CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 212

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	212	G212G		syn	ggC	ggT	6598	6553	0.99318	28907-28909
N	212	G212G		syn	ggC	ggA	6598	44	0.00666869	28907-28909
N	212	G212G		syn	ggC	ggG	6598	1	0.000151561	28907-28909
N	212	G212V		nonsyn	gGc	gTc	4613	4612	0.999783	28907-28909
N	212	G212V		nonsyn	gGC	gTT	4613	1	0.000216779	28907-28909
N	212	G212C		nonsyn	Ggc	Tgc	1959	1959	1	28907-28909
N	212	G212del		del	GGC	---	877	877	1	28907-28909
N	212	G212S		nonsyn	Ggc	Agc	577	577	1	28907-28909
N	212	G212D		nonsyn	gGc	gAc	439	439	1	28907-28909
N	212	G212R		nonsyn	Ggc	Cgc	32	32	1	28907-28909
N	212	G212A		nonsyn	gGc	gCc	20	20	1	28907-28909
N	212	G212H		nonsyn	GGc	CAc	3	3	1	28907-28909
N	212	G212del2		del	gGC	g--	3	2	0.666667	28907-28909
N	212	G212del2		del	GGC	--N	3	1	0.333333	28907-28909
N	212	G212F		nonsyn	GGc	TTc	2	2	1	28907-28909
N	212	G212del1		del	Ggc	-gc	2	2	1	28907-28909
N	212	G212L		nonsyn	GGC	CTT	1	1	1	28907-28909
N	212	G212W		nonsyn	GgC	TgG	1	1	1	28907-28909
N	212	G212N		nonsyn	GGc	AAc	1	1	1	28907-28909
N	212	G212I		nonsyn	GGc	ATc	1	1	1	28907-28909

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	212	G212G	ggC	ggT	6553	6598	All	0.001253
N	212	G212G	ggC	ggA	44	6598	All	0.000008
N	212	G212G	ggC	ggG	1	6598	All	0
N	212	G212G	ggC	ggT	5219	5219	AY.103	0.032405
N	212	G212V	gGc	gTc	4612	4613	All	0.000882
N	212	G212V	gGC	gTT	1	4613	All	0
N	212	G212C	Ggc	Tgc	1959	1959	All	0.000375
N	212	G212V	gGc	gTc	1742	1742	C.36.3	0.988088
N	212	G212V	gGc	gTc	1067	1068	C.36	0.971767
N	212	G212V	gGC	gTT	1	1068	C.36	0.000911
N	212	G212del	GGC	---	877	877	All	0.000168
N	212	G212C	Ggc	Tgc	622	622	B.1.1.523	0.971875
N	212	G212S	Ggc	Agc	577	577	All	0.00011
N	212	G212G	ggC	ggT	522	522	B.1.617.2	0.001966
N	212	G212D	gGc	gAc	439	439	All	0.000084
N	212	G212V	gGc	gTc	328	328	C.36.3.1	0.891304
N	212	G212C	Ggc	Tgc	297	297	B.1.631	1
N	212	G212V	gGc	gTc	246	246	AY.26	0.006964
N	212	G212V	gGc	gTc	241	241	C.36.1	1
N	212	G212D	gGc	gAc	227	227	B.1.1.7	0.000203
N	212	G212del	GGC	---	203	203	AY.4	0.000316
N	212	G212G	ggC	ggT	181	192	B.1.1.7	0.000162
N	212	G212G	ggC	ggA	11	192	B.1.1.7	0.00001
N	212	G212del	GGC	---	190	190	B.1.1.7	0.00017
N	212	G212C	Ggc	Tgc	140	140	B.1.1.487	0.782123
N	212	G212S	Ggc	Agc	131	131	B.1.279	0.067283
N	212	G212C	Ggc	Tgc	115	115	B.1.1.453	0.974576
N	212	G212V	gGc	gTc	100	100	B.1.1.7	0.00009
N	212	G212S	Ggc	Agc	99	99	B.1.1.7	0.000089
N	212	G212V	gGc	gTc	96	96	AY.4	0.000149
N	212	G212C	Ggc	Tgc	95	95	B.1	0.00087
N	212	G212del	GGC	---	90	90	AY.103	0.000559
N	212	G212V	gGc	gTc	84	84	B.1	0.000769
N	212	G212G	ggC	ggT	77	80	AY.4	0.00012
N	212	G212G	ggC	ggA	3	80	AY.4	0.000005
N	212	G212G	ggC	ggT	76	77	AY.43	0.000337
N	212	G212G	ggC	ggA	1	77	AY.43	0.000004
N	212	G212C	Ggc	Tgc	74	74	B.1.1.7	0.000066
N	212	G212C	Ggc	Tgc	67	67	B.1.282	1
N	212	G212C	Ggc	Tgc	64	64	B.1.1	0.001161
N	212	G212V	gGc	gTc	62	62	B.1.1	0.001125
N	212	G212V	gGc	gTc	61	61	B.1.576	0.055304
N	212	G212C	Ggc	Tgc	57	57	B.1.539	1
N	212	G212V	gGc	gTc	55	55	B.1.617.2	0.000207
N	212	G212V	gGc	gTc	53	53	AY.103	0.000329
N	212	G212del	GGC	---	53	53	D.2	0.003977
N	212	G212D	gGc	gAc	52	52	AY.44	0.000317
N	212	G212D	gGc	gAc	43	43	AY.25	0.000259
N	212	G212G	ggC	ggT	42	42	AY.25	0.000253
N	212	G212del	GGC	---	42	42	AY.4.2	0.000911
N	212	G212C	Ggc	Tgc	37	37	B.1.243	0.002575
N	212	G212S	Ggc	Agc	37	37	B.1.404	0.048177
N	212	G212S	Ggc	Agc	37	37	B.1.429	0.000871
N	212	G212C	Ggc	Tgc	35	35	B.1.617.2	0.000132
N	212	G212del	GGC	---	33	33	AY.43	0.000146
N	212	G212R	Ggc	Cgc	32	32	All	0.000006
N	212	G212S	Ggc	Agc	31	31	B.1.1.222	0.006324
N	212	G212G	ggC	ggT	30	30	AY.5	0.000619
N	212	G212G	ggC	ggT	29	29	AY.107	0.013514
N	212	G212G	ggC	ggT	28	29	AY.44	0.00017
N	212	G212G	ggC	ggA	1	29	AY.44	0.000006
N	212	G212V	gGc	gTc	29	29	AY.61	0.003039
N	212	G212V	gGc	gTc	29	29	C.36.2	1
N	212	G212G	ggC	ggT	28	28	Q.3	0.004061
N	212	G212del	GGC	---	27	27	AY.3	0.000269
N	212	G212S	Ggc	Agc	26	26	AY.4	0.00004
N	212	G212del	GGC	---	26	26	AY.99.2	0.002396
N	212	G212S	Ggc	Agc	24	24	B.1	0.00022
N	212	G212V	gGc	gTc	24	24	B.1.1.519	0.000953
N	212	G212del	GGC	---	23	23	AY.25	0.000138
N	212	G212G	ggC	ggT	22	22	AY.12	0.006953
N	212	G212del	GGC	---	21	21	AY.120	0.000781
N	212	G212C	Ggc	Tgc	21	21	B.1.1.269	0.028417
N	212	G212A	gGc	gCc	20	20	All	0.000004
N	212	G212G	ggC	ggT	20	20	AY.4.2	0.000434
N	212	G212del	GGC	---	18	18	AY.44	0.00011
N	212	G212S	Ggc	Agc	18	18	B.1.177.81	0.003408
N	212	G212C	Ggc	Tgc	18	18	B.1.2	0.000158
N	212	G212G	ggC	ggT	17	18	B.1.429	0.0004
N	212	G212G	ggC	ggA	1	18	B.1.429	0.000024
N	212	G212del	GGC	---	18	18	B.1.617.2	0.000068
N	212	G212G	ggC	ggT	18	18	R.1	0.00162
N	212	G212C	Ggc	Tgc	17	17	AY.4	0.000026
N	212	G212V	gGc	gTc	17	17	AY.44	0.000103
N	212	G212V	gGc	gTc	17	17	B.1.1.1	0.005554
N	212	G212G	ggC	ggT	16	16	AY.118	0.001002
N	212	G212C	Ggc	Tgc	16	16	AY.26	0.000453
N	212	G212C	Ggc	Tgc	16	16	AY.27	0.001036
N	212	G212C	Ggc	Tgc	16	16	B.1.1.291	0.011878
N	212	G212del	GGC	---	16	16	B.1.1.519	0.000635
N	212	G212V	gGc	gTc	15	15	AY.118	0.00094
N	212	G212del	GGC	---	15	15	B.1	0.000137
N	212	G212V	gGc	gTc	14	14	AP.1	0.021021
N	212	G212V	gGc	gTc	14	14	AY.119	0.000494
N	212	G212G	ggC	ggT	13	14	B.1.1.519	0.000516
N	212	G212G	ggC	ggA	1	14	B.1.1.519	0.00004
N	212	G212C	Ggc	Tgc	14	14	B.1.199	0.057851
N	212	G212D	gGc	gAc	13	13	AY.4	0.00002
N	212	G212V	gGc	gTc	13	13	AY.43	0.000058
N	212	G212G	ggC	ggT	10	13	B.1	0.000092
N	212	G212G	ggC	ggA	2	13	B.1	0.000018
N	212	G212G	ggC	ggG	1	13	B.1	0.000009
N	212	G212C	Ggc	Tgc	13	13	B.1.1.318	0.003923
N	212	G212C	Ggc	Tgc	13	13	B.1.427	0.000656
N	212	G212V	gGc	gTc	13	13	C.17	0.722222
N	212	G212V	gGc	gTc	13	13	K.3	0.080247
N	212	G212C	Ggc	Tgc	13	13	P.1	0.000205
N	212	G212D	gGc	gAc	12	12	AY.103	0.000075
N	212	G212G	ggC	ggA	8	12	AY.29	0.000126
N	212	G212G	ggC	ggT	4	12	AY.29	0.000063
N	212	G212G	ggC	ggT	6	12	B.1.177	0.000079
N	212	G212G	ggC	ggA	6	12	B.1.177	0.000079
N	212	G212C	Ggc	Tgc	12	12	B.1.221	0.000852
N	212	G212S	Ggc	Agc	12	12	B.1.609	0.005753
N	212	G212G	ggC	ggT	11	11	AY.3	0.000109
N	212	G212V	gGc	gTc	11	11	AY.42	0.000443
N	212	G212S	Ggc	Agc	11	11	AY.43	0.000049
N	212	G212V	gGc	gTc	11	11	B.1.218	0.056701
N	212	G212G	ggC	ggT	10	10	AY.119	0.000353
N	212	G212R	Ggc	Cgc	10	10	AY.3	0.000099
N	212	G212V	gGc	gTc	10	10	AY.3	0.000099
N	212	G212G	ggC	ggT	10	10	AY.39	0.000247
N	212	G212C	Ggc	Tgc	10	10	B.1.258	0.000665
N	212	G212D	gGc	gAc	10	10	B.1.526	0.000235
N	212	G212G	ggC	ggT	9	9	AY.100	0.000414
N	212	G212S	Ggc	Agc	9	9	AY.44	0.000055
N	212	G212V	gGc	gTc	9	9	AY.75	0.000504
N	212	G212del	GGC	---	9	9	B.1.1	0.000163
N	212	G212S	Ggc	Agc	9	9	B.1.617.2	0.000034
N	212	G212C	Ggc	Tgc	9	9	P.1.17	0.001456
N	212	G212V	gGc	gTc	8	8	AY.120	0.000297
N	212	G212V	gGc	gTc	8	8	AY.33	0.000534
N	212	G212S	Ggc	Agc	8	8	AY.38	0.003994
N	212	G212S	Ggc	Agc	8	8	B.1.1	0.000145
N	212	G212G	ggC	ggT	6	8	B.1.1	0.000109
N	212	G212G	ggC	ggA	2	8	B.1.1	0.000036
N	212	G212G	ggC	ggT	8	8	B.1.1.1	0.002614
N	212	G212G	ggC	ggT	7	8	B.1.2	0.000062
N	212	G212G	ggC	ggA	1	8	B.1.2	0.000009
N	212	G212D	gGc	gAc	8	8	B.1.617.2	0.00003
N	212	G212V	gGc	gTc	7	7	AY.27	0.000453
N	212	G212V	gGc	gTc	7	7	B.1.1.294	0.008861
N	212	G212C	Ggc	Tgc	7	7	B.1.36.35	0.018229
N	212	G212S	Ggc	Agc	7	7	B.1.596	0.00061
N	212	G212G	ggC	ggT	7	7	D.2	0.000525
N	212	G212V	gGc	gTc	7	7	P.1	0.00011
N	212	G212V	gGc	gTc	7	7	P.6	0.022013
N	212	G212C	Ggc	Tgc	6	6	AE.8	0.002934
N	212	G212del	GGC	---	6	6	AY.100	0.000276
N	212	G212G	ggC	ggT	6	6	AY.102	0.000159
N	212	G212S	Ggc	Agc	6	6	AY.117	0.000507
N	212	G212G	ggC	ggT	6	6	AY.37	0.001896
N	212	G212del	GGC	---	6	6	AY.39	0.000148
N	212	G212D	gGc	gAc	6	6	AY.43	0.000027
N	212	G212C	Ggc	Tgc	6	6	B.1.1.37	0.001157
N	212	G212S	Ggc	Agc	6	6	B.1.177	0.000079
N	212	G212C	Ggc	Tgc	6	6	B.1.351	0.000178
N	212	G212G	ggC	ggT	6	6	P.1	0.000095
N	212	G212V	gGc	gTc	5	5	AY.23	0.000349
N	212	G212G	ggC	ggT	5	5	AY.23	0.000349
N	212	G212V	gGc	gTc	5	5	AY.25	0.00003
N	212	G212A	gGc	gCc	5	5	AY.61	0.000524
N	212	G212G	ggC	ggT	5	5	AY.9	0.000338
N	212	G212S	Ggc	Agc	5	5	B.1.1.317	0.002058
N	212	G212V	gGc	gTc	5	5	B.1.1.318	0.001509
N	212	G212C	Ggc	Tgc	5	5	B.1.1.33	0.002104
N	212	G212V	gGc	gTc	5	5	B.1.177	0.000066
N	212	G212V	gGc	gTc	5	5	B.1.177.7	0.000824
N	212	G212V	gGc	gTc	5	5	B.1.2	0.000044
N	212	G212V	gGc	gTc	5	5	B.1.302	0.066667
N	212	G212C	Ggc	Tgc	5	5	P.1.14	0.000239
N	212	G212V	gGc	gTc	4	4	AY.102	0.000106
N	212	G212del	GGC	---	4	4	AY.102	0.000106
N	212	G212G	ggC	ggT	3	4	AY.113	0.000427
N	212	G212G	ggC	ggA	1	4	AY.113	0.000142
N	212	G212del	GGC	---	4	4	AY.117	0.000338
N	212	G212G	ggC	ggT	4	4	AY.120.1	0.001284
N	212	G212R	Ggc	Cgc	4	4	AY.13	0.000644
N	212	G212G	ggC	ggT	4	4	AY.20	0.000155
N	212	G212S	Ggc	Agc	4	4	AY.25	0.000024
N	212	G212S	Ggc	Agc	4	4	AY.3	0.00004
N	212	G212D	gGc	gAc	4	4	AY.39.1	0.000158
N	212	G212R	Ggc	Cgc	4	4	AY.4	0.000006
N	212	G212S	Ggc	Agc	4	4	AY.4.2	0.000087
N	212	G212C	Ggc	Tgc	4	4	AY.44	0.000024
N	212	G212A	gGc	gCc	4	4	AY.46.4	0.000658
N	212	G212D	gGc	gAc	4	4	AY.47	0.000124
N	212	G212del	GGC	---	4	4	AY.5	0.000083
N	212	G212C	Ggc	Tgc	4	4	AY.61	0.000419
N	212	G212S	Ggc	Agc	4	4	AY.74	0.000463
N	212	G212V	gGc	gTc	4	4	AY.74	0.000463
N	212	G212V	gGc	gTc	4	4	AY.75.1	0.000721
N	212	G212C	Ggc	Tgc	4	4	AY.9.1	0.000335
N	212	G212R	Ggc	Cgc	4	4	B.1	0.000037
N	212	G212D	gGc	gAc	4	4	B.1	0.000037
N	212	G212G	ggC	ggT	4	4	B.1.1.170	0.004988
N	212	G212C	Ggc	Tgc	4	4	B.1.1.284	0.00043
N	212	G212V	gGc	gTc	4	4	B.1.1.326	0.007042
N	212	G212C	Ggc	Tgc	4	4	B.1.1.362	0.022472
N	212	G212C	Ggc	Tgc	4	4	B.1.1.519	0.000159
N	212	G212S	Ggc	Agc	4	4	B.1.324	0.006421
N	212	G212D	gGc	gAc	4	4	B.1.351	0.000119
N	212	G212V	gGc	gTc	4	4	B.1.366	0.019512
N	212	G212C	Ggc	Tgc	4	4	B.1.443	0.018692
N	212	G212G	ggC	ggT	4	4	B.1.596	0.000349
N	212	G212V	gGc	gTc	4	4	B.1.609	0.001918
N	212	G212S	Ggc	Agc	4	4	P.1	0.000063
N	212	G212H	GGc	CAc	3	3	All	0.000001
N	212	G212del2	gGC	g--	2	3	All	0
N	212	G212del2	GGC	--N	1	3	All	0
N	212	G212S	Ggc	Agc	3	3	AY.102	0.00008
N	212	G212S	Ggc	Agc	3	3	AY.103	0.000019
N	212	G212V	gGc	gTc	3	3	AY.113	0.000427
N	212	G212del	GGC	---	3	3	AY.118	0.000188
N	212	G212del	GGC	---	3	3	AY.21	0.005693
N	212	G212C	Ggc	Tgc	3	3	AY.25	0.000018
N	212	G212G	ggC	ggT	3	3	AY.3.1	0.000256
N	212	G212G	ggC	ggT	3	3	AY.4.4	0.001227
N	212	G212C	Ggc	Tgc	3	3	AY.43	0.000013
N	212	G212V	gGc	gTc	3	3	AY.5.4	0.00083
N	212	G212G	ggC	ggT	3	3	AY.53	0.000863
N	212	G212V	gGc	gTc	3	3	AY.57	0.001969
N	212	G212S	Ggc	Agc	3	3	AY.61	0.000314
N	212	G212V	gGc	gTc	3	3	AY.98	0.000237
N	212	G212V	gGc	gTc	3	3	AY.98.1	0.000145
N	212	G212D	gGc	gAc	3	3	B.1.1	0.000054
N	212	G212S	Ggc	Agc	3	3	B.1.1.117	0.029126
N	212	G212del	GGC	---	3	3	B.1.1.170	0.003741
N	212	G212C	Ggc	Tgc	3	3	B.1.1.216	0.002671
N	212	G212V	gGc	gTc	3	3	B.1.1.216	0.002671
N	212	G212C	Ggc	Tgc	3	3	B.1.1.220	0.005576
N	212	G212V	gGc	gTc	3	3	B.1.1.25	0.001706
N	212	G212V	gGc	gTc	3	3	B.1.1.28	0.000934
N	212	G212V	gGc	gTc	3	3	B.1.1.317	0.001235
N	212	G212V	gGc	gTc	3	3	B.1.1.343	0.0625
N	212	G212V	gGc	gTc	3	3	B.1.1.448	0.006098
N	212	G212V	gGc	gTc	3	3	B.1.160	0.000094
N	212	G212del	GGC	---	3	3	B.1.177	0.00004
N	212	G212C	Ggc	Tgc	3	3	B.1.177	0.00004
N	212	G212S	Ggc	Agc	3	3	B.1.302	0.04
N	212	G212V	gGc	gTc	3	3	B.1.429	0.000071
N	212	G212S	Ggc	Agc	3	3	B.1.577	0.002062
N	212	G212D	gGc	gAc	3	3	B.1.596	0.000261
N	212	G212G	ggC	ggT	3	3	B.40	0.001093
N	212	G212C	Ggc	Tgc	3	3	P.1.1	0.000953
N	212	G212D	gGc	gAc	3	3	P.1.17	0.000485
N	212	G212V	gGc	gTc	3	3	P.2	0.00056
N	212	G212C	Ggc	Tgc	3	3	R.1	0.00027
N	212	G212V	gGc	gTc	2	2	A	0.000774
N	212	G212C	Ggc	Tgc	2	2	A	0.000774
N	212	G212del	GGC	---	2	2	AE.8	0.000978
N	212	G212del1	Ggc	-gc	2	2	All	0
N	212	G212F	GGc	TTc	2	2	All	0
N	212	G212D	gGc	gAc	2	2	AY.102	0.000053
N	212	G212G	ggC	ggT	2	2	AY.109	0.001479
N	212	G212V	gGc	gTc	2	2	AY.114	0.000462
N	212	G212R	Ggc	Cgc	2	2	AY.117	0.000169
N	212	G212G	ggC	ggT	2	2	AY.117	0.000169
N	212	G212del	GGC	---	2	2	AY.20	0.000078
N	212	G212G	ggC	ggT	1	2	AY.26	0.000028
N	212	G212G	ggC	ggA	1	2	AY.26	0.000028
N	212	G212D	gGc	gAc	2	2	AY.33	0.000134
N	212	G212G	ggC	ggT	2	2	AY.34	0.000194
N	212	G212V	gGc	gTc	2	2	AY.39	0.000049
N	212	G212D	gGc	gAc	2	2	AY.39	0.000049
N	212	G212A	gGc	gCc	2	2	AY.39.1	0.000079
N	212	G212V	gGc	gTc	2	2	AY.4.2	0.000043
N	212	G212G	ggC	ggT	2	2	AY.45	0.000243
N	212	G212G	ggC	ggT	2	2	AY.46	0.000208
N	212	G212del	GGC	---	2	2	AY.46	0.000208
N	212	G212V	gGc	gTc	2	2	AY.46	0.000208
N	212	G212G	ggC	ggT	2	2	AY.47	0.000062
N	212	G212C	Ggc	Tgc	2	2	AY.5	0.000041
N	212	G212del	GGC	---	2	2	AY.50	0.001599
N	212	G212C	Ggc	Tgc	2	2	AY.51	0.001818
N	212	G212S	Ggc	Agc	2	2	AY.59	0.001059
N	212	G212del	GGC	---	2	2	AY.6	0.000082
N	212	G212V	gGc	gTc	2	2	AY.67	0.000929
N	212	G212G	ggC	ggT	2	2	AY.7.1	0.000225
N	212	G212G	ggC	ggT	1	2	AY.75	0.000056
N	212	G212G	ggC	ggA	1	2	AY.75	0.000056
N	212	G212C	Ggc	Tgc	2	2	AY.9	0.000135
N	212	G212V	gGc	gTc	2	2	AY.9.1	0.000167
N	212	G212V	gGc	gTc	2	2	AY.9.2	0.000073
N	212	G212D	gGc	gAc	2	2	AY.9.2	0.000073
N	212	G212G	ggC	ggT	2	2	AY.98	0.000158
N	212	G212D	gGc	gAc	2	2	AY.99.2	0.000184
N	212	G212C	Ggc	Tgc	2	2	B	0.000256
N	212	G212V	gGc	gTc	2	2	B	0.000256
N	212	G212C	Ggc	Tgc	2	2	B.1.1.157	0.001826
N	212	G212C	Ggc	Tgc	2	2	B.1.1.170	0.002494
N	212	G212V	gGc	gTc	2	2	B.1.1.207	0.002364
N	212	G212V	gGc	gTc	2	2	B.1.1.214	0.000111
N	212	G212S	Ggc	Agc	2	2	B.1.1.25	0.001137
N	212	G212G	ggC	ggT	2	2	B.1.1.28	0.000622
N	212	G212V	gGc	gTc	2	2	B.1.1.316	0.00185
N	212	G212G	ggC	ggT	2	2	B.1.1.316	0.00185
N	212	G212G	ggC	ggT	2	2	B.1.1.318	0.000604
N	212	G212del	GGC	---	2	2	B.1.1.370	0.025316
N	212	G212del	GGC	---	2	2	B.1.1.432	0.002532
N	212	G212D	gGc	gAc	2	2	B.1.110.3	0.001437
N	212	G212C	Ggc	Tgc	2	2	B.1.131	0.017544
N	212	G212C	Ggc	Tgc	2	2	B.1.142	0.005797
N	212	G212D	gGc	gAc	2	2	B.1.177	0.000026
N	212	G212F	GGc	TTc	2	2	B.1.177.7	0.00033
N	212	G212A	gGc	gCc	2	2	B.1.2	0.000018
N	212	G212D	gGc	gAc	2	2	B.1.2	0.000018
N	212	G212S	Ggc	Agc	2	2	B.1.2	0.000018
N	212	G212del	GGC	---	2	2	B.1.2	0.000018
N	212	G212C	Ggc	Tgc	2	2	B.1.210	0.004264
N	212	G212V	gGc	gTc	2	2	B.1.22	0.002635
N	212	G212S	Ggc	Agc	2	2	B.1.243	0.000139
N	212	G212C	Ggc	Tgc	2	2	B.1.298	0.004228
N	212	G212V	gGc	gTc	2	2	B.1.351	0.000059
N	212	G212del	GGC	---	2	2	B.1.351	0.000059
N	212	G212V	gGc	gTc	2	2	B.1.36	0.000292
N	212	G212S	Ggc	Agc	2	2	B.1.36.1	0.002281
N	212	G212S	Ggc	Agc	2	2	B.1.36.29	0.001035
N	212	G212S	Ggc	Agc	2	2	B.1.36.36	0.001204
N	212	G212S	Ggc	Agc	2	2	B.1.396	0.001411
N	212	G212V	gGc	gTc	2	2	B.1.398	0.005952
N	212	G212S	Ggc	Agc	2	2	B.1.416.1	0.003125
N	212	G212S	Ggc	Agc	2	2	B.1.427	0.000101
N	212	G212D	gGc	gAc	2	2	B.1.429	0.000047
N	212	G212C	Ggc	Tgc	2	2	B.1.509	0.001732
N	212	G212G	ggC	ggT	2	2	B.1.521	0.00995
N	212	G212C	Ggc	Tgc	2	2	B.1.526	0.000047
N	212	G212G	ggC	ggT	2	2	B.1.564	0.000852
N	212	G212V	gGc	gTc	2	2	B.1.590	0.009091
N	212	G212V	gGc	gTc	2	2	B.1.617.1	0.000258
N	212	G212A	gGc	gCc	2	2	B.1.617.2	0.000008
N	212	G212C	Ggc	Tgc	2	2	B.1.628	0.000705
N	212	G212S	Ggc	Agc	2	2	B.1.634	0.006849
N	212	G212S	Ggc	Agc	2	2	C.37	0.000232
N	212	G212C	Ggc	Tgc	2	2	N.5	0.003534
N	212	G212V	gGc	gTc	2	2	P.1.1	0.000635
N	212	G212del	GGC	---	2	2	P.1.14	0.000096
N	212	G212C	Ggc	Tgc	2	2	P.2	0.000373
N	212	G212S	Ggc	Agc	2	2	P.4	0.007605
N	212	G212C	Ggc	Tgc	2	2	Q.4	0.00091
N	212	G212V	gGc	gTc	2	2	Q.8	0.00033
N	212	G212G	ggC	ggA	1	1		0.055556
N	212	G212V	gGc	gTc	1	1		0.055556
N	212	G212C	Ggc	Tgc	1	1	A.1	0.000282
N	212	G212A	gGc	gCc	1	1	AD.2	0.000219
N	212	G212L	GGC	CTT	1	1	All	0
N	212	G212N	GGc	AAc	1	1	All	0
N	212	G212I	GGc	ATc	1	1	All	0
N	212	G212W	GgC	TgG	1	1	All	0
N	212	G212V	gGc	gTc	1	1	AY.10	0.00053
N	212	G212V	gGc	gTc	1	1	AY.100	0.000046
N	212	G212R	Ggc	Cgc	1	1	AY.103	0.000006
N	212	G212C	Ggc	Tgc	1	1	AY.103	0.000006
N	212	G212V	gGc	gTc	1	1	AY.108	0.001103
N	212	G212del	GGC	---	1	1	AY.110	0.000113
N	212	G212C	Ggc	Tgc	1	1	AY.111	0.000183
N	212	G212G	ggC	ggT	1	1	AY.114	0.000231
N	212	G212del	GGC	---	1	1	AY.116	0.000287
N	212	G212V	gGc	gTc	1	1	AY.117	0.000085
N	212	G212D	gGc	gAc	1	1	AY.117	0.000085
N	212	G212del	GGC	---	1	1	AY.119	0.000035
N	212	G212del	GGC	---	1	1	AY.12	0.000316
N	212	G212D	gGc	gAc	1	1	AY.120	0.000037
N	212	G212del	GGC	---	1	1	AY.120.2	0.001285
N	212	G212D	gGc	gAc	1	1	AY.120.2	0.001285
N	212	G212G	ggC	ggT	1	1	AY.121	0.000135
N	212	G212V	gGc	gTc	1	1	AY.121	0.000135
N	212	G212S	Ggc	Agc	1	1	AY.14	0.000088
N	212	G212D	gGc	gAc	1	1	AY.16.1	0.00047
N	212	G212V	gGc	gTc	1	1	AY.16.1	0.00047
N	212	G212del	GGC	---	1	1	AY.16.1	0.00047
N	212	G212G	ggC	ggT	1	1	AY.2	0.000356
N	212	G212S	Ggc	Agc	1	1	AY.20	0.000039
N	212	G212D	gGc	gAc	1	1	AY.20	0.000039
N	212	G212G	ggC	ggT	1	1	AY.22	0.002092
N	212	G212S	Ggc	Agc	1	1	AY.23	0.00007
N	212	G212del	GGC	---	1	1	AY.23	0.00007
N	212	G212G	ggC	ggT	1	1	AY.24	0.000431
N	212	G212S	Ggc	Agc	1	1	AY.26	0.000028
N	212	G212R	Ggc	Cgc	1	1	AY.27	0.000065
N	212	G212S	Ggc	Agc	1	1	AY.27	0.000065
N	212	G212G	ggC	ggT	1	1	AY.27	0.000065
N	212	G212S	Ggc	Agc	1	1	AY.29	0.000016
N	212	G212del	GGC	---	1	1	AY.29.1	0.000221
N	212	G212L	GGC	CTT	1	1	AY.3	0.00001
N	212	G212del2	gGC	g--	1	1	AY.3	0.00001
N	212	G212D	gGc	gAc	1	1	AY.3	0.00001
N	212	G212V	gGc	gTc	1	1	AY.3.1	0.000085
N	212	G212V	gGc	gTc	1	1	AY.32	0.000532
N	212	G212G	ggC	ggT	1	1	AY.33	0.000067
N	212	G212del	GGC	---	1	1	AY.33	0.000067
N	212	G212D	gGc	gAc	1	1	AY.36	0.000148
N	212	G212del	GGC	---	1	1	AY.36	0.000148
N	212	G212V	gGc	gTc	1	1	AY.38	0.000499
N	212	G212C	Ggc	Tgc	1	1	AY.39	0.000025
N	212	G212del2	GGC	--N	1	1	AY.4	0.000002
N	212	G212D	gGc	gAc	1	1	AY.4.2	0.000022
N	212	G212D	gGc	gAc	1	1	AY.4.2.1	0.000149
N	212	G212D	gGc	gAc	1	1	AY.4.4	0.000409
N	212	G212R	Ggc	Cgc	1	1	AY.4.4	0.000409
N	212	G212V	gGc	gTc	1	1	AY.4.4	0.000409
N	212	G212V	gGc	gTc	1	1	AY.4.5	0.000107
N	212	G212del	GGC	---	1	1	AY.40	0.000964
N	212	G212D	gGc	gAc	1	1	AY.40	0.000964
N	212	G212G	ggC	ggT	1	1	AY.41	0.000294
N	212	G212del	GGC	---	1	1	AY.41	0.000294
N	212	G212D	gGc	gAc	1	1	AY.41	0.000294
N	212	G212del	GGC	---	1	1	AY.42	0.00004
N	212	G212R	Ggc	Cgc	1	1	AY.44	0.000006
N	212	G212S	Ggc	Agc	1	1	AY.46	0.000104
N	212	G212G	ggC	ggT	1	1	AY.46.2	0.000635
N	212	G212C	Ggc	Tgc	1	1	AY.46.4	0.000165
N	212	G212G	ggC	ggT	1	1	AY.46.4	0.000165
N	212	G212D	gGc	gAc	1	1	AY.5	0.000021
N	212	G212S	Ggc	Agc	1	1	AY.5	0.000021
N	212	G212V	gGc	gTc	1	1	AY.5.3	0.000337
N	212	G212V	gGc	gTc	1	1	AY.52	0.000814
N	212	G212S	Ggc	Agc	1	1	AY.53	0.000288
N	212	G212V	gGc	gTc	1	1	AY.53	0.000288
N	212	G212G	ggC	ggT	1	1	AY.54	0.000095
N	212	G212V	gGc	gTc	1	1	AY.55	0.000917
N	212	G212C	Ggc	Tgc	1	1	AY.59	0.00053
N	212	G212G	ggC	ggT	1	1	AY.59	0.00053
N	212	G212S	Ggc	Agc	1	1	AY.6	0.000041
N	212	G212C	Ggc	Tgc	1	1	AY.65	0.000533
N	212	G212C	Ggc	Tgc	1	1	AY.68	0.000274
N	212	G212D	gGc	gAc	1	1	AY.68	0.000274
N	212	G212H	GGc	CAc	1	1	AY.69	0.000187
N	212	G212S	Ggc	Agc	1	1	AY.69	0.000187
N	212	G212D	gGc	gAc	1	1	AY.7.1	0.000113
N	212	G212C	Ggc	Tgc	1	1	AY.71	0.000475
N	212	G212V	gGc	gTc	1	1	AY.71	0.000475
N	212	G212C	Ggc	Tgc	1	1	AY.74	0.000116
N	212	G212del	GGC	---	1	1	AY.75	0.000056
N	212	G212S	Ggc	Agc	1	1	AY.75	0.000056
N	212	G212G	ggC	ggT	1	1	AY.75.1	0.00018
N	212	G212G	ggC	ggT	1	1	AY.77	0.001127
N	212	G212V	gGc	gTc	1	1	AY.8	0.000606
N	212	G212C	Ggc	Tgc	1	1	AY.9.2	0.000037
N	212	G212N	GGc	AAc	1	1	AY.9.2	0.000037
N	212	G212del2	gGC	g--	1	1	AY.92	0.000287
N	212	G212G	ggC	ggT	1	1	AY.93	0.000273
N	212	G212del	GGC	---	1	1	AY.96	0.002075
N	212	G212D	gGc	gAc	1	1	AY.98	0.000079
N	212	G212C	Ggc	Tgc	1	1	AY.98	0.000079
N	212	G212D	gGc	gAc	1	1	AY.98.1	0.000048
N	212	G212G	ggC	ggT	1	1	AY.98.1	0.000048
N	212	G212C	Ggc	Tgc	1	1	AY.98.1	0.000048
N	212	G212R	Ggc	Cgc	1	1	AZ.1	0.000867
N	212	G212del	GGC	---	1	1	B	0.000128
N	212	G212W	GgC	TgG	1	1	B.1	0.000009
N	212	G212H	GGc	CAc	1	1	B.1	0.000009
N	212	G212A	gGc	gCc	1	1	B.1	0.000009
N	212	G212R	Ggc	Cgc	1	1	B.1.1	0.000018
N	212	G212C	Ggc	Tgc	1	1	B.1.1.161	0.003534
N	212	G212del	GGC	---	1	1	B.1.1.189	0.001513
N	212	G212del	GGC	---	1	1	B.1.1.214	0.000055
N	212	G212C	Ggc	Tgc	1	1	B.1.1.214	0.000055
N	212	G212V	gGc	gTc	1	1	B.1.1.217	0.003636
N	212	G212C	Ggc	Tgc	1	1	B.1.1.222	0.000204
N	212	G212del	GGC	---	1	1	B.1.1.222	0.000204
N	212	G212V	gGc	gTc	1	1	B.1.1.229	0.005747
N	212	G212C	Ggc	Tgc	1	1	B.1.1.232	0.001815
N	212	G212G	ggC	ggT	1	1	B.1.1.25	0.000569
N	212	G212del	GGC	---	1	1	B.1.1.270	0.010309
N	212	G212G	ggC	ggT	1	1	B.1.1.275	0.011236
N	212	G212C	Ggc	Tgc	1	1	B.1.1.28	0.000311
N	212	G212del	GGC	---	1	1	B.1.1.28	0.000311
N	212	G212G	ggC	ggT	1	1	B.1.1.286	0.002899
N	212	G212V	gGc	gTc	1	1	B.1.1.288	0.001916
N	212	G212G	ggC	ggT	1	1	B.1.1.289	0.002083
N	212	G212R	Ggc	Cgc	1	1	B.1.1.297	0.002237
N	212	G212del	GGC	---	1	1	B.1.1.303	0.002762
N	212	G212V	gGc	gTc	1	1	B.1.1.306	0.000438
N	212	G212C	Ggc	Tgc	1	1	B.1.1.306	0.000438
N	212	G212G	ggC	ggT	1	1	B.1.1.306	0.000438
N	212	G212del	GGC	---	1	1	B.1.1.307	0.002532
N	212	G212V	gGc	gTc	1	1	B.1.1.307	0.002532
N	212	G212C	Ggc	Tgc	1	1	B.1.1.311	0.000358
N	212	G212V	gGc	gTc	1	1	B.1.1.312	0.001912
N	212	G212del	GGC	---	1	1	B.1.1.33	0.000421
N	212	G212V	gGc	gTc	1	1	B.1.1.33	0.000421
N	212	G212C	Ggc	Tgc	1	1	B.1.1.357	0.125
N	212	G212S	Ggc	Agc	1	1	B.1.1.388	0.045455
N	212	G212G	ggC	ggT	1	1	B.1.1.398	0.003226
N	212	G212C	Ggc	Tgc	1	1	B.1.1.399	0.090909
N	212	G212C	Ggc	Tgc	1	1	B.1.1.407	0.041667
N	212	G212C	Ggc	Tgc	1	1	B.1.1.409	0.002833
N	212	G212V	gGc	gTc	1	1	B.1.1.409	0.002833
N	212	G212C	Ggc	Tgc	1	1	B.1.1.413	0.006897
N	212	G212V	gGc	gTc	1	1	B.1.1.420	0.001006
N	212	G212C	Ggc	Tgc	1	1	B.1.1.420	0.001006
N	212	G212G	ggC	ggT	1	1	B.1.1.447	0.035714
N	212	G212V	gGc	gTc	1	1	B.1.1.47	0.005348
N	212	G212del	GGC	---	1	1	B.1.1.50	0.000679
N	212	G212S	Ggc	Agc	1	1	B.1.1.519	0.00004
N	212	G212D	gGc	gAc	1	1	B.1.1.519	0.00004
N	212	G212G	ggC	ggT	1	1	B.1.1.528	0.004808
N	212	G212V	gGc	gTc	1	1	B.1.1.54	0.003021
N	212	G212R	Ggc	Cgc	1	1	B.1.1.7	0.000001
N	212	G212del1	Ggc	-gc	1	1	B.1.1.7	0.000001
N	212	G212V	gGc	gTc	1	1	B.1.1.70	0.000341
N	212	G212V	gGc	gTc	1	1	B.1.111	0.001175
N	212	G212G	ggC	ggA	1	1	B.1.128	0.000635
N	212	G212del	GGC	---	1	1	B.1.160	0.000031
N	212	G212del1	Ggc	-gc	1	1	B.1.160	0.000031
N	212	G212S	Ggc	Agc	1	1	B.1.160	0.000031
N	212	G212G	ggC	ggA	1	1	B.1.160	0.000031
N	212	G212G	ggC	ggT	1	1	B.1.177.20	0.001517
N	212	G212del	GGC	---	1	1	B.1.177.21	0.000076
N	212	G212S	Ggc	Agc	1	1	B.1.177.44	0.000519
N	212	G212G	ggC	ggT	1	1	B.1.177.45	0.000381
N	212	G212G	ggC	ggT	1	1	B.1.177.55	0.002331
N	212	G212S	Ggc	Agc	1	1	B.1.177.57	0.000281
N	212	G212del	GGC	---	1	1	B.1.177.63	0.002703
N	212	G212del	GGC	---	1	1	B.1.177.65	0.000665
N	212	G212C	Ggc	Tgc	1	1	B.1.177.73	0.000566
N	212	G212V	gGc	gTc	1	1	B.1.177.73	0.000566
N	212	G212G	ggC	ggT	1	1	B.1.177.75	0.001041
N	212	G212S	Ggc	Agc	1	1	B.1.212	0.016667
N	212	G212C	Ggc	Tgc	1	1	B.1.22	0.001318
N	212	G212G	ggC	ggT	1	1	B.1.221	0.000071
N	212	G212D	gGc	gAc	1	1	B.1.221.3	0.000833
N	212	G212C	Ggc	Tgc	1	1	B.1.232	0.000537
N	212	G212S	Ggc	Agc	1	1	B.1.234	0.000132
N	212	G212D	gGc	gAc	1	1	B.1.236	0.002053
N	212	G212C	Ggc	Tgc	1	1	B.1.240	0.000216
N	212	G212V	gGc	gTc	1	1	B.1.258	0.000067
N	212	G212V	gGc	gTc	1	1	B.1.258.17	0.000104
N	212	G212C	Ggc	Tgc	1	1	B.1.258.3	0.001675
N	212	G212C	Ggc	Tgc	1	1	B.1.301	0.005917
N	212	G212C	Ggc	Tgc	1	1	B.1.311	0.000275
N	212	G212A	gGc	gCc	1	1	B.1.319	0.003049
N	212	G212C	Ggc	Tgc	1	1	B.1.324	0.001605
N	212	G212G	ggC	ggT	1	1	B.1.351	0.00003
N	212	G212C	Ggc	Tgc	1	1	B.1.36	0.000146
N	212	G212S	Ggc	Agc	1	1	B.1.36	0.000146
N	212	G212S	Ggc	Agc	1	1	B.1.36.10	0.004785
N	212	G212C	Ggc	Tgc	1	1	B.1.36.18	0.00042
N	212	G212G	ggC	ggT	1	1	B.1.36.29	0.000517
N	212	G212V	gGc	gTc	1	1	B.1.369	0.000285
N	212	G212G	ggC	ggA	1	1	B.1.369	0.000285
N	212	G212V	gGc	gTc	1	1	B.1.375	0.00082
N	212	G212V	gGc	gTc	1	1	B.1.396	0.000706
N	212	G212V	gGc	gTc	1	1	B.1.416	0.001269
N	212	G212V	gGc	gTc	1	1	B.1.428	0.00102
N	212	G212V	gGc	gTc	1	1	B.1.438.1	0.000107
N	212	G212C	Ggc	Tgc	1	1	B.1.456	0.003268
N	212	G212D	gGc	gAc	1	1	B.1.465	0.003802
N	212	G212G	ggC	ggT	1	1	B.1.470	0.001404
N	212	G212C	Ggc	Tgc	1	1	B.1.507	0.011236
N	212	G212G	ggC	ggT	1	1	B.1.517	0.000427
N	212	G212D	gGc	gAc	1	1	B.1.525	0.000113
N	212	G212V	gGc	gTc	1	1	B.1.526	0.000024
N	212	G212S	Ggc	Agc	1	1	B.1.526	0.000024
N	212	G212V	gGc	gTc	1	1	B.1.533	0.009615
N	212	G212V	gGc	gTc	1	1	B.1.538	0.008065
N	212	G212V	gGc	gTc	1	1	B.1.543	0.01
N	212	G212G	ggC	ggT	1	1	B.1.561	0.000397
N	212	G212D	gGc	gAc	1	1	B.1.576	0.000907
N	212	G212A	gGc	gCc	1	1	B.1.580	0.004065
N	212	G212del	GGC	---	1	1	B.1.596	0.000087
N	212	G212A	gGc	gCc	1	1	B.1.596	0.000087
N	212	G212C	Ggc	Tgc	1	1	B.1.610	0.003546
N	212	G212C	Ggc	Tgc	1	1	B.1.612	0.002653
N	212	G212C	Ggc	Tgc	1	1	B.1.617.1	0.000129
N	212	G212G	ggC	ggT	1	1	B.1.628	0.000352
N	212	G212S	Ggc	Agc	1	1	B.1.628	0.000352
N	212	G212S	Ggc	Agc	1	1	B.1.632	0.006711
N	212	G212V	gGc	gTc	1	1	B.1.637	0.000073
N	212	G212V	gGc	gTc	1	1	B.20	0.023256
N	212	G212C	Ggc	Tgc	1	1	B.55	0.00295
N	212	G212C	Ggc	Tgc	1	1	B.6	0.00091
N	212	G212V	gGc	gTc	1	1	B.6.6	0.000889
N	212	G212del	GGC	---	1	1	C.1	0.002392
N	212	G212G	ggC	ggT	1	1	C.11	0.010638
N	212	G212C	Ggc	Tgc	1	1	C.16	0.00106
N	212	G212V	gGc	gTc	1	1	C.16	0.00106
N	212	G212del	GGC	---	1	1	C.26	0.007353
N	212	G212H	GGc	CAc	1	1	C.35	0.000774
N	212	G212del	GGC	---	1	1	C.36	0.000911
N	212	G212del	GGC	---	1	1	C.36.3	0.000567
N	212	G212I	GGc	ATc	1	1	C.36.3.1	0.002717
N	212	G212D	gGc	gAc	1	1	C.37	0.000116
N	212	G212G	ggC	ggT	1	1	C.37.1	0.002618
N	212	G212del	GGC	---	1	1	C.37.1	0.002618
N	212	G212C	Ggc	Tgc	1	1	D.2	0.000075
N	212	G212D	gGc	gAc	1	1	D.2	0.000075
N	212	G212del	GGC	---	1	1	N.3	0.005814
N	212	G212V	gGc	gTc	1	1	N.5	0.001767
N	212	G212G	ggC	ggT	1	1	P.1.1	0.000318
N	212	G212S	Ggc	Agc	1	1	P.1.10	0.000269
N	212	G212C	Ggc	Tgc	1	1	P.1.10	0.000269
N	212	G212C	Ggc	Tgc	1	1	P.1.15	0.000232
N	212	G212G	ggC	ggT	1	1	P.1.15	0.000232
N	212	G212V	gGc	gTc	1	1	P.1.16	0.000374
N	212	G212V	gGc	gTc	1	1	P.1.17	0.000162
N	212	G212del	GGC	---	1	1	P.2	0.000187
N	212	G212G	ggC	ggT	1	1	P.3	0.001595
N	212	G212V	gGc	gTc	1	1	P.3	0.001595
N	212	G212C	Ggc	Tgc	1	1	P.3	0.001595
N	212	G212C	Ggc	Tgc	1	1	Q.1	0.000126
N	212	G212C	Ggc	Tgc	1	1	Q.3	0.000145
N	212	G212V	gGc	gTc	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.