CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 228

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N228N228NsynaaCaaT83208320128955-28957
N228N228KnonsynaaCaaA3363320.98809528955-28957
N228N228KnonsynaaCaaG33640.011904828955-28957
N228N228SnonsynaAcaGc4444128955-28957
N228N228HnonsynAacCac3131128955-28957
N228N228deldelAAC---3131128955-28957
N228N228DnonsynAacGac2222128955-28957
N228N228YnonsynAacTac2020128955-28957
N228N228TnonsynaAcaCc15140.93333328955-28957
N228N228TnonsynaACaCT1510.066666728955-28957
N228N228InonsynaAcaTc55128955-28957
N228N228EnonsynAaCGaA540.828955-28957
N228N228EnonsynAaCGaG510.228955-28957
N228N228del1delaaCaa-320.66666728955-28957
N228N228GnonsynAAcGGc310.33333328955-28957
N228N228XnonsynAaCTaA310.33333328955-28957
N228N228GnonsynAACGGG310.33333328955-28957
N228N228XnonsynAACTGA310.33333328955-28957
N228N228GnonsynAACGGA310.33333328955-28957
N228N228del1delAac-ac310.33333328955-28957
N228N228XnonsynAaCTaG310.33333328955-28957
N228N228RnonsynaACaGG210.528955-28957
N228N228RnonsynaACaGA210.528955-28957
N228N228VnonsynAAcGTc11128955-28957
N228N228WnonsynAACTGG11128955-28957
N228N228MnonsynaACaTG11128955-28957
N228N228CnonsynAAcTGc11128955-28957
N228N228del2delaACa--11128955-28957

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N228N228NaaCaaT83208320All0.001591
N228N228NaaCaaT15561556B.1.619.10.998076
N228N228NaaCaaT12891289B.1.1.70.001154
N228N228NaaCaaT648648AY.40.001009
N228N228NaaCaaT618618P.10.009736
N228N228NaaCaaT427427B.1.617.20.001608
N228N228KaaCaaA332336All0.000063
N228N228KaaCaaG4336All0.000001
N228N228NaaCaaT294294B.1.6310.989899
N228N228KaaCaaA274274AY.440.001668
N228N228NaaCaaT247247AY.940.10934
N228N228NaaCaaT239239AY.430.001059
N228N228NaaCaaT218218B.1.4290.005129
N228N228NaaCaaT171171AY.39.10.006774
N228N228NaaCaaT131131AY.250.000788
N228N228NaaCaaT130130B.1.1600.004054
N228N228NaaCaaT120120B.1.1.4200.120724
N228N228NaaCaaT110110AY.1030.000683
N228N228NaaCaaT105105AY.200.004081
N228N228NaaCaaT103103B.1.20.000907
N228N228NaaCaaT101101B.1.2430.007028
N228N228NaaCaaT9595AY.330.006344
N228N228NaaCaaT5959B.10.00054
N228N228NaaCaaT5858B.1.1.2140.003217
N228N228NaaCaaT5757B.1.10.001034
N228N228NaaCaaT5454AY.440.000329
N228N228NaaCaaT5454B.1.3480.981818
N228N228NaaCaaT4848B.1.1770.000632
N228N228SaAcaGc4444All0.000008
N228N228NaaCaaT4242B.1.1.5190.001668
N228N228NaaCaaT3737AY.1000.001702
N228N228NaaCaaT3636B.1.5260.000846
N228N228NaaCaaT3434B.1.3690.009698
N228N228NaaCaaT3232AY.390.000791
N228N228NaaCaaT3232AY.540.003051
N228N228HAacCac3131All0.000006
N228N228delAAC---3131All0.000006
N228N228NaaCaaT3131AY.50.00064
N228N228NaaCaaT3030AY.420.001207
N228N228NaaCaaT2929B.1.351.20.008775
N228N228NaaCaaT2727AY.370.008534
N228N228NaaCaaT2626AY.1180.001629
N228N228NaaCaaT2525AY.270.001618
N228N228NaaCaaT2424P.1.120.011617
N228N228DAacGac2222All0.000004
N228N228NaaCaaT2121B.1.2580.001397
N228N228NaaCaaT2121B.1.6190.018293
N228N228YAacTac2020All0.000004
N228N228NaaCaaT2020AY.30.000199
N228N228NaaCaaT2020B.1.1.280.006225
N228N228NaaCaaT1919AU.20.046005
N228N228NaaCaaT1919AY.1020.000504
N228N228NaaCaaT1919B.1.177.40.00401
N228N228NaaCaaT1919B.1.3510.000565
N228N228NaaCaaT1818B.1.177.860.003302
N228N228NaaCaaT1818B.1.258.170.001871
N228N228NaaCaaT1818C.40.18
N228N228NaaCaaT1616AY.260.000453
N228N228NaaCaaT1616AY.290.000252
N228N228TaAcaCc1415All0.000003
N228N228TaACaCT115All0
N228N228NaaCaaT1515AY.9.20.000551
N228N228NaaCaaT1515B.1.4270.000757
N228N228NaaCaaT1414AY.1200.000521
N228N228NaaCaaT1414AY.120.2.10.006976
N228N228NaaCaaT1414AY.4.50.001505
N228N228NaaCaaT1414AY.510.012727
N228N228NaaCaaT1414B.1.1.10.004574
N228N228NaaCaaT1414B.1.1.2650.044164
N228N228NaaCaaT1414B.1.2400.003018
N228N228NaaCaaT1414B.1.360.002043
N228N228NaaCaaT1313B.1.438.10.001394
N228N228NaaCaaT1313B.1.5250.001471
N228N228NaaCaaT1212D.20.0009
N228N228NaaCaaT1111AY.1190.000388
N228N228KaaCaaA1111B.1.617.20.000041
N228N228NaaCaaT1111B.1.6370.000804
N228N228NaaCaaT1111C.370.001277
N228N228NaaCaaT1010AY.1060.003349
N228N228KaaCaaA1010AY.140.00088
N228N228NaaCaaT1010B.1.1.630.003858
N228N228TaAcaCc1010B.1.1770.000132
N228N228NaaCaaT99AY.4.20.000195
N228N228NaaCaaT99AY.460.000937
N228N228NaaCaaT99B.1.1.4340.003137
N228N228NaaCaaT99B.1.2210.000639
N228N228NaaCaaT99B.1.5770.006186
N228N228NaaCaaT99B.1.6210.000797
N228N228NaaCaaT99B.1.6280.003171
N228N228NaaCaaT99P.1.160.003367
N228N228NaaCaaT88AY.1160.002294
N228N228NaaCaaT88AY.116.10.002491
N228N228NaaCaaT88AY.340.000776
N228N228NaaCaaT88AY.60.000329
N228N228NaaCaaT88P.1.140.000382
N228N228NaaCaaT88P.1.150.001859
N228N228NaaCaaT77AY.1130.000997
N228N228NaaCaaT77AY.16.10.003289
N228N228NaaCaaT77AY.230.000488
N228N228NaaCaaT77AY.3.10.000597
N228N228NaaCaaT77AY.360.001037
N228N228KaaCaaA67AY.40.000009
N228N228KaaCaaG17AY.40.000002
N228N228NaaCaaT77AY.690.001307
N228N228NaaCaaT77AY.860.005809
N228N228NaaCaaT77AY.980.000553
N228N228SaAcaGc77B.1.1.70.000006
N228N228NaaCaaT77B.1.2340.000924
N228N228NaaCaaT77B.6.60.006222
N228N228delAAC---66B.10.000055
N228N228NaaCaaT66B.1.1.2220.001224
N228N228NaaCaaT66B.1.110.30.00431
N228N228SaAcaGc66B.1.20.000053
N228N228NaaCaaT66B.1.5960.000523
N228N228YAacTac66B.4.50.071429
N228N228NaaCaaT66Q.10.000758
N228N228IaAcaTc55All0.000001
N228N228EAaCGaA45All0.000001
N228N228EAaCGaG15All0
N228N228NaaCaaT55AY.1210.000677
N228N228NaaCaaT55AY.140.00044
N228N228SaAcaGc55AY.40.000008
N228N228NaaCaaT55AY.450.000608
N228N228HAacCac55AY.46.60.000361
N228N228NaaCaaT55AY.470.000156
N228N228NaaCaaT55B.1.1.2160.004452
N228N228KaaCaaA55B.1.1.700.001705
N228N228NaaCaaT55B.1.1390.003666
N228N228NaaCaaT55B.1.177.210.000382
N228N228SaAcaGc55B.1.2580.000333
N228N228DAacGac55B.1.4890.217391
N228N228SaAcaGc44AY.39.10.000158
N228N228HAacCac44AY.4.20.000087
N228N228NaaCaaT44AY.400.003857
N228N228NaaCaaT44AY.750.000224
N228N228NaaCaaT44B.1.1.3480.003185
N228N228NaaCaaT44B.1.1.4160.00362
N228N228delAAC---44B.1.1.70.000004
N228N228NaaCaaT44B.1.177.630.010811
N228N228DAacGac44B.1.2210.000284
N228N228HAacCac44B.1.258.170.000416
N228N228NaaCaaT44B.1.3110.001098
N228N228NaaCaaT44B.1.4260.004036
N228N228NaaCaaT44B.1.5950.001044
N228N228NaaCaaT44B.1.6090.001918
N228N228NaaCaaT44B.1.617.10.000516
N228N228NaaCaaT44P.1.100.001078
N228N228SaAcaGc44P.1.140.000191
N228N228NaaCaaT44P.20.000747
N228N228NaaCaaT33A.2.50.001497
N228N228NaaCaaT33A.210.00831
N228N228NaaCaaT33AE.80.001467
N228N228del1aaCaa-23All0
N228N228XAACTGA13All0
N228N228XAaCTaG13All0
N228N228XAaCTaA13All0
N228N228del1Aac-ac13All0
N228N228GAACGGG13All0
N228N228GAAcGGc13All0
N228N228GAACGGA13All0
N228N228NaaCaaT33AY.160.001139
N228N228HAacCac33AY.250.000018
N228N228HAacCac33AY.40.000005
N228N228YAacTac33AY.430.000013
N228N228NaaCaaT33AY.46.10.00308
N228N228NaaCaaT33AY.520.002443
N228N228NaaCaaT33AY.610.000314
N228N228NaaCaaT33AY.90.000203
N228N228NaaCaaT33AY.98.10.000145
N228N228KaaCaaA23B.10.000018
N228N228KaaCaaG13B.10.000009
N228N228NaaCaaT33B.1.1.2430.012245
N228N228NaaCaaT33B.1.1.2840.000322
N228N228NaaCaaT33B.1.1.3060.001315
N228N228NaaCaaT33B.1.1.3180.000905
N228N228NaaCaaT33B.1.1.370.000579
N228N228NaaCaaT33B.1.1.700.001023
N228N228NaaCaaT33B.1.177.520.005272
N228N228NaaCaaT33B.1.2060.002447
N228N228XAaCTaA13B.1.2210.000071
N228N228GAACGGA13B.1.2210.000071
N228N228GAAcGGc13B.1.2210.000071
N228N228XAaCTaG13B.1.2210.000071
N228N228GAACGGG13B.1.2210.000071
N228N228XAACTGA13B.1.2210.000071
N228N228NaaCaaT33B.1.2980.006342
N228N228NaaCaaT33B.1.5750.00091
N228N228NaaCaaT33B.60.00273
N228N228YAacTac33P.10.000047
N228N228NaaCaaT33Q.80.000495
N228N228DAacGac220.111111
N228N228RaACaGG12All0
N228N228RaACaGA12All0
N228N228NaaCaaT22AY.100.00106
N228N228KaaCaaA22AY.1020.000053
N228N228NaaCaaT22AY.1170.000169
N228N228NaaCaaT22AY.130.000322
N228N228KaaCaaA22AY.250.000012
N228N228NaaCaaT22AY.300.000791
N228N228NaaCaaT22AY.320.001065
N228N228NaaCaaT22AY.380.000999
N228N228delAAC---22AY.430.000009
N228N228delAAC---22AY.500.001599
N228N228NaaCaaT22AY.560.00321
N228N228NaaCaaT22AY.600.001876
N228N228NaaCaaT22AY.620.000871
N228N228KaaCaaA22AY.70.000392
N228N228KaaCaaA22AY.790.002421
N228N228NaaCaaT22AY.850.000854
N228N228NaaCaaT22AY.910.001461
N228N228NaaCaaT22AY.99.20.000184
N228N228NaaCaaT22B0.000256
N228N228YAacTac22B.10.000018
N228N228NaaCaaT22B.1.1.1760.000879
N228N228NaaCaaT22B.1.1.2010.04878
N228N228NaaCaaT22B.1.1.3040.005618
N228N228NaaCaaT22B.1.1.330.000842
N228N228NaaCaaT22B.1.1.4870.011173
N228N228IaAcaTc22B.1.1.70.000002
N228N228KaaCaaG12B.1.1.70.000001
N228N228KaaCaaA12B.1.1.70.000001
N228N228NaaCaaT22B.1.1570.00597
N228N228NaaCaaT22B.1.177.100.001756
N228N228NaaCaaT22B.1.177.500.00939
N228N228NaaCaaT22B.1.177.600.000437
N228N228delAAC---22B.1.20.000018
N228N228EAaCGaG12B.1.2210.000071
N228N228RaACaGG12B.1.2210.000071
N228N228RaACaGA12B.1.2210.000071
N228N228KaaCaaA12B.1.2210.000071
N228N228KaaCaaG12B.1.2210.000071
N228N228EAaCGaA12B.1.2210.000071
N228N228HAacCac22B.1.2430.000139
N228N228NaaCaaT22B.1.258.150.037736
N228N228NaaCaaT22B.1.3200.002491
N228N228NaaCaaT22B.1.3490.00143
N228N228delAAC---22B.1.3510.000059
N228N228NaaCaaT22B.1.4430.009346
N228N228NaaCaaT22B.1.4690.00722
N228N228NaaCaaT22B.1.5070.022472
N228N228DAacGac22B.1.617.20.000008
N228N228HAacCac22B.1.617.20.000008
N228N228delAAC---22B.1.6270.00404
N228N228NaaCaaT22B.4.40.037736
N228N228NaaCaaT22B.400.000729
N228N228SaAcaGc22P.10.000032
N228N228NaaCaaT22P.1.10.000635
N228N228NaaCaaT22P.1.90.009615
N228N228KaaCaaA110.055556
N228N228EAaCGaA110.055556
N228N228NaaCaaT11A.10.000282
N228N228YAacTac11A.20.000662
N228N228KaaCaaA11A.2.40.003367
N228N228DAacGac11A.2.40.003367
N228N228NaaCaaT11A.2.40.003367
N228N228EAaCGaA11A.2.40.003367
N228N228NaaCaaT11A.23.10.000704
N228N228NaaCaaT11AD.20.000219
N228N228del2aACa--11All0
N228N228WAACTGG11All0
N228N228CAAcTGc11All0
N228N228MaACaTG11All0
N228N228VAAcGTc11All0
N228N228NaaCaaT11AU.10.001266
N228N228NaaCaaT11AY.110.001339
N228N228NaaCaaT11AY.1100.000113
N228N228KaaCaaA11AY.1130.000142
N228N228NaaCaaT11AY.1150.005208
N228N228KaaCaaA11AY.116.10.000311
N228N228KaaCaaA11AY.1180.000063
N228N228HAacCac11AY.1180.000063
N228N228NaaCaaT11AY.120.20.001285
N228N228DAacGac11AY.140.000088
N228N228HAacCac11AY.16.10.00047
N228N228NaaCaaT11AY.190.00114
N228N228KaaCaaA11AY.200.000039
N228N228delAAC---11AY.250.000006
N228N228HAacCac11AY.260.000028
N228N228KaaCaaA11AY.30.00001
N228N228KaaCaaA11AY.300.000396
N228N228SaAcaGc11AY.330.000067
N228N228NaaCaaT11AY.34.10.00051
N228N228NaaCaaT11AY.4.2.10.000149
N228N228HAacCac11AY.400.000964
N228N228delAAC---11AY.400.000964
N228N228SaAcaGc11AY.410.000294
N228N228SaAcaGc11AY.430.000004
N228N228TaAcaCc11AY.430.000004
N228N228TaACaCT11AY.460.000104
N228N228NaaCaaT11AY.46.30.000934
N228N228KaaCaaA11AY.46.40.000165
N228N228SaAcaGc11AY.46.50.000198
N228N228NaaCaaT11AY.5.40.000277
N228N228NaaCaaT11AY.590.00053
N228N228NaaCaaT11AY.630.000387
N228N228IaAcaTc11AY.680.000274
N228N228KaaCaaA11AY.690.000187
N228N228NaaCaaT11AY.7.10.000113
N228N228NaaCaaT11AY.710.000475
N228N228NaaCaaT11AY.730.000665
N228N228NaaCaaT11AY.740.000116
N228N228delAAC---11AY.750.000056
N228N228NaaCaaT11AY.790.001211
N228N228IaAcaTc11AY.790.001211
N228N228EAaCGaA11AY.850.000427
N228N228KaaCaaA11AY.850.000427
N228N228DAacGac11AY.850.000427
N228N228NaaCaaT11AY.870.000833
N228N228NaaCaaT11AY.900.000684
N228N228NaaCaaT11AY.920.000287
N228N228NaaCaaT11AY.950.000761
N228N228NaaCaaT11AY.960.002075
N228N228SaAcaGc11AY.98.10.000048
N228N228IaAcaTc11B.10.000009
N228N228SaAcaGc11B.10.000009
N228N228MaACaTG11B.10.000009
N228N228DAacGac11B.10.000009
N228N228YAacTac11B.1.10.000018
N228N228DAacGac11B.1.10.000018
N228N228HAacCac11B.1.10.000018
N228N228NaaCaaT11B.1.1.1110.014706
N228N228delAAC---11B.1.1.1390.022727
N228N228NaaCaaT11B.1.1.1410.002012
N228N228NaaCaaT11B.1.1.1960.005714
N228N228NaaCaaT11B.1.1.2000.007463
N228N228HAacCac11B.1.1.2070.001182
N228N228NaaCaaT11B.1.1.2090.008929
N228N228NaaCaaT11B.1.1.2340.012048
N228N228NaaCaaT11B.1.1.2820.011628
N228N228NaaCaaT11B.1.1.2850.006536
N228N228NaaCaaT11B.1.1.2890.002083
N228N228NaaCaaT11B.1.1.3110.000358
N228N228NaaCaaT11B.1.1.3170.000412
N228N228del1Aac-ac11B.1.1.330.000421
N228N228NaaCaaT11B.1.1.3370.003597
N228N228HAacCac11B.1.1.370.000193
N228N228NaaCaaT11B.1.1.3720.000689
N228N228NaaCaaT11B.1.1.3730.02381
N228N228NaaCaaT11B.1.1.430.014925
N228N228NaaCaaT11B.1.1.4320.001266
N228N228NaaCaaT11B.1.1.4490.022727
N228N228NaaCaaT11B.1.1.5260.003546
N228N228NaaCaaT11B.1.1.5280.004808
N228N228NaaCaaT11B.1.1.610.008772
N228N228YAacTac11B.1.1.70.000001
N228N228del1aaCaa-11B.1.1.70.000001
N228N228TaAcaCc11B.1.1.70.000001
N228N228NaaCaaT11B.1.1280.000635
N228N228NaaCaaT11B.1.160.100.008065
N228N228DAacGac11B.1.1770.000013
N228N228SaAcaGc11B.1.1770.000013
N228N228KaaCaaA11B.1.1770.000013
N228N228NaaCaaT11B.1.177.150.000631
N228N228NaaCaaT11B.1.177.440.000519
N228N228NaaCaaT11B.1.177.540.000606
N228N228NaaCaaT11B.1.177.550.002331
N228N228NaaCaaT11B.1.177.570.000281
N228N228NaaCaaT11B.1.177.690.001484
N228N228NaaCaaT11B.1.177.70.000165
N228N228NaaCaaT11B.1.177.730.000566
N228N228NaaCaaT11B.1.177.770.000726
N228N228NaaCaaT11B.1.177.80.000752
N228N228TaAcaCc11B.1.177.860.000183
N228N228NaaCaaT11B.1.1790.003759
N228N228DAacGac11B.1.20.000009
N228N228NaaCaaT11B.1.2200.01087
N228N228CAAcTGc11B.1.2210.000071
N228N228YAacTac11B.1.2210.000071
N228N228WAACTGG11B.1.2210.000071
N228N228SaAcaGc11B.1.2210.000071
N228N228NaaCaaT11B.1.2390.001221
N228N228KaaCaaA11B.1.2400.000216
N228N228NaaCaaT11B.1.258.110.000396
N228N228delAAC---11B.1.2600.003344
N228N228NaaCaaT11B.1.3360.002439
N228N228NaaCaaT11B.1.351.30.000876
N228N228NaaCaaT11B.1.36.100.004785
N228N228NaaCaaT11B.1.36.360.000602
N228N228NaaCaaT11B.1.3610.001289
N228N228NaaCaaT11B.1.3960.000706
N228N228KaaCaaA11B.1.4270.00005
N228N228NaaCaaT11B.1.428.30.012821
N228N228DAacGac11B.1.4290.000024
N228N228delAAC---11B.1.4390.005917
N228N228NaaCaaT11B.1.4620.007246
N228N228NaaCaaT11B.1.466.20.000391
N228N228NaaCaaT11B.1.4700.001404
N228N228YAacTac11B.1.4990.00105
N228N228delAAC---11B.1.5250.000113
N228N228TaAcaCc11B.1.5260.000024
N228N228NaaCaaT11B.1.5580.004566
N228N228VAAcGTc11B.1.5600.00463
N228N228NaaCaaT11B.1.5640.000426
N228N228delAAC---11B.1.5960.000087
N228N228delAAC---11B.1.617.10.000129
N228N228delAAC---11B.1.617.20.000004
N228N228YAacTac11B.1.617.20.000004
N228N228SaAcaGc11B.1.617.20.000004
N228N228del1aaCaa-11B.1.617.20.000004
N228N228NaaCaaT11B.1.6250.002353
N228N228SaAcaGc11B.1.6370.000073
N228N228NaaCaaT11B.1.960.018868
N228N228NaaCaaT11B.3.10.001658
N228N228NaaCaaT11C.20.016129
N228N228del2aACa--11C.350.000774
N228N228DAacGac11C.370.000116
N228N228delAAC---11C.37.10.002618
N228N228NaaCaaT11C.80.004464
N228N228NaaCaaT11N.20.038462
N228N228NaaCaaT11P.1.70.000319
N228N228SaAcaGc11P.1.70.000319
N228N228NaaCaaT11Q.40.000455
N228N228HAacCac11W.40.001351