CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 217 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N217A217VnonsyngCtgTt653653128922-28924

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N217A217VgCtgTt653653All0.000125
N217A217VgCtgTt463463B.1.6270.935354
N217A217VgCtgTt2222AY.40.000034
N217A217VgCtgTt1515AY.440.000091
N217A217VgCtgTt1515B.10.000137
N217A217VgCtgTt1212B.1.2100.025586
N217A217VgCtgTt1010B.1.1.70.000009
N217A217VgCtgTt99AY.250.000054
N217A217VgCtgTt88B.1.1770.000105
N217A217VgCtgTt77B.1.4200.072917
N217A217VgCtgTt66B.1.2400.001293
N217A217VgCtgTt66B.1.258.110.002378
N217A217VgCtgTt66P.1.160.002245
N217A217VgCtgTt55B.1.617.20.000019
N217A217VgCtgTt44AY.1030.000025
N217A217VgCtgTt44AY.430.000018
N217A217VgCtgTt44B.1.10.000073
N217A217VgCtgTt33B.550.00885
N217A217VgCtgTt33D.20.000225
N217A217VgCtgTt22AY.200.000078
N217A217VgCtgTt22AY.290.000032
N217A217VgCtgTt22AY.330.000134
N217A217VgCtgTt22AY.4.50.000215
N217A217VgCtgTt22AY.98.10.000097
N217A217VgCtgTt22B.1.1110.00235
N217A217VgCtgTt22B.1.20.000018
N217A217VgCtgTt22B.1.3510.000059
N217A217VgCtgTt22B.1.5090.001732
N217A217VgCtgTt11A.300.142857
N217A217VgCtgTt11AY.1000.000046
N217A217VgCtgTt11AY.1020.000027
N217A217VgCtgTt11AY.1190.000035
N217A217VgCtgTt11AY.1200.000037
N217A217VgCtgTt11AY.130.000161
N217A217VgCtgTt11AY.260.000028
N217A217VgCtgTt11AY.30.00001
N217A217VgCtgTt11AY.340.000097
N217A217VgCtgTt11AY.390.000025
N217A217VgCtgTt11AY.39.10.00004
N217A217VgCtgTt11AY.460.000104
N217A217VgCtgTt11AY.46.50.000198
N217A217VgCtgTt11AY.46.60.000072
N217A217VgCtgTt11AY.5.40.000277
N217A217VgCtgTt11AY.570.000656
N217A217VgCtgTt11AY.590.00053
N217A217VgCtgTt11AY.9.20.000037
N217A217VgCtgTt11AY.940.000443
N217A217VgCtgTt11AY.950.000761
N217A217VgCtgTt11B0.000128
N217A217VgCtgTt11B.1.1.1640.005155
N217A217VgCtgTt11B.1.1.2140.000055
N217A217VgCtgTt11B.1.1.280.000311
N217A217VgCtgTt11B.1.1.3510.002793
N217A217VgCtgTt11B.1.1.510.001718
N217A217VgCtgTt11B.1.1390.000733
N217A217VgCtgTt11B.1.177.230.003236
N217A217VgCtgTt11B.1.2060.000816
N217A217VgCtgTt11B.1.3890.001002
N217A217VgCtgTt11B.1.4990.00105
N217A217VgCtgTt11B.1.617.10.000129
N217A217VgCtgTt11C.330.058824

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.