CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 234 & Codon = atA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	234	M234I		nonsyn	atG	atA	157953	46241	0.292752	28973-28975

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	234	M234I	atG	atA	46241	157953	All	0.008844
N	234	M234I	atG	atA	6	29464	B.1.160	0.000187
N	234	M234I	atG	atA	28845	28849	B.1.526	0.677988
N	234	M234I	atG	atA	1	17726	B.1.429	0.000024
N	234	M234I	atG	atA	13558	13559	B.1.637	0.99072
N	234	M234I	atG	atA	1061	2555	B.1	0.009718
N	234	M234I	atG	atA	4	2477	B.1.561	0.001588
N	234	M234I	atG	atA	1720	1729	B.1.623	0.922747
N	234	M234I	atG	atA	26	1386	B.1.1	0.000472
N	234	M234I	atG	atA	8	1356	AY.25	0.000048
N	234	M234I	atG	atA	36	466	B.1.1.7	0.000032
N	234	M234I	atG	atA	5	425	B.1.609	0.002397
N	234	M234I	atG	atA	10	413	B.1.625	0.023529
N	234	M234I	atG	atA	281	316	AY.44	0.00171
N	234	M234I	atG	atA	18	278	AY.4	0.000028
N	234	M234I	atG	atA	117	255	B.1.258	0.007786
N	234	M234I	atG	atA	4	235	B.1.618	0.016129
N	234	M234I	atG	atA	31	224	B.1.2	0.000273
N	234	M234I	atG	atA	3	215	B.1.427	0.000151
N	234	M234I	atG	atA	56	193	B.1.617.2	0.000211
N	234	M234I	atG	atA	117	139	B.1.36	0.01707
N	234	M234I	atG	atA	2	124	B.1.596	0.000174
N	234	M234I	atG	atA	7	85	P.1	0.00011
N	234	M234I	atG	atA	2	66	B.1.221	0.000142
N	234	M234I	atG	atA	2	57	B.1.1.318	0.000604
N	234	M234I	atG	atA	1	57	B.1.595	0.000261
N	234	M234I	atG	atA	2	56	AY.103	0.000012
N	234	M234I	atG	atA	39	39	B.1.1.351	0.108939
N	234	M234I	atG	atA	14	37	B	0.001789
N	234	M234I	atG	atA	3	37	B.1.1.519	0.000119
N	234	M234I	atG	atA	18	35	B.1.177.73	0.010193
N	234	M234I	atG	atA	1	34	B.1.585	0.027778
N	234	M234I	atG	atA	12	33	B.1.111	0.014101
N	234	M234I	atG	atA	33	33	B.1.346	0.04325
N	234	M234I	atG	atA	1	30	AY.43	0.000004
N	234	M234I	atG	atA	28	28	B.1.324	0.044944
N	234	M234I	atG	atA	5	27	B.1.311	0.001373
N	234	M234I	atG	atA	1	25	B.1.1.265	0.003155
N	234	M234I	atG	atA	15	22	B.1.1.416	0.013575
N	234	M234I	atG	atA	7	22	B.1.367	0.005547
N	234	M234I	atG	atA	18	21	B.1.177.7	0.002967
N	234	M234I	atG	atA	17	18	AY.42	0.000684
N	234	M234I	atG	atA	3	18	B.1.567	0.01
N	234	M234I	atG	atA	2	14	AY.102	0.000053
N	234	M234I	atG	atA	1	13	AY.75	0.000056
N	234	M234I	atG	atA	13	13	B.1.574	0.027957
N	234	M234I	atG	atA	1	12	B.1.351	0.00003
N	234	M234I	atG	atA	1	12	B.1.36.29	0.000517
N	234	M234I	atG	atA	1	11	AY.23	0.00007
N	234	M234I	atG	atA	3	11	AY.5	0.000062
N	234	M234I	atG	atA	1	11	AY.61	0.000105
N	234	M234I	atG	atA	7	9	B.1.214.2	0.004197
N	234	M234I	atG	atA	2	9	B.1.356	0.003454
N	234	M234I	atG	atA	5	8	AY.16	0.001898
N	234	M234I	atG	atA	3	7	A	0.001161
N	234	M234I	atG	atA	7	7	B.1.636	0.04698
N	234	M234I	atG	atA	2	7	P.1.17	0.000324
N	234	M234I	atG	atA	5	6	AY.105	0.003215
N	234	M234I	atG	atA	1	5	AY.45	0.000122
N	234	M234I	atG	atA	1	4	AY.95	0.000761
N	234	M234I	atG	atA	1	4	B.1.525	0.000113
N	234	M234I	atG	atA	4	4	B.1.575	0.001214
N	234	M234I	atG	atA	1	4	D.2	0.000075
N	234	M234I	atG	atA	1	4	P.1.1	0.000318
N	234	M234I	atG	atA	2	3	AY.62	0.000871
N	234	M234I	atG	atA	1	3	B.1.1.372	0.000689
N	234	M234I	atG	atA	1	3	B.1.139	0.000733
N	234	M234I	atG	atA	1	3	B.1.369	0.000285
N	234	M234I	atG	atA	3	3	B.1.389	0.003006
N	234	M234I	atG	atA	3	3	B.1.530	0.021429
N	234	M234I	atG	atA	2	2	B.1.243.1	0.044444
N	234	M234I	atG	atA	2	2	B.1.336	0.004878
N	234	M234I	atG	atA	2	2	B.1.36.17	0.000988
N	234	M234I	atG	atA	2	2	B.1.413	0.008511
N	234	M234I	atG	atA	1	2	B.1.628	0.000352
N	234	M234I	atG	atA	1	1	AE.8	0.000489
N	234	M234I	atG	atA	1	1	AY.2	0.000356
N	234	M234I	atG	atA	1	1	AY.30	0.000396
N	234	M234I	atG	atA	1	1	AY.46	0.000104
N	234	M234I	atG	atA	1	1	AY.98.1	0.000048
N	234	M234I	atG	atA	1	1	B.1.1.406	0.006494
N	234	M234I	atG	atA	1	1	B.1.1.434	0.000349
N	234	M234I	atG	atA	1	1	B.1.1.507	0.008696
N	234	M234I	atG	atA	1	1	B.1.258.14	0.00098
N	234	M234I	atG	atA	1	1	B.1.280	0.007143
N	234	M234I	atG	atA	1	1	B.1.332	0.003497
N	234	M234I	atG	atA	1	1	B.1.338	0.008621
N	234	M234I	atG	atA	1	1	B.1.350	0.002933
N	234	M234I	atG	atA	1	1	B.1.399	0.001934
N	234	M234I	atG	atA	1	1	B.1.506	0.02381
N	234	M234I	atG	atA	1	1	B.1.576	0.000907
N	234	M234I	atG	atA	1	1	B.1.638	0.052632
N	234	M234I	atG	atA	1	1	B.6.8	0.008264
N	234	M234I	atG	atA	1	1	C.36.1	0.004149
N	234	M234I	atG	atA	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.