CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 228 | N228N | syn | aaC | aaT | 8320 | 8320 | 1 | 28955-28957 | |
N | 228 | N228K | nonsyn | aaC | aaA | 336 | 332 | 0.988095 | 28955-28957 | |
N | 228 | N228K | nonsyn | aaC | aaG | 336 | 4 | 0.0119048 | 28955-28957 | |
N | 228 | N228S | nonsyn | aAc | aGc | 44 | 44 | 1 | 28955-28957 | |
N | 228 | N228H | nonsyn | Aac | Cac | 31 | 31 | 1 | 28955-28957 | |
N | 228 | N228del | del | AAC | --- | 31 | 31 | 1 | 28955-28957 | |
N | 228 | N228D | nonsyn | Aac | Gac | 22 | 22 | 1 | 28955-28957 | |
N | 228 | N228Y | nonsyn | Aac | Tac | 20 | 20 | 1 | 28955-28957 | |
N | 228 | N228T | nonsyn | aAc | aCc | 15 | 14 | 0.933333 | 28955-28957 | |
N | 228 | N228T | nonsyn | aAC | aCT | 15 | 1 | 0.0666667 | 28955-28957 | |
N | 228 | N228I | nonsyn | aAc | aTc | 5 | 5 | 1 | 28955-28957 | |
N | 228 | N228E | nonsyn | AaC | GaA | 5 | 4 | 0.8 | 28955-28957 | |
N | 228 | N228E | nonsyn | AaC | GaG | 5 | 1 | 0.2 | 28955-28957 | |
N | 228 | N228del1 | del | aaC | aa- | 3 | 2 | 0.666667 | 28955-28957 | |
N | 228 | N228G | nonsyn | AAc | GGc | 3 | 1 | 0.333333 | 28955-28957 | |
N | 228 | N228X | nonsyn | AaC | TaA | 3 | 1 | 0.333333 | 28955-28957 | |
N | 228 | N228G | nonsyn | AAC | GGG | 3 | 1 | 0.333333 | 28955-28957 | |
N | 228 | N228X | nonsyn | AAC | TGA | 3 | 1 | 0.333333 | 28955-28957 | |
N | 228 | N228G | nonsyn | AAC | GGA | 3 | 1 | 0.333333 | 28955-28957 | |
N | 228 | N228del1 | del | Aac | -ac | 3 | 1 | 0.333333 | 28955-28957 | |
N | 228 | N228X | nonsyn | AaC | TaG | 3 | 1 | 0.333333 | 28955-28957 | |
N | 228 | N228R | nonsyn | aAC | aGG | 2 | 1 | 0.5 | 28955-28957 | |
N | 228 | N228R | nonsyn | aAC | aGA | 2 | 1 | 0.5 | 28955-28957 | |
N | 228 | N228V | nonsyn | AAc | GTc | 1 | 1 | 1 | 28955-28957 | |
N | 228 | N228W | nonsyn | AAC | TGG | 1 | 1 | 1 | 28955-28957 | |
N | 228 | N228M | nonsyn | aAC | aTG | 1 | 1 | 1 | 28955-28957 | |
N | 228 | N228C | nonsyn | AAc | TGc | 1 | 1 | 1 | 28955-28957 | |
N | 228 | N228del2 | del | aAC | a-- | 1 | 1 | 1 | 28955-28957 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 228 | N228N | aaC | aaT | 8320 | 8320 | All | 0.001591 |
N | 228 | N228N | aaC | aaT | 1556 | 1556 | B.1.619.1 | 0.998076 |
N | 228 | N228N | aaC | aaT | 1289 | 1289 | B.1.1.7 | 0.001154 |
N | 228 | N228N | aaC | aaT | 648 | 648 | AY.4 | 0.001009 |
N | 228 | N228N | aaC | aaT | 618 | 618 | P.1 | 0.009736 |
N | 228 | N228N | aaC | aaT | 427 | 427 | B.1.617.2 | 0.001608 |
N | 228 | N228K | aaC | aaA | 332 | 336 | All | 0.000063 |
N | 228 | N228K | aaC | aaG | 4 | 336 | All | 0.000001 |
N | 228 | N228N | aaC | aaT | 294 | 294 | B.1.631 | 0.989899 |
N | 228 | N228K | aaC | aaA | 274 | 274 | AY.44 | 0.001668 |
N | 228 | N228N | aaC | aaT | 247 | 247 | AY.94 | 0.10934 |
N | 228 | N228N | aaC | aaT | 239 | 239 | AY.43 | 0.001059 |
N | 228 | N228N | aaC | aaT | 218 | 218 | B.1.429 | 0.005129 |
N | 228 | N228N | aaC | aaT | 171 | 171 | AY.39.1 | 0.006774 |
N | 228 | N228N | aaC | aaT | 131 | 131 | AY.25 | 0.000788 |
N | 228 | N228N | aaC | aaT | 130 | 130 | B.1.160 | 0.004054 |
N | 228 | N228N | aaC | aaT | 120 | 120 | B.1.1.420 | 0.120724 |
N | 228 | N228N | aaC | aaT | 110 | 110 | AY.103 | 0.000683 |
N | 228 | N228N | aaC | aaT | 105 | 105 | AY.20 | 0.004081 |
N | 228 | N228N | aaC | aaT | 103 | 103 | B.1.2 | 0.000907 |
N | 228 | N228N | aaC | aaT | 101 | 101 | B.1.243 | 0.007028 |
N | 228 | N228N | aaC | aaT | 95 | 95 | AY.33 | 0.006344 |
N | 228 | N228N | aaC | aaT | 59 | 59 | B.1 | 0.00054 |
N | 228 | N228N | aaC | aaT | 58 | 58 | B.1.1.214 | 0.003217 |
N | 228 | N228N | aaC | aaT | 57 | 57 | B.1.1 | 0.001034 |
N | 228 | N228N | aaC | aaT | 54 | 54 | AY.44 | 0.000329 |
N | 228 | N228N | aaC | aaT | 54 | 54 | B.1.348 | 0.981818 |
N | 228 | N228N | aaC | aaT | 48 | 48 | B.1.177 | 0.000632 |
N | 228 | N228S | aAc | aGc | 44 | 44 | All | 0.000008 |
N | 228 | N228N | aaC | aaT | 42 | 42 | B.1.1.519 | 0.001668 |
N | 228 | N228N | aaC | aaT | 37 | 37 | AY.100 | 0.001702 |
N | 228 | N228N | aaC | aaT | 36 | 36 | B.1.526 | 0.000846 |
N | 228 | N228N | aaC | aaT | 34 | 34 | B.1.369 | 0.009698 |
N | 228 | N228N | aaC | aaT | 32 | 32 | AY.39 | 0.000791 |
N | 228 | N228N | aaC | aaT | 32 | 32 | AY.54 | 0.003051 |
N | 228 | N228H | Aac | Cac | 31 | 31 | All | 0.000006 |
N | 228 | N228del | AAC | --- | 31 | 31 | All | 0.000006 |
N | 228 | N228N | aaC | aaT | 31 | 31 | AY.5 | 0.00064 |
N | 228 | N228N | aaC | aaT | 30 | 30 | AY.42 | 0.001207 |
N | 228 | N228N | aaC | aaT | 29 | 29 | B.1.351.2 | 0.008775 |
N | 228 | N228N | aaC | aaT | 27 | 27 | AY.37 | 0.008534 |
N | 228 | N228N | aaC | aaT | 26 | 26 | AY.118 | 0.001629 |
N | 228 | N228N | aaC | aaT | 25 | 25 | AY.27 | 0.001618 |
N | 228 | N228N | aaC | aaT | 24 | 24 | P.1.12 | 0.011617 |
N | 228 | N228D | Aac | Gac | 22 | 22 | All | 0.000004 |
N | 228 | N228N | aaC | aaT | 21 | 21 | B.1.258 | 0.001397 |
N | 228 | N228N | aaC | aaT | 21 | 21 | B.1.619 | 0.018293 |
N | 228 | N228Y | Aac | Tac | 20 | 20 | All | 0.000004 |
N | 228 | N228N | aaC | aaT | 20 | 20 | AY.3 | 0.000199 |
N | 228 | N228N | aaC | aaT | 20 | 20 | B.1.1.28 | 0.006225 |
N | 228 | N228N | aaC | aaT | 19 | 19 | AU.2 | 0.046005 |
N | 228 | N228N | aaC | aaT | 19 | 19 | AY.102 | 0.000504 |
N | 228 | N228N | aaC | aaT | 19 | 19 | B.1.177.4 | 0.00401 |
N | 228 | N228N | aaC | aaT | 19 | 19 | B.1.351 | 0.000565 |
N | 228 | N228N | aaC | aaT | 18 | 18 | B.1.177.86 | 0.003302 |
N | 228 | N228N | aaC | aaT | 18 | 18 | B.1.258.17 | 0.001871 |
N | 228 | N228N | aaC | aaT | 18 | 18 | C.4 | 0.18 |
N | 228 | N228N | aaC | aaT | 16 | 16 | AY.26 | 0.000453 |
N | 228 | N228N | aaC | aaT | 16 | 16 | AY.29 | 0.000252 |
N | 228 | N228T | aAc | aCc | 14 | 15 | All | 0.000003 |
N | 228 | N228T | aAC | aCT | 1 | 15 | All | 0 |
N | 228 | N228N | aaC | aaT | 15 | 15 | AY.9.2 | 0.000551 |
N | 228 | N228N | aaC | aaT | 15 | 15 | B.1.427 | 0.000757 |
N | 228 | N228N | aaC | aaT | 14 | 14 | AY.120 | 0.000521 |
N | 228 | N228N | aaC | aaT | 14 | 14 | AY.120.2.1 | 0.006976 |
N | 228 | N228N | aaC | aaT | 14 | 14 | AY.4.5 | 0.001505 |
N | 228 | N228N | aaC | aaT | 14 | 14 | AY.51 | 0.012727 |
N | 228 | N228N | aaC | aaT | 14 | 14 | B.1.1.1 | 0.004574 |
N | 228 | N228N | aaC | aaT | 14 | 14 | B.1.1.265 | 0.044164 |
N | 228 | N228N | aaC | aaT | 14 | 14 | B.1.240 | 0.003018 |
N | 228 | N228N | aaC | aaT | 14 | 14 | B.1.36 | 0.002043 |
N | 228 | N228N | aaC | aaT | 13 | 13 | B.1.438.1 | 0.001394 |
N | 228 | N228N | aaC | aaT | 13 | 13 | B.1.525 | 0.001471 |
N | 228 | N228N | aaC | aaT | 12 | 12 | D.2 | 0.0009 |
N | 228 | N228N | aaC | aaT | 11 | 11 | AY.119 | 0.000388 |
N | 228 | N228K | aaC | aaA | 11 | 11 | B.1.617.2 | 0.000041 |
N | 228 | N228N | aaC | aaT | 11 | 11 | B.1.637 | 0.000804 |
N | 228 | N228N | aaC | aaT | 11 | 11 | C.37 | 0.001277 |
N | 228 | N228N | aaC | aaT | 10 | 10 | AY.106 | 0.003349 |
N | 228 | N228K | aaC | aaA | 10 | 10 | AY.14 | 0.00088 |
N | 228 | N228N | aaC | aaT | 10 | 10 | B.1.1.63 | 0.003858 |
N | 228 | N228T | aAc | aCc | 10 | 10 | B.1.177 | 0.000132 |
N | 228 | N228N | aaC | aaT | 9 | 9 | AY.4.2 | 0.000195 |
N | 228 | N228N | aaC | aaT | 9 | 9 | AY.46 | 0.000937 |
N | 228 | N228N | aaC | aaT | 9 | 9 | B.1.1.434 | 0.003137 |
N | 228 | N228N | aaC | aaT | 9 | 9 | B.1.221 | 0.000639 |
N | 228 | N228N | aaC | aaT | 9 | 9 | B.1.577 | 0.006186 |
N | 228 | N228N | aaC | aaT | 9 | 9 | B.1.621 | 0.000797 |
N | 228 | N228N | aaC | aaT | 9 | 9 | B.1.628 | 0.003171 |
N | 228 | N228N | aaC | aaT | 9 | 9 | P.1.16 | 0.003367 |
N | 228 | N228N | aaC | aaT | 8 | 8 | AY.116 | 0.002294 |
N | 228 | N228N | aaC | aaT | 8 | 8 | AY.116.1 | 0.002491 |
N | 228 | N228N | aaC | aaT | 8 | 8 | AY.34 | 0.000776 |
N | 228 | N228N | aaC | aaT | 8 | 8 | AY.6 | 0.000329 |
N | 228 | N228N | aaC | aaT | 8 | 8 | P.1.14 | 0.000382 |
N | 228 | N228N | aaC | aaT | 8 | 8 | P.1.15 | 0.001859 |
N | 228 | N228N | aaC | aaT | 7 | 7 | AY.113 | 0.000997 |
N | 228 | N228N | aaC | aaT | 7 | 7 | AY.16.1 | 0.003289 |
N | 228 | N228N | aaC | aaT | 7 | 7 | AY.23 | 0.000488 |
N | 228 | N228N | aaC | aaT | 7 | 7 | AY.3.1 | 0.000597 |
N | 228 | N228N | aaC | aaT | 7 | 7 | AY.36 | 0.001037 |
N | 228 | N228K | aaC | aaA | 6 | 7 | AY.4 | 0.000009 |
N | 228 | N228K | aaC | aaG | 1 | 7 | AY.4 | 0.000002 |
N | 228 | N228N | aaC | aaT | 7 | 7 | AY.69 | 0.001307 |
N | 228 | N228N | aaC | aaT | 7 | 7 | AY.86 | 0.005809 |
N | 228 | N228N | aaC | aaT | 7 | 7 | AY.98 | 0.000553 |
N | 228 | N228S | aAc | aGc | 7 | 7 | B.1.1.7 | 0.000006 |
N | 228 | N228N | aaC | aaT | 7 | 7 | B.1.234 | 0.000924 |
N | 228 | N228N | aaC | aaT | 7 | 7 | B.6.6 | 0.006222 |
N | 228 | N228del | AAC | --- | 6 | 6 | B.1 | 0.000055 |
N | 228 | N228N | aaC | aaT | 6 | 6 | B.1.1.222 | 0.001224 |
N | 228 | N228N | aaC | aaT | 6 | 6 | B.1.110.3 | 0.00431 |
N | 228 | N228S | aAc | aGc | 6 | 6 | B.1.2 | 0.000053 |
N | 228 | N228N | aaC | aaT | 6 | 6 | B.1.596 | 0.000523 |
N | 228 | N228Y | Aac | Tac | 6 | 6 | B.4.5 | 0.071429 |
N | 228 | N228N | aaC | aaT | 6 | 6 | Q.1 | 0.000758 |
N | 228 | N228I | aAc | aTc | 5 | 5 | All | 0.000001 |
N | 228 | N228E | AaC | GaA | 4 | 5 | All | 0.000001 |
N | 228 | N228E | AaC | GaG | 1 | 5 | All | 0 |
N | 228 | N228N | aaC | aaT | 5 | 5 | AY.121 | 0.000677 |
N | 228 | N228N | aaC | aaT | 5 | 5 | AY.14 | 0.00044 |
N | 228 | N228S | aAc | aGc | 5 | 5 | AY.4 | 0.000008 |
N | 228 | N228N | aaC | aaT | 5 | 5 | AY.45 | 0.000608 |
N | 228 | N228H | Aac | Cac | 5 | 5 | AY.46.6 | 0.000361 |
N | 228 | N228N | aaC | aaT | 5 | 5 | AY.47 | 0.000156 |
N | 228 | N228N | aaC | aaT | 5 | 5 | B.1.1.216 | 0.004452 |
N | 228 | N228K | aaC | aaA | 5 | 5 | B.1.1.70 | 0.001705 |
N | 228 | N228N | aaC | aaT | 5 | 5 | B.1.139 | 0.003666 |
N | 228 | N228N | aaC | aaT | 5 | 5 | B.1.177.21 | 0.000382 |
N | 228 | N228S | aAc | aGc | 5 | 5 | B.1.258 | 0.000333 |
N | 228 | N228D | Aac | Gac | 5 | 5 | B.1.489 | 0.217391 |
N | 228 | N228S | aAc | aGc | 4 | 4 | AY.39.1 | 0.000158 |
N | 228 | N228H | Aac | Cac | 4 | 4 | AY.4.2 | 0.000087 |
N | 228 | N228N | aaC | aaT | 4 | 4 | AY.40 | 0.003857 |
N | 228 | N228N | aaC | aaT | 4 | 4 | AY.75 | 0.000224 |
N | 228 | N228N | aaC | aaT | 4 | 4 | B.1.1.348 | 0.003185 |
N | 228 | N228N | aaC | aaT | 4 | 4 | B.1.1.416 | 0.00362 |
N | 228 | N228del | AAC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
N | 228 | N228N | aaC | aaT | 4 | 4 | B.1.177.63 | 0.010811 |
N | 228 | N228D | Aac | Gac | 4 | 4 | B.1.221 | 0.000284 |
N | 228 | N228H | Aac | Cac | 4 | 4 | B.1.258.17 | 0.000416 |
N | 228 | N228N | aaC | aaT | 4 | 4 | B.1.311 | 0.001098 |
N | 228 | N228N | aaC | aaT | 4 | 4 | B.1.426 | 0.004036 |
N | 228 | N228N | aaC | aaT | 4 | 4 | B.1.595 | 0.001044 |
N | 228 | N228N | aaC | aaT | 4 | 4 | B.1.609 | 0.001918 |
N | 228 | N228N | aaC | aaT | 4 | 4 | B.1.617.1 | 0.000516 |
N | 228 | N228N | aaC | aaT | 4 | 4 | P.1.10 | 0.001078 |
N | 228 | N228S | aAc | aGc | 4 | 4 | P.1.14 | 0.000191 |
N | 228 | N228N | aaC | aaT | 4 | 4 | P.2 | 0.000747 |
N | 228 | N228N | aaC | aaT | 3 | 3 | A.2.5 | 0.001497 |
N | 228 | N228N | aaC | aaT | 3 | 3 | A.21 | 0.00831 |
N | 228 | N228N | aaC | aaT | 3 | 3 | AE.8 | 0.001467 |
N | 228 | N228del1 | aaC | aa- | 2 | 3 | All | 0 |
N | 228 | N228X | AAC | TGA | 1 | 3 | All | 0 |
N | 228 | N228X | AaC | TaG | 1 | 3 | All | 0 |
N | 228 | N228X | AaC | TaA | 1 | 3 | All | 0 |
N | 228 | N228del1 | Aac | -ac | 1 | 3 | All | 0 |
N | 228 | N228G | AAC | GGG | 1 | 3 | All | 0 |
N | 228 | N228G | AAc | GGc | 1 | 3 | All | 0 |
N | 228 | N228G | AAC | GGA | 1 | 3 | All | 0 |
N | 228 | N228N | aaC | aaT | 3 | 3 | AY.16 | 0.001139 |
N | 228 | N228H | Aac | Cac | 3 | 3 | AY.25 | 0.000018 |
N | 228 | N228H | Aac | Cac | 3 | 3 | AY.4 | 0.000005 |
N | 228 | N228Y | Aac | Tac | 3 | 3 | AY.43 | 0.000013 |
N | 228 | N228N | aaC | aaT | 3 | 3 | AY.46.1 | 0.00308 |
N | 228 | N228N | aaC | aaT | 3 | 3 | AY.52 | 0.002443 |
N | 228 | N228N | aaC | aaT | 3 | 3 | AY.61 | 0.000314 |
N | 228 | N228N | aaC | aaT | 3 | 3 | AY.9 | 0.000203 |
N | 228 | N228N | aaC | aaT | 3 | 3 | AY.98.1 | 0.000145 |
N | 228 | N228K | aaC | aaA | 2 | 3 | B.1 | 0.000018 |
N | 228 | N228K | aaC | aaG | 1 | 3 | B.1 | 0.000009 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.1.243 | 0.012245 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.1.284 | 0.000322 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.1.306 | 0.001315 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.1.318 | 0.000905 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.1.37 | 0.000579 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.1.70 | 0.001023 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.177.52 | 0.005272 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.206 | 0.002447 |
N | 228 | N228X | AaC | TaA | 1 | 3 | B.1.221 | 0.000071 |
N | 228 | N228G | AAC | GGA | 1 | 3 | B.1.221 | 0.000071 |
N | 228 | N228G | AAc | GGc | 1 | 3 | B.1.221 | 0.000071 |
N | 228 | N228X | AaC | TaG | 1 | 3 | B.1.221 | 0.000071 |
N | 228 | N228G | AAC | GGG | 1 | 3 | B.1.221 | 0.000071 |
N | 228 | N228X | AAC | TGA | 1 | 3 | B.1.221 | 0.000071 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.298 | 0.006342 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.1.575 | 0.00091 |
N | 228 | N228N | aaC | aaT | 3 | 3 | B.6 | 0.00273 |
N | 228 | N228Y | Aac | Tac | 3 | 3 | P.1 | 0.000047 |
N | 228 | N228N | aaC | aaT | 3 | 3 | Q.8 | 0.000495 |
N | 228 | N228D | Aac | Gac | 2 | 2 | 0.111111 | |
N | 228 | N228R | aAC | aGG | 1 | 2 | All | 0 |
N | 228 | N228R | aAC | aGA | 1 | 2 | All | 0 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.10 | 0.00106 |
N | 228 | N228K | aaC | aaA | 2 | 2 | AY.102 | 0.000053 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.117 | 0.000169 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.13 | 0.000322 |
N | 228 | N228K | aaC | aaA | 2 | 2 | AY.25 | 0.000012 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.30 | 0.000791 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.32 | 0.001065 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.38 | 0.000999 |
N | 228 | N228del | AAC | --- | 2 | 2 | AY.43 | 0.000009 |
N | 228 | N228del | AAC | --- | 2 | 2 | AY.50 | 0.001599 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.56 | 0.00321 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.60 | 0.001876 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.62 | 0.000871 |
N | 228 | N228K | aaC | aaA | 2 | 2 | AY.7 | 0.000392 |
N | 228 | N228K | aaC | aaA | 2 | 2 | AY.79 | 0.002421 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.85 | 0.000854 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.91 | 0.001461 |
N | 228 | N228N | aaC | aaT | 2 | 2 | AY.99.2 | 0.000184 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B | 0.000256 |
N | 228 | N228Y | Aac | Tac | 2 | 2 | B.1 | 0.000018 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.1.176 | 0.000879 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.1.201 | 0.04878 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.1.304 | 0.005618 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.1.33 | 0.000842 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.1.487 | 0.011173 |
N | 228 | N228I | aAc | aTc | 2 | 2 | B.1.1.7 | 0.000002 |
N | 228 | N228K | aaC | aaG | 1 | 2 | B.1.1.7 | 0.000001 |
N | 228 | N228K | aaC | aaA | 1 | 2 | B.1.1.7 | 0.000001 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.157 | 0.00597 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.177.10 | 0.001756 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.177.50 | 0.00939 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.177.60 | 0.000437 |
N | 228 | N228del | AAC | --- | 2 | 2 | B.1.2 | 0.000018 |
N | 228 | N228E | AaC | GaG | 1 | 2 | B.1.221 | 0.000071 |
N | 228 | N228R | aAC | aGG | 1 | 2 | B.1.221 | 0.000071 |
N | 228 | N228R | aAC | aGA | 1 | 2 | B.1.221 | 0.000071 |
N | 228 | N228K | aaC | aaA | 1 | 2 | B.1.221 | 0.000071 |
N | 228 | N228K | aaC | aaG | 1 | 2 | B.1.221 | 0.000071 |
N | 228 | N228E | AaC | GaA | 1 | 2 | B.1.221 | 0.000071 |
N | 228 | N228H | Aac | Cac | 2 | 2 | B.1.243 | 0.000139 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.258.15 | 0.037736 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.320 | 0.002491 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.349 | 0.00143 |
N | 228 | N228del | AAC | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.443 | 0.009346 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.469 | 0.00722 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.1.507 | 0.022472 |
N | 228 | N228D | Aac | Gac | 2 | 2 | B.1.617.2 | 0.000008 |
N | 228 | N228H | Aac | Cac | 2 | 2 | B.1.617.2 | 0.000008 |
N | 228 | N228del | AAC | --- | 2 | 2 | B.1.627 | 0.00404 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.4.4 | 0.037736 |
N | 228 | N228N | aaC | aaT | 2 | 2 | B.40 | 0.000729 |
N | 228 | N228S | aAc | aGc | 2 | 2 | P.1 | 0.000032 |
N | 228 | N228N | aaC | aaT | 2 | 2 | P.1.1 | 0.000635 |
N | 228 | N228N | aaC | aaT | 2 | 2 | P.1.9 | 0.009615 |
N | 228 | N228K | aaC | aaA | 1 | 1 | 0.055556 | |
N | 228 | N228E | AaC | GaA | 1 | 1 | 0.055556 | |
N | 228 | N228N | aaC | aaT | 1 | 1 | A.1 | 0.000282 |
N | 228 | N228Y | Aac | Tac | 1 | 1 | A.2 | 0.000662 |
N | 228 | N228K | aaC | aaA | 1 | 1 | A.2.4 | 0.003367 |
N | 228 | N228D | Aac | Gac | 1 | 1 | A.2.4 | 0.003367 |
N | 228 | N228N | aaC | aaT | 1 | 1 | A.2.4 | 0.003367 |
N | 228 | N228E | AaC | GaA | 1 | 1 | A.2.4 | 0.003367 |
N | 228 | N228N | aaC | aaT | 1 | 1 | A.23.1 | 0.000704 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AD.2 | 0.000219 |
N | 228 | N228del2 | aAC | a-- | 1 | 1 | All | 0 |
N | 228 | N228W | AAC | TGG | 1 | 1 | All | 0 |
N | 228 | N228C | AAc | TGc | 1 | 1 | All | 0 |
N | 228 | N228M | aAC | aTG | 1 | 1 | All | 0 |
N | 228 | N228V | AAc | GTc | 1 | 1 | All | 0 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AU.1 | 0.001266 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.11 | 0.001339 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.110 | 0.000113 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.113 | 0.000142 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.115 | 0.005208 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.116.1 | 0.000311 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.118 | 0.000063 |
N | 228 | N228H | Aac | Cac | 1 | 1 | AY.118 | 0.000063 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.120.2 | 0.001285 |
N | 228 | N228D | Aac | Gac | 1 | 1 | AY.14 | 0.000088 |
N | 228 | N228H | Aac | Cac | 1 | 1 | AY.16.1 | 0.00047 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.19 | 0.00114 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.20 | 0.000039 |
N | 228 | N228del | AAC | --- | 1 | 1 | AY.25 | 0.000006 |
N | 228 | N228H | Aac | Cac | 1 | 1 | AY.26 | 0.000028 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.3 | 0.00001 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.30 | 0.000396 |
N | 228 | N228S | aAc | aGc | 1 | 1 | AY.33 | 0.000067 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.34.1 | 0.00051 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 228 | N228H | Aac | Cac | 1 | 1 | AY.40 | 0.000964 |
N | 228 | N228del | AAC | --- | 1 | 1 | AY.40 | 0.000964 |
N | 228 | N228S | aAc | aGc | 1 | 1 | AY.41 | 0.000294 |
N | 228 | N228S | aAc | aGc | 1 | 1 | AY.43 | 0.000004 |
N | 228 | N228T | aAc | aCc | 1 | 1 | AY.43 | 0.000004 |
N | 228 | N228T | aAC | aCT | 1 | 1 | AY.46 | 0.000104 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.46.3 | 0.000934 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.46.4 | 0.000165 |
N | 228 | N228S | aAc | aGc | 1 | 1 | AY.46.5 | 0.000198 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.5.4 | 0.000277 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.63 | 0.000387 |
N | 228 | N228I | aAc | aTc | 1 | 1 | AY.68 | 0.000274 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.69 | 0.000187 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.73 | 0.000665 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.74 | 0.000116 |
N | 228 | N228del | AAC | --- | 1 | 1 | AY.75 | 0.000056 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.79 | 0.001211 |
N | 228 | N228I | aAc | aTc | 1 | 1 | AY.79 | 0.001211 |
N | 228 | N228E | AaC | GaA | 1 | 1 | AY.85 | 0.000427 |
N | 228 | N228K | aaC | aaA | 1 | 1 | AY.85 | 0.000427 |
N | 228 | N228D | Aac | Gac | 1 | 1 | AY.85 | 0.000427 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.87 | 0.000833 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.90 | 0.000684 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.92 | 0.000287 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.95 | 0.000761 |
N | 228 | N228N | aaC | aaT | 1 | 1 | AY.96 | 0.002075 |
N | 228 | N228S | aAc | aGc | 1 | 1 | AY.98.1 | 0.000048 |
N | 228 | N228I | aAc | aTc | 1 | 1 | B.1 | 0.000009 |
N | 228 | N228S | aAc | aGc | 1 | 1 | B.1 | 0.000009 |
N | 228 | N228M | aAC | aTG | 1 | 1 | B.1 | 0.000009 |
N | 228 | N228D | Aac | Gac | 1 | 1 | B.1 | 0.000009 |
N | 228 | N228Y | Aac | Tac | 1 | 1 | B.1.1 | 0.000018 |
N | 228 | N228D | Aac | Gac | 1 | 1 | B.1.1 | 0.000018 |
N | 228 | N228H | Aac | Cac | 1 | 1 | B.1.1 | 0.000018 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.111 | 0.014706 |
N | 228 | N228del | AAC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.141 | 0.002012 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.196 | 0.005714 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.200 | 0.007463 |
N | 228 | N228H | Aac | Cac | 1 | 1 | B.1.1.207 | 0.001182 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.209 | 0.008929 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.234 | 0.012048 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.282 | 0.011628 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.285 | 0.006536 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.289 | 0.002083 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.317 | 0.000412 |
N | 228 | N228del1 | Aac | -ac | 1 | 1 | B.1.1.33 | 0.000421 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.337 | 0.003597 |
N | 228 | N228H | Aac | Cac | 1 | 1 | B.1.1.37 | 0.000193 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.372 | 0.000689 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.373 | 0.02381 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.43 | 0.014925 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.432 | 0.001266 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.449 | 0.022727 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.526 | 0.003546 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.528 | 0.004808 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.1.61 | 0.008772 |
N | 228 | N228Y | Aac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
N | 228 | N228del1 | aaC | aa- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 228 | N228T | aAc | aCc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.128 | 0.000635 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.160.10 | 0.008065 |
N | 228 | N228D | Aac | Gac | 1 | 1 | B.1.177 | 0.000013 |
N | 228 | N228S | aAc | aGc | 1 | 1 | B.1.177 | 0.000013 |
N | 228 | N228K | aaC | aaA | 1 | 1 | B.1.177 | 0.000013 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.15 | 0.000631 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.44 | 0.000519 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.55 | 0.002331 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.69 | 0.001484 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.7 | 0.000165 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.73 | 0.000566 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.77 | 0.000726 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.177.8 | 0.000752 |
N | 228 | N228T | aAc | aCc | 1 | 1 | B.1.177.86 | 0.000183 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.179 | 0.003759 |
N | 228 | N228D | Aac | Gac | 1 | 1 | B.1.2 | 0.000009 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.220 | 0.01087 |
N | 228 | N228C | AAc | TGc | 1 | 1 | B.1.221 | 0.000071 |
N | 228 | N228Y | Aac | Tac | 1 | 1 | B.1.221 | 0.000071 |
N | 228 | N228W | AAC | TGG | 1 | 1 | B.1.221 | 0.000071 |
N | 228 | N228S | aAc | aGc | 1 | 1 | B.1.221 | 0.000071 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.239 | 0.001221 |
N | 228 | N228K | aaC | aaA | 1 | 1 | B.1.240 | 0.000216 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 228 | N228del | AAC | --- | 1 | 1 | B.1.260 | 0.003344 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.336 | 0.002439 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.351.3 | 0.000876 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.36.10 | 0.004785 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.36.36 | 0.000602 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.361 | 0.001289 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.396 | 0.000706 |
N | 228 | N228K | aaC | aaA | 1 | 1 | B.1.427 | 0.00005 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.428.3 | 0.012821 |
N | 228 | N228D | Aac | Gac | 1 | 1 | B.1.429 | 0.000024 |
N | 228 | N228del | AAC | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.462 | 0.007246 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.466.2 | 0.000391 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.470 | 0.001404 |
N | 228 | N228Y | Aac | Tac | 1 | 1 | B.1.499 | 0.00105 |
N | 228 | N228del | AAC | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 228 | N228T | aAc | aCc | 1 | 1 | B.1.526 | 0.000024 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.558 | 0.004566 |
N | 228 | N228V | AAc | GTc | 1 | 1 | B.1.560 | 0.00463 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.564 | 0.000426 |
N | 228 | N228del | AAC | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 228 | N228del | AAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 228 | N228del | AAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 228 | N228Y | Aac | Tac | 1 | 1 | B.1.617.2 | 0.000004 |
N | 228 | N228S | aAc | aGc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 228 | N228del1 | aaC | aa- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.625 | 0.002353 |
N | 228 | N228S | aAc | aGc | 1 | 1 | B.1.637 | 0.000073 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.1.96 | 0.018868 |
N | 228 | N228N | aaC | aaT | 1 | 1 | B.3.1 | 0.001658 |
N | 228 | N228N | aaC | aaT | 1 | 1 | C.2 | 0.016129 |
N | 228 | N228del2 | aAC | a-- | 1 | 1 | C.35 | 0.000774 |
N | 228 | N228D | Aac | Gac | 1 | 1 | C.37 | 0.000116 |
N | 228 | N228del | AAC | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 228 | N228N | aaC | aaT | 1 | 1 | C.8 | 0.004464 |
N | 228 | N228N | aaC | aaT | 1 | 1 | N.2 | 0.038462 |
N | 228 | N228N | aaC | aaT | 1 | 1 | P.1.7 | 0.000319 |
N | 228 | N228S | aAc | aGc | 1 | 1 | P.1.7 | 0.000319 |
N | 228 | N228N | aaC | aaT | 1 | 1 | Q.4 | 0.000455 |
N | 228 | N228H | Aac | Cac | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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