CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 220 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N220A220VnonsyngCtgTt1746771746710.99996628931-28933

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N220A220VgCtgTt174671174677All0.033408
N220A220VgCtgTt7444874451B.1.1770.980301
N220A220VgCtgTt1299612996B.1.177.210.993806
N220A220VgCtgTt65206520B.1.177.120.989078
N220A220VgCtgTt59655966B.1.177.70.98335
N220A220VgCtgTt53475347B.1.177.860.980921
N220A220VgCtgTt52455245B.1.177.810.992995
N220A220VgCtgTt47014701B.1.177.40.992191
N220A220VgCtgTt44734473B.1.177.600.977064
N220A220VgCtgTt35353535B.1.177.570.993257
N220A220VgCtgTt25872587B.1.177.450.986275
N220A220VgCtgTt20722072B.1.177.820.989021
N220A220VgCtgTt18621862B.1.177.440.966269
N220A220VgCtgTt16321632B.1.177.540.989691
N220A220VgCtgTt15801580B.1.177.150.996845
N220A220VgCtgTt15021502B.1.177.650.999335
N220A220VgCtgTt14911491B.1.177.160.990698
N220A220VgCtgTt14831483B.1.177.560.989987
N220A220VgCtgTt14111411B.1.177.350.975121
N220A220VgCtgTt13741374B.1.177.770.997821
N220A220VgCtgTt13521352B.1.177.870.983988
N220A220VgCtgTt13271327B.1.177.80.998495
N220A220VgCtgTt12681268B.1.177.730.718007
N220A220VgCtgTt12141214B.1.177.170.996716
N220A220VgCtgTt11261126B.1.177.100.988586
N220A220VgCtgTt11051105B.1.177.420.988372
N220A220VgCtgTt10871087B.1.177.460.998163
N220A220VgCtgTt10261027B.10.009398
N220A220VgCtgTt10011001B.1.177.60.977539
N220A220VgCtgTt957957B.1.177.750.995838
N220A220VgCtgTt851851B.1.177.180.987239
N220A220VgCtgTt825825B.1.177.620.983313
N220A220VgCtgTt803803B.1.177.50.997516
N220A220VgCtgTt768768B.1.177.240.994819
N220A220VgCtgTt746746B.1.177.90.993342
N220A220VgCtgTt744744B.1.177.580.990679
N220A220VgCtgTt737737B.1.177.320.994602
N220A220VgCtgTt730730W.40.986486
N220A220VgCtgTt694694B.1.177.190.992847
N220A220VgCtgTt673673B.1.177.690.998516
N220A220VgCtgTt670670B.1.177.830.992593
N220A220VgCtgTt649649B.1.177.200.984825
N220A220VgCtgTt638638B.1.177.430.942393
N220A220VgCtgTt638638B.1.6200.603595
N220A220VgCtgTt606606B.1.177.330.996711
N220A220VgCtgTt589589B.1.177.111
N220A220VgCtgTt562562B.1.177.520.987698
N220A220VgCtgTt519519B.1.177.800.992352
N220A220VgCtgTt423423B.1.177.550.986014
N220A220VgCtgTt421421B.1.177.790.985948
N220A220VgCtgTt400400B.1.177.530.956938
N220A220VgCtgTt400400B.1.177.760.997506
N220A220VgCtgTt398398B.1.177.410.995
N220A220VgCtgTt390390B.1.177.300.979899
N220A220VgCtgTt367367B.1.177.630.991892
N220A220VgCtgTt346346Z.11
N220A220VgCtgTt318318B.1.177.480.99375
N220A220VgCtgTt303303B.1.177.230.980583
N220A220VgCtgTt294294B.1.177.720.99661
N220A220VgCtgTt260260P.40.988593
N220A220VgCtgTt259259U.31
N220A220VgCtgTt219219B.1.177.20.995455
N220A220VgCtgTt217217B.1.177.510.990868
N220A220VgCtgTt206206B.1.177.500.967136
N220A220VgCtgTt206206W.20.995169
N220A220VgCtgTt190190B.1.177.400.979381
N220A220VgCtgTt188188W.30.989474
N220A220VgCtgTt183183B.1.177.850.994565
N220A220VgCtgTt166166B.1.177.700.982249
N220A220VgCtgTt164164B.1.177.141
N220A220VgCtgTt160160B.1.10.002903
N220A220VgCtgTt150150B.1.177.841
N220A220VgCtgTt141141B.1.177.260.986014
N220A220VgCtgTt137137AA.10.992754
N220A220VgCtgTt133133B.1.177.280.985185
N220A220VgCtgTt131131B.1.177.31
N220A220VgCtgTt130130AA.21
N220A220VgCtgTt130130B.1.177.670.992366
N220A220VgCtgTt126126B.1.415.10.954545
N220A220VgCtgTt114114B.1.160.300.339286
N220A220VgCtgTt113113U.20.991228
N220A220VgCtgTt113113W.10.982609
N220A220VgCtgTt110110AA.41
N220A220VgCtgTt109109AA.71
N220A220VgCtgTt105105B.1.177.270.990566
N220A220VgCtgTt9999B.1.177.780.961165
N220A220VgCtgTt9898B.1.4231
N220A220VgCtgTt9797B.1.177.710.979798
N220A220VgCtgTt9696B.1.177.381
N220A220VgCtgTt8181B.1.177.881
N220A220VgCtgTt7979B.1.1.70.000071
N220A220VgCtgTt7878Y.11
N220A220VgCtgTt7777U.10.987179
N220A220VgCtgTt7676B.1.177.470.987013
N220A220VgCtgTt7070B.1.1600.002183
N220A220VgCtgTt6666B.1.177.250.985075
N220A220VgCtgTt6363B.1.177.390.969231
N220A220VgCtgTt6363B.1.177.680.954545
N220A220VgCtgTt6262AA.51
N220A220VgCtgTt6262AA.61
N220A220VgCtgTt6262B.1.177.361
N220A220VgCtgTt6262B.1.177.591
N220A220VgCtgTt5454B.1.5621
N220A220VgCtgTt5252B.1.2210.003694
N220A220VgCtgTt5151B.1.177.740.772727
N220A220VgCtgTt4545AA.81
N220A220VgCtgTt4444V.11
N220A220VgCtgTt4242B.1.617.20.000158
N220A220VgCtgTt4141B.1.177.891
N220A220VgCtgTt3737AA.31
N220A220VgCtgTt3737B.1.177.371
N220A220VgCtgTt3434B0.004346
N220A220VgCtgTt3333B.1.177.310.37931
N220A220VgCtgTt3030B.1.160.200.267857
N220A220VgCtgTt3030V.20.967742
N220A220VgCtgTt2626B.1.177.490.962963
N220A220VgCtgTt2525B.1.2580.001664
N220A220VgCtgTt2424AY.540.002288
N220A220VgCtgTt2424B.1.177.661
N220A220VgCtgTt2424B.1.360.003502
N220A220VgCtgTt2323B.1.177.611
N220A220VgCtgTt2121B.1.6090.010067
N220A220VgCtgTt1919B.1.177.341
N220A220VgCtgTt1717AY.40.000026
N220A220VgCtgTt1515B.1.177.291
N220A220VgCtgTt1313B.1.1.2940.016456
N220A220VgCtgTt1313B.4.80.928571
N220A220VgCtgTt1212B.1.1.390.006116
N220A220VgCtgTt1212B.1.36.390.026608
N220A220VgCtgTt1111B.1.177.641
N220A220VgCtgTt99AY.200.00035
N220A220VgCtgTt77B.1.1.370.00135
N220A220VgCtgTt77B.1.160.320.030043
N220A220VgCtgTt77B.1.20.000062
N220A220VgCtgTt77B.4.10.132075
N220A220VgCtgTt66AY.1030.000037
N220A220VgCtgTt66B.1.416.10.009375
N220A220VgCtgTt55B.1.3890.00501
N220A220VgCtgTt55D.20.000375
N220A220VgCtgTt44AY.260.000113
N220A220VgCtgTt44AY.430.000018
N220A220VgCtgTt44B.1.1.3110.001433
N220A220VgCtgTt44B.1.1110.0047
N220A220VgCtgTt44B.1.1470.003023
N220A220VgCtgTt44B.1.160.280.011696
N220A220VgCtgTt44B.1.2220.006768
N220A220VgCtgTt44B.1.5090.003463
N220A220VgCtgTt33AY.440.000018
N220A220VgCtgTt33AY.50.000062
N220A220VgCtgTt33B.1.1.4120.022901
N220A220VgCtgTt33B.1.1.5190.000119
N220A220VgCtgTt33B.1.3510.000089
N220A220VgCtgTt33B.1.3620.004622
N220A220VgCtgTt33B.1.3660.014634
N220A220VgCtgTt33B.1.5760.00272
N220A220VgCtgTt33B.1.780.025641
N220A220VgCtgTt33C.300.005181
N220A220VgCtgTt22AY.290.000032
N220A220VgCtgTt22AY.420.00008
N220A220VgCtgTt22AY.46.60.000144
N220A220VgCtgTt22B.1.1.2650.006309
N220A220VgCtgTt22B.1.1.3720.001377
N220A220VgCtgTt22B.1.1.5210.010695
N220A220VgCtgTt22B.1.1570.00597
N220A220VgCtgTt22B.1.160.100.016129
N220A220VgCtgTt22B.1.1950.01005
N220A220VgCtgTt22B.1.2360.004107
N220A220VgCtgTt22B.1.3750.001639
N220A220VgCtgTt22B.1.4620.014493
N220A220VgCtgTt22B.1.4670.08
N220A220VgCtgTt22B.1.5260.000047
N220A220VgCtgTt22B.1.5300.014286
N220A220VgCtgTt22B.1.5640.000852
N220A220VgCtgTt22B.1.5960.000174
N220A220VgCtgTt22P.1.120.000968
N220A220VgCtgTt11A0.000387
N220A220VgCtgTt11A.20.000662
N220A220VgCtgTt11A.2.30.004739
N220A220VgCtgTt11A.210.00277
N220A220VgCtgTt11AD.20.000219
N220A220VgCtgTt11AN.10.02
N220A220VgCtgTt11AT.10.005128
N220A220VgCtgTt11AY.1000.000046
N220A220VgCtgTt11AY.1190.000035
N220A220VgCtgTt11AY.230.00007
N220A220VgCtgTt11AY.270.000065
N220A220VgCtgTt11AY.30.00001
N220A220VgCtgTt11AY.460.000104
N220A220VgCtgTt11AY.750.000056
N220A220VgCtgTt11AY.800.001129
N220A220VgCtgTt11B.1.1.1610.003534
N220A220VgCtgTt11B.1.1.1870.00885
N220A220VgCtgTt11B.1.1.1890.001513
N220A220VgCtgTt11B.1.1.2140.000055
N220A220VgCtgTt11B.1.1.250.000569
N220A220VgCtgTt11B.1.1.2770.000759
N220A220VgCtgTt11B.1.1.3070.002532
N220A220VgCtgTt11B.1.1.3150.008475
N220A220VgCtgTt11B.1.1.3850.004464
N220A220VgCtgTt11B.1.1.4200.001006
N220A220VgCtgTt11B.1.1.5260.003546
N220A220VgCtgTt11B.1.1.700.000341
N220A220VgCtgTt11B.1.1040.00369
N220A220VgCtgTt11B.1.160.120.00641
N220A220VgCtgTt11B.1.160.150.00495
N220A220VgCtgTt11B.1.160.160.000929
N220A220VgCtgTt11B.1.160.260.002421
N220A220VgCtgTt11B.1.221.40.004167
N220A220VgCtgTt11B.1.2340.000132
N220A220VgCtgTt11B.1.258.160.001637
N220A220VgCtgTt11B.1.258.170.000104
N220A220VgCtgTt11B.1.2600.003344
N220A220VgCtgTt11B.1.2810.021739
N220A220VgCtgTt11B.1.2910.019231
N220A220VgCtgTt11B.1.36.220.001208
N220A220VgCtgTt11B.1.36.90.003215
N220A220VgCtgTt11B.1.3910.001127
N220A220VgCtgTt11B.1.4290.000024
N220A220VgCtgTt11B.1.4590.004082
N220A220VgCtgTt11B.1.4660.023256
N220A220VgCtgTt11B.1.4680.005714
N220A220VgCtgTt11B.1.4700.001404
N220A220VgCtgTt11B.1.4730.019231
N220A220VgCtgTt11B.1.4990.00105
N220A220VgCtgTt11B.1.5400.009709
N220A220VgCtgTt11B.1.5880.00091
N220A220VgCtgTt11B.1.5900.004545
N220A220VgCtgTt11B.1.5990.00365
N220A220VgCtgTt11B.1.6100.003546
N220A220VgCtgTt11B.1.617.10.000129
N220A220VgCtgTt11B.1.6230.000536
N220A220VgCtgTt11B.40.002208
N220A220VgCtgTt11B.550.00295
N220A220VgCtgTt11C.370.000116
N220A220VgCtgTt11P.10.000016
N220A220VgCtgTt11P.1.100.000269
N220A220VgCtgTt11P.1.10.10.00813
N220A220VgCtgTt11P.20.000187
N220A220VgCtgTt11Q.10.000126
N220A220VgCtgTt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.