCt	aTt	12	12	AY.5	0.000248
N	247	T247N	aCt	aAt	12	12	AY.75.1	0.002164
N	247	T247T	acT	acC	7	11	AY.4	0.000011
N	247	T247T	acT	acA	4	11	AY.4	0.000006
N	247	T247I	aCt	aTt	11	11	B.1.2	0.000097
N	247	T247N	aCt	aAt	11	11	B.1.526	0.000259
N	247	T247T	acT	acC	7	10	B.1	0.000064
N	247	T247T	acT	acA	2	10	B.1	0.000018
N	247	T247T	acT	acG	1	10	B.1	0.000009
N	247	T247T	acT	acC	10	10	B.1.1.189	0.015129
N	247	T247I	aCt	aTt	10	10	B.1.177	0.000132
N	247	T247I	aCt	aTt	9	9	B.1.160	0.000281
N	247	T247T	acT	acC	9	9	B.1.2	0.000079
N	247	T247N	aCt	aAt	9	9	B.1.218	0.046392
N	247	T247I	aCt	aTt	9	9	P.1.14	0.00043
N	247	T247del2	aCT	a--	7	8	All	0.000001
N	247	T247del1	acT	ac-	5	8	All	0.000001
N	247	T247del1	aCt	a-t	2	8	All	0
N	247	T247del1	ACT	-AC	1	8	All	0
N	247	T247del2	ACT	--N	1	8	All	0
N	247	T247I	aCt	aTt	8	8	AY.100	0.000368
N	247	T247I	aCt	aTt	8	8	AY.9.1	0.00067
N	247	T247S	aCt	aGt	5	8	B.1	0.000046
N	247	T247S	Act	Tct	3	8	B.1	0.000027
N	247	T247I	aCt	aTt	8	8	B.1.1.519	0.000318
N	247	T247I	aCt	aTt	8	8	C.35	0.006192
N	247	T247S	Act	Tct	7	7	AY.25	0.000042
N	247	T247I	aCt	aTt	7	7	AY.29	0.00011
N	247	T247I	aCt	aTt	7	7	AY.39	0.000173
N	247	T247I	aCt	aTt	7	7	AY.43	0.000031
N	247	T247A	Act	Gct	7	7	B.1.1.7	0.000006
N	247	T247P	Act	Cct	4	6	All	0.000001
N	247	T247P	AcT	CcA	1	6	All	0
N	247	T247P	AcT	CcG	1	6	All	0
N	247	T247I	aCt	aTt	6	6	AY.102	0.000159
N	247	T247T	acT	acA	3	6	B.1.1	0.000054
N	247	T247T	acT	acC	2	6	B.1.1	0.000036
N	247	T247T	acT	acG	1	6	B.1.1	0.000018
N	247	T247N	aCt	aAt	6	6	P.1	0.000095
N	247	T247L	ACt	CTt	3	5	All	0.000001
N	247	T247L	ACT	CTC	1	5	All	0
N	247	T247L	ACT	CTG	1	5	All	0
N	247	T247T	acT	acC	5	5	AY.102	0.000133
N	247	T247A	Act	Gct	5	5	AY.20	0.000194
N	247	T247A	Act	Gct	5	5	AY.3	0.00005
N	247	T247A	Act	Gct	5	5	AY.4	0.000008
N	247	T247T	acT	acC	4	5	AY.43	0.000018
N	247	T247T	acT	acA	1	5	AY.43	0.000004
N	247	T247T	acT	acC	5	5	AY.44	0.00003
N	247	T247I	aCt	aTt	5	5	AY.46	0.00052
N	247	T247I	aCt	aTt	5	5	B.1.1.486	0.007886
N	247	T247T	acT	acC	5	5	B.1.427	0.000252
N	247	T247I	aCt	aTt	5	5	B.1.91	0.010373
N	247	T247I	aCt	aTt	5	5	P.1	0.000079
N	247	T247I	aCt	aTt	4	4	AY.108	0.00441
N	247	T247T	acT	acC	4	4	AY.3	0.00004
N	247	T247I	aCt	aTt	4	4	AY.34	0.000388
N	247	T247I	aCt	aTt	4	4	AY.42	0.000161
N	247	T247I	aCt	aTt	4	4	AY.47	0.000124
N	247	T247I	aCt	aTt	4	4	AY.6	0.000165
N	247	T247I	aCt	aTt	4	4	AY.64	0.002381
N	247	T247A	Act	Gct	4	4	AY.74	0.000463
N	247	T247I	aCt	aTt	4	4	B.1.1.277	0.003035
N	247	T247I	aCt	aTt	4	4	B.1.425	0.011976
N	247	T247I	aCt	aTt	4	4	B.1.427	0.000202
N	247	T247S	aCt	aGt	4	4	B.1.617.2	0.000015
N	247	T247I	aCt	aTt	4	4	D.2	0.0003
N	247	T247S	aCt	aGt	3	3	AY.103	0.000019
N	247	T247T	acT	acC	3	3	AY.113	0.000427
N	247	T247S	aCt	aGt	3	3	AY.118	0.000188
N	247	T247del	ACT	---	3	3	AY.25	0.000018
N	247	T247T	acT	acC	3	3	AY.25	0.000018
N	247	T247A	Act	Gct	3	3	AY.25	0.000018
N	247	T247N	aCt	aAt	3	3	AY.4	0.000005
N	247	T247I	aCt	aTt	3	3	AY.4.5	0.000322
N	247	T247S	aCt	aGt	3	3	AY.43	0.000013
N	247	T247S	Act	Tct	3	3	AY.5.1	0.011278
N	247	T247A	Act	Gct	3	3	AY.53	0.000863
N	247	T247I	aCt	aTt	3	3	AY.59	0.001589
N	247	T247I	aCt	aTt	3	3	AY.61	0.000314
N	247	T247I	aCt	aTt	3	3	AY.7.1	0.000338
N	247	T247I	aCt	aTt	3	3	B	0.000383
N	247	T247N	aCt	aAt	3	3	B.1	0.000027
N	247	T247P	AcT	CcG	1	3	B.1.1	0.000018
N	247	T247P	AcT	CcA	1	3	B.1.1	0.000018
N	247	T247P	Act	Cct	1	3	B.1.1	0.000018
N	247	T247I	aCt	aTt	3	3	B.1.1.207	0.003546
N	247	T247T	acT	acC	3	3	B.1.177	0.00004
N	247	T247T	acT	acC	3	3	B.1.221	0.000213
N	247	T247I	aCt	aTt	3	3	B.1.258	0.0002
N	247	T247I	aCt	aTt	3	3	B.1.369	0.000856
N	247	T247N	aCt	aAt	3	3	B.1.427	0.000151
N	247	T247I	aCt	aTt	3	3	B.1.561	0.001191
N	247	T247T	acT	acC	3	3	B.1.617.2	0.000011
N	247	T247N	aCt	aAt	3	3	B.1.617.2	0.000011
N	247	T247T	acT	acA	3	3	B.1.637	0.000219
N	247	T247S	Act	Tct	3	3	C.37	0.000348
N	247	T247A	Act	Gct	2	2	AP.1	0.003003
N	247	T247I	aCt	aTt	2	2	AU.2	0.004843
N	247	T247I	aCt	aTt	2	2	AY.109	0.001479
N	247	T247I	aCt	aTt	2	2	AY.119	0.000071
N	247	T247I	aCt	aTt	2	2	AY.16	0.000759
N	247	T247A	Act	Gct	2	2	AY.2	0.000712
N	247	T247del2	aCT	a--	2	2	AY.25	0.000012
N	247	T247del1	acT	ac-	2	2	AY.25	0.000012
N	247	T247N	aCt	aAt	2	2	AY.3	0.00002
N	247	T247S	Act	Tct	2	2	AY.33	0.000134
N	247	T247I	aCt	aTt	2	2	AY.33	0.000134
N	247	T247I	aCt	aTt	2	2	AY.36	0.000296
N	247	T247T	acT	acC	2	2	AY.36	0.000296
N	247	T247del	ACT	---	2	2	AY.4	0.000003
N	247	T247T	acT	acC	2	2	AY.4.2	0.000043
N	247	T247T	acT	acC	2	2	AY.42	0.00008
N	247	T247del1	acT	ac-	2	2	AY.43	0.000009
N	247	T247del	ACT	---	2	2	AY.43	0.000009
N	247	T247N	aCt	aAt	2	2	AY.43	0.000009
N	247	T247S	Act	Tct	2	2	AY.44	0.000012
N	247	T247I	aCt	aTt	2	2	AY.45	0.000243
N	247	T247I	aCt	aTt	2	2	AY.49	0.00639
N	247	T247I	aCt	aTt	2	2	AY.54	0.000191
N	247	T247del	ACT	---	2	2	AY.75	0.000112
N	247	T247I	aCt	aTt	2	2	AY.9	0.000135
N	247	T247A	Act	Gct	2	2	AY.9.1	0.000167
N	247	T247S	aCt	aGt	2	2	B.1.1	0.000036
N	247	T247del	ACT	---	2	2	B.1.1	0.000036
N	247	T247I	aCt	aTt	2	2	B.1.1.148	0.017544
N	247	T247I	aCt	aTt	2	2	B.1.1.244	0.030769
N	247	T247I	aCt	aTt	2	2	B.1.1.315	0.016949
N	247	T247S	Act	Tct	2	2	B.1.1.486	0.003155
N	247	T247S	aCt	aGt	2	2	B.1.1.519	0.000079
N	247	T247T	acT	acC	2	2	B.1.1.519	0.000079
N	247	T247L	ACt	CTt	1	2	B.1.1.7	0.000001
N	247	T247L	ACT	CTG	1	2	B.1.1.7	0.000001
N	247	T247T	acT	acC	2	2	B.1.160	0.000062
N	247	T247N	aCt	aAt	2	2	B.1.177	0.000026
N	247	T247I	aCt	aTt	2	2	B.1.177.17	0.001642
N	247	T247I	aCt	aTt	2	2	B.1.258.17	0.000208
N	247	T247I	aCt	aTt	2	2	B.1.36	0.000292
N	247	T247A	Act	Gct	2	2	B.1.429	0.000047
N	247	T247S	Act	Tct	2	2	B.1.438.1	0.000215
N	247	T247S	aCt	aGt	2	2	B.1.499	0.002101
N	247	T247I	aCt	aTt	2	2	B.1.555	0.044444
N	247	T247A	Act	Gct	2	2	B.1.617.2	0.000008
N	247	T247del	ACT	---	2	2	B.1.617.2	0.000008
N	247	T247I	aCt	aTt	2	2	B.1.9	0.012346
N	247	T247I	aCt	aTt	2	2	C.36.3	0.001134
N	247	T247del	ACT	---	2	2	C.37	0.000232
N	247	T247I	aCt	aTt	2	2	P.1.17	0.000324
N	247	T247I	aCt	aTt	2	2	P.5	0.027397
N	247	T247T	acT	acC	2	2	Q.8	0.00033
N	247	T247I	aCt	aTt	1	1	A	0.000387
N	247	T247I	aCt	aTt	1	1	A.2.5	0.000499
N	247	T247I	aCt	aTt	1	1	A.3	0.002096
N	247	T247A	Act	Gct	1	1	A.3	0.002096
N	247	T247K	aCT	aAA	1	1	All	0
N	247	T247Y	ACT	TAC	1	1	All	0
N	247	T247S	Act	Tct	1	1	AY.100	0.000046
N	247	T247S	aCt	aGt	1	1	AY.102	0.000027
N	247	T247N	aCt	aAt	1	1	AY.103	0.000006
N	247	T247del	ACT	---	1	1	AY.103	0.000006
N	247	T247I	aCt	aTt	1	1	AY.105	0.000643
N	247	T247del	ACT	---	1	1	AY.108	0.001103
N	247	T247del2	aCT	a--	1	1	AY.111	0.000183
N	247	T247del	ACT	---	1	1	AY.111	0.000183
N	247	T247I	aCt	aTt	1	1	AY.12	0.000316
N	247	T247I	aCt	aTt	1	1	AY.120	0.000037
N	247	T247S	Act	Tct	1	1	AY.14	0.000088
N	247	T247I	aCt	aTt	1	1	AY.20	0.000039
N	247	T247T	acT	acC	1	1	AY.20	0.000039
N	247	T247S	aCt	aGt	1	1	AY.23	0.00007
N	247	T247I	aCt	aTt	1	1	AY.27	0.000065
N	247	T247T	acT	acC	1	1	AY.29	0.000016
N	247	T247I	aCt	aTt	1	1	AY.3.1	0.000085
N	247	T247P	Act	Cct	1	1	AY.3.1	0.000085
N	247	T247I	aCt	aTt	1	1	AY.30	0.000396
N	247	T247I	aCt	aTt	1	1	AY.34.1	0.00051
N	247	T247T	acT	acC	1	1	AY.39	0.000025
N	247	T247I	aCt	aTt	1	1	AY.39.1	0.00004
N	247	T247I	aCt	aTt	1	1	AY.39.2	0.001541
N	247	T247del2	aCT	a--	1	1	AY.4	0.000002
N	247	T247A	Act	Gct	1	1	AY.4.2	0.000022
N	247	T247I	aCt	aTt	1	1	AY.4.2.1	0.000149
N	247	T247T	acT	acA	1	1	AY.40	0.000964
N	247	T247N	aCt	aAt	1	1	AY.44	0.000006
N	247	T247del	ACT	---	1	1	AY.44	0.000006
N	247	T247T	acT	acA	1	1	AY.47	0.000031
N	247	T247del	ACT	---	1	1	AY.5.3	0.000337
N	247	T247T	acT	acC	1	1	AY.5.4	0.000277
N	247	T247T	acT	acC	1	1	AY.54	0.000095
N	247	T247N	aCt	aAt	1	1	AY.54	0.000095
N	247	T247I	aCt	aTt	1	1	AY.55	0.000917
N	247	T247S	aCt	aGt	1	1	AY.56	0.001605
N	247	T247I	aCt	aTt	1	1	AY.7	0.000196
N	247	T247I	aCt	aTt	1	1	AY.70	0.000209
N	247	T247A	Act	Gct	1	1	AY.75	0.000056
N	247	T247I	aCt	aTt	1	1	AY.87	0.000833
N	247	T247S	aCt	aGt	1	1	AY.9.2	0.000037
N	247	T247del	ACT	---	1	1	AY.9.2	0.000037
N	247	T247I	aCt	aTt	1	1	AY.98	0.000079
N	247	T247N	aCt	aAt	1	1	AY.98.1	0.000048
N	247	T247I	aCt	aTt	1	1	AZ.1	0.000867
N	247	T247L	ACt	CTt	1	1	B.1	0.000009
N	247	T247del	ACT	---	1	1	B.1	0.000009
N	247	T247del1	aCt	a-t	1	1	B.1	0.000009
N	247	T247del2	ACT	--N	1	1	B.1	0.000009
N	247	T247N	aCt	aAt	1	1	B.1.1	0.000018
N	247	T247K	aCT	aAA	1	1	B.1.1	0.000018
N	247	T247del1	ACT	-AC	1	1	B.1.1	0.000018
N	247	T247T	acT	acG	1	1	B.1.1.137	0.0125
N	247	T247I	aCt	aTt	1	1	B.1.1.157	0.000913
N	247	T247I	aCt	aTt	1	1	B.1.1.16	0.055556
N	247	T247T	acT	acC	1	1	B.1.1.214	0.000055
N	247	T247S	aCt	aGt	1	1	B.1.1.220	0.001859
N	247	T247I	aCt	aTt	1	1	B.1.1.291	0.000742
N	247	T247I	aCt	aTt	1	1	B.1.1.294	0.001266
N	247	T247I	aCt	aTt	1	1	B.1.1.306	0.000438
N	247	T247I	aCt	aTt	1	1	B.1.1.329	0.003846
N	247	T247del1	aCt	a-t	1	1	B.1.1.353	0.020833
N	247	T247I	aCt	aTt	1	1	B.1.1.430	0.041667
N	247	T247I	aCt	aTt	1	1	B.1.1.464	0.001473
N	247	T247I	aCt	aTt	1	1	B.1.1.523	0.001563
N	247	T247Y	ACT	TAC	1	1	B.1.1.7	0.000001
N	247	T247P	Act	Cct	1	1	B.1.1.7	0.000001
N	247	T247del2	aCT	a--	1	1	B.1.1.7	0.000001
N	247	T247T	acT	acC	1	1	B.1.1.89	0.006061
N	247	T247N	aCt	aAt	1	1	B.1.110.3	0.000718
N	247	T247I	aCt	aTt	1	1	B.1.140	0.018868
N	247	T247del2	aCT	a--	1	1	B.1.177	0.000013
N	247	T247I	aCt	aTt	1	1	B.1.177.35	0.000691
N	247	T247I	aCt	aTt	1	1	B.1.177.57	0.000281
N	247	T247L	ACT	CTC	1	1	B.1.177.63	0.002703
N	247	T247I	aCt	aTt	1	1	B.1.177.63	0.002703
N	247	T247I	aCt	aTt	1	1	B.1.177.7	0.000165
N	247	T247I	aCt	aTt	1	1	B.1.177.81	0.000189
N	247	T247del	ACT	---	1	1	B.1.177.83	0.001481
N	247	T247I	aCt	aTt	1	1	B.1.195	0.005025
N	247	T247T	acT	acC	1	1	B.1.210	0.002132
N	247	T247I	aCt	aTt	1	1	B.1.214	0.003663
N	247	T247I	aCt	aTt	1	1	B.1.220	0.01087
N	247	T247A	Act	Gct	1	1	B.1.221	0.000071
N	247	T247I	aCt	aTt	1	1	B.1.221.1	0.002907
N	247	T247T	acT	acG	1	1	B.1.222	0.001692
N	247	T247I	aCt	aTt	1	1	B.1.23	0.006061
N	247	T247I	aCt	aTt	1	1	B.1.236	0.002053
N	247	T247I	aCt	aTt	1	1	B.1.260	0.003344
N	247	T247I	aCt	aTt	1	1	B.1.281	0.021739
N	247	T247P	Act	Cct	1	1	B.1.333	0.010526
N	247	T247I	aCt	aTt	1	1	B.1.349	0.000715
N	247	T247del	ACT	---	1	1	B.1.36	0.000146
N	247	T247T	acT	acC	1	1	B.1.36.29	0.000517
N	247	T247del	ACT	---	1	1	B.1.36.29	0.000517
N	247	T247I	aCt	aTt	1	1	B.1.36.36	0.000602
N	247	T247I	aCt	aTt	1	1	B.1.36.39	0.002217
N	247	T247del1	acT	ac-	1	1	B.1.369	0.000285
N	247	T247I	aCt	aTt	1	1	B.1.395	0.007042
N	247	T247del	ACT	---	1	1	B.1.415	0.014286
N	247	T247S	aCt	aGt	1	1	B.1.427	0.00005
N	247	T247A	Act	Gct	1	1	B.1.428	0.00102
N	247	T247I	aCt	aTt	1	1	B.1.433	0.003195
N	247	T247del	ACT	---	1	1	B.1.439	0.005917
N	247	T247I	aCt	aTt	1	1	B.1.44	0.008333
N	247	T247S	aCt	aGt	1	1	B.1.468	0.005714
N	247	T247del	ACT	---	1	1	B.1.525	0.000113
N	247	T247T	acT	acC	1	1	B.1.525	0.000113
N	247	T247del	ACT	---	1	1	B.1.533	0.009615
N	247	T247I	aCt	aTt	1	1	B.1.538	0.008065
N	247	T247L	ACt	CTt	1	1	B.1.560	0.00463
N	247	T247I	aCt	aTt	1	1	B.1.575	0.000303
N	247	T247T	acT	acC	1	1	B.1.575.1	0.002439
N	247	T247I	aCt	aTt	1	1	B.1.589	0.007576
N	247	T247del2	aCT	a--	1	1	B.1.595	0.000261
N	247	T247T	acT	acA	1	1	B.1.596	0.000087
N	247	T247I	aCt	aTt	1	1	B.1.609	0.000479
N	247	T247N	aCt	aAt	1	1	B.1.609	0.000479
N	247	T247A	Act	Gct	1	1	B.1.609	0.000479
N	247	T247S	Act	Tct	1	1	B.1.617.1	0.000129
N	247	T247del	ACT	---	1	1	B.1.617.1	0.000129
N	247	T247I	aCt	aTt	1	1	B.1.617.1	0.000129
N	247	T247S	Act	Tct	1	1	B.1.620	0.000946
N	247	T247T	acT	acA	1	1	B.1.621	0.000089
N	247	T247del	ACT	---	1	1	B.1.621	0.000089
N	247	T247I	aCt	aTt	1	1	B.1.623	0.000536
N	247	T247I	aCt	aTt	1	1	B.61	0.005747
N	247	T247N	aCt	aAt	1	1	C.37	0.000116
N	247	T247I	aCt	aTt	1	1	C.37	0.000116
N	247	T247I	aCt	aTt	1	1	C.37.1	0.002618
N	247	T247A	Act	Gct	1	1	D.2	0.000075
N	247	T247T	acT	acC	1	1	D.2	0.000075
N	247	T247del	ACT	---	1	1	P.1	0.000016
N	247	T247T	acT	acC	1	1	P.1	0.000016
N	247	T247del	ACT	---	1	1	P.1.1	0.000318
N	247	T247A	Act	Gct	1	1	P.1.13	0.000898
N	247	T247I	aCt	aTt	1	1	P.2	0.000187
N	247	T247N	aCt	aAt	1	1	P.2	0.000187
N	247	T247T	acT	acC	1	1	Q.1	0.000126
N	247	T247del	ACT	---	1	1	Q.2	0.000613
N	247	T247T	acT	acC	1	1	Q.4	0.000455
N	247	T247S	aCt	aGt	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.