CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 218

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N218A218SnonsynGctTct237623740.99915828925-28927
N218A218SnonsynGcTTcC237610.00042087528925-28927
N218A218SnonsynGcTTcG237610.00042087528925-28927
N218A218TnonsynGctAct572572128925-28927
N218A218AsyngcTgcC5014210.84031928925-28927
N218A218AsyngcTgcG501430.085828328925-28927
N218A218AsyngcTgcA501370.073852328925-28927
N218A218VnonsyngCtgTt2232210.99103128925-28927
N218A218VnonsyngCTgTG22320.0089686128925-28927
N218A218deldelGCT---5858128925-28927
N218A218PnonsynGctCct2020128925-28927
N218A218GnonsyngCtgGt20180.928925-28927
N218A218GnonsyngCTgGG2010.0528925-28927
N218A218GnonsyngCTgGC2010.0528925-28927
N218A218DnonsyngCtgAt66128925-28927
N218A218del2delGCt--t430.7528925-28927
N218A218CnonsynGCtTGt430.7528925-28927
N218A218del1delgcTgc-420.528925-28927
N218A218del1delGct-ct420.528925-28927
N218A218CnonsynGCTTGC410.2528925-28927
N218A218del2delgCTg--410.2528925-28927
N218A218FnonsynGCtTTt22128925-28927
N218A218WnonsynGCTTGG11128925-28927
N218A218LnonsynGCTTTG11128925-28927
N218A218KnonsynGCTAAA11128925-28927

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N218A218SGctTct23742376All0.000454
N218A218SGcTTcG12376All0
N218A218SGcTTcC12376All0
N218A218TGctAct572572All0.000109
N218A218SGctTct503503B.1.1.70.00045
N218A218AgcTgcC421501All0.000081
N218A218AgcTgcG43501All0.000008
N218A218AgcTgcA37501All0.000007
N218A218SGctTct395395B.1.617.20.001487
N218A218SGctTct358358AY.40.000557
N218A218VgCtgTt221223All0.000042
N218A218VgCTgTG2223All0
N218A218SGctTct209209AY.1030.001298
N218A218SGctTct204204AY.1200.007584
N218A218TGctAct138138Q.30.020015
N218A218TGctAct135135B.1.1.70.000121
N218A218SGctTct130130AY.430.000576
N218A218AgcTgcC98123B.1.1.70.000088
N218A218AgcTgcG16123B.1.1.70.000014
N218A218AgcTgcA9123B.1.1.70.000008
N218A218AgcTgcC104113B.1.617.20.000392
N218A218AgcTgcG7113B.1.617.20.000026
N218A218AgcTgcA2113B.1.617.20.000008
N218A218SGctTct112112B.1.1.3510.312849
N218A218TGctAct9696AY.40.000149
N218A218VgCtgTt6666B.1.6290.88
N218A218delGCT---5858All0.000011
N218A218SGctTct4242AY.290.000662
N218A218SGctTct4040AY.390.000988
N218A218TGctAct3838B.1.617.20.000143
N218A218SGctTct3737AY.98.10.001792
N218A218SGctTct3030AY.250.00018
N218A218SGctTct2929AY.4.20.000629
N218A218AgcTgcC2929AY.590.01536
N218A218TGctAct2828AD.20.006131
N218A218AgcTgcC2424AY.40.000037
N218A218SGctTct2424AY.60.000987
N218A218SGctTct2222AY.1020.000583
N218A218AgcTgcC2222B.1.1390.016129
N218A218PGctCct2020All0.000004
N218A218GgCtgGt1820All0.000003
N218A218GgCTgGC120All0
N218A218GgCTgGG120All0
N218A218SGctTct2020AY.50.000413
N218A218VgCtgTt1919B.1.1.5190.000755
N218A218AgcTgcC1919B.1.3750.015574
N218A218VgCtgTt1919B.1.617.20.000072
N218A218AgcTgcC1417AY.430.000062
N218A218AgcTgcG317AY.430.000013
N218A218SGctTct1717AY.440.000103
N218A218AgcTgcC1517B.1.20.000132
N218A218AgcTgcG217B.1.20.000018
N218A218VgCtgTt1515B.1.1.70.000013
N218A218TGctAct1515B.1.177.40.003166
N218A218SGctTct1414AY.5.40.003874
N218A218TGctAct1313AY.1020.000345
N218A218TGctAct1313AY.290.000205
N218A218SGctTct1111AY.3.10.000938
N218A218SGctTct1111AY.410.003233
N218A218SGctTct1010AY.980.00079
N218A218GgCtgGt99AY.116.10.002803
N218A218SGctTct99AY.1180.000564
N218A218AgcTgcA99AY.290.000142
N218A218TGctAct99B.1.1770.000119
N218A218SGctTct88AY.1190.000282
N218A218SGctTct88AY.30.00008
N218A218SGctTct88AY.420.000322
N218A218SGctTct88B.10.000073
N218A218AgcTgcA88B.1.1.3170.003294
N218A218VgCtgTt77B.1.10.000127
N218A218TGctAct77B.1.1.390.003568
N218A218PGctCct77B.1.177.40.001477
N218A218AgcTgcC77B.1.2140.025641
N218A218AgcTgcC77B.1.4270.000353
N218A218TGctAct77P.10.00011
N218A218DgCtgAt66All0.000001
N218A218SGctTct66AY.1110.001099
N218A218SGctTct66AY.1210.000812
N218A218SGctTct66AY.200.000233
N218A218TGctAct66AY.250.000036
N218A218AgcTgcC56AY.30.00005
N218A218AgcTgcG16AY.30.00001
N218A218VgCtgTt66AY.40.000009
N218A218VgCtgTt66AY.930.001638
N218A218VgCtgTt66B.10.000055
N218A218delGCT---66B.10.000055
N218A218AgcTgcC56B.10.000046
N218A218AgcTgcG16B.10.000009
N218A218SGctTct66B.1.10.000109
N218A218SGctTct66B.1.4270.000303
N218A218VgCtgTt66B.1.5260.000141
N218A218TGctAct55AY.1170.000423
N218A218AgcTgcC55AY.140.00044
N218A218delGCT---55AY.30.00005
N218A218TGctAct55AY.390.000124
N218A218TGctAct55AY.440.00003
N218A218delGCT---55B.1.1.70.000004
N218A218VgCtgTt55B.1.110.30.003592
N218A218VgCtgTt55B.1.20.000044
N218A218AgcTgcC55B.1.5740.010753
N218A218VgCtgTt55P.10.000079
N218A218AgcTgcC45P.10.000063
N218A218AgcTgcG15P.10.000016
N218A218VgCtgTt44AD.20.000876
N218A218del2GCt--t34All0.000001
N218A218CGCtTGt34All0.000001
N218A218del1Gct-ct24All0
N218A218del1gcTgc-24All0
N218A218CGCTTGC14All0
N218A218del2gCTg--14All0
N218A218SGctTct44AY.1000.000184
N218A218delGCT---44AY.250.000024
N218A218TGctAct44AY.30.00004
N218A218AgcTgcC34AY.440.000018
N218A218AgcTgcG14AY.440.000006
N218A218TGctAct44B.1.20.000035
N218A218SGctTct44B.1.5260.000094
N218A218AgcTgcC33AY.1200.000112
N218A218delGCT---33AY.210.005693
N218A218SGctTct33AY.230.000209
N218A218PGctCct33AY.40.000005
N218A218delGCT---33AY.40.000005
N218A218delGCT---33AY.430.000013
N218A218TGctAct33AY.460.000312
N218A218TGctAct33B.10.000027
N218A218AgcTgcA23B.1.10.000036
N218A218AgcTgcC13B.1.10.000018
N218A218SGctTct33B.1.1.2140.000166
N218A218TGctAct33B.1.177.410.0075
N218A218SGctTct23B.1.2210.000142
N218A218SGcTTcC13B.1.2210.000071
N218A218SGctTct33B.1.221.30.0025
N218A218AgcTgcC33B.1.360.000438
N218A218TGctAct33B.1.4290.000071
N218A218AgcTgcC23B.1.5260.000047
N218A218AgcTgcG13B.1.5260.000024
N218A218AgcTgcC33C.36.30.001702
N218A218SGctTct33P.10.000047
N218A218VgCtgTt33Q.30.000435
N218A218SGctTct33Q.70.003333
N218A218TGctAct33R.10.00027
N218A218GgCtgGt120.055556
N218A218GgCTgGG120.055556
N218A218SGcTTcG120.055556
N218A218SGctTct120.055556
N218A218VgCtgTt22A.10.000564
N218A218FGCtTTt22All0
N218A218delGCT---22AY.1000.000092
N218A218del2GCt--t22AY.1000.000092
N218A218AgcTgcG12AY.1020.000027
N218A218AgcTgcC12AY.1020.000027
N218A218TGctAct22AY.1030.000012
N218A218AgcTgcC12AY.1030.000006
N218A218AgcTgcA12AY.1030.000006
N218A218SGctTct22AY.1170.000169
N218A218AgcTgcG12AY.250.000006
N218A218AgcTgcC12AY.250.000006
N218A218delGCT---22AY.3.10.000171
N218A218AgcTgcC12AY.330.000067
N218A218AgcTgcA12AY.330.000067
N218A218VgCtgTt22AY.390.000049
N218A218delGCT---22AY.390.000049
N218A218delGCT---22AY.440.000012
N218A218VgCtgTt22AY.440.000012
N218A218SGctTct22AY.460.000208
N218A218SGctTct22AY.470.000062
N218A218delGCT---22AY.500.001599
N218A218AgcTgcC22AY.670.000929
N218A218TGctAct22AY.980.000158
N218A218SGctTct22AY.99.20.000184
N218A218TGctAct22B.1.10.000036
N218A218SGctTct22B.1.1.2430.008163
N218A218PGctCct22B.1.1.70.000002
N218A218GgCtgGt22B.1.1.70.000002
N218A218AgcTgcC22B.1.1600.000062
N218A218VgCtgTt22B.1.1770.000026
N218A218AgcTgcA12B.1.1770.000013
N218A218AgcTgcC12B.1.1770.000013
N218A218SGctTct22B.1.20.000018
N218A218CGCTTGC12B.1.2210.000071
N218A218GgCtgGt12B.1.2210.000071
N218A218GgCTgGC12B.1.2210.000071
N218A218CGCtTGt12B.1.2210.000071
N218A218VgCtgTt22B.1.2320.001075
N218A218TGctAct22B.1.2400.000431
N218A218SGctTct22B.1.2430.000139
N218A218AgcTgcC22B.1.2430.000139
N218A218TGctAct22B.1.243.20.028986
N218A218AgcTgcC22B.1.2650.002541
N218A218VgCtgTt22B.1.3200.002491
N218A218TGctAct22B.1.3240.00321
N218A218SGctTct22B.1.3490.00143
N218A218delGCT---22B.1.3510.000059
N218A218AgcTgcC22B.1.4290.000047
N218A218VgCtgTt22B.1.4290.000047
N218A218VgCtgTt22B.1.4530.006472
N218A218TGctAct22B.1.5260.000047
N218A218SGctTct22B.1.5810.018868
N218A218AgcTgcC22B.1.617.10.000258
N218A218delGCT---22B.1.617.20.000008
N218A218del2gCTg--12B.1.617.20.000004
N218A218del2GCt--t12B.1.617.20.000004
N218A218VgCtgTt22B.1.619.10.001283
N218A218SGctTct22D.20.00015
N218A218VgCtgTt22P.50.027397
N218A218CGCtTGt110.055556
N218A218WGCTTGG110.055556
N218A218AgcTgcG110.055556
N218A218DgCtgAt11A0.000387
N218A218AgcTgcC11A.10.000282
N218A218DgCtgAt11A.2.40.003367
N218A218TGctAct11A.2.40.003367
N218A218SGctTct11A.23.10.000704
N218A218SGctTct11AD.20.000219
N218A218VgCtgTt11AE.80.000489
N218A218AgcTgcG11AE.80.000489
N218A218KGCTAAA11All0
N218A218LGCTTTG11All0
N218A218WGCTTGG11All0
N218A218VgCtgTt11AY.1000.000046
N218A218AgcTgcC11AY.1010.00049
N218A218delGCT---11AY.1020.000027
N218A218VgCtgTt11AY.1020.000027
N218A218VgCtgTt11AY.1030.000006
N218A218SGctTct11AY.1050.000643
N218A218SGctTct11AY.1060.000335
N218A218AgcTgcC11AY.1080.001103
N218A218DgCtgAt11AY.1130.000142
N218A218PGctCct11AY.1130.000142
N218A218SGctTct11AY.1160.000287
N218A218AgcTgcC11AY.1170.000085
N218A218TGctAct11AY.1190.000035
N218A218SGctTct11AY.120.000316
N218A218GgCtgGt11AY.120.000316
N218A218delGCT---11AY.1200.000037
N218A218delGCT---11AY.120.10.000321
N218A218SGctTct11AY.120.2.10.000498
N218A218delGCT---11AY.16.10.00047
N218A218GgCtgGt11AY.200.000039
N218A218AgcTgcC11AY.200.000039
N218A218TGctAct11AY.200.000039
N218A218VgCtgTt11AY.230.00007
N218A218VgCtgTt11AY.250.000006
N218A218TGctAct11AY.260.000028
N218A218SGctTct11AY.29.10.000221
N218A218VgCtgTt11AY.30.00001
N218A218VgCtgTt11AY.300.000396
N218A218PGctCct11AY.330.000067
N218A218SGctTct11AY.330.000067
N218A218SGctTct11AY.340.000097
N218A218VgCtgTt11AY.370.000316
N218A218AgcTgcC11AY.390.000025
N218A218AgcTgcG11AY.39.10.00004
N218A218GgCtgGt11AY.40.000002
N218A218DgCtgAt11AY.40.000002
N218A218AgcTgcC11AY.4.20.000022
N218A218TGctAct11AY.4.20.000022
N218A218SGctTct11AY.4.2.10.000149
N218A218VgCtgTt11AY.4.40.000409
N218A218SGctTct11AY.4.40.000409
N218A218SGctTct11AY.4.50.000107
N218A218delGCT---11AY.400.000964
N218A218del1Gct-ct11AY.420.00004
N218A218VgCtgTt11AY.430.000004
N218A218TGctAct11AY.430.000004
N218A218PGctCct11AY.430.000004
N218A218SGctTct11AY.450.000122
N218A218AgcTgcC11AY.46.30.000934
N218A218TGctAct11AY.46.40.000165
N218A218SGctTct11AY.46.50.000198
N218A218PGctCct11AY.46.60.000072
N218A218del1gcTgc-11AY.480.000465
N218A218TGctAct11AY.50.000021
N218A218SGctTct11AY.5.10.003759
N218A218SGctTct11AY.520.000814
N218A218SGctTct11AY.540.000095
N218A218SGctTct11AY.570.000656
N218A218VgCtgTt11AY.570.000656
N218A218AgcTgcA11AY.570.000656
N218A218AgcTgcC11AY.60.000041
N218A218PGctCct11AY.60.000041
N218A218SGctTct11AY.610.000105
N218A218AgcTgcG11AY.620.000436
N218A218SGctTct11AY.640.000595
N218A218SGctTct11AY.670.000464
N218A218VgCtgTt11AY.7.10.000113
N218A218VgCtgTt11AY.740.000116
N218A218TGctAct11AY.740.000116
N218A218delGCT---11AY.750.000056
N218A218AgcTgcG11AY.780.001541
N218A218TGctAct11AY.840.000437
N218A218TGctAct11AY.850.000427
N218A218AgcTgcC11AY.850.000427
N218A218TGctAct11AY.890.004902
N218A218VgCtgTt11AY.90.000068
N218A218AgcTgcG11AY.9.20.000037
N218A218AgcTgcC11AY.920.000287
N218A218SGctTct11AY.940.000443
N218A218SGctTct11AY.99.10.001553
N218A218delGCT---11AY.99.20.000092
N218A218VgCtgTt11AZ.10.000867
N218A218AgcTgcC11B0.000128
N218A218GgCtgGt11B.10.000009
N218A218DgCtgAt11B.10.000009
N218A218PGctCct11B.1.10.000018
N218A218AgcTgcC11B.1.1.100.001115
N218A218SGctTct11B.1.1.1170.009709
N218A218SGctTct11B.1.1.2090.008929
N218A218VgCtgTt11B.1.1.2160.00089
N218A218SGctTct11B.1.1.2770.000759
N218A218VgCtgTt11B.1.1.2880.001916
N218A218AgcTgcC11B.1.1.2910.000742
N218A218delGCT---11B.1.1.3030.002762
N218A218VgCTgTG11B.1.1.3060.000438
N218A218TGctAct11B.1.1.3060.000438
N218A218delGCT---11B.1.1.330.000421
N218A218VgCtgTt11B.1.1.330.000421
N218A218AgcTgcC11B.1.1.330.000421
N218A218VgCtgTt11B.1.1.370.000193
N218A218AgcTgcC11B.1.1.5190.00004
N218A218AgcTgcC11B.1.1.5280.004808
N218A218VgCtgTt11B.1.1.610.008772
N218A218FGCtTTt11B.1.1.70.000001
N218A218AgcTgcA11B.1.1.700.000341
N218A218VgCtgTt11B.1.1260.001276
N218A218VgCtgTt11B.1.1570.002985
N218A218delGCT---11B.1.1600.000031
N218A218FGCtTTt11B.1.1770.000013
N218A218SGctTct11B.1.1770.000013
N218A218SGctTct11B.1.177.210.000076
N218A218delGCT---11B.1.177.210.000076
N218A218AgcTgcC11B.1.177.40.000211
N218A218AgcTgcC11B.1.177.570.000281
N218A218SGctTct11B.1.177.580.001332
N218A218del1Gct-ct11B.1.177.630.002703
N218A218SGctTct11B.1.177.690.001484
N218A218delGCT---11B.1.20.000009
N218A218PGctCct11B.1.2060.000816
N218A218VgCtgTt11B.1.2180.005155
N218A218AgcTgcC11B.1.2210.000071
N218A218AgcTgcC11B.1.2340.000132
N218A218TGctAct11B.1.2980.002114
N218A218AgcTgcA11B.1.3200.001245
N218A218AgcTgcC11B.1.3510.00003
N218A218VgCTgTG11B.1.3510.00003
N218A218VgCtgTt11B.1.36.80.001
N218A218SGctTct11B.1.3960.000706
N218A218VgCtgTt11B.1.4270.00005
N218A218SGctTct11B.1.4290.000024
N218A218TGctAct11B.1.4560.003268
N218A218AgcTgcC11B.1.5490.007194
N218A218LGCTTTG11B.1.5600.00463
N218A218SGctTct11B.1.5610.000397
N218A218AgcTgcC11B.1.5950.000261
N218A218delGCT---11B.1.5960.000087
N218A218del1gcTgc-11B.1.617.10.000129
N218A218delGCT---11B.1.617.10.000129
N218A218CGCtTGt11B.1.617.10.000129
N218A218DgCtgAt11B.1.617.20.000004
N218A218GgCtgGt11B.1.617.20.000004
N218A218PGctCct11B.1.617.20.000004
N218A218KGCTAAA11B.1.617.20.000004
N218A218AgcTgcG11B.1.6210.000089
N218A218VgCtgTt11B.1.6210.000089
N218A218AgcTgcC11B.1.621.10.000506
N218A218VgCtgTt11B.230.002924
N218A218AgcTgcA11C.350.000774
N218A218SGctTct11C.36.30.000567
N218A218delGCT---11C.37.10.002618
N218A218AgcTgcG11P.1.10.000318
N218A218SGctTct11P.1.100.000269
N218A218VgCtgTt11P.1.20.001156
N218A218SGctTct11Q.10.000126
N218A218SGctTct11Q.30.000145
N218A218SGctTct11Q.80.000165
N218A218AgcTgcC11R.10.00009