CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 217

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	217	A217S		nonsyn	Gct	Tct	2568	2567	0.999611	28922-28924
N	217	A217S		nonsyn	GcT	TcC	2568	1	0.000389408	28922-28924
N	217	A217V		nonsyn	gCt	gTt	653	653	1	28922-28924
N	217	A217A		syn	gcT	gcC	640	438	0.684375	28922-28924
N	217	A217A		syn	gcT	gcA	640	111	0.173438	28922-28924
N	217	A217A		syn	gcT	gcG	640	91	0.142188	28922-28924
N	217	A217T		nonsyn	Gct	Act	255	245	0.960784	28922-28924
N	217	A217T		nonsyn	GcT	AcA	255	9	0.0352941	28922-28924
N	217	A217T		nonsyn	GcT	AcC	255	1	0.00392157	28922-28924
N	217	A217P		nonsyn	Gct	Cct	194	194	1	28922-28924
N	217	A217del		del	GCT	---	85	85	1	28922-28924
N	217	A217G		nonsyn	gCt	gGt	30	26	0.866667	28922-28924
N	217	A217G		nonsyn	gCT	gGC	30	3	0.1	28922-28924
N	217	A217G		nonsyn	gCT	gGG	30	1	0.0333333	28922-28924
N	217	A217D		nonsyn	gCt	gAt	22	22	1	28922-28924
N	217	A217N		nonsyn	GCt	AAt	2	2	1	28922-28924
N	217	A217F		nonsyn	GCt	TTt	2	2	1	28922-28924
N	217	A217C		nonsyn	GCt	TGt	2	1	0.5	28922-28924
N	217	A217C		nonsyn	GCT	TGC	2	1	0.5	28922-28924
N	217	A217del1		del	Gct	-ct	1	1	1	28922-28924
N	217	A217E		nonsyn	gCT	gAA	1	1	1	28922-28924
N	217	A217K		nonsyn	GCT	AAA	1	1	1	28922-28924

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	217	A217S	Gct	Tct	2567	2568	All	0.000491
N	217	A217S	GcT	TcC	1	2568	All	0
N	217	A217V	gCt	gTt	653	653	All	0.000125
N	217	A217A	gcT	gcC	438	640	All	0.000084
N	217	A217A	gcT	gcA	111	640	All	0.000021
N	217	A217A	gcT	gcG	91	640	All	0.000017
N	217	A217V	gCt	gTt	463	463	B.1.627	0.935354
N	217	A217S	Gct	Tct	436	436	AY.4	0.000679
N	217	A217T	Gct	Act	245	255	All	0.000047
N	217	A217T	GcT	AcA	9	255	All	0.000002
N	217	A217T	GcT	AcC	1	255	All	0
N	217	A217S	Gct	Tct	224	224	AY.43	0.000992
N	217	A217S	Gct	Tct	213	213	B.1.618	0.858871
N	217	A217P	Gct	Cct	194	194	All	0.000037
N	217	A217S	Gct	Tct	169	169	B.1.1.7	0.000151
N	217	A217A	gcT	gcC	161	163	AY.44	0.00098
N	217	A217A	gcT	gcA	2	163	AY.44	0.000012
N	217	A217S	Gct	Tct	133	133	B.1.617.2	0.000501
N	217	A217P	Gct	Cct	131	131	AY.25	0.000788
N	217	A217S	Gct	Tct	116	116	AY.12	0.036662
N	217	A217A	gcT	gcC	59	87	B.1.1.7	0.000053
N	217	A217A	gcT	gcG	15	87	B.1.1.7	0.000013
N	217	A217A	gcT	gcA	13	87	B.1.1.7	0.000012
N	217	A217S	Gct	Tct	86	86	AY.103	0.000534
N	217	A217del	GCT	---	85	85	All	0.000016
N	217	A217S	Gct	Tct	82	82	B.1.525	0.009279
N	217	A217S	Gct	Tct	81	81	AY.44	0.000493
N	217	A217S	Gct	Tct	75	75	AY.6	0.003085
N	217	A217S	Gct	Tct	69	69	B.1	0.000632
N	217	A217S	Gct	Tct	59	59	B.1.1.519	0.002343
N	217	A217A	gcT	gcG	58	59	B.1.429	0.001365
N	217	A217A	gcT	gcA	1	59	B.1.429	0.000024
N	217	A217S	Gct	Tct	51	51	AY.26	0.001444
N	217	A217S	Gct	Tct	37	37	AY.25	0.000223
N	217	A217S	Gct	Tct	36	36	AY.102	0.000955
N	217	A217T	Gct	Act	35	35	AY.4	0.000054
N	217	A217S	Gct	Tct	31	31	AY.100	0.001426
N	217	A217G	gCt	gGt	26	30	All	0.000005
N	217	A217G	gCT	gGC	3	30	All	0.000001
N	217	A217G	gCT	gGG	1	30	All	0
N	217	A217S	Gct	Tct	30	30	AY.3	0.000298
N	217	A217S	Gct	Tct	29	29	AY.4.3	0.024411
N	217	A217A	gcT	gcC	24	29	B.1.2	0.000211
N	217	A217A	gcT	gcG	3	29	B.1.2	0.000026
N	217	A217A	gcT	gcA	2	29	B.1.2	0.000018
N	217	A217T	Gct	Act	21	29	B.1.466.2	0.008216
N	217	A217T	GcT	AcA	8	29	B.1.466.2	0.00313
N	217	A217S	Gct	Tct	27	27	AY.46.4	0.004442
N	217	A217S	Gct	Tct	27	27	B.1.2	0.000238
N	217	A217A	gcT	gcC	26	26	AY.117	0.002197
N	217	A217S	Gct	Tct	26	26	AY.39	0.000642
N	217	A217T	Gct	Act	25	25	B.1.2	0.00022
N	217	A217S	Gct	Tct	24	24	AY.98.1	0.001162
N	217	A217S	Gct	Tct	23	23	B.1.177.60	0.005024
N	217	A217D	gCt	gAt	22	22	All	0.000004
N	217	A217V	gCt	gTt	22	22	AY.4	0.000034
N	217	A217S	Gct	Tct	21	21	AY.29	0.000331
N	217	A217T	Gct	Act	21	21	B.1.160	0.000655
N	217	A217A	gcT	gcA	20	21	B.1.160	0.000624
N	217	A217A	gcT	gcC	1	21	B.1.160	0.000031
N	217	A217A	gcT	gcC	19	19	A.1	0.005355
N	217	A217S	Gct	Tct	19	19	B.1.1.214	0.001054
N	217	A217T	Gct	Act	19	19	B.1.1.7	0.000017
N	217	A217T	Gct	Act	18	18	AY.43	0.00008
N	217	A217S	Gct	Tct	18	18	B.1.177	0.000237
N	217	A217S	Gct	Tct	18	18	B.1.582	0.008832
N	217	A217T	Gct	Act	17	18	B.1.617.2	0.000064
N	217	A217T	GcT	AcA	1	18	B.1.617.2	0.000004
N	217	A217A	gcT	gcC	14	17	B.1.617.2	0.000053
N	217	A217A	gcT	gcA	3	17	B.1.617.2	0.000011
N	217	A217S	Gct	Tct	17	17	P.1	0.000268
N	217	A217S	Gct	Tct	16	16	AY.42	0.000644
N	217	A217V	gCt	gTt	15	15	AY.44	0.000091
N	217	A217V	gCt	gTt	15	15	B.1	0.000137
N	217	A217A	gcT	gcC	13	14	P.1	0.000205
N	217	A217A	gcT	gcG	1	14	P.1	0.000016
N	217	A217S	Gct	Tct	13	13	AY.113	0.001851
N	217	A217A	gcT	gcC	12	13	AY.20	0.000466
N	217	A217A	gcT	gcA	1	13	AY.20	0.000039
N	217	A217A	gcT	gcC	5	13	AY.4	0.000008
N	217	A217A	gcT	gcG	4	13	AY.4	0.000006
N	217	A217A	gcT	gcA	4	13	AY.4	0.000006
N	217	A217A	gcT	gcC	9	13	B.1.177	0.000119
N	217	A217A	gcT	gcA	4	13	B.1.177	0.000053
N	217	A217A	gcT	gcA	12	12	AY.29	0.000189
N	217	A217V	gCt	gTt	12	12	B.1.210	0.025586
N	217	A217A	gcT	gcC	11	11	AY.103	0.000068
N	217	A217P	Gct	Cct	11	11	AY.43	0.000049
N	217	A217P	Gct	Cct	11	11	B.1.1.7	0.00001
N	217	A217S	Gct	Tct	11	11	B.1.346	0.014417
N	217	A217A	gcT	gcA	10	10	AY.116	0.002868
N	217	A217T	Gct	Act	10	10	AY.44	0.000061
N	217	A217S	Gct	Tct	10	10	AY.9.2	0.000367
N	217	A217V	gCt	gTt	10	10	B.1.1.7	0.000009
N	217	A217S	Gct	Tct	9	9	AY.109	0.006657
N	217	A217G	gCt	gGt	9	9	AY.25	0.000054
N	217	A217V	gCt	gTt	9	9	AY.25	0.000054
N	217	A217S	Gct	Tct	9	9	AY.4.2	0.000195
N	217	A217S	Gct	Tct	9	9	B.1.429	0.000212
N	217	A217S	Gct	Tct	8	8	AY.119	0.000282
N	217	A217del	GCT	---	8	8	AY.44	0.000049
N	217	A217S	Gct	Tct	8	8	AY.5	0.000165
N	217	A217S	Gct	Tct	8	8	B.1.1.294	0.010127
N	217	A217S	Gct	Tct	8	8	B.1.1.37	0.001543
N	217	A217del	GCT	---	8	8	B.1.1.7	0.000007
N	217	A217V	gCt	gTt	8	8	B.1.177	0.000105
N	217	A217S	Gct	Tct	8	8	B.1.637	0.000585
N	217	A217S	Gct	Tct	8	8	C.37	0.000929
N	217	A217S	Gct	Tct	7	7	AY.111	0.001282
N	217	A217S	Gct	Tct	7	7	AY.117	0.000592
N	217	A217S	Gct	Tct	7	7	AY.27	0.000453
N	217	A217T	Gct	Act	7	7	AY.3	0.00007
N	217	A217P	Gct	Cct	7	7	AY.4	0.000011
N	217	A217T	Gct	Act	7	7	B.1.351	0.000208
N	217	A217V	gCt	gTt	7	7	B.1.420	0.072917
N	217	A217S	Gct	Tct	7	7	B.1.450	0.079545
N	217	A217S	Gct	Tct	7	7	B.1.621	0.00062
N	217	A217S	Gct	Tct	6	6	AY.36	0.000889
N	217	A217A	gcT	gcC	6	6	AY.39.1	0.000238
N	217	A217del	GCT	---	6	6	AY.4	0.000009
N	217	A217A	gcT	gcC	6	6	AY.9.2	0.00022
N	217	A217del	GCT	---	6	6	B.1	0.000055
N	217	A217T	Gct	Act	6	6	B.1	0.000055
N	217	A217A	gcT	gcA	3	6	B.1	0.000027
N	217	A217A	gcT	gcC	2	6	B.1	0.000018
N	217	A217A	gcT	gcG	1	6	B.1	0.000009
N	217	A217S	Gct	Tct	6	6	B.1.1	0.000109
N	217	A217D	gCt	gAt	6	6	B.1.1.7	0.000005
N	217	A217V	gCt	gTt	6	6	B.1.240	0.001293
N	217	A217V	gCt	gTt	6	6	B.1.258.11	0.002378
N	217	A217S	Gct	Tct	6	6	B.1.324	0.009631
N	217	A217S	Gct	Tct	6	6	B.1.36	0.000875
N	217	A217P	Gct	Cct	6	6	B.1.617.2	0.000023
N	217	A217del	GCT	---	6	6	B.1.617.2	0.000023
N	217	A217V	gCt	gTt	6	6	P.1.16	0.002245
N	217	A217del	GCT	---	5	5	AY.100	0.00023
N	217	A217S	Gct	Tct	5	5	AY.120	0.000186
N	217	A217T	Gct	Act	5	5	AY.14	0.00044
N	217	A217S	Gct	Tct	5	5	AY.20	0.000194
N	217	A217A	gcT	gcC	3	5	AY.25	0.000018
N	217	A217A	gcT	gcA	2	5	AY.25	0.000012
N	217	A217del	GCT	---	5	5	AY.3	0.00005
N	217	A217A	gcT	gcC	4	5	AY.3	0.00004
N	217	A217A	gcT	gcA	1	5	AY.3	0.00001
N	217	A217T	Gct	Act	5	5	AY.39	0.000124
N	217	A217A	gcT	gcC	5	5	AY.43	0.000022
N	217	A217P	Gct	Cct	5	5	AY.47	0.000156
N	217	A217S	Gct	Tct	5	5	AY.47	0.000156
N	217	A217S	Gct	Tct	5	5	AY.61	0.000524
N	217	A217S	Gct	Tct	5	5	AY.68	0.001369
N	217	A217T	Gct	Act	5	5	B.1.1.519	0.000199
N	217	A217A	gcT	gcA	5	5	B.1.177.86	0.000917
N	217	A217S	Gct	Tct	5	5	B.1.526	0.000118
N	217	A217V	gCt	gTt	5	5	B.1.617.2	0.000019
N	217	A217T	Gct	Act	5	5	P.1	0.000079
N	217	A217A	gcT	gcC	4	4	AY.100	0.000184
N	217	A217D	gCt	gAt	4	4	AY.103	0.000025
N	217	A217V	gCt	gTt	4	4	AY.103	0.000025
N	217	A217S	Gct	Tct	4	4	AY.118	0.000251
N	217	A217A	gcT	gcA	2	4	AY.120	0.000074
N	217	A217A	gcT	gcC	2	4	AY.120	0.000074
N	217	A217del	GCT	---	4	4	AY.25	0.000024
N	217	A217del	GCT	---	4	4	AY.43	0.000018
N	217	A217V	gCt	gTt	4	4	AY.43	0.000018
N	217	A217S	Gct	Tct	4	4	AY.46	0.000416
N	217	A217S	Gct	Tct	4	4	AY.46.6	0.000289
N	217	A217A	gcT	gcC	4	4	AY.79	0.004843
N	217	A217A	gcT	gcA	2	4	AY.9	0.000135
N	217	A217A	gcT	gcC	2	4	AY.9	0.000135
N	217	A217S	Gct	Tct	4	4	AY.99.2	0.000369
N	217	A217V	gCt	gTt	4	4	B.1.1	0.000073
N	217	A217A	gcT	gcC	2	4	B.1.1	0.000036
N	217	A217A	gcT	gcG	1	4	B.1.1	0.000018
N	217	A217A	gcT	gcA	1	4	B.1.1	0.000018
N	217	A217S	Gct	Tct	4	4	B.1.1.74	0.017241
N	217	A217T	Gct	Act	4	4	B.1.214.2	0.002398
N	217	A217S	Gct	Tct	4	4	B.1.351	0.000119
N	217	A217T	Gct	Act	4	4	B.1.441	0.038462
N	217	A217S	Gct	Tct	4	4	B.6.6	0.003556
N	217	A217G	gCt	gGt	3	3	AY.102	0.00008
N	217	A217del	GCT	---	3	3	AY.103	0.000019
N	217	A217A	gcT	gcC	3	3	AY.121	0.000406
N	217	A217S	Gct	Tct	3	3	AY.121	0.000406
N	217	A217del	GCT	---	3	3	AY.21	0.005693
N	217	A217S	Gct	Tct	3	3	AY.23	0.000209
N	217	A217S	Gct	Tct	3	3	AY.33	0.0002
N	217	A217A	gcT	gcA	2	3	AY.33	0.000134
N	217	A217A	gcT	gcC	1	3	AY.33	0.000067
N	217	A217G	gCt	gGt	3	3	AY.4	0.000005
N	217	A217S	Gct	Tct	3	3	AY.4.5	0.000322
N	217	A217S	Gct	Tct	3	3	AY.45	0.000365
N	217	A217S	Gct	Tct	3	3	AY.46.5	0.000595
N	217	A217S	Gct	Tct	3	3	AY.7.2	0.001678
N	217	A217S	Gct	Tct	3	3	AY.77	0.003382
N	217	A217S	Gct	Tct	3	3	AY.98	0.000237
N	217	A217P	Gct	Cct	3	3	B.1.177.32	0.004049
N	217	A217S	Gct	Tct	3	3	B.1.177.46	0.002755
N	217	A217S	Gct	Tct	3	3	B.1.177.58	0.003995
N	217	A217S	Gct	Tct	2	3	B.1.221	0.000142
N	217	A217S	GcT	TcC	1	3	B.1.221	0.000071
N	217	A217A	gcT	gcA	2	3	B.1.351	0.000059
N	217	A217A	gcT	gcC	1	3	B.1.351	0.00003
N	217	A217S	Gct	Tct	3	3	B.1.595	0.000783
N	217	A217V	gCt	gTt	3	3	B.55	0.00885
N	217	A217V	gCt	gTt	3	3	D.2	0.000225
N	217	A217G	gCT	gGC	1	2		0.055556
N	217	A217G	gCt	gGt	1	2		0.055556
N	217	A217N	GCt	AAt	2	2	All	0
N	217	A217F	GCt	TTt	2	2	All	0
N	217	A217C	GCt	TGt	1	2	All	0
N	217	A217C	GCT	TGC	1	2	All	0
N	217	A217A	gcT	gcC	2	2	AY.102	0.000053
N	217	A217T	Gct	Act	2	2	AY.103	0.000012
N	217	A217V	gCt	gTt	2	2	AY.20	0.000078
N	217	A217V	gCt	gTt	2	2	AY.29	0.000032
N	217	A217del	GCT	---	2	2	AY.3.1	0.000171
N	217	A217V	gCt	gTt	2	2	AY.33	0.000134
N	217	A217A	gcT	gcA	2	2	AY.34	0.000194
N	217	A217S	Gct	Tct	2	2	AY.34	0.000194
N	217	A217P	Gct	Cct	2	2	AY.39	0.000049
N	217	A217del	GCT	---	2	2	AY.39	0.000049
N	217	A217S	Gct	Tct	2	2	AY.39.1	0.000079
N	217	A217V	gCt	gTt	2	2	AY.4.5	0.000215
N	217	A217G	gCt	gGt	2	2	AY.43	0.000009
N	217	A217A	gcT	gcC	2	2	AY.45	0.000243
N	217	A217T	Gct	Act	2	2	AY.46.6	0.000144
N	217	A217A	gcT	gcC	2	2	AY.5	0.000041
N	217	A217del	GCT	---	2	2	AY.50	0.001599
N	217	A217S	Gct	Tct	2	2	AY.50	0.001599
N	217	A217S	Gct	Tct	2	2	AY.54	0.000191
N	217	A217S	Gct	Tct	2	2	AY.78	0.003082
N	217	A217S	Gct	Tct	2	2	AY.82	0.002714
N	217	A217S	Gct	Tct	2	2	AY.92	0.000575
N	217	A217V	gCt	gTt	2	2	AY.98.1	0.000097
N	217	A217T	Gct	Act	2	2	AY.98.1	0.000097
N	217	A217D	gCt	gAt	2	2	B.1	0.000018
N	217	A217G	gCT	gGC	1	2	B.1	0.000009
N	217	A217G	gCt	gGt	1	2	B.1	0.000009
N	217	A217G	gCt	gGt	1	2	B.1.1	0.000018
N	217	A217G	gCT	gGG	1	2	B.1.1	0.000018
N	217	A217S	Gct	Tct	2	2	B.1.1.194	0.009901
N	217	A217A	gcT	gcG	2	2	B.1.1.216	0.001781
N	217	A217S	Gct	Tct	2	2	B.1.1.216	0.001781
N	217	A217S	Gct	Tct	2	2	B.1.1.291	0.001485
N	217	A217A	gcT	gcC	2	2	B.1.1.440	0.023529
N	217	A217S	Gct	Tct	2	2	B.1.1.448	0.004065
N	217	A217A	gcT	gcC	2	2	B.1.1.50	0.001358
N	217	A217G	gCt	gGt	2	2	B.1.1.7	0.000002
N	217	A217V	gCt	gTt	2	2	B.1.111	0.00235
N	217	A217S	Gct	Tct	2	2	B.1.160	0.000062
N	217	A217A	gcT	gcG	1	2	B.1.160.16	0.000929
N	217	A217A	gcT	gcC	1	2	B.1.160.16	0.000929
N	217	A217V	gCt	gTt	2	2	B.1.2	0.000018
N	217	A217P	Gct	Cct	2	2	B.1.2	0.000018
N	217	A217S	Gct	Tct	2	2	B.1.22	0.002635
N	217	A217G	gCt	gGt	1	2	B.1.221	0.000071
N	217	A217C	GCT	TGC	1	2	B.1.221	0.000071
N	217	A217C	GCt	TGt	1	2	B.1.221	0.000071
N	217	A217G	gCT	gGC	1	2	B.1.221	0.000071
N	217	A217A	gcT	gcC	2	2	B.1.234	0.000264
N	217	A217A	gcT	gcG	2	2	B.1.241	0.001623
N	217	A217S	Gct	Tct	2	2	B.1.258	0.000133
N	217	A217A	gcT	gcC	2	2	B.1.258.17	0.000208
N	217	A217S	Gct	Tct	2	2	B.1.258.17	0.000208
N	217	A217S	Gct	Tct	2	2	B.1.311	0.000549
N	217	A217V	gCt	gTt	2	2	B.1.351	0.000059
N	217	A217del	GCT	---	2	2	B.1.351	0.000059
N	217	A217S	Gct	Tct	2	2	B.1.36.31	0.003503
N	217	A217S	Gct	Tct	2	2	B.1.427	0.000101
N	217	A217V	gCt	gTt	2	2	B.1.509	0.001732
N	217	A217A	gcT	gcC	2	2	B.1.546	0.007407
N	217	A217A	gcT	gcA	2	2	B.1.564	0.000852
N	217	A217A	gcT	gcA	2	2	B.1.564.1	0.003155
N	217	A217S	Gct	Tct	2	2	B.1.575	0.000607
N	217	A217S	Gct	Tct	2	2	B.1.596	0.000174
N	217	A217T	Gct	Act	2	2	B.1.621	0.000177
N	217	A217S	Gct	Tct	2	2	B.47	0.040816
N	217	A217S	Gct	Tct	2	2	C.36	0.001821
N	217	A217S	Gct	Tct	2	2	P.1.15	0.000465
N	217	A217A	gcT	gcC	1	1		0.055556
N	217	A217S	Gct	Tct	1	1	A.19	0.009434
N	217	A217S	Gct	Tct	1	1	A.2.2	0.001689
N	217	A217A	gcT	gcC	1	1	A.2.4	0.003367
N	217	A217S	Gct	Tct	1	1	A.29	0.005319
N	217	A217V	gCt	gTt	1	1	A.30	0.142857
N	217	A217E	gCT	gAA	1	1	All	0
N	217	A217del1	Gct	-ct	1	1	All	0
N	217	A217K	GCT	AAA	1	1	All	0
N	217	A217T	Gct	Act	1	1	AU.2	0.002421
N	217	A217S	Gct	Tct	1	1	AY.1	0.000396
N	217	A217S	Gct	Tct	1	1	AY.10	0.00053
N	217	A217V	gCt	gTt	1	1	AY.100	0.000046
N	217	A217del	GCT	---	1	1	AY.102	0.000027
N	217	A217V	gCt	gTt	1	1	AY.102	0.000027
N	217	A217P	Gct	Cct	1	1	AY.102	0.000027
N	217	A217S	Gct	Tct	1	1	AY.105	0.000643
N	217	A217S	Gct	Tct	1	1	AY.108	0.001103
N	217	A217del	GCT	---	1	1	AY.110	0.000113
N	217	A217A	gcT	gcC	1	1	AY.110	0.000113
N	217	A217S	Gct	Tct	1	1	AY.116	0.000287
N	217	A217T	Gct	Act	1	1	AY.116.1	0.000311
N	217	A217V	gCt	gTt	1	1	AY.119	0.000035
N	217	A217A	gcT	gcC	1	1	AY.12	0.000316
N	217	A217V	gCt	gTt	1	1	AY.120	0.000037
N	217	A217del	GCT	---	1	1	AY.120	0.000037
N	217	A217A	gcT	gcG	1	1	AY.120.1	0.000321
N	217	A217del	GCT	---	1	1	AY.120.1	0.000321
N	217	A217S	Gct	Tct	1	1	AY.120.1	0.000321
N	217	A217V	gCt	gTt	1	1	AY.13	0.000161
N	217	A217del	GCT	---	1	1	AY.16.1	0.00047
N	217	A217A	gcT	gcC	1	1	AY.19	0.00114
N	217	A217T	Gct	Act	1	1	AY.20	0.000039
N	217	A217T	Gct	Act	1	1	AY.23	0.00007
N	217	A217T	Gct	Act	1	1	AY.25	0.000006
N	217	A217N	GCt	AAt	1	1	AY.25	0.000006
N	217	A217V	gCt	gTt	1	1	AY.26	0.000028
N	217	A217A	gcT	gcA	1	1	AY.26	0.000028
N	217	A217D	gCt	gAt	1	1	AY.29	0.000016
N	217	A217S	Gct	Tct	1	1	AY.29.1	0.000221
N	217	A217P	Gct	Cct	1	1	AY.3	0.00001
N	217	A217V	gCt	gTt	1	1	AY.3	0.00001
N	217	A217D	gCt	gAt	1	1	AY.3	0.00001
N	217	A217T	Gct	Act	1	1	AY.3.1	0.000085
N	217	A217S	Gct	Tct	1	1	AY.30	0.000396
N	217	A217T	Gct	Act	1	1	AY.33	0.000067
N	217	A217V	gCt	gTt	1	1	AY.34	0.000097
N	217	A217V	gCt	gTt	1	1	AY.39	0.000025
N	217	A217A	gcT	gcC	1	1	AY.39	0.000025
N	217	A217V	gCt	gTt	1	1	AY.39.1	0.00004
N	217	A217P	Gct	Cct	1	1	AY.39.1	0.00004
N	217	A217S	Gct	Tct	1	1	AY.39.2	0.001541
N	217	A217A	gcT	gcC	1	1	AY.4.2	0.000022
N	217	A217G	gCt	gGt	1	1	AY.4.2	0.000022
N	217	A217T	Gct	Act	1	1	AY.4.5	0.000107
N	217	A217del	GCT	---	1	1	AY.40	0.000964
N	217	A217T	Gct	Act	1	1	AY.45	0.000122
N	217	A217A	gcT	gcC	1	1	AY.46	0.000104
N	217	A217V	gCt	gTt	1	1	AY.46	0.000104
N	217	A217T	Gct	Act	1	1	AY.46	0.000104
N	217	A217V	gCt	gTt	1	1	AY.46.5	0.000198
N	217	A217P	Gct	Cct	1	1	AY.46.5	0.000198
N	217	A217V	gCt	gTt	1	1	AY.46.6	0.000072
N	217	A217S	Gct	Tct	1	1	AY.5.3	0.000337
N	217	A217V	gCt	gTt	1	1	AY.5.4	0.000277
N	217	A217S	Gct	Tct	1	1	AY.5.4	0.000277
N	217	A217A	gcT	gcA	1	1	AY.5.4	0.000277
N	217	A217S	Gct	Tct	1	1	AY.51	0.000909
N	217	A217S	Gct	Tct	1	1	AY.55	0.000917
N	217	A217S	Gct	Tct	1	1	AY.57	0.000656
N	217	A217D	gCt	gAt	1	1	AY.57	0.000656
N	217	A217V	gCt	gTt	1	1	AY.57	0.000656
N	217	A217T	Gct	Act	1	1	AY.57	0.000656
N	217	A217V	gCt	gTt	1	1	AY.59	0.00053
N	217	A217S	Gct	Tct	1	1	AY.60	0.000938
N	217	A217A	gcT	gcC	1	1	AY.61	0.000105
N	217	A217P	Gct	Cct	1	1	AY.62	0.000436
N	217	A217A	gcT	gcC	1	1	AY.63	0.000387
N	217	A217S	Gct	Tct	1	1	AY.64	0.000595
N	217	A217N	GCt	AAt	1	1	AY.69	0.000187
N	217	A217S	Gct	Tct	1	1	AY.69	0.000187
N	217	A217S	Gct	Tct	1	1	AY.7.1	0.000113
N	217	A217S	Gct	Tct	1	1	AY.70	0.000209
N	217	A217S	Gct	Tct	1	1	AY.71	0.000475
N	217	A217A	gcT	gcC	1	1	AY.74	0.000116
N	217	A217del	GCT	---	1	1	AY.75	0.000056
N	217	A217S	Gct	Tct	1	1	AY.75.1	0.00018
N	217	A217A	gcT	gcC	1	1	AY.84	0.000437
N	217	A217G	gCt	gGt	1	1	AY.87	0.000833
N	217	A217T	Gct	Act	1	1	AY.9	0.000068
N	217	A217S	Gct	Tct	1	1	AY.9	0.000068
N	217	A217S	Gct	Tct	1	1	AY.9.1	0.000084
N	217	A217V	gCt	gTt	1	1	AY.9.2	0.000037
N	217	A217S	Gct	Tct	1	1	AY.91	0.00073
N	217	A217V	gCt	gTt	1	1	AY.94	0.000443
N	217	A217T	Gct	Act	1	1	AY.94	0.000443
N	217	A217S	Gct	Tct	1	1	AY.94	0.000443
N	217	A217V	gCt	gTt	1	1	AY.95	0.000761
N	217	A217del	GCT	---	1	1	AY.96	0.002075
N	217	A217T	Gct	Act	1	1	AY.96	0.002075
N	217	A217S	Gct	Tct	1	1	AY.99	0.001049
N	217	A217T	Gct	Act	1	1	AY.99.1	0.001553
N	217	A217del	GCT	---	1	1	AY.99.2	0.000092
N	217	A217V	gCt	gTt	1	1	B	0.000128
N	217	A217D	gCt	gAt	1	1	B.1.1	0.000018
N	217	A217T	GcT	AcC	1	1	B.1.1	0.000018
N	217	A217del	GCT	---	1	1	B.1.1	0.000018
N	217	A217A	gcT	gcC	1	1	B.1.1.1	0.000327
N	217	A217S	Gct	Tct	1	1	B.1.1.1	0.000327
N	217	A217S	Gct	Tct	1	1	B.1.1.153	0.001095
N	217	A217V	gCt	gTt	1	1	B.1.1.164	0.005155
N	217	A217P	Gct	Cct	1	1	B.1.1.165	0.015385
N	217	A217S	Gct	Tct	1	1	B.1.1.176	0.000439
N	217	A217S	Gct	Tct	1	1	B.1.1.213	0.021739
N	217	A217D	gCt	gAt	1	1	B.1.1.214	0.000055
N	217	A217A	gcT	gcC	1	1	B.1.1.214	0.000055
N	217	A217V	gCt	gTt	1	1	B.1.1.214	0.000055
N	217	A217A	gcT	gcC	1	1	B.1.1.220	0.001859
N	217	A217S	Gct	Tct	1	1	B.1.1.222	0.000204
N	217	A217S	Gct	Tct	1	1	B.1.1.243	0.004082
N	217	A217del1	Gct	-ct	1	1	B.1.1.25	0.000569
N	217	A217V	gCt	gTt	1	1	B.1.1.28	0.000311
N	217	A217A	gcT	gcC	1	1	B.1.1.28	0.000311
N	217	A217del	GCT	---	1	1	B.1.1.303	0.002762
N	217	A217A	gcT	gcA	1	1	B.1.1.305	0.003861
N	217	A217S	Gct	Tct	1	1	B.1.1.306	0.000438
N	217	A217S	Gct	Tct	1	1	B.1.1.325	0.025641
N	217	A217S	Gct	Tct	1	1	B.1.1.326	0.001761
N	217	A217del	GCT	---	1	1	B.1.1.33	0.000421
N	217	A217S	Gct	Tct	1	1	B.1.1.348	0.000796
N	217	A217V	gCt	gTt	1	1	B.1.1.351	0.002793
N	217	A217S	Gct	Tct	1	1	B.1.1.373	0.02381
N	217	A217S	Gct	Tct	1	1	B.1.1.389	0.006061
N	217	A217D	gCt	gAt	1	1	B.1.1.430	0.041667
N	217	A217A	gcT	gcA	1	1	B.1.1.434	0.000349
N	217	A217S	Gct	Tct	1	1	B.1.1.434	0.000349
N	217	A217P	Gct	Cct	1	1	B.1.1.44	0.00241
N	217	A217S	Gct	Tct	1	1	B.1.1.50	0.000679
N	217	A217V	gCt	gTt	1	1	B.1.1.51	0.001718
N	217	A217F	GCt	TTt	1	1	B.1.1.7	0.000001
N	217	A217A	gcT	gcA	1	1	B.1.1.70	0.000341
N	217	A217S	Gct	Tct	1	1	B.1.112	0.005181
N	217	A217V	gCt	gTt	1	1	B.1.139	0.000733
N	217	A217A	gcT	gcG	1	1	B.1.147	0.000756
N	217	A217del	GCT	---	1	1	B.1.160	0.000031
N	217	A217A	gcT	gcC	1	1	B.1.160.10	0.008065
N	217	A217A	gcT	gcA	1	1	B.1.160.30	0.002976
N	217	A217A	gcT	gcC	1	1	B.1.162	0.005025
N	217	A217P	Gct	Cct	1	1	B.1.177	0.000013
N	217	A217T	Gct	Act	1	1	B.1.177	0.000013
N	217	A217S	Gct	Tct	1	1	B.1.177.12	0.000152
N	217	A217S	Gct	Tct	1	1	B.1.177.15	0.000631
N	217	A217del	GCT	---	1	1	B.1.177.21	0.000076
N	217	A217V	gCt	gTt	1	1	B.1.177.23	0.003236
N	217	A217del	GCT	---	1	1	B.1.177.63	0.002703
N	217	A217S	Gct	Tct	1	1	B.1.177.75	0.001041
N	217	A217S	Gct	Tct	1	1	B.1.177.77	0.000726
N	217	A217S	Gct	Tct	1	1	B.1.177.8	0.000752
N	217	A217S	Gct	Tct	1	1	B.1.177.82	0.000477
N	217	A217S	Gct	Tct	1	1	B.1.188	0.016667
N	217	A217del	GCT	---	1	1	B.1.2	0.000009
N	217	A217V	gCt	gTt	1	1	B.1.206	0.000816
N	217	A217T	Gct	Act	1	1	B.1.214.3	0.007143
N	217	A217A	gcT	gcC	1	1	B.1.221	0.000071
N	217	A217S	Gct	Tct	1	1	B.1.221.2	0.004016
N	217	A217P	Gct	Cct	1	1	B.1.232	0.000537
N	217	A217S	Gct	Tct	1	1	B.1.234	0.000132
N	217	A217P	Gct	Cct	1	1	B.1.258	0.000067
N	217	A217S	Gct	Tct	1	1	B.1.314	0.007519
N	217	A217D	gCt	gAt	1	1	B.1.351	0.00003
N	217	A217P	Gct	Cct	1	1	B.1.351	0.00003
N	217	A217P	Gct	Cct	1	1	B.1.36	0.000146
N	217	A217T	Gct	Act	1	1	B.1.370	0.008
N	217	A217V	gCt	gTt	1	1	B.1.389	0.001002
N	217	A217S	Gct	Tct	1	1	B.1.389	0.001002
N	217	A217S	Gct	Tct	1	1	B.1.391	0.001127
N	217	A217D	gCt	gAt	1	1	B.1.396	0.000706
N	217	A217A	gcT	gcG	1	1	B.1.427	0.00005
N	217	A217T	Gct	Act	1	1	B.1.429	0.000024
N	217	A217V	gCt	gTt	1	1	B.1.499	0.00105
N	217	A217T	Gct	Act	1	1	B.1.525	0.000113
N	217	A217A	gcT	gcA	1	1	B.1.526	0.000024
N	217	A217S	Gct	Tct	1	1	B.1.527	0.003704
N	217	A217K	GCT	AAA	1	1	B.1.560	0.00463
N	217	A217S	Gct	Tct	1	1	B.1.576	0.000907
N	217	A217A	gcT	gcC	1	1	B.1.595	0.000261
N	217	A217del	GCT	---	1	1	B.1.596	0.000087
N	217	A217P	Gct	Cct	1	1	B.1.596	0.000087
N	217	A217A	gcT	gcC	1	1	B.1.596	0.000087
N	217	A217A	gcT	gcA	1	1	B.1.609	0.000479
N	217	A217del	GCT	---	1	1	B.1.617.1	0.000129
N	217	A217V	gCt	gTt	1	1	B.1.617.1	0.000129
N	217	A217P	Gct	Cct	1	1	B.1.617.1	0.000129
N	217	A217G	gCt	gGt	1	1	B.1.617.2	0.000004
N	217	A217D	gCt	gAt	1	1	B.1.617.2	0.000004
N	217	A217E	gCT	gAA	1	1	B.1.617.2	0.000004
N	217	A217S	Gct	Tct	1	1	B.1.619.1	0.000641
N	217	A217A	gcT	gcA	1	1	B.1.621	0.000089
N	217	A217P	Gct	Cct	1	1	B.1.621.1	0.000506
N	217	A217F	GCt	TTt	1	1	B.1.627	0.00202
N	217	A217S	Gct	Tct	1	1	B.1.631	0.003367
N	217	A217A	gcT	gcC	1	1	B.1.637	0.000073
N	217	A217P	Gct	Cct	1	1	B.29	0.003509
N	217	A217V	gCt	gTt	1	1	C.33	0.058824
N	217	A217A	gcT	gcA	1	1	C.37	0.000116
N	217	A217del	GCT	---	1	1	C.37.1	0.002618
N	217	A217S	Gct	Tct	1	1	P.1.12	0.000484
N	217	A217T	Gct	Act	1	1	P.1.14	0.000048
N	217	A217T	Gct	Act	1	1	P.1.15	0.000232
N	217	A217A	gcT	gcA	1	1	P.1.15	0.000232
N	217	A217S	Gct	Tct	1	1	P.1.7	0.000319
N	217	A217S	Gct	Tct	1	1	P.2	0.000187
N	217	A217D	gCt	gAt	1	1	P.3	0.001595
N	217	A217A	gcT	gcA	1	1	P.3	0.001595
N	217	A217T	Gct	Act	1	1	Q.4	0.000455
N	217	A217S	Gct	Tct	1	1	Q.7	0.001111
N	217	A217A	gcT	gcA	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.