CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 213

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N213N213YnonsynAatTat37403740128910-28912
N213N213NsynaaTaaC687687128910-28912
N213N213deldelAAT---514514128910-28912
N213N213SnonsynaAtaGt244244128910-28912
N213N213InonsynaAtaTt212212128910-28912
N213N213DnonsynAatGat123123128910-28912
N213N213TnonsynaAtaCt8888128910-28912
N213N213KnonsynaaTaaA54480.88888928910-28912
N213N213KnonsynaaTaaG5460.11111128910-28912
N213N213del1delaaTaa-15110.73333328910-28912
N213N213del1delAat-at1520.13333328910-28912
N213N213del1delAaT-aN1510.066666728910-28912
N213N213del1delAAt-Ct1510.066666728910-28912
N213N213HnonsynAatCat1414128910-28912
N213N213del2delaATa--22128910-28912
N213N213QnonsynAaTCaA22128910-28912
N213N213GnonsynAAtGGt11128910-28912

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N213N213YAatTat37403740All0.000715
N213N213YAatTat27872787B.1.6280.98203
N213N213NaaTaaC687687All0.000131
N213N213delAAT---514514All0.000098
N213N213YAatTat390390B.10.003572
N213N213YAatTat288288B.1.6340.986301
N213N213SaAtaGt244244All0.000047
N213N213NaaTaaC216216AD.10.888889
N213N213IaAtaTt212212All0.000041
N213N213delAAT---212212AY.40.00033
N213N213IaAtaTt137137B.1.1.5280.658654
N213N213NaaTaaC137137B.1.1.70.000123
N213N213YAatTat132132B.1.6320.885906
N213N213DAatGat123123All0.000024
N213N213TaAtaCt8888All0.000017
N213N213DAatGat8181B.1.1.70.000073
N213N213NaaTaaC6363B.120.403846
N213N213KaaTaaA4854All0.000009
N213N213KaaTaaG654All0.000001
N213N213SaAtaGt5050B.1.6370.003654
N213N213SaAtaGt4848B.1.1.70.000043
N213N213delAAT---4747B.1.1.70.000042
N213N213NaaTaaC4444AY.40.000068
N213N213SaAtaGt4343AY.430.000191
N213N213delAAT---4242AY.4.20.000911
N213N213TaAtaCt3131AY.430.000137
N213N213YAatTat3131B.1.10.000562
N213N213NaaTaaC2929AY.440.000177
N213N213NaaTaaC2828B.1.617.20.000105
N213N213delAAT---2626AY.1030.000161
N213N213delAAT---2626AY.430.000115
N213N213delAAT---2121AY.1200.000781
N213N213delAAT---2121AY.30.000209
N213N213KaaTaaA2121AY.420.000845
N213N213IaAtaTt1818B.1.4620.130435
N213N213NaaTaaC1616AY.4.20.000347
N213N213del1aaTaa-1115All0.000002
N213N213del1Aat-at215All0
N213N213del1AaT-aN115All0
N213N213del1AAt-Ct115All0
N213N213YAatTat1515B.1.6270.030303
N213N213HAatCat1414All0.000003
N213N213delAAT---1414AY.250.000084
N213N213delAAT---1313B.10.000119
N213N213NaaTaaC1212AY.1030.000075
N213N213TaAtaCt1212B.1.1.70.000011
N213N213YAatTat1212P.1.120.005808
N213N213SaAtaGt1111AY.440.000067
N213N213delAAT---1111AY.440.000067
N213N213NaaTaaC1010B.1.2210.00071
N213N213delAAT---1010B.1.617.20.000038
N213N213NaaTaaC1010R.10.0009
N213N213NaaTaaC99AY.1180.000564
N213N213IaAtaTt99AY.290.000142
N213N213NaaTaaC99B.10.000082
N213N213HAatCat99B.1.10.000163
N213N213IaAtaTt99B.1.10.000163
N213N213TaAtaCt88AY.30.00008
N213N213IaAtaTt88AY.46.60.000578
N213N213SaAtaGt88B.1.1.2140.000444
N213N213NaaTaaC77AY.240.003017
N213N213SaAtaGt77AY.40.000011
N213N213NaaTaaC77AY.430.000031
N213N213SaAtaGt77AY.60.000288
N213N213NaaTaaC77B.1.20.000062
N213N213delAAT---66AY.1000.000276
N213N213NaaTaaC66AY.1020.000159
N213N213NaaTaaC66AY.290.000095
N213N213NaaTaaC66AY.390.000148
N213N213DAatGat66AY.40.000009
N213N213SaAtaGt66B.10.000055
N213N213IaAtaTt66B.1.1.340.078947
N213N213YAatTat66B.1.1.70.000005
N213N213YAatTat66B.1.2430.000418
N213N213KaaTaaA66B.1.3510.000178
N213N213DAatGat55AY.1030.000031
N213N213SaAtaGt55AY.260.000142
N213N213delAAT---55AY.390.000124
N213N213IaAtaTt55AY.40.000008
N213N213DAatGat55AY.430.000022
N213N213NaaTaaC55AY.630.001934
N213N213NaaTaaC55B.1.1770.000066
N213N213YAatTat55B.1.2320.002687
N213N213SaAtaGt55B.1.6200.00473
N213N213YAatTat44AY.270.000259
N213N213SaAtaGt44AY.30.00004
N213N213DAatGat44AY.30.00004
N213N213TaAtaCt44AY.40.000006
N213N213delAAT---44AY.50.000083
N213N213SaAtaGt44B.1.617.20.000015
N213N213KaaTaaA34B.1.617.20.000011
N213N213KaaTaaG14B.1.617.20.000004
N213N213delAAT---33AY.210.005693
N213N213NaaTaaC33AY.250.000018
N213N213SaAtaGt33AY.270.000194
N213N213del1aaTaa-33AY.420.000121
N213N213IaAtaTt33B.10.000027
N213N213delAAT---33B.1.1.1700.003741
N213N213NaaTaaC33B.1.1.2220.000612
N213N213NaaTaaC33B.1.1.2940.003797
N213N213KaaTaaA33B.1.1.70.000003
N213N213KaaTaaA33B.1.1600.000094
N213N213YAatTat33B.1.20.000026
N213N213SaAtaGt33B.1.20.000026
N213N213TaAtaCt33B.1.20.000026
N213N213SaAtaGt33B.1.4290.000071
N213N213DAatGat33B.1.5250.000339
N213N213DAatGat33B.1.617.20.000011
N213N213YAatTat33B.520.030303
N213N213SaAtaGt33C.70.103448
N213N213NaaTaaC33D.20.000225
N213N213TaAtaCt33P.10.000047
N213N213YAatTat22A0.000774
N213N213YAatTat22A.10.000564
N213N213TaAtaCt22A.2.5.20.003145
N213N213QAaTCaA22All0
N213N213del2aATa--22All0
N213N213YAatTat22AY.1000.000092
N213N213delAAT---22AY.1020.000053
N213N213IaAtaTt22AY.1020.000053
N213N213DAatGat22AY.1020.000053
N213N213delAAT---22AY.200.000078
N213N213SaAtaGt22AY.200.000078
N213N213delAAT---22AY.230.000139
N213N213NaaTaaC22AY.230.000139
N213N213KaaTaaA22AY.260.000057
N213N213NaaTaaC22AY.270.000129
N213N213TaAtaCt22AY.290.000032
N213N213NaaTaaC22AY.30.00002
N213N213SaAtaGt22AY.390.000049
N213N213YAatTat22AY.440.000012
N213N213delAAT---22AY.460.000208
N213N213TaAtaCt22AY.470.000062
N213N213DAatGat22AY.50.000041
N213N213delAAT---22AY.500.001599
N213N213SaAtaGt22AY.510.001818
N213N213YAatTat22AY.610.00021
N213N213YAatTat22AY.960.004149
N213N213TaAtaCt22AY.960.004149
N213N213NaaTaaC22AY.98.10.000097
N213N213DAatGat22AY.99.20.000184
N213N213KaaTaaA12B.10.000009
N213N213KaaTaaG12B.10.000009
N213N213NaaTaaC22B.1.10.000036
N213N213SaAtaGt22B.1.10.000036
N213N213SaAtaGt22B.1.1.2220.000408
N213N213delAAT---22B.1.1.3700.025316
N213N213SaAtaGt22B.1.1600.000062
N213N213YAatTat22B.1.177.730.001133
N213N213IaAtaTt22B.1.20.000018
N213N213NaaTaaC22B.1.258.170.000208
N213N213delAAT---22B.1.3510.000059
N213N213YAatTat22B.1.4740.003802
N213N213NaaTaaC22B.1.4970.00063
N213N213IaAtaTt22B.1.5260.000047
N213N213SaAtaGt22B.1.5610.000794
N213N213YAatTat22B.1.617.20.000008
N213N213TaAtaCt22B.1.6230.001073
N213N213YAatTat22B.550.0059
N213N213SaAtaGt22C.370.000232
N213N213SaAtaGt22P.10.000032
N213N213SaAtaGt22P.1.120.000968
N213N213delAAT---22P.1.140.000096
N213N213TaAtaCt110.055556
N213N213NaaTaaC11A.2.5.10.004808
N213N213YAatTat11A.2.5.20.001572
N213N213GAAtGGt11All0
N213N213NaaTaaC11AY.1000.000046
N213N213DAatGat11AY.1000.000046
N213N213TaAtaCt11AY.1010.00049
N213N213TaAtaCt11AY.1020.000027
N213N213SaAtaGt11AY.1020.000027
N213N213YAatTat11AY.1030.000006
N213N213del2aATa--11AY.1030.000006
N213N213TaAtaCt11AY.1030.000006
N213N213delAAT---11AY.1100.000113
N213N213delAAT---11AY.1160.000287
N213N213NaaTaaC11AY.1170.000085
N213N213delAAT---11AY.1170.000085
N213N213delAAT---11AY.1180.000063
N213N213NaaTaaC11AY.1190.000035
N213N213delAAT---11AY.1190.000035
N213N213delAAT---11AY.120.000316
N213N213delAAT---11AY.120.20.001285
N213N213NaaTaaC11AY.140.000088
N213N213delAAT---11AY.16.10.00047
N213N213NaaTaaC11AY.200.000039
N213N213SaAtaGt11AY.230.00007
N213N213KaaTaaG11AY.250.000006
N213N213SaAtaGt11AY.250.000006
N213N213DAatGat11AY.250.000006
N213N213TaAtaCt11AY.260.000028
N213N213IaAtaTt11AY.260.000028
N213N213YAatTat11AY.260.000028
N213N213SaAtaGt11AY.290.000016
N213N213delAAT---11AY.29.10.000221
N213N213del1AAt-Ct11AY.30.00001
N213N213YAatTat11AY.30.00001
N213N213GAAtGGt11AY.30.00001
N213N213NaaTaaC11AY.300.000396
N213N213NaaTaaC11AY.330.000067
N213N213NaaTaaC11AY.350.000233
N213N213YAatTat11AY.350.000233
N213N213delAAT---11AY.360.000148
N213N213NaaTaaC11AY.370.000316
N213N213NaaTaaC11AY.380.000499
N213N213del1aaTaa-11AY.390.000025
N213N213YAatTat11AY.39.10.00004
N213N213KaaTaaA11AY.40.000002
N213N213del1aaTaa-11AY.40.000002
N213N213YAatTat11AY.4.20.000022
N213N213IaAtaTt11AY.4.2.10.000149
N213N213NaaTaaC11AY.4.2.10.000149
N213N213TaAtaCt11AY.4.50.000107
N213N213delAAT---11AY.4.50.000107
N213N213del1AaT-aN11AY.4.50.000107
N213N213delAAT---11AY.400.000964
N213N213NaaTaaC11AY.400.000964
N213N213delAAT---11AY.420.00004
N213N213del1aaTaa-11AY.430.000004
N213N213KaaTaaA11AY.430.000004
N213N213del1aaTaa-11AY.440.000006
N213N213DAatGat11AY.440.000006
N213N213HAatCat11AY.470.000031
N213N213NaaTaaC11AY.50.000021
N213N213YAatTat11AY.50.000021
N213N213TaAtaCt11AY.550.000917
N213N213DAatGat11AY.590.00053
N213N213YAatTat11AY.590.00053
N213N213delAAT---11AY.60.000041
N213N213NaaTaaC11AY.60.000041
N213N213SaAtaGt11AY.610.000105
N213N213NaaTaaC11AY.610.000105
N213N213KaaTaaA11AY.690.000187
N213N213del1aaTaa-11AY.70.000196
N213N213NaaTaaC11AY.7.20.000559
N213N213KaaTaaA11AY.730.000665
N213N213delAAT---11AY.750.000056
N213N213SaAtaGt11AY.750.000056
N213N213YAatTat11AY.750.000056
N213N213del1aaTaa-11AY.870.000833
N213N213IaAtaTt11AY.9.10.000084
N213N213KaaTaaA11AY.9.20.000037
N213N213NaaTaaC11AY.9.20.000037
N213N213SaAtaGt11AY.9.20.000037
N213N213del1aaTaa-11AY.900.000684
N213N213del2aATa--11AY.900.000684
N213N213delAAT---11AY.920.000287
N213N213delAAT---11AY.960.002075
N213N213KaaTaaA11AY.98.10.000048
N213N213delAAT---11AY.99.20.000092
N213N213NaaTaaC11B0.000128
N213N213YAatTat11B0.000128
N213N213DAatGat11B.10.000009
N213N213del1Aat-at11B.10.000009
N213N213QAaTCaA11B.10.000009
N213N213HAatCat11B.10.000009
N213N213TaAtaCt11B.10.000009
N213N213delAAT---11B.1.10.000018
N213N213YAatTat11B.1.1.10.000327
N213N213SaAtaGt11B.1.1.100.001115
N213N213TaAtaCt11B.1.1.1410.002012
N213N213NaaTaaC11B.1.1.1760.000439
N213N213delAAT---11B.1.1.2140.000055
N213N213DAatGat11B.1.1.2160.00089
N213N213TaAtaCt11B.1.1.2220.000204
N213N213DAatGat11B.1.1.280.000311
N213N213delAAT---11B.1.1.280.000311
N213N213delAAT---11B.1.1.3030.002762
N213N213SaAtaGt11B.1.1.3060.000438
N213N213delAAT---11B.1.1.3070.002532
N213N213SaAtaGt11B.1.1.3180.000302
N213N213delAAT---11B.1.1.330.000421
N213N213YAatTat11B.1.1.3890.006061
N213N213SaAtaGt11B.1.1.4640.001473
N213N213delAAT---11B.1.1.500.000679
N213N213YAatTat11B.1.1.5190.00004
N213N213YAatTat11B.1.1.580.005376
N213N213YAatTat11B.1.1.700.000341
N213N213IaAtaTt11B.1.1240.007812
N213N213IaAtaTt11B.1.1460.004237
N213N213NaaTaaC11B.1.1600.000031
N213N213delAAT---11B.1.1600.000031
N213N213TaAtaCt11B.1.1600.000031
N213N213DAatGat11B.1.1770.000013
N213N213HAatCat11B.1.1770.000013
N213N213delAAT---11B.1.177.210.000076
N213N213TaAtaCt11B.1.177.230.003236
N213N213NaaTaaC11B.1.177.580.001332
N213N213YAatTat11B.1.177.60.000977
N213N213KaaTaaG11B.1.177.600.000218
N213N213delAAT---11B.1.177.630.002703
N213N213delAAT---11B.1.177.650.000665
N213N213delAAT---11B.1.20.000009
N213N213KaaTaaG11B.1.20.000009
N213N213YAatTat11B.1.2210.000071
N213N213HAatCat11B.1.2210.000071
N213N213QAaTCaA11B.1.2210.000071
N213N213KaaTaaA11B.1.2210.000071
N213N213NaaTaaC11B.1.2320.000537
N213N213YAatTat11B.1.2410.000812
N213N213YAatTat11B.1.2470.014925
N213N213IaAtaTt11B.1.2580.000067
N213N213YAatTat11B.1.258.160.001637
N213N213IaAtaTt11B.1.258.180.1
N213N213IaAtaTt11B.1.2910.019231
N213N213YAatTat11B.1.3370.005587
N213N213YAatTat11B.1.3510.00003
N213N213TaAtaCt11B.1.3510.00003
N213N213YAatTat11B.1.36.100.004785
N213N213TaAtaCt11B.1.36.170.000494
N213N213NaaTaaC11B.1.36.350.002604
N213N213YAatTat11B.1.3620.001541
N213N213YAatTat11B.1.3750.00082
N213N213HAatCat11B.1.4040.001302
N213N213DAatGat11B.1.4220.000812
N213N213YAatTat11B.1.4290.000024
N213N213NaaTaaC11B.1.4650.003802
N213N213NaaTaaC11B.1.4700.001404
N213N213NaaTaaC11B.1.5250.000113
N213N213YAatTat11B.1.5750.000303
N213N213NaaTaaC11B.1.5760.000907
N213N213SaAtaGt11B.1.5770.000687
N213N213YAatTat11B.1.5800.004065
N213N213SaAtaGt11B.1.5820.000491
N213N213del1aaTaa-11B.1.5950.000261
N213N213YAatTat11B.1.5950.000261
N213N213delAAT---11B.1.5960.000087
N213N213YAatTat11B.1.5960.000087
N213N213TaAtaCt11B.1.5960.000087
N213N213TaAtaCt11B.1.617.20.000004
N213N213IaAtaTt11B.1.617.20.000004
N213N213del1Aat-at11B.1.617.20.000004
N213N213YAatTat11B.1.6190.000871
N213N213KaaTaaA11B.1.6210.000089
N213N213YAatTat11B.1.6230.000536
N213N213YAatTat11B.1.88.10.004808
N213N213IaAtaTt11B.400.000364
N213N213IaAtaTt11C.350.000774
N213N213delAAT---11C.37.10.002618
N213N213delAAT---11D.20.000075
N213N213KaaTaaG11D.20.000075
N213N213NaaTaaC11P.10.000016
N213N213YAatTat11P.10.000016
N213N213DAatGat11P.10.000016
N213N213delAAT---11P.10.000016
N213N213KaaTaaA11P.10.000016
N213N213YAatTat11P.1.140.000048
N213N213YAatTat11P.1.160.000374
N213N213SaAtaGt11P.1.170.000162
N213N213TaAtaCt11P.20.000187
N213N213YAatTat11P.30.001595