CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 235 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N235S235FnonsyntCttTt114037211403620.99999128976-28978

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N235S235FtCttTt11403621140372All0.218108
N235S235FtCttTt11055641105569B.1.1.70.989726
N235S235FtCttTt78557855Q.10.992294
N235S235FtCttTt68696869Q.30.996229
N235S235FtCttTt60346034Q.80.995053
N235S235FtCttTt33903390B.1.10.061498
N235S235FtCttTt21842184Q.40.993179
N235S235FtCttTt15921592Q.20.976687
N235S235FtCttTt14151417B.10.012961
N235S235FtCttTt12871287B.1.1390.943548
N235S235FtCttTt11791179B.1.5650.955429
N235S235FtCttTt900900Q.71
N235S235FtCttTt151151Q.61
N235S235FtCttTt107107B.1.1700.461207
N235S235FtCttTt8989B.1.20.000784
N235S235FtCttTt8787B.1.1770.001146
N235S235FtCttTt7676B.1.177.730.043035
N235S235FtCttTt7676B.1.617.20.000286
N235S235FtCttTt5959Q.51
N235S235FtCttTt5757P.10.000898
N235S235FtCttTt5656B.1.1.5070.486957
N235S235FtCttTt4951B.1.2210.003481
N235S235FtCttTt4949B.1.1.4090.13881
N235S235FtCttTt4848B.1.5260.001128
N235S235FtCttTt4646B.1.1.2200.085502
N235S235FtCttTt4545XA1
N235S235FtCttTt3939B.1.3510.001159
N235S235FtCttTt3535B.1.177.70.00577
N235S235FtCttTt3333AY.430.000146
N235S235FtCttTt3333B.1.1.3120.063098
N235S235FtCttTt3131B.1.5760.028105
N235S235FtCttTt2828B.1.5960.00244
N235S235FtCttTt2626B0.003323
N235S235FtCttTt2626B.1.4290.000612
N235S235FtCttTt2424B.1.1600.000749
N235S235FtCttTt2424P.1.10.007624
N235S235FtCttTt2323B.1.1.1610.081272
N235S235FtCttTt2222AY.440.000134
N235S235FtCttTt2222B.1.4700.030899
N235S235FtCttTt2222B.1.5330.211538
N235S235FtCttTt2121B.1.1.5280.100962
N235S235FtCttTt1919B.1.1.5190.000755
N235S235FtCttTt1818B.1.3750.014754
N235S235FtCttTt1818B.1.3780.123288
N235S235FtCttTt1414B.1.1.3180.004225
N235S235FtCttTt1414B.1.617.10.001806
N235S235FtCttTt1414P.1.150.003253
N235S235FtCttTt1313AY.40.00002
N235S235FtCttTt1313B.1.5250.001471
N235S235FtCttTt1212C.370.001393
N235S235FtCttTt1111B.1.360.001605
N235S235FtCttTt1111B.1.5800.044715
N235S235FtCttTt10100.555556
N235S235FtCttTt1010AY.1030.000062
N235S235FtCttTt99AY.260.000255
N235S235FtCttTt99AY.30.00009
N235S235FtCttTt99B.1.4270.000454
N235S235FtCttTt99C.36.30.005105
N235S235FtCttTt99P.1.170.001456
N235S235FtCttTt88P.1.120.003872
N235S235FtCttTt77AY.300.00277
N235S235FtCttTt77AY.390.000173
N235S235FtCttTt77B.1.1.100.007804
N235S235FtCttTt77B.1.1.2940.008861
N235S235FtCttTt77B.1.1.4130.048276
N235S235FtCttTt77B.1.2580.000466
N235S235FtCttTt77B.1.3110.001922
N235S235FtCttTt77B.1.5950.001827
N235S235FtCttTt66AY.1180.000376
N235S235FtCttTt66AY.250.000036
N235S235FtCttTt66AY.680.001642
N235S235FtCttTt66B.1.177.810.001136
N235S235FtCttTt66B.1.258.170.000624
N235S235FtCttTt66B.1.4110.022222
N235S235FtCttTt66B.1.6230.003219
N235S235FtCttTt55AY.4.2.10.000745
N235S235FtCttTt55AY.420.000201
N235S235FtCttTt55B.1.1.3890.030303
N235S235FtCttTt55B.1.1.390.002548
N235S235FtCttTt55B.1.1.700.001705
N235S235FtCttTt55B.1.2060.004078
N235S235FtCttTt44A0.001548
N235S235FtCttTt44AY.1020.000106
N235S235FtCttTt44AY.230.000279
N235S235FtCttTt44AY.330.000267
N235S235FtCttTt44AY.360.000593
N235S235FtCttTt44B.1.1.1410.008048
N235S235FtCttTt44B.1.1.280.001245
N235S235FtCttTt44B.1.1.5240.083333
N235S235FtCttTt44B.1.1570.01194
N235S235FtCttTt44B.1.177.310.045977
N235S235FtCttTt44B.1.177.860.000734
N235S235FtCttTt44B.1.2340.000528
N235S235FtCttTt44B.1.2600.013378
N235S235FtCttTt44B.1.5640.001704
N235S235FtCttTt44C.390.075472
N235S235FtCttTt44P.1.10.10.03252
N235S235FtCttTt44R.10.00036
N235S235FtCttTt33AY.290.000047
N235S235FtCttTt33AY.460.000312
N235S235FtCttTt33AY.470.000093
N235S235FtCttTt33AY.540.000286
N235S235FtCttTt33AY.750.000168
N235S235FtCttTt33B.1.1.2160.002671
N235S235FtCttTt33B.1.1.3060.001315
N235S235FtCttTt33B.1.1.5250.016393
N235S235FtCttTt33B.1.177.120.000455
N235S235FtCttTt33B.1.2140.010989
N235S235FtCttTt33B.1.2430.000209
N235S235FtCttTt33B.1.3610.003866
N235S235FtCttTt33B.1.438.10.000322
N235S235FtCttTt33B.1.5750.00091
N235S235FtCttTt33B.1.6090.001438
N235S235FtCttTt33B.1.6200.002838
N235S235FtCttTt33P.1.130.002695
N235S235FtCttTt33P.1.160.001122
N235S235FtCttTt22A.10.000564
N235S235FtCttTt22A.2.50.000998
N235S235FtCttTt22AY.160.000759
N235S235FtCttTt22AY.16.10.00094
N235S235FtCttTt22AY.20.000712
N235S235FtCttTt22AY.50.000041
N235S235FtCttTt22AY.520.001629
N235S235FtCttTt22AY.550.001835
N235S235FtCttTt22AY.75.10.000361
N235S235FtCttTt22AY.98.10.000097
N235S235FtCttTt22AZ.30.00304
N235S235FtCttTt22B.1.1.10.000653
N235S235FtCttTt22B.1.1.1420.035088
N235S235FtCttTt22B.1.1.2290.011494
N235S235FtCttTt22B.1.1.250.001137
N235S235FtCttTt22B.1.1.2990.02439
N235S235FtCttTt22B.1.1.3150.016949
N235S235FtCttTt22B.1.1.3260.003521
N235S235FtCttTt22B.1.1.340.026316
N235S235FtCttTt22B.1.1.370.000386
N235S235FtCttTt22B.1.1.3740.004751
N235S235FtCttTt22B.1.1.4200.002012
N235S235FtCttTt22B.1.1.5230.003125
N235S235FtCttTt22B.1.177.440.001038
N235S235FtCttTt22B.1.214.20.001199
N235S235FtCttTt22B.1.2840.026316
N235S235FtCttTt22B.1.3490.00143
N235S235FtCttTt22B.1.3620.003082
N235S235FtCttTt22B.1.4560.006536
N235S235FtCttTt22B.1.4730.038462
N235S235FtCttTt22B.1.5510.002581
N235S235FtCttTt22B.1.6190.001742
N235S235FtCttTt22B.1.6270.00404
N235S235FtCttTt22B.1.6280.000705
N235S235FtCttTt22B.1.6360.013423
N235S235FtCttTt22B.1.6370.000146
N235S235FtCttTt22C.160.002121
N235S235FtCttTt22P.1.100.000539
N235S235FtCttTt22P.1.140.000096
N235S235FtCttTt11A.2.5.20.001572
N235S235FtCttTt11A.23.10.000704
N235S235FtCttTt11A.270.001656
N235S235FtCttTt11A.70.055556
N235S235FtCttTt11AY.1000.000046
N235S235FtCttTt11AY.1100.000113
N235S235FtCttTt11AY.1160.000287
N235S235FtCttTt11AY.1190.000035
N235S235FtCttTt11AY.1210.000135
N235S235FtCttTt11AY.190.00114
N235S235FtCttTt11AY.200.000039
N235S235FtCttTt11AY.3.10.000085
N235S235FtCttTt11AY.340.000097
N235S235FtCttTt11AY.34.10.00051
N235S235FtCttTt11AY.4.50.000107
N235S235FtCttTt11AY.400.000964
N235S235FtCttTt11AY.450.000122
N235S235FtCttTt11AY.5.40.000277
N235S235FtCttTt11AY.530.000288
N235S235FtCttTt11AY.590.00053
N235S235FtCttTt11AY.610.000105
N235S235FtCttTt11AY.650.000533
N235S235FtCttTt11AY.770.001127
N235S235FtCttTt11AY.840.000437
N235S235FtCttTt11AY.9.20.000037
N235S235FtCttTt11AY.950.000761
N235S235FtCttTt11AY.960.002075
N235S235FtCttTt11AY.980.000079
N235S235FtCttTt11B.1.1.1350.004695
N235S235FtCttTt11B.1.1.1480.008772
N235S235FtCttTt11B.1.1.1530.001095
N235S235FtCttTt11B.1.1.1620.029412
N235S235FtCttTt11B.1.1.1710.003676
N235S235FtCttTt11B.1.1.1740.003378
N235S235FtCttTt11B.1.1.2310.003096
N235S235FtCttTt11B.1.1.2360.006897
N235S235FtCttTt11B.1.1.2370.005405
N235S235FtCttTt11B.1.1.2410.00207
N235S235FtCttTt11B.1.1.2540.011236
N235S235FtCttTt11B.1.1.2650.003155
N235S235FtCttTt11B.1.1.270.00565
N235S235FtCttTt11B.1.1.2750.011236
N235S235FtCttTt11B.1.1.2770.000759
N235S235FtCttTt11B.1.1.2910.000742
N235S235FtCttTt11B.1.1.3010.001179
N235S235FtCttTt11B.1.1.3170.000412
N235S235FtCttTt11B.1.1.3430.020833
N235S235FtCttTt11B.1.1.3560.008547
N235S235FtCttTt11B.1.1.3650.005587
N235S235FtCttTt11B.1.1.3680.003086
N235S235FtCttTt11B.1.1.3700.012658
N235S235FtCttTt11B.1.1.3720.000689
N235S235FtCttTt11B.1.1.40.002976
N235S235FtCttTt11B.1.1.4060.006494
N235S235FtCttTt11B.1.1.4160.000905
N235S235FtCttTt11B.1.1.4370.010417
N235S235FtCttTt11B.1.1.4400.011765
N235S235FtCttTt11B.1.1.4620.008621
N235S235FtCttTt11B.1.1.4640.001473
N235S235FtCttTt11B.1.1.500.000679
N235S235FtCttTt11B.1.1.510.001718
N235S235FtCttTt11B.1.1.5260.003546
N235S235FtCttTt11B.1.1.540.003021
N235S235FtCttTt11B.1.1.550.012987
N235S235FtCttTt11B.1.1.560.017857
N235S235FtCttTt11B.1.1.610.008772
N235S235FtCttTt11B.1.1.630.000386
N235S235FtCttTt11B.1.1.830.00271
N235S235FtCttTt11B.1.1.890.006061
N235S235FtCttTt11B.1.1.990.02381
N235S235FtCttTt11B.1.110.30.000718
N235S235FtCttTt11B.1.1490.003425
N235S235FtCttTt11B.1.160.150.00495
N235S235FtCttTt11B.1.160.70.002079
N235S235FtCttTt11B.1.177.190.001431
N235S235FtCttTt11B.1.177.350.000691
N235S235FtCttTt11B.1.177.40.000211
N235S235FtCttTt11B.1.177.410.0025
N235S235FtCttTt11B.1.177.510.004566
N235S235FtCttTt11B.1.177.520.001757
N235S235FtCttTt11B.1.177.530.002392
N235S235FtCttTt11B.1.177.540.000606
N235S235FtCttTt11B.1.177.580.001332
N235S235FtCttTt11B.1.177.60.000977
N235S235FtCttTt11B.1.177.670.007634
N235S235FtCttTt11B.1.177.690.001484
N235S235FtCttTt11B.1.177.770.000726
N235S235FtCttTt11B.1.177.80.000752
N235S235FtCttTt11B.1.2100.002132
N235S235FtCttTt11B.1.2180.005155
N235S235FtCttTt11B.1.2370.004975
N235S235FtCttTt11B.1.258.140.00098
N235S235FtCttTt11B.1.3010.005917
N235S235FtCttTt11B.1.351.20.000303
N235S235FtCttTt11B.1.36.100.004785
N235S235FtCttTt11B.1.36.180.00042
N235S235FtCttTt11B.1.36.20.010753
N235S235FtCttTt11B.1.36.310.001751
N235S235FtCttTt11B.1.36.330.007576
N235S235FtCttTt11B.1.36.380.001642
N235S235FtCttTt11B.1.3670.000792
N235S235FtCttTt11B.1.3690.000285
N235S235FtCttTt11B.1.3890.001002
N235S235FtCttTt11B.1.3960.000706
N235S235FtCttTt11B.1.3970.004854
N235S235FtCttTt11B.1.3980.002976
N235S235FtCttTt11B.1.415.10.007576
N235S235FtCttTt11B.1.4160.001269
N235S235FtCttTt11B.1.416.10.001563
N235S235FtCttTt11B.1.4320.011236
N235S235FtCttTt11B.1.4330.003195
N235S235FtCttTt11B.1.4620.007246
N235S235FtCttTt11B.1.466.10.007194
N235S235FtCttTt11B.1.4850.014925
N235S235FtCttTt11B.1.5050.004386
N235S235FtCttTt11B.1.5170.000427
N235S235FtCttTt11B.1.5240.001406
N235S235FtCttTt11B.1.5300.007143
N235S235FtCttTt11B.1.5610.000397
N235S235FtCttTt11B.1.5990.00365
N235S235FtCttTt11B.1.617.30.002985
N235S235FtCttTt11B.1.6210.000089
N235S235FtCttTt11B.1.6250.002353
N235S235FtCttTt11B.1.6340.003425
N235S235FtCttTt11B.1.940.027027
N235S235FtCttTt11B.110.005128
N235S235FtCttTt11B.40.002208
N235S235FtCttTt11C.170.055556
N235S235FtCttTt11C.37.10.002618
N235S235FtCttTt11C.380.008065
N235S235FtCttTt11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.