CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 214 & Codon = gTc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N214G214VnonsyngGcgTc2232170.97309428913-28915

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N214G214VgGcgTc217223All0.000042
N214G214VgGcgTc3535B.1.1.280.010893
N214G214VgGcgTc3131AY.40.000048
N214G214VgGcgTc2929B.10.000266
N214G214VgGcgTc2121B.1.1950.105528
N214G214VgGcgTc1616B.1.1.70.000014
N214G214VgGcgTc1414B.1.617.20.000053
N214G214VgGcgTc55B.1.1770.000066
N214G214VgGcgTc34AY.250.000018
N214G214VgGcgTc44AY.980.000316
N214G214VgGcgTc44B.1.10.000073
N214G214VgGcgTc33AY.30.00003
N214G214VgGcgTc33AY.430.000013
N214G214VgGcgTc33AY.470.000093
N214G214VgGcgTc33B.1.20.000026
N214G214VgGcgTc23B.1.2430.000139
N214G214VgGcgTc22AD.20.000438
N214G214VgGcgTc22AY.1030.000012
N214G214VgGcgTc22AY.440.000012
N214G214VgGcgTc22AY.46.60.000144
N214G214VgGcgTc22B.1.3810.015625
N214G214VgGcgTc22B.1.617.10.000258
N214G214VgGcgTc11AY.1020.000027
N214G214VgGcgTc11AY.4.20.000022
N214G214VgGcgTc11AY.4.2.10.000149
N214G214VgGcgTc11AY.420.00004
N214G214VgGcgTc11AY.50.000021
N214G214VgGcgTc11AY.530.000288
N214G214VgGcgTc11AY.60.000041
N214G214VgGcgTc11AY.610.000105
N214G214VgGcgTc11AY.70.000196
N214G214VgGcgTc11AY.75.10.00018
N214G214VgGcgTc11B0.000128
N214G214VgGcgTc11B.1.1.2220.000204
N214G214VgGcgTc11B.1.1.250.000569
N214G214VgGcgTc11B.1.1.3060.000438
N214G214VgGcgTc11B.1.1.3180.000302
N214G214VgGcgTc11B.1.1.4340.000349
N214G214VgGcgTc11B.1.1600.000031
N214G214VgGcgTc11B.1.177.860.000183
N214G214VgGcgTc11B.1.2100.002132
N214G214VgGcgTc11B.1.2210.000071
N214G214VgGcgTc11B.1.3510.00003
N214G214VgGcgTc11B.1.36.180.00042
N214G214VgGcgTc11B.1.4240.008065
N214G214VgGcgTc11B.1.4290.000024
N214G214VgGcgTc11B.1.4590.004082
N214G214VgGcgTc11B.400.000364
N214G214VgGcgTc11P.10.000016
N214G214VgGcgTc11P.1.10.000318
N214G214VgGcgTc11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.