CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 228 & Codon = Cac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N228N228HnonsynAacCac3131128955-28957

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N228N228HAacCac3131All0.000006
N228N228HAacCac55AY.46.60.000361
N228N228HAacCac44AY.4.20.000087
N228N228HAacCac44B.1.258.170.000416
N228N228HAacCac33AY.250.000018
N228N228HAacCac33AY.40.000005
N228N228HAacCac22B.1.2430.000139
N228N228HAacCac22B.1.617.20.000008
N228N228HAacCac11AY.1180.000063
N228N228HAacCac11AY.16.10.00047
N228N228HAacCac11AY.260.000028
N228N228HAacCac11AY.400.000964
N228N228HAacCac11B.1.10.000018
N228N228HAacCac11B.1.1.2070.001182
N228N228HAacCac11B.1.1.370.000193
N228N228HAacCac11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.