CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 214 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N214G214deldelGGC---40524052128913-28915

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N214G214delGGC---40524052All0.000775
N214G214delGGC---10171017B.1.617.20.003829
N214G214delGGC---522522AY.40.000812
N214G214delGGC---398398AY.1190.014053
N214G214delGGC---286286AY.98.10.013851
N214G214delGGC---285285AY.430.001263
N214G214delGGC---227227AY.1030.001409
N214G214delGGC---137137AY.440.000834
N214G214delGGC---9090B.1.5090.077922
N214G214delGGC---8585AY.250.000511
N214G214delGGC---7979AY.1020.002095
N214G214delGGC---7373AY.330.004875
N214G214delGGC---6666AY.30.000656
N214G214delGGC---6565AY.50.001342
N214G214delGGC---5959AY.4.20.00128
N214G214delGGC---5151AY.46.60.003683
N214G214delGGC---5151B.1.1.70.000046
N214G214delGGC---5050AY.60.002056
N214G214delGGC---4242AY.1180.002631
N214G214delGGC---4141AY.390.001013
N214G214delGGC---3737AY.1100.004169
N214G214delGGC---3535AY.1000.00161
N214G214delGGC---2525B.1.4370.520833
N214G214delGGC---2323AY.1200.000855
N214G214delGGC---1818AY.450.00219
N214G214delGGC---1515AY.770.016911
N214G214delGGC---1414AY.290.000221
N214G214delGGC---1414AY.360.002075
N214G214delGGC---1414AY.980.001106
N214G214delGGC---1414AY.99.20.00129
N214G214delGGC---1212AY.1160.003441
N214G214delGGC---1212AY.200.000466
N214G214delGGC---1010AY.1210.001353
N214G214delGGC---1010AY.460.001041
N214G214delGGC---1010B.10.000092
N214G214delGGC---99AY.4.50.000967
N214G214delGGC---88AY.3.10.000682
N214G214delGGC---77AY.1170.000592
N214G214delGGC---77B.1.1.4860.011041
N214G214delGGC---66AY.230.000418
N214G214delGGC---66AY.39.10.000238
N214G214delGGC---66AY.420.000241
N214G214delGGC---66AY.900.004107
N214G214delGGC---55AY.840.002187
N214G214delGGC---44AY.340.000388
N214G214delGGC---44AY.410.001176
N214G214delGGC---33AY.210.005693
N214G214delGGC---33AY.260.000085
N214G214delGGC---33AY.70.000588
N214G214delGGC---33AY.850.001282
N214G214delGGC---33AY.930.000819
N214G214delGGC---33B.1.5960.000261
N214G214delGGC---33B.40.006623
N214G214delGGC---22AE.80.000978
N214G214delGGC---22AY.1050.001286
N214G214delGGC---22AY.1060.00067
N214G214delGGC---22AY.1070.000932
N214G214delGGC---22AY.1080.002205
N214G214delGGC---22AY.120.000632
N214G214delGGC---22AY.29.10.000441
N214G214delGGC---22AY.46.40.000329
N214G214delGGC---22AY.500.001599
N214G214delGGC---22AY.750.000112
N214G214delGGC---22AY.9.20.000073
N214G214delGGC---22AY.920.000575
N214G214delGGC---22B.1.10.000036
N214G214delGGC---22B.1.1.3700.025316
N214G214delGGC---22B.1.1600.000062
N214G214delGGC---22B.1.3200.002491
N214G214delGGC---22B.1.3510.000059
N214G214delGGC---22P.1.140.000096
N214G214delGGC---11AY.116.10.000311
N214G214delGGC---11AY.120.10.000321
N214G214delGGC---11AY.120.20.001285
N214G214delGGC---11AY.120.2.10.000498
N214G214delGGC---11AY.16.10.00047
N214G214delGGC---11AY.320.000532
N214G214delGGC---11AY.34.10.00051
N214G214delGGC---11AY.39.1.10.000725
N214G214delGGC---11AY.39.20.001541
N214G214delGGC---11AY.400.000964
N214G214delGGC---11AY.46.50.000198
N214G214delGGC---11AY.470.000031
N214G214delGGC---11AY.5.30.000337
N214G214delGGC---11AY.5.40.000277
N214G214delGGC---11AY.510.000909
N214G214delGGC---11AY.7.10.000113
N214G214delGGC---11AY.760.004831
N214G214delGGC---11AY.790.001211
N214G214delGGC---11AY.830.001724
N214G214delGGC---11AY.880.000884
N214G214delGGC---11AY.890.004902
N214G214delGGC---11AY.910.00073
N214G214delGGC---11AY.960.002075
N214G214delGGC---11B.1.1.1860.003436
N214G214delGGC---11B.1.1.2140.000055
N214G214delGGC---11B.1.1.280.000311
N214G214delGGC---11B.1.1.3030.002762
N214G214delGGC---11B.1.1.3070.002532
N214G214delGGC---11B.1.1.330.000421
N214G214delGGC---11B.1.1.390.00051
N214G214delGGC---11B.1.1.500.000679
N214G214delGGC---11B.1.1.5190.00004
N214G214delGGC---11B.1.1770.000013
N214G214delGGC---11B.1.177.210.000076
N214G214delGGC---11B.1.177.630.002703
N214G214delGGC---11B.1.177.730.000566
N214G214delGGC---11B.1.20.000009
N214G214delGGC---11B.1.2580.000067
N214G214delGGC---11B.1.6210.000089
N214G214delGGC---11C.37.10.002618

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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