CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 234 & Codon = atC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N234M234InonsynatGatC157953383750.24295228973-28975

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N234M234IatGatC38375157953All0.00734
N234M234IatGatC2923329464B.1.1600.911708
N234M234IatGatC15446B.1.258.170.000104
N234M234IatGatC1832555B.10.001676
N234M234IatGatC112477B.1.5610.004367
N234M234IatGatC81386B.1.10.000145
N234M234IatGatC13271356AY.250.007982
N234M234IatGatC10471048B.1.160.160.973048
N234M234IatGatC775775B.1.160.80.998711
N234M234IatGatC588588B.1.160.171
N234M234IatGatC480480B.1.160.70.997921
N234M234IatGatC9466B.1.1.70.000008
N234M234IatGatC465465B.1.160.140.985169
N234M234IatGatC24425B.1.6090.011505
N234M234IatGatC407407B.1.160.260.985472
N234M234IatGatC7407B.1.5230.017157
N234M234IatGatC334334B.1.160.280.976608
N234M234IatGatC2316AY.440.000012
N234M234IatGatC38278AY.40.000059
N234M234IatGatC5255B.1.2580.000333
N234M234IatGatC233233B.1.160.290.983122
N234M234IatGatC225225B.1.160.240.995575
N234M234IatGatC225225B.1.160.330.995575
N234M234IatGatC4224B.1.20.000035
N234M234IatGatC206206B.1.160.230.995169
N234M234IatGatC198198B.1.160.300.589286
N234M234IatGatC195196B.1.160.150.965347
N234M234IatGatC11193B.1.617.20.000041
N234M234IatGatC186186B.1.160.320.798283
N234M234IatGatC174174B.1.160.110.994286
N234M234IatGatC154154B.1.160.120.987179
N234M234IatGatC146146B.1.160.220.986486
N234M234IatGatC4139B.1.360.000584
N234M234IatGatC138138B.1.160.90.992806
N234M234IatGatC135135B.1.160.180.985401
N234M234IatGatC124124B.1.160.311
N234M234IatGatC121121AB.10.991803
N234M234IatGatC114114B.1.160.100.919355
N234M234IatGatC9090B.1.160.251
N234M234IatGatC1885P.10.000284
N234M234IatGatC8182B.1.160.200.723214
N234M234IatGatC170B.1.1.500.000679
N234M234IatGatC5768B.1.1770.000751
N234M234IatGatC1166AY.260.000311
N234M234IatGatC5366B.1.2210.003765
N234M234IatGatC6565B.1.160.270.984848
N234M234IatGatC156AY.1030.000006
N234M234IatGatC4549B.1.1.390.022936
N234M234IatGatC4949B.1.160.211
N234M234IatGatC149B.1.4600.017857
N234M234IatGatC146AY.30.00001
N234M234IatGatC937B0.00115
N234M234IatGatC3636B.1.160.131
N234M234IatGatC1235B.1.177.730.006795
N234M234IatGatC530AY.430.000022
N234M234IatGatC3030B.1.177.310.344828
N234M234IatGatC3030B.1.177.440.015568
N234M234IatGatC2828B.1.160.191
N234M234IatGatC2626B.1.1.4450.962963
N234M234IatGatC2325B.1.1.2650.072555
N234M234IatGatC2121AY.640.0125
N234M234IatGatC121B.1.177.70.000165
N234M234IatGatC2021B.1.258.110.007927
N234M234IatGatC121B.1.5820.000491
N234M234IatGatC118B.1.5670.003333
N234M234IatGatC114AY.1020.000027
N234M234IatGatC112B.1.3510.00003
N234M234IatGatC312B.1.36.290.001552
N234M234IatGatC311AY.230.000209
N234M234IatGatC111AY.610.000105
N234M234IatGatC211B.1.1.2940.002532
N234M234IatGatC1111B.1.177.430.016248
N234M234IatGatC1010R.10.0009
N234M234IatGatC39AY.390.000074
N234M234IatGatC19B.1.214.20.0006
N234M234IatGatC69B.1.5090.005195
N234M234IatGatC18AY.160.00038
N234M234IatGatC18AY.470.000031
N234M234IatGatC18B.1.1.2160.00089
N234M234IatGatC48B.1.3750.003279
N234M234IatGatC17A0.000387
N234M234IatGatC16AY.330.000067
N234M234IatGatC26B.1.4090.001563
N234M234IatGatC55AY.1160.001434
N234M234IatGatC25P.1.150.000465
N234M234IatGatC44B.1.2600.013378
N234M234IatGatC44B.1.4650.015209
N234M234IatGatC14B.1.4680.005714
N234M234IatGatC44B.1.4730.076923
N234M234IatGatC23AY.1190.000071
N234M234IatGatC13AY.4.20.000022
N234M234IatGatC13B.1.1570.002985
N234M234IatGatC22AY.1170.000169
N234M234IatGatC22AY.70.000392
N234M234IatGatC22B.1.1.1530.002191
N234M234IatGatC12B.1.1.370.000193
N234M234IatGatC22B.1.2220.003384
N234M234IatGatC22B.1.36.220.002415
N234M234IatGatC22B.1.416.10.003125
N234M234IatGatC12B.1.4280.00102
N234M234IatGatC12B.1.4530.003236
N234M234IatGatC12B.1.5990.00365
N234M234IatGatC22B.230.005848
N234M234IatGatC12C.160.00106
N234M234IatGatC11A.190.009434
N234M234IatGatC11AN.10.02
N234M234IatGatC11AY.690.000187
N234M234IatGatC11AY.7.20.000559
N234M234IatGatC11B.1.1.1760.000439
N234M234IatGatC11B.1.1.2360.006897
N234M234IatGatC11B.1.1.3020.002075
N234M234IatGatC11B.1.1.3810.04
N234M234IatGatC11B.1.1.700.000341
N234M234IatGatC11B.1.1040.00369
N234M234IatGatC11B.1.1240.007812
N234M234IatGatC11B.1.177.200.001517
N234M234IatGatC11B.1.177.210.000076
N234M234IatGatC11B.1.177.230.003236
N234M234IatGatC11B.1.177.320.00135
N234M234IatGatC11B.1.177.80.000752
N234M234IatGatC11B.1.177.850.005435
N234M234IatGatC11B.1.3260.007576
N234M234IatGatC11B.1.36.250.002208
N234M234IatGatC11B.1.36.350.002604
N234M234IatGatC11B.1.36.80.001
N234M234IatGatC11B.1.3780.006849
N234M234IatGatC11B.1.4060.006061
N234M234IatGatC11B.1.4740.001901
N234M234IatGatC11B.400.000364
N234M234IatGatC11C.180.002591

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.