CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 218 | A218S | nonsyn | Gct | Tct | 2376 | 2374 | 0.999158 | 28925-28927 | |
N | 218 | A218S | nonsyn | GcT | TcC | 2376 | 1 | 0.000420875 | 28925-28927 | |
N | 218 | A218S | nonsyn | GcT | TcG | 2376 | 1 | 0.000420875 | 28925-28927 | |
N | 218 | A218T | nonsyn | Gct | Act | 572 | 572 | 1 | 28925-28927 | |
N | 218 | A218A | syn | gcT | gcC | 501 | 421 | 0.840319 | 28925-28927 | |
N | 218 | A218A | syn | gcT | gcG | 501 | 43 | 0.0858283 | 28925-28927 | |
N | 218 | A218A | syn | gcT | gcA | 501 | 37 | 0.0738523 | 28925-28927 | |
N | 218 | A218V | nonsyn | gCt | gTt | 223 | 221 | 0.991031 | 28925-28927 | |
N | 218 | A218V | nonsyn | gCT | gTG | 223 | 2 | 0.00896861 | 28925-28927 | |
N | 218 | A218del | del | GCT | --- | 58 | 58 | 1 | 28925-28927 | |
N | 218 | A218P | nonsyn | Gct | Cct | 20 | 20 | 1 | 28925-28927 | |
N | 218 | A218G | nonsyn | gCt | gGt | 20 | 18 | 0.9 | 28925-28927 | |
N | 218 | A218G | nonsyn | gCT | gGG | 20 | 1 | 0.05 | 28925-28927 | |
N | 218 | A218G | nonsyn | gCT | gGC | 20 | 1 | 0.05 | 28925-28927 | |
N | 218 | A218D | nonsyn | gCt | gAt | 6 | 6 | 1 | 28925-28927 | |
N | 218 | A218del2 | del | GCt | --t | 4 | 3 | 0.75 | 28925-28927 | |
N | 218 | A218C | nonsyn | GCt | TGt | 4 | 3 | 0.75 | 28925-28927 | |
N | 218 | A218del1 | del | gcT | gc- | 4 | 2 | 0.5 | 28925-28927 | |
N | 218 | A218del1 | del | Gct | -ct | 4 | 2 | 0.5 | 28925-28927 | |
N | 218 | A218C | nonsyn | GCT | TGC | 4 | 1 | 0.25 | 28925-28927 | |
N | 218 | A218del2 | del | gCT | g-- | 4 | 1 | 0.25 | 28925-28927 | |
N | 218 | A218F | nonsyn | GCt | TTt | 2 | 2 | 1 | 28925-28927 | |
N | 218 | A218W | nonsyn | GCT | TGG | 1 | 1 | 1 | 28925-28927 | |
N | 218 | A218L | nonsyn | GCT | TTG | 1 | 1 | 1 | 28925-28927 | |
N | 218 | A218K | nonsyn | GCT | AAA | 1 | 1 | 1 | 28925-28927 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 218 | A218S | Gct | Tct | 2374 | 2376 | All | 0.000454 |
N | 218 | A218S | GcT | TcG | 1 | 2376 | All | 0 |
N | 218 | A218S | GcT | TcC | 1 | 2376 | All | 0 |
N | 218 | A218T | Gct | Act | 572 | 572 | All | 0.000109 |
N | 218 | A218S | Gct | Tct | 503 | 503 | B.1.1.7 | 0.00045 |
N | 218 | A218A | gcT | gcC | 421 | 501 | All | 0.000081 |
N | 218 | A218A | gcT | gcG | 43 | 501 | All | 0.000008 |
N | 218 | A218A | gcT | gcA | 37 | 501 | All | 0.000007 |
N | 218 | A218S | Gct | Tct | 395 | 395 | B.1.617.2 | 0.001487 |
N | 218 | A218S | Gct | Tct | 358 | 358 | AY.4 | 0.000557 |
N | 218 | A218V | gCt | gTt | 221 | 223 | All | 0.000042 |
N | 218 | A218V | gCT | gTG | 2 | 223 | All | 0 |
N | 218 | A218S | Gct | Tct | 209 | 209 | AY.103 | 0.001298 |
N | 218 | A218S | Gct | Tct | 204 | 204 | AY.120 | 0.007584 |
N | 218 | A218T | Gct | Act | 138 | 138 | Q.3 | 0.020015 |
N | 218 | A218T | Gct | Act | 135 | 135 | B.1.1.7 | 0.000121 |
N | 218 | A218S | Gct | Tct | 130 | 130 | AY.43 | 0.000576 |
N | 218 | A218A | gcT | gcC | 98 | 123 | B.1.1.7 | 0.000088 |
N | 218 | A218A | gcT | gcG | 16 | 123 | B.1.1.7 | 0.000014 |
N | 218 | A218A | gcT | gcA | 9 | 123 | B.1.1.7 | 0.000008 |
N | 218 | A218A | gcT | gcC | 104 | 113 | B.1.617.2 | 0.000392 |
N | 218 | A218A | gcT | gcG | 7 | 113 | B.1.617.2 | 0.000026 |
N | 218 | A218A | gcT | gcA | 2 | 113 | B.1.617.2 | 0.000008 |
N | 218 | A218S | Gct | Tct | 112 | 112 | B.1.1.351 | 0.312849 |
N | 218 | A218T | Gct | Act | 96 | 96 | AY.4 | 0.000149 |
N | 218 | A218V | gCt | gTt | 66 | 66 | B.1.629 | 0.88 |
N | 218 | A218del | GCT | --- | 58 | 58 | All | 0.000011 |
N | 218 | A218S | Gct | Tct | 42 | 42 | AY.29 | 0.000662 |
N | 218 | A218S | Gct | Tct | 40 | 40 | AY.39 | 0.000988 |
N | 218 | A218T | Gct | Act | 38 | 38 | B.1.617.2 | 0.000143 |
N | 218 | A218S | Gct | Tct | 37 | 37 | AY.98.1 | 0.001792 |
N | 218 | A218S | Gct | Tct | 30 | 30 | AY.25 | 0.00018 |
N | 218 | A218S | Gct | Tct | 29 | 29 | AY.4.2 | 0.000629 |
N | 218 | A218A | gcT | gcC | 29 | 29 | AY.59 | 0.01536 |
N | 218 | A218T | Gct | Act | 28 | 28 | AD.2 | 0.006131 |
N | 218 | A218A | gcT | gcC | 24 | 24 | AY.4 | 0.000037 |
N | 218 | A218S | Gct | Tct | 24 | 24 | AY.6 | 0.000987 |
N | 218 | A218S | Gct | Tct | 22 | 22 | AY.102 | 0.000583 |
N | 218 | A218A | gcT | gcC | 22 | 22 | B.1.139 | 0.016129 |
N | 218 | A218P | Gct | Cct | 20 | 20 | All | 0.000004 |
N | 218 | A218G | gCt | gGt | 18 | 20 | All | 0.000003 |
N | 218 | A218G | gCT | gGC | 1 | 20 | All | 0 |
N | 218 | A218G | gCT | gGG | 1 | 20 | All | 0 |
N | 218 | A218S | Gct | Tct | 20 | 20 | AY.5 | 0.000413 |
N | 218 | A218V | gCt | gTt | 19 | 19 | B.1.1.519 | 0.000755 |
N | 218 | A218A | gcT | gcC | 19 | 19 | B.1.375 | 0.015574 |
N | 218 | A218V | gCt | gTt | 19 | 19 | B.1.617.2 | 0.000072 |
N | 218 | A218A | gcT | gcC | 14 | 17 | AY.43 | 0.000062 |
N | 218 | A218A | gcT | gcG | 3 | 17 | AY.43 | 0.000013 |
N | 218 | A218S | Gct | Tct | 17 | 17 | AY.44 | 0.000103 |
N | 218 | A218A | gcT | gcC | 15 | 17 | B.1.2 | 0.000132 |
N | 218 | A218A | gcT | gcG | 2 | 17 | B.1.2 | 0.000018 |
N | 218 | A218V | gCt | gTt | 15 | 15 | B.1.1.7 | 0.000013 |
N | 218 | A218T | Gct | Act | 15 | 15 | B.1.177.4 | 0.003166 |
N | 218 | A218S | Gct | Tct | 14 | 14 | AY.5.4 | 0.003874 |
N | 218 | A218T | Gct | Act | 13 | 13 | AY.102 | 0.000345 |
N | 218 | A218T | Gct | Act | 13 | 13 | AY.29 | 0.000205 |
N | 218 | A218S | Gct | Tct | 11 | 11 | AY.3.1 | 0.000938 |
N | 218 | A218S | Gct | Tct | 11 | 11 | AY.41 | 0.003233 |
N | 218 | A218S | Gct | Tct | 10 | 10 | AY.98 | 0.00079 |
N | 218 | A218G | gCt | gGt | 9 | 9 | AY.116.1 | 0.002803 |
N | 218 | A218S | Gct | Tct | 9 | 9 | AY.118 | 0.000564 |
N | 218 | A218A | gcT | gcA | 9 | 9 | AY.29 | 0.000142 |
N | 218 | A218T | Gct | Act | 9 | 9 | B.1.177 | 0.000119 |
N | 218 | A218S | Gct | Tct | 8 | 8 | AY.119 | 0.000282 |
N | 218 | A218S | Gct | Tct | 8 | 8 | AY.3 | 0.00008 |
N | 218 | A218S | Gct | Tct | 8 | 8 | AY.42 | 0.000322 |
N | 218 | A218S | Gct | Tct | 8 | 8 | B.1 | 0.000073 |
N | 218 | A218A | gcT | gcA | 8 | 8 | B.1.1.317 | 0.003294 |
N | 218 | A218V | gCt | gTt | 7 | 7 | B.1.1 | 0.000127 |
N | 218 | A218T | Gct | Act | 7 | 7 | B.1.1.39 | 0.003568 |
N | 218 | A218P | Gct | Cct | 7 | 7 | B.1.177.4 | 0.001477 |
N | 218 | A218A | gcT | gcC | 7 | 7 | B.1.214 | 0.025641 |
N | 218 | A218A | gcT | gcC | 7 | 7 | B.1.427 | 0.000353 |
N | 218 | A218T | Gct | Act | 7 | 7 | P.1 | 0.00011 |
N | 218 | A218D | gCt | gAt | 6 | 6 | All | 0.000001 |
N | 218 | A218S | Gct | Tct | 6 | 6 | AY.111 | 0.001099 |
N | 218 | A218S | Gct | Tct | 6 | 6 | AY.121 | 0.000812 |
N | 218 | A218S | Gct | Tct | 6 | 6 | AY.20 | 0.000233 |
N | 218 | A218T | Gct | Act | 6 | 6 | AY.25 | 0.000036 |
N | 218 | A218A | gcT | gcC | 5 | 6 | AY.3 | 0.00005 |
N | 218 | A218A | gcT | gcG | 1 | 6 | AY.3 | 0.00001 |
N | 218 | A218V | gCt | gTt | 6 | 6 | AY.4 | 0.000009 |
N | 218 | A218V | gCt | gTt | 6 | 6 | AY.93 | 0.001638 |
N | 218 | A218V | gCt | gTt | 6 | 6 | B.1 | 0.000055 |
N | 218 | A218del | GCT | --- | 6 | 6 | B.1 | 0.000055 |
N | 218 | A218A | gcT | gcC | 5 | 6 | B.1 | 0.000046 |
N | 218 | A218A | gcT | gcG | 1 | 6 | B.1 | 0.000009 |
N | 218 | A218S | Gct | Tct | 6 | 6 | B.1.1 | 0.000109 |
N | 218 | A218S | Gct | Tct | 6 | 6 | B.1.427 | 0.000303 |
N | 218 | A218V | gCt | gTt | 6 | 6 | B.1.526 | 0.000141 |
N | 218 | A218T | Gct | Act | 5 | 5 | AY.117 | 0.000423 |
N | 218 | A218A | gcT | gcC | 5 | 5 | AY.14 | 0.00044 |
N | 218 | A218del | GCT | --- | 5 | 5 | AY.3 | 0.00005 |
N | 218 | A218T | Gct | Act | 5 | 5 | AY.39 | 0.000124 |
N | 218 | A218T | Gct | Act | 5 | 5 | AY.44 | 0.00003 |
N | 218 | A218del | GCT | --- | 5 | 5 | B.1.1.7 | 0.000004 |
N | 218 | A218V | gCt | gTt | 5 | 5 | B.1.110.3 | 0.003592 |
N | 218 | A218V | gCt | gTt | 5 | 5 | B.1.2 | 0.000044 |
N | 218 | A218A | gcT | gcC | 5 | 5 | B.1.574 | 0.010753 |
N | 218 | A218V | gCt | gTt | 5 | 5 | P.1 | 0.000079 |
N | 218 | A218A | gcT | gcC | 4 | 5 | P.1 | 0.000063 |
N | 218 | A218A | gcT | gcG | 1 | 5 | P.1 | 0.000016 |
N | 218 | A218V | gCt | gTt | 4 | 4 | AD.2 | 0.000876 |
N | 218 | A218del2 | GCt | --t | 3 | 4 | All | 0.000001 |
N | 218 | A218C | GCt | TGt | 3 | 4 | All | 0.000001 |
N | 218 | A218del1 | Gct | -ct | 2 | 4 | All | 0 |
N | 218 | A218del1 | gcT | gc- | 2 | 4 | All | 0 |
N | 218 | A218C | GCT | TGC | 1 | 4 | All | 0 |
N | 218 | A218del2 | gCT | g-- | 1 | 4 | All | 0 |
N | 218 | A218S | Gct | Tct | 4 | 4 | AY.100 | 0.000184 |
N | 218 | A218del | GCT | --- | 4 | 4 | AY.25 | 0.000024 |
N | 218 | A218T | Gct | Act | 4 | 4 | AY.3 | 0.00004 |
N | 218 | A218A | gcT | gcC | 3 | 4 | AY.44 | 0.000018 |
N | 218 | A218A | gcT | gcG | 1 | 4 | AY.44 | 0.000006 |
N | 218 | A218T | Gct | Act | 4 | 4 | B.1.2 | 0.000035 |
N | 218 | A218S | Gct | Tct | 4 | 4 | B.1.526 | 0.000094 |
N | 218 | A218A | gcT | gcC | 3 | 3 | AY.120 | 0.000112 |
N | 218 | A218del | GCT | --- | 3 | 3 | AY.21 | 0.005693 |
N | 218 | A218S | Gct | Tct | 3 | 3 | AY.23 | 0.000209 |
N | 218 | A218P | Gct | Cct | 3 | 3 | AY.4 | 0.000005 |
N | 218 | A218del | GCT | --- | 3 | 3 | AY.4 | 0.000005 |
N | 218 | A218del | GCT | --- | 3 | 3 | AY.43 | 0.000013 |
N | 218 | A218T | Gct | Act | 3 | 3 | AY.46 | 0.000312 |
N | 218 | A218T | Gct | Act | 3 | 3 | B.1 | 0.000027 |
N | 218 | A218A | gcT | gcA | 2 | 3 | B.1.1 | 0.000036 |
N | 218 | A218A | gcT | gcC | 1 | 3 | B.1.1 | 0.000018 |
N | 218 | A218S | Gct | Tct | 3 | 3 | B.1.1.214 | 0.000166 |
N | 218 | A218T | Gct | Act | 3 | 3 | B.1.177.41 | 0.0075 |
N | 218 | A218S | Gct | Tct | 2 | 3 | B.1.221 | 0.000142 |
N | 218 | A218S | GcT | TcC | 1 | 3 | B.1.221 | 0.000071 |
N | 218 | A218S | Gct | Tct | 3 | 3 | B.1.221.3 | 0.0025 |
N | 218 | A218A | gcT | gcC | 3 | 3 | B.1.36 | 0.000438 |
N | 218 | A218T | Gct | Act | 3 | 3 | B.1.429 | 0.000071 |
N | 218 | A218A | gcT | gcC | 2 | 3 | B.1.526 | 0.000047 |
N | 218 | A218A | gcT | gcG | 1 | 3 | B.1.526 | 0.000024 |
N | 218 | A218A | gcT | gcC | 3 | 3 | C.36.3 | 0.001702 |
N | 218 | A218S | Gct | Tct | 3 | 3 | P.1 | 0.000047 |
N | 218 | A218V | gCt | gTt | 3 | 3 | Q.3 | 0.000435 |
N | 218 | A218S | Gct | Tct | 3 | 3 | Q.7 | 0.003333 |
N | 218 | A218T | Gct | Act | 3 | 3 | R.1 | 0.00027 |
N | 218 | A218G | gCt | gGt | 1 | 2 | 0.055556 | |
N | 218 | A218G | gCT | gGG | 1 | 2 | 0.055556 | |
N | 218 | A218S | GcT | TcG | 1 | 2 | 0.055556 | |
N | 218 | A218S | Gct | Tct | 1 | 2 | 0.055556 | |
N | 218 | A218V | gCt | gTt | 2 | 2 | A.1 | 0.000564 |
N | 218 | A218F | GCt | TTt | 2 | 2 | All | 0 |
N | 218 | A218del | GCT | --- | 2 | 2 | AY.100 | 0.000092 |
N | 218 | A218del2 | GCt | --t | 2 | 2 | AY.100 | 0.000092 |
N | 218 | A218A | gcT | gcG | 1 | 2 | AY.102 | 0.000027 |
N | 218 | A218A | gcT | gcC | 1 | 2 | AY.102 | 0.000027 |
N | 218 | A218T | Gct | Act | 2 | 2 | AY.103 | 0.000012 |
N | 218 | A218A | gcT | gcC | 1 | 2 | AY.103 | 0.000006 |
N | 218 | A218A | gcT | gcA | 1 | 2 | AY.103 | 0.000006 |
N | 218 | A218S | Gct | Tct | 2 | 2 | AY.117 | 0.000169 |
N | 218 | A218A | gcT | gcG | 1 | 2 | AY.25 | 0.000006 |
N | 218 | A218A | gcT | gcC | 1 | 2 | AY.25 | 0.000006 |
N | 218 | A218del | GCT | --- | 2 | 2 | AY.3.1 | 0.000171 |
N | 218 | A218A | gcT | gcC | 1 | 2 | AY.33 | 0.000067 |
N | 218 | A218A | gcT | gcA | 1 | 2 | AY.33 | 0.000067 |
N | 218 | A218V | gCt | gTt | 2 | 2 | AY.39 | 0.000049 |
N | 218 | A218del | GCT | --- | 2 | 2 | AY.39 | 0.000049 |
N | 218 | A218del | GCT | --- | 2 | 2 | AY.44 | 0.000012 |
N | 218 | A218V | gCt | gTt | 2 | 2 | AY.44 | 0.000012 |
N | 218 | A218S | Gct | Tct | 2 | 2 | AY.46 | 0.000208 |
N | 218 | A218S | Gct | Tct | 2 | 2 | AY.47 | 0.000062 |
N | 218 | A218del | GCT | --- | 2 | 2 | AY.50 | 0.001599 |
N | 218 | A218A | gcT | gcC | 2 | 2 | AY.67 | 0.000929 |
N | 218 | A218T | Gct | Act | 2 | 2 | AY.98 | 0.000158 |
N | 218 | A218S | Gct | Tct | 2 | 2 | AY.99.2 | 0.000184 |
N | 218 | A218T | Gct | Act | 2 | 2 | B.1.1 | 0.000036 |
N | 218 | A218S | Gct | Tct | 2 | 2 | B.1.1.243 | 0.008163 |
N | 218 | A218P | Gct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
N | 218 | A218G | gCt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
N | 218 | A218A | gcT | gcC | 2 | 2 | B.1.160 | 0.000062 |
N | 218 | A218V | gCt | gTt | 2 | 2 | B.1.177 | 0.000026 |
N | 218 | A218A | gcT | gcA | 1 | 2 | B.1.177 | 0.000013 |
N | 218 | A218A | gcT | gcC | 1 | 2 | B.1.177 | 0.000013 |
N | 218 | A218S | Gct | Tct | 2 | 2 | B.1.2 | 0.000018 |
N | 218 | A218C | GCT | TGC | 1 | 2 | B.1.221 | 0.000071 |
N | 218 | A218G | gCt | gGt | 1 | 2 | B.1.221 | 0.000071 |
N | 218 | A218G | gCT | gGC | 1 | 2 | B.1.221 | 0.000071 |
N | 218 | A218C | GCt | TGt | 1 | 2 | B.1.221 | 0.000071 |
N | 218 | A218V | gCt | gTt | 2 | 2 | B.1.232 | 0.001075 |
N | 218 | A218T | Gct | Act | 2 | 2 | B.1.240 | 0.000431 |
N | 218 | A218S | Gct | Tct | 2 | 2 | B.1.243 | 0.000139 |
N | 218 | A218A | gcT | gcC | 2 | 2 | B.1.243 | 0.000139 |
N | 218 | A218T | Gct | Act | 2 | 2 | B.1.243.2 | 0.028986 |
N | 218 | A218A | gcT | gcC | 2 | 2 | B.1.265 | 0.002541 |
N | 218 | A218V | gCt | gTt | 2 | 2 | B.1.320 | 0.002491 |
N | 218 | A218T | Gct | Act | 2 | 2 | B.1.324 | 0.00321 |
N | 218 | A218S | Gct | Tct | 2 | 2 | B.1.349 | 0.00143 |
N | 218 | A218del | GCT | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 218 | A218A | gcT | gcC | 2 | 2 | B.1.429 | 0.000047 |
N | 218 | A218V | gCt | gTt | 2 | 2 | B.1.429 | 0.000047 |
N | 218 | A218V | gCt | gTt | 2 | 2 | B.1.453 | 0.006472 |
N | 218 | A218T | Gct | Act | 2 | 2 | B.1.526 | 0.000047 |
N | 218 | A218S | Gct | Tct | 2 | 2 | B.1.581 | 0.018868 |
N | 218 | A218A | gcT | gcC | 2 | 2 | B.1.617.1 | 0.000258 |
N | 218 | A218del | GCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
N | 218 | A218del2 | gCT | g-- | 1 | 2 | B.1.617.2 | 0.000004 |
N | 218 | A218del2 | GCt | --t | 1 | 2 | B.1.617.2 | 0.000004 |
N | 218 | A218V | gCt | gTt | 2 | 2 | B.1.619.1 | 0.001283 |
N | 218 | A218S | Gct | Tct | 2 | 2 | D.2 | 0.00015 |
N | 218 | A218V | gCt | gTt | 2 | 2 | P.5 | 0.027397 |
N | 218 | A218C | GCt | TGt | 1 | 1 | 0.055556 | |
N | 218 | A218W | GCT | TGG | 1 | 1 | 0.055556 | |
N | 218 | A218A | gcT | gcG | 1 | 1 | 0.055556 | |
N | 218 | A218D | gCt | gAt | 1 | 1 | A | 0.000387 |
N | 218 | A218A | gcT | gcC | 1 | 1 | A.1 | 0.000282 |
N | 218 | A218D | gCt | gAt | 1 | 1 | A.2.4 | 0.003367 |
N | 218 | A218T | Gct | Act | 1 | 1 | A.2.4 | 0.003367 |
N | 218 | A218S | Gct | Tct | 1 | 1 | A.23.1 | 0.000704 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AD.2 | 0.000219 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AE.8 | 0.000489 |
N | 218 | A218A | gcT | gcG | 1 | 1 | AE.8 | 0.000489 |
N | 218 | A218K | GCT | AAA | 1 | 1 | All | 0 |
N | 218 | A218L | GCT | TTG | 1 | 1 | All | 0 |
N | 218 | A218W | GCT | TGG | 1 | 1 | All | 0 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.100 | 0.000046 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.101 | 0.00049 |
N | 218 | A218del | GCT | --- | 1 | 1 | AY.102 | 0.000027 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.102 | 0.000027 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.103 | 0.000006 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.105 | 0.000643 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.106 | 0.000335 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.108 | 0.001103 |
N | 218 | A218D | gCt | gAt | 1 | 1 | AY.113 | 0.000142 |
N | 218 | A218P | Gct | Cct | 1 | 1 | AY.113 | 0.000142 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.116 | 0.000287 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.117 | 0.000085 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.119 | 0.000035 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.12 | 0.000316 |
N | 218 | A218G | gCt | gGt | 1 | 1 | AY.12 | 0.000316 |
N | 218 | A218del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
N | 218 | A218del | GCT | --- | 1 | 1 | AY.120.1 | 0.000321 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 218 | A218del | GCT | --- | 1 | 1 | AY.16.1 | 0.00047 |
N | 218 | A218G | gCt | gGt | 1 | 1 | AY.20 | 0.000039 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.20 | 0.000039 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.20 | 0.000039 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.23 | 0.00007 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.25 | 0.000006 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.26 | 0.000028 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.29.1 | 0.000221 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.3 | 0.00001 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
N | 218 | A218P | Gct | Cct | 1 | 1 | AY.33 | 0.000067 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.33 | 0.000067 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.34 | 0.000097 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.37 | 0.000316 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.39 | 0.000025 |
N | 218 | A218A | gcT | gcG | 1 | 1 | AY.39.1 | 0.00004 |
N | 218 | A218G | gCt | gGt | 1 | 1 | AY.4 | 0.000002 |
N | 218 | A218D | gCt | gAt | 1 | 1 | AY.4 | 0.000002 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.4.2 | 0.000022 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.4.2 | 0.000022 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.4.4 | 0.000409 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.4.5 | 0.000107 |
N | 218 | A218del | GCT | --- | 1 | 1 | AY.40 | 0.000964 |
N | 218 | A218del1 | Gct | -ct | 1 | 1 | AY.42 | 0.00004 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.43 | 0.000004 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.43 | 0.000004 |
N | 218 | A218P | Gct | Cct | 1 | 1 | AY.43 | 0.000004 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.46.3 | 0.000934 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.46.4 | 0.000165 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
N | 218 | A218P | Gct | Cct | 1 | 1 | AY.46.6 | 0.000072 |
N | 218 | A218del1 | gcT | gc- | 1 | 1 | AY.48 | 0.000465 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.5 | 0.000021 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.5.1 | 0.003759 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.52 | 0.000814 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.54 | 0.000095 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.57 | 0.000656 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.57 | 0.000656 |
N | 218 | A218A | gcT | gcA | 1 | 1 | AY.57 | 0.000656 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.6 | 0.000041 |
N | 218 | A218P | Gct | Cct | 1 | 1 | AY.6 | 0.000041 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.61 | 0.000105 |
N | 218 | A218A | gcT | gcG | 1 | 1 | AY.62 | 0.000436 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.64 | 0.000595 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.67 | 0.000464 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.7.1 | 0.000113 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.74 | 0.000116 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.74 | 0.000116 |
N | 218 | A218del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
N | 218 | A218A | gcT | gcG | 1 | 1 | AY.78 | 0.001541 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.84 | 0.000437 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.85 | 0.000427 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.85 | 0.000427 |
N | 218 | A218T | Gct | Act | 1 | 1 | AY.89 | 0.004902 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
N | 218 | A218A | gcT | gcG | 1 | 1 | AY.9.2 | 0.000037 |
N | 218 | A218A | gcT | gcC | 1 | 1 | AY.92 | 0.000287 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.94 | 0.000443 |
N | 218 | A218S | Gct | Tct | 1 | 1 | AY.99.1 | 0.001553 |
N | 218 | A218del | GCT | --- | 1 | 1 | AY.99.2 | 0.000092 |
N | 218 | A218V | gCt | gTt | 1 | 1 | AZ.1 | 0.000867 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B | 0.000128 |
N | 218 | A218G | gCt | gGt | 1 | 1 | B.1 | 0.000009 |
N | 218 | A218D | gCt | gAt | 1 | 1 | B.1 | 0.000009 |
N | 218 | A218P | Gct | Cct | 1 | 1 | B.1.1 | 0.000018 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.1.10 | 0.001115 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.1.117 | 0.009709 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.1.209 | 0.008929 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.1.277 | 0.000759 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.1.288 | 0.001916 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.1.291 | 0.000742 |
N | 218 | A218del | GCT | --- | 1 | 1 | B.1.1.303 | 0.002762 |
N | 218 | A218V | gCT | gTG | 1 | 1 | B.1.1.306 | 0.000438 |
N | 218 | A218T | Gct | Act | 1 | 1 | B.1.1.306 | 0.000438 |
N | 218 | A218del | GCT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.1.33 | 0.000421 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.1.37 | 0.000193 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.1.519 | 0.00004 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.1.528 | 0.004808 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.1.61 | 0.008772 |
N | 218 | A218F | GCt | TTt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 218 | A218A | gcT | gcA | 1 | 1 | B.1.1.70 | 0.000341 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.126 | 0.001276 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.157 | 0.002985 |
N | 218 | A218del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 218 | A218F | GCt | TTt | 1 | 1 | B.1.177 | 0.000013 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.177 | 0.000013 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.177.21 | 0.000076 |
N | 218 | A218del | GCT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.177.4 | 0.000211 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.177.57 | 0.000281 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.177.58 | 0.001332 |
N | 218 | A218del1 | Gct | -ct | 1 | 1 | B.1.177.63 | 0.002703 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.177.69 | 0.001484 |
N | 218 | A218del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 218 | A218P | Gct | Cct | 1 | 1 | B.1.206 | 0.000816 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.218 | 0.005155 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.221 | 0.000071 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.234 | 0.000132 |
N | 218 | A218T | Gct | Act | 1 | 1 | B.1.298 | 0.002114 |
N | 218 | A218A | gcT | gcA | 1 | 1 | B.1.320 | 0.001245 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.351 | 0.00003 |
N | 218 | A218V | gCT | gTG | 1 | 1 | B.1.351 | 0.00003 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.36.8 | 0.001 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.396 | 0.000706 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.427 | 0.00005 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
N | 218 | A218T | Gct | Act | 1 | 1 | B.1.456 | 0.003268 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.549 | 0.007194 |
N | 218 | A218L | GCT | TTG | 1 | 1 | B.1.560 | 0.00463 |
N | 218 | A218S | Gct | Tct | 1 | 1 | B.1.561 | 0.000397 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.595 | 0.000261 |
N | 218 | A218del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 218 | A218del1 | gcT | gc- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 218 | A218del | GCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 218 | A218C | GCt | TGt | 1 | 1 | B.1.617.1 | 0.000129 |
N | 218 | A218D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
N | 218 | A218G | gCt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
N | 218 | A218P | Gct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
N | 218 | A218K | GCT | AAA | 1 | 1 | B.1.617.2 | 0.000004 |
N | 218 | A218A | gcT | gcG | 1 | 1 | B.1.621 | 0.000089 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.1.621 | 0.000089 |
N | 218 | A218A | gcT | gcC | 1 | 1 | B.1.621.1 | 0.000506 |
N | 218 | A218V | gCt | gTt | 1 | 1 | B.23 | 0.002924 |
N | 218 | A218A | gcT | gcA | 1 | 1 | C.35 | 0.000774 |
N | 218 | A218S | Gct | Tct | 1 | 1 | C.36.3 | 0.000567 |
N | 218 | A218del | GCT | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 218 | A218A | gcT | gcG | 1 | 1 | P.1.1 | 0.000318 |
N | 218 | A218S | Gct | Tct | 1 | 1 | P.1.10 | 0.000269 |
N | 218 | A218V | gCt | gTt | 1 | 1 | P.1.2 | 0.001156 |
N | 218 | A218S | Gct | Tct | 1 | 1 | Q.1 | 0.000126 |
N | 218 | A218S | Gct | Tct | 1 | 1 | Q.3 | 0.000145 |
N | 218 | A218S | Gct | Tct | 1 | 1 | Q.8 | 0.000165 |
N | 218 | A218A | gcT | gcC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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