CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 215 & Codon = Agt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N215G215SnonsynGgtAgt10348320.80464228916-28918

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N215G215SGgtAgt8321034All0.000159
N215G215SGgtAgt174174B.1.1.70.000156
N215G215SGgtAgt8080B.1.4430.373832
N215G215SGgtAgt6565B.1.2320.034927
N215G215SGgtAgt163AY.40.000002
N215G215SGgtAgt2344B.1.617.20.000087
N215G215SGgtAgt3838AY.750.002129
N215G215SGgtAgt3737B.1.5270.137037
N215G215SGgtAgt3434B.10.000311
N215G215SGgtAgt3131B.1.5250.003508
N215G215SGgtAgt2323B.1.5950.006002
N215G215SGgtAgt122AY.30.00001
N215G215SGgtAgt2222S.10.108911
N215G215SGgtAgt1721AY.440.000103
N215G215SGgtAgt2020B.1.1600.000624
N215G215SGgtAgt1717B.1.5260.0004
N215G215SGgtAgt1717B.1.5960.001481
N215G215SGgtAgt1414B.1.1.3160.012951
N215G215SGgtAgt1414B.1.438.10.001502
N215G215SGgtAgt1414B.1.6210.001239
N215G215SGgtAgt1313A.2.5.20.02044
N215G215SGgtAgt1313B.1.20.000114
N215G215SGgtAgt112AY.390.000025
N215G215SGgtAgt1111P.10.000173
N215G215SGgtAgt210AY.430.000009
N215G215SGgtAgt99B.1.9.50.051136
N215G215SGgtAgt18AY.1200.000037
N215G215SGgtAgt88B.1.10.000145
N215G215SGgtAgt77AY.470.000218
N215G215SGgtAgt77AY.610.000733
N215G215SGgtAgt77B.1.1.2650.022082
N215G215SGgtAgt66B.1.4290.000141
N215G215SGgtAgt55B.1.1.5190.000199
N215G215SGgtAgt55B.1.4410.048077
N215G215SGgtAgt55B.1.466.20.001956
N215G215SGgtAgt55B.1.6200.00473
N215G215SGgtAgt55B.1.6340.017123
N215G215SGgtAgt44AY.260.000113
N215G215SGgtAgt44AY.460.000416
N215G215SGgtAgt44B.1.3510.000119
N215G215SGgtAgt13AY.980.000079
N215G215SGgtAgt33B.1.258.110.001189
N215G215SGgtAgt33B.1.4060.018182
N215G215SGgtAgt13P.1.140.000048
N215G215SGgtAgt22AY.240.000862
N215G215SGgtAgt22AY.590.001059
N215G215SGgtAgt12B.1.1.3060.000438
N215G215SGgtAgt22B.1.1770.000026
N215G215SGgtAgt22B.1.2430.000139
N215G215SGgtAgt22B.60.00182
N215G215SGgtAgt11AW.10.003049
N215G215SGgtAgt11AY.1050.000643
N215G215SGgtAgt11AY.16.10.00047
N215G215SGgtAgt11AY.190.00114
N215G215SGgtAgt11AY.20.000356
N215G215SGgtAgt11AY.370.000316
N215G215SGgtAgt11AY.400.000964
N215G215SGgtAgt11AY.450.000122
N215G215SGgtAgt11AY.540.000095
N215G215SGgtAgt11AY.670.000464
N215G215SGgtAgt11AY.730.000665
N215G215SGgtAgt11AY.9.10.000084
N215G215SGgtAgt11B0.000128
N215G215SGgtAgt11B.1.1.10.000327
N215G215SGgtAgt11B.1.1.2160.00089
N215G215SGgtAgt11B.1.1.2280.003049
N215G215SGgtAgt11B.1.1.2940.001266
N215G215SGgtAgt11B.1.1.3170.000412
N215G215SGgtAgt11B.1.1.3180.000302
N215G215SGgtAgt11B.1.1.3280.016949
N215G215SGgtAgt11B.1.1.3290.003846
N215G215SGgtAgt11B.1.1.4340.000349
N215G215SGgtAgt11B.1.1.4640.001473
N215G215SGgtAgt11B.1.1280.000635
N215G215SGgtAgt11B.1.1640.014925
N215G215SGgtAgt11B.1.177.70.000165
N215G215SGgtAgt11B.1.2100.002132
N215G215SGgtAgt11B.1.2400.000216
N215G215SGgtAgt11B.1.2410.000812
N215G215SGgtAgt11B.1.3460.001311
N215G215SGgtAgt11B.1.360.000146
N215G215SGgtAgt11B.1.36.160.001425
N215G215SGgtAgt11B.1.36.290.000517
N215G215SGgtAgt11B.1.36.80.001
N215G215SGgtAgt11B.1.3620.001541
N215G215SGgtAgt11B.1.4270.00005
N215G215SGgtAgt11B.1.4800.002488
N215G215SGgtAgt11B.1.4990.00105
N215G215SGgtAgt11B.1.575.10.002439
N215G215SGgtAgt11B.1.5820.000491
N215G215SGgtAgt11B.1.5880.00091
N215G215SGgtAgt11B.1.617.10.000129
N215G215SGgtAgt11B.1.6370.000073
N215G215SGgtAgt11C.370.000116
N215G215SGgtAgt11D.20.000075
N215G215SGgtAgt11P.1.130.000898
N215G215SGgtAgt11P.1.20.001156
N215G215SGgtAgt11Q.30.000145
N215G215SGgtAgt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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