CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 214 & Codon = Agc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N214G214SnonsynGgcAgc7056700.95035528913-28915

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N214G214SGgcAgc670705All0.000128
N214G214SGgcAgc161161B.1.4270.00813
N214G214SGgcAgc122122B.1.617.20.000459
N214G214SGgcAgc8686B.1.1.70.000077
N214G214SGgcAgc6262AY.430.000275
N214G214SGgcAgc2156C.370.002437
N214G214SGgcAgc2929B.1.1.4351
N214G214SGgcAgc2525AY.1160.007169
N214G214SGgcAgc1414AY.40.000022
N214G214SGgcAgc1414B.1.20.000123
N214G214SGgcAgc1010B.1.1770.000132
N214G214SGgcAgc99AY.1030.000056
N214G214SGgcAgc88B.1.2580.000532
N214G214SGgcAgc77B.10.000064
N214G214SGgcAgc77B.1.2430.000487
N214G214SGgcAgc66AY.30.00006
N214G214SGgcAgc55P.10.000079
N214G214SGgcAgc44AY.390.000099
N214G214SGgcAgc44AY.50.000083
N214G214SGgcAgc44B.1.10.000073
N214G214SGgcAgc44B.1.1.330.001684
N214G214SGgcAgc44B.1.6210.000354
N214G214SGgcAgc33AY.250.000018
N214G214SGgcAgc33AY.470.000093
N214G214SGgcAgc33B.1.177.560.002003
N214G214SGgcAgc33B.1.2210.000213
N214G214SGgcAgc33B.1.4290.000071
N214G214SGgcAgc22AY.270.000129
N214G214SGgcAgc22AY.39.10.000079
N214G214SGgcAgc22AY.440.000012
N214G214SGgcAgc22AY.90.000135
N214G214SGgcAgc22B.1.1.250.001137
N214G214SGgcAgc22B.1.1.3350.025974
N214G214SGgcAgc22B.1.36.70.008
N214G214SGgcAgc22C.360.001821
N214G214SGgcAgc22P.1.100.000539
N214G214SGgcAgc22P.1.70.000639
N214G214SGgcAgc11A0.000387
N214G214SGgcAgc11AY.1020.000027
N214G214SGgcAgc11AY.1100.000113
N214G214SGgcAgc11AY.1170.000085
N214G214SGgcAgc11AY.1200.000037
N214G214SGgcAgc11AY.140.000088
N214G214SGgcAgc11AY.200.000039
N214G214SGgcAgc11AY.230.00007
N214G214SGgcAgc11AY.260.000028
N214G214SGgcAgc11AY.320.000532
N214G214SGgcAgc11AY.360.000148
N214G214SGgcAgc11AY.4.50.000107
N214G214SGgcAgc11AY.570.000656
N214G214SGgcAgc11AY.640.000595
N214G214SGgcAgc11AY.70.000196
N214G214SGgcAgc11AY.75.10.00018
N214G214SGgcAgc11AY.980.000079
N214G214SGgcAgc11B.1.1.1700.001247
N214G214SGgcAgc11B.1.1.700.000341
N214G214SGgcAgc11B.1.1600.000031
N214G214SGgcAgc11B.1.177.120.000152
N214G214SGgcAgc11B.1.177.230.003236
N214G214SGgcAgc11B.1.3360.002439
N214G214SGgcAgc11B.1.3510.00003
N214G214SGgcAgc11B.1.36.290.000517
N214G214SGgcAgc11B.1.466.20.000391
N214G214SGgcAgc11B.1.5260.000024
N214G214SGgcAgc11B.1.617.10.000129
N214G214SGgcAgc11P.1.120.000484

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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