CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 209

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	209	R209I		nonsyn	aGa	aTa	9777	9777	1	28898-28900
N	209	R209G		nonsyn	Aga	Gga	7195	7194	0.999861	28898-28900
N	209	R209G		nonsyn	AgA	GgG	7195	1	0.000138985	28898-28900
N	209	R209K		nonsyn	aGa	aAa	1665	1665	1	28898-28900
N	209	R209del		del	AGA	---	1019	1019	1	28898-28900
N	209	R209R		syn	agA	agG	964	894	0.927386	28898-28900
N	209	R209R		syn	Aga	Cga	964	70	0.0726141	28898-28900
N	209	R209S		nonsyn	agA	agC	801	560	0.699126	28898-28900
N	209	R209S		nonsyn	agA	agT	801	241	0.300874	28898-28900
N	209	R209T		nonsyn	aGa	aCa	732	732	1	28898-28900
N	209	R209del2		del	aGA	a--	33	23	0.69697	28898-28900
N	209	R209del2		del	AGa	--a	33	5	0.151515	28898-28900
N	209	R209del2		del	AGA	--N	33	5	0.151515	28898-28900
N	209	R209X		nonsyn	Aga	Tga	17	16	0.941176	28898-28900
N	209	R209X		nonsyn	AGa	TAa	17	1	0.0588235	28898-28900
N	209	R209del1		del	aGa	a-a	14	5	0.357143	28898-28900
N	209	R209del1		del	AGa	-Ca	14	4	0.285714	28898-28900
N	209	R209del1		del	agA	ag-	14	3	0.214286	28898-28900
N	209	R209del1		del	aGA	a-N	14	1	0.0714286	28898-28900
N	209	R209del1		del	Aga	-ga	14	1	0.0714286	28898-28900
N	209	R209E		nonsyn	AGa	GAa	6	5	0.833333	28898-28900
N	209	R209E		nonsyn	AGA	GAG	6	1	0.166667	28898-28900
N	209	R209P		nonsyn	AGa	CCa	1	1	1	28898-28900
N	209	R209N		nonsyn	aGA	aAT	1	1	1	28898-28900

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	209	R209I	aGa	aTa	9777	9777	All	0.00187
N	209	R209G	Aga	Gga	7194	7195	All	0.001376
N	209	R209G	AgA	GgG	1	7195	All	0
N	209	R209I	aGa	aTa	4452	4452	AY.70	0.928274
N	209	R209G	Aga	Gga	3124	3124	B.1.1.318	0.942667
N	209	R209K	aGa	aAa	1665	1665	All	0.000318
N	209	R209G	Aga	Gga	1186	1187	AZ.2	0.973727
N	209	R209G	AgA	GgG	1	1187	AZ.2	0.000821
N	209	R209G	Aga	Gga	1153	1153	AZ.1	1
N	209	R209del	AGA	---	1019	1019	All	0.000195
N	209	R209R	agA	agG	894	964	All	0.000171
N	209	R209R	Aga	Cga	70	964	All	0.000013
N	209	R209I	aGa	aTa	813	813	B.1	0.007447
N	209	R209S	agA	agC	560	801	All	0.000107
N	209	R209S	agA	agT	241	801	All	0.000046
N	209	R209T	aGa	aCa	732	732	All	0.00014
N	209	R209R	agA	agG	681	681	P.1.7	0.217433
N	209	R209G	Aga	Gga	633	633	AZ.3	0.962006
N	209	R209I	aGa	aTa	478	478	B.1.1.222	0.097511
N	209	R209I	aGa	aTa	469	469	B.1.516	0.917808
N	209	R209del	AGA	---	419	419	B.1.1.7	0.000375
N	209	R209K	aGa	aAa	361	361	AY.29	0.005694
N	209	R209I	aGa	aTa	326	326	B.1.471	0.89071
N	209	R209K	aGa	aAa	288	288	B.1	0.002638
N	209	R209S	agA	agC	147	285	B.1.1.7	0.000132
N	209	R209S	agA	agT	138	285	B.1.1.7	0.000124
N	209	R209G	Aga	Gga	279	279	AZ.4	0.936242
N	209	R209G	Aga	Gga	274	274	AZ.5	0.961404
N	209	R209K	aGa	aAa	260	260	B.1.425	0.778443
N	209	R209I	aGa	aTa	246	246	B.1.258	0.016371
N	209	R209I	aGa	aTa	217	217	B.1.1.354	0.951754
N	209	R209S	agA	agC	155	160	AY.4	0.000241
N	209	R209S	agA	agT	5	160	AY.4	0.000008
N	209	R209I	aGa	aTa	155	155	B.1.617.2	0.000584
N	209	R209I	aGa	aTa	147	147	AY.4	0.000229
N	209	R209K	aGa	aAa	141	141	P.1	0.002221
N	209	R209I	aGa	aTa	138	138	B.1.306	0.788571
N	209	R209I	aGa	aTa	138	138	B.1.9.4	0.846626
N	209	R209I	aGa	aTa	130	130	B.1.1.7	0.000116
N	209	R209T	aGa	aCa	126	126	B.1.2	0.001109
N	209	R209G	Aga	Gga	121	121	AZ.2.1	0.98374
N	209	R209I	aGa	aTa	120	120	AY.43	0.000532
N	209	R209G	Aga	Gga	118	118	AZ.6	0.991597
N	209	R209I	aGa	aTa	115	115	B.1.637	0.008403
N	209	R209T	aGa	aCa	111	111	AY.43	0.000492
N	209	R209G	Aga	Gga	108	108	B.1.1.7	0.000097
N	209	R209I	aGa	aTa	105	105	B.1.336	0.256098
N	209	R209K	aGa	aAa	104	104	AY.4	0.000162
N	209	R209K	aGa	aAa	96	96	B.1.2	0.000845
N	209	R209I	aGa	aTa	94	94	B.1.390	1
N	209	R209del	AGA	---	75	75	AY.103	0.000466
N	209	R209T	aGa	aCa	68	68	B.1.1.7	0.000061
N	209	R209I	aGa	aTa	68	68	B.1.2	0.000599
N	209	R209I	aGa	aTa	63	63	AY.103	0.000391
N	209	R209I	aGa	aTa	63	63	B.1.1	0.001143
N	209	R209I	aGa	aTa	62	62	B.1.429	0.001459
N	209	R209S	agA	agC	61	61	B.1.36.23	1
N	209	R209T	aGa	aCa	57	57	B.1	0.000522
N	209	R209I	aGa	aTa	56	56	AY.5	0.001156
N	209	R209T	aGa	aCa	54	54	AY.4	0.000084
N	209	R209S	agA	agC	52	52	D.2	0.003902
N	209	R209K	aGa	aAa	51	51	B.1.1.519	0.002025
N	209	R209I	aGa	aTa	50	50	B.1.240	0.010778
N	209	R209S	agA	agT	41	43	AY.4.2	0.000889
N	209	R209S	agA	agC	2	43	AY.4.2	0.000043
N	209	R209del	AGA	---	42	42	AY.4	0.000065
N	209	R209del	AGA	---	42	42	AY.70	0.008757
N	209	R209R	Aga	Cga	31	40	AY.4	0.000048
N	209	R209R	agA	agG	9	40	AY.4	0.000014
N	209	R209I	aGa	aTa	40	40	B.1.1.370	0.506329
N	209	R209I	aGa	aTa	40	40	B.1.621	0.003541
N	209	R209T	aGa	aCa	39	39	AY.103	0.000242
N	209	R209del	AGA	---	38	38	B.1.1	0.000689
N	209	R209del	AGA	---	37	37	AY.118	0.002318
N	209	R209G	Aga	Gga	37	37	B.1.1	0.000671
N	209	R209I	aGa	aTa	36	36	AY.41	0.010582
N	209	R209I	aGa	aTa	36	36	AY.44	0.000219
N	209	R209K	aGa	aAa	35	35	B.1.1	0.000635
N	209	R209R	agA	agG	25	35	B.1.1.7	0.000022
N	209	R209R	Aga	Cga	10	35	B.1.1.7	0.000009
N	209	R209I	aGa	aTa	35	35	B.1.551	0.045161
N	209	R209del	AGA	---	34	34	B.1.1.93	0.871795
N	209	R209I	aGa	aTa	34	34	B.1.478	0.4
N	209	R209T	aGa	aCa	34	34	B.1.526	0.000799
N	209	R209del2	aGA	a--	23	33	All	0.000004
N	209	R209del2	AGa	--a	5	33	All	0.000001
N	209	R209del2	AGA	--N	5	33	All	0.000001
N	209	R209del	AGA	---	31	31	B.1.1.370	0.392405
N	209	R209I	aGa	aTa	30	30	B.1.526	0.000705
N	209	R209R	agA	agG	27	29	B.1.617.2	0.000102
N	209	R209R	Aga	Cga	2	29	B.1.617.2	0.000008
N	209	R209I	aGa	aTa	28	28	AY.3	0.000278
N	209	R209I	aGa	aTa	27	27	AY.25	0.000162
N	209	R209I	aGa	aTa	27	27	B.1.258.17	0.002807
N	209	R209I	aGa	aTa	26	26	B.1.192	0.240741
N	209	R209S	agA	agC	20	25	AY.25	0.00012
N	209	R209S	agA	agT	5	25	AY.25	0.00003
N	209	R209I	aGa	aTa	25	25	AY.47	0.000778
N	209	R209I	aGa	aTa	25	25	B.1.177	0.000329
N	209	R209I	aGa	aTa	25	25	B.1.177.30	0.062814
N	209	R209I	aGa	aTa	25	25	B.1.595	0.006524
N	209	R209I	aGa	aTa	24	24	AY.9	0.001622
N	209	R209I	aGa	aTa	24	24	B.1.1.269	0.032476
N	209	R209K	aGa	aAa	24	24	B.1.221.1	0.069767
N	209	R209K	aGa	aAa	22	22	B.1.221	0.001563
N	209	R209I	aGa	aTa	22	22	B.1.558	0.100457
N	209	R209K	aGa	aAa	21	21	B.1.351	0.000624
N	209	R209T	aGa	aCa	21	21	B.1.617.2	0.000079
N	209	R209del	AGA	---	20	20	AY.25	0.00012
N	209	R209del	AGA	---	20	20	B.1.177	0.000263
N	209	R209I	aGa	aTa	19	19	B	0.002428
N	209	R209K	aGa	aAa	19	19	B.1.177.86	0.003486
N	209	R209del	AGA	---	18	18	AY.43	0.00008
N	209	R209I	aGa	aTa	18	18	AY.9.1	0.001507
N	209	R209G	Aga	Gga	18	18	B.1.1.222	0.003672
N	209	R209G	Aga	Gga	18	18	B.1.1.437	0.1875
N	209	R209I	aGa	aTa	18	18	B.1.427	0.000909
N	209	R209X	Aga	Tga	16	17	All	0.000003
N	209	R209X	AGa	TAa	1	17	All	0
N	209	R209I	aGa	aTa	17	17	AY.23	0.001186
N	209	R209del	AGA	---	17	17	AY.3	0.000169
N	209	R209del	AGA	---	17	17	AY.44	0.000103
N	209	R209I	aGa	aTa	16	16	AY.46.5	0.003175
N	209	R209R	agA	agG	16	16	B.1.2	0.000141
N	209	R209S	agA	agC	14	15	AY.99.2	0.00129
N	209	R209S	agA	agT	1	15	AY.99.2	0.000092
N	209	R209R	agA	agG	15	15	B.1.1.317	0.006175
N	209	R209I	aGa	aTa	15	15	B.1.428.3	0.192308
N	209	R209del1	aGa	a-a	5	14	All	0.000001
N	209	R209del1	AGa	-Ca	4	14	All	0.000001
N	209	R209del1	agA	ag-	3	14	All	0.000001
N	209	R209del1	Aga	-ga	1	14	All	0
N	209	R209del1	aGA	a-N	1	14	All	0
N	209	R209K	aGa	aAa	14	14	AY.113	0.001993
N	209	R209S	agA	agT	14	14	AY.120	0.000521
N	209	R209I	aGa	aTa	14	14	AY.20	0.000544
N	209	R209I	aGa	aTa	14	14	AY.26	0.000396
N	209	R209S	agA	agC	10	14	AY.43	0.000044
N	209	R209S	agA	agT	4	14	AY.43	0.000018
N	209	R209del	AGA	---	14	14	B.1	0.000128
N	209	R209T	aGa	aCa	14	14	B.1.1.306	0.006138
N	209	R209I	aGa	aTa	14	14	B.1.1.519	0.000556
N	209	R209I	aGa	aTa	14	14	B.1.177.60	0.003058
N	209	R209del	AGA	---	14	14	B.1.617.2	0.000053
N	209	R209I	aGa	aTa	13	13	AY.102	0.000345
N	209	R209T	aGa	aCa	13	13	AY.25	0.000078
N	209	R209I	aGa	aTa	13	13	AY.61	0.001362
N	209	R209del	AGA	---	13	13	AY.99.2	0.001198
N	209	R209I	aGa	aTa	13	13	B.1.1.311	0.004656
N	209	R209K	aGa	aAa	13	13	B.1.1.7	0.000012
N	209	R209I	aGa	aTa	13	13	B.1.160	0.000405
N	209	R209I	aGa	aTa	13	13	B.1.189	0.055794
N	209	R209K	aGa	aAa	13	13	B.1.617.2	0.000049
N	209	R209S	agA	agC	10	13	B.1.617.2	0.000038
N	209	R209S	agA	agT	3	13	B.1.617.2	0.000011
N	209	R209S	agA	agC	10	12	AY.103	0.000062
N	209	R209S	agA	agT	2	12	AY.103	0.000012
N	209	R209R	Aga	Cga	10	12	AY.3	0.000099
N	209	R209R	agA	agG	2	12	AY.3	0.00002
N	209	R209I	aGa	aTa	12	12	AY.39	0.000297
N	209	R209I	aGa	aTa	12	12	AY.75	0.000672
N	209	R209del	AGA	---	12	12	B.1.1.519	0.000477
N	209	R209I	aGa	aTa	12	12	B.1.560	0.055556
N	209	R209I	aGa	aTa	12	12	B.1.596	0.001046
N	209	R209R	agA	agG	10	11	AY.33	0.000668
N	209	R209R	Aga	Cga	1	11	AY.33	0.000067
N	209	R209T	aGa	aCa	11	11	AY.44	0.000067
N	209	R209S	agA	agC	10	11	B.1.1	0.000181
N	209	R209S	agA	agT	1	11	B.1.1	0.000018
N	209	R209I	aGa	aTa	11	11	B.1.234	0.001451
N	209	R209K	aGa	aAa	11	11	B.1.503	0.027363
N	209	R209I	aGa	aTa	10	10	A	0.00387
N	209	R209T	aGa	aCa	10	10	AY.113	0.001424
N	209	R209del2	aGA	a--	7	10	AY.4	0.000011
N	209	R209del2	AGA	--N	3	10	AY.4	0.000005
N	209	R209S	agA	agC	10	10	B.1	0.000092
N	209	R209G	Aga	Gga	9	9	AT.1	0.046154
N	209	R209I	aGa	aTa	9	9	B.1.221	0.000639
N	209	R209R	agA	agG	9	9	B.1.258	0.000599
N	209	R209R	agA	agG	9	9	B.1.351	0.000268
N	209	R209I	aGa	aTa	9	9	B.1.509	0.007792
N	209	R209G	Aga	Gga	9	9	P.1	0.000142
N	209	R209I	aGa	aTa	8	8	AY.119	0.000282
N	209	R209del	AGA	---	8	8	AY.21	0.01518
N	209	R209T	aGa	aCa	8	8	AY.4.5	0.00086
N	209	R209I	aGa	aTa	8	8	AY.46	0.000833
N	209	R209I	aGa	aTa	8	8	AY.86	0.006639
N	209	R209R	agA	agG	8	8	B.1.1.28	0.00249
N	209	R209K	aGa	aAa	8	8	B.1.177.42	0.007156
N	209	R209I	aGa	aTa	8	8	B.1.210	0.017058
N	209	R209I	aGa	aTa	8	8	B.1.241	0.006494
N	209	R209del	AGA	---	8	8	B.1.336	0.019512
N	209	R209I	aGa	aTa	8	8	B.1.36.1	0.009122
N	209	R209R	agA	agG	7	7	AY.103	0.000043
N	209	R209I	aGa	aTa	7	7	AY.107	0.003262
N	209	R209T	aGa	aCa	7	7	AY.3	0.00007
N	209	R209G	Aga	Gga	7	7	AY.4	0.000011
N	209	R209I	aGa	aTa	7	7	B.1.111	0.008226
N	209	R209K	aGa	aAa	7	7	B.1.177	0.000092
N	209	R209del	AGA	---	7	7	B.1.177.21	0.000535
N	209	R209K	aGa	aAa	7	7	B.1.243	0.000487
N	209	R209I	aGa	aTa	7	7	B.1.36.17	0.003458
N	209	R209I	aGa	aTa	7	7	B.1.606	0.042169
N	209	R209R	agA	agG	7	7	P.1	0.00011
N	209	R209T	aGa	aCa	7	7	P.1.4	0.006836
N	209	R209E	AGa	GAa	5	6	All	0.000001
N	209	R209E	AGA	GAG	1	6	All	0
N	209	R209del	AGA	---	6	6	AY.100	0.000276
N	209	R209G	Aga	Gga	6	6	AY.44	0.000037
N	209	R209S	agA	agC	6	6	AY.44	0.000037
N	209	R209I	aGa	aTa	6	6	AY.7.2	0.003356
N	209	R209R	agA	agG	6	6	AY.73	0.003992
N	209	R209T	aGa	aCa	6	6	AY.9	0.000406
N	209	R209I	aGa	aTa	6	6	AY.98.1	0.000291
N	209	R209G	Aga	Gga	6	6	B.1	0.000055
N	209	R209T	aGa	aCa	6	6	B.1.1	0.000109
N	209	R209I	aGa	aTa	6	6	B.1.1.170	0.007481
N	209	R209T	aGa	aCa	6	6	B.1.1.519	0.000238
N	209	R209G	Aga	Gga	6	6	B.1.1.519	0.000238
N	209	R209I	aGa	aTa	6	6	B.1.409	0.004687
N	209	R209T	aGa	aCa	6	6	B.1.558	0.027397
N	209	R209T	aGa	aCa	6	6	B.1.595	0.001566
N	209	R209I	aGa	aTa	6	6	B.1.617.1	0.000774
N	209	R209G	Aga	Gga	6	6	B.1.617.2	0.000023
N	209	R209del	AGA	---	6	6	D.2	0.00045
N	209	R209K	aGa	aAa	6	6	P.1.14	0.000287
N	209	R209del	AGA	---	6	6	Q.8	0.000989
N	209	R209I	aGa	aTa	5	5	A.2.5	0.002495
N	209	R209I	aGa	aTa	5	5	AY.100	0.00023
N	209	R209R	agA	agG	5	5	AY.100	0.00023
N	209	R209I	aGa	aTa	5	5	AY.116	0.001434
N	209	R209del	AGA	---	5	5	AY.27	0.000324
N	209	R209G	Aga	Gga	5	5	AY.3	0.00005
N	209	R209del2	AGa	--a	3	5	AY.3	0.00003
N	209	R209del2	aGA	a--	2	5	AY.3	0.00002
N	209	R209K	aGa	aAa	5	5	AY.33	0.000334
N	209	R209I	aGa	aTa	5	5	AY.33	0.000334
N	209	R209R	agA	agG	4	5	AY.42	0.000161
N	209	R209R	Aga	Cga	1	5	AY.42	0.00004
N	209	R209I	aGa	aTa	5	5	AY.46.6	0.000361
N	209	R209I	aGa	aTa	5	5	AY.71	0.002375
N	209	R209K	aGa	aAa	5	5	AY.79	0.006053
N	209	R209R	agA	agG	5	5	B.1	0.000046
N	209	R209K	aGa	aAa	5	5	B.1.160	0.000156
N	209	R209I	aGa	aTa	5	5	B.1.177.72	0.016949
N	209	R209T	aGa	aCa	5	5	B.1.480	0.012438
N	209	R209I	aGa	aTa	5	5	B.1.545	0.072464
N	209	R209S	agA	agT	5	5	B.1.580	0.020325
N	209	R209I	aGa	aTa	5	5	B.1.609	0.002397
N	209	R209I	aGa	aTa	5	5	B.29	0.017544
N	209	R209I	aGa	aTa	5	5	B.40	0.001821
N	209	R209T	aGa	aCa	5	5	P.1	0.000079
N	209	R209R	agA	agG	4	4	A.2.5	0.001996
N	209	R209del	AGA	---	4	4	AY.101	0.001962
N	209	R209del	AGA	---	4	4	AY.102	0.000106
N	209	R209T	aGa	aCa	4	4	AY.102	0.000106
N	209	R209I	aGa	aTa	4	4	AY.120	0.000149
N	209	R209I	aGa	aTa	4	4	AY.121	0.000541
N	209	R209I	aGa	aTa	4	4	AY.13	0.000644
N	209	R209T	aGa	aCa	4	4	AY.2	0.001425
N	209	R209K	aGa	aAa	4	4	AY.29.1	0.000882
N	209	R209S	agA	agC	4	4	AY.3	0.00004
N	209	R209T	aGa	aCa	4	4	AY.33	0.000267
N	209	R209G	Aga	Gga	4	4	AY.43	0.000018
N	209	R209K	aGa	aAa	4	4	AY.44	0.000024
N	209	R209I	aGa	aTa	4	4	AY.45	0.000487
N	209	R209T	aGa	aCa	4	4	AY.46.6	0.000289
N	209	R209S	agA	agC	4	4	AY.5	0.000083
N	209	R209I	aGa	aTa	4	4	AY.50	0.003197
N	209	R209K	aGa	aAa	4	4	B.1.1.214	0.000222
N	209	R209del2	aGA	a--	4	4	B.1.1.519	0.000159
N	209	R209del1	AGa	-Ca	4	4	B.1.1.7	0.000004
N	209	R209I	aGa	aTa	4	4	B.1.126	0.005102
N	209	R209S	agA	agC	4	4	B.1.177	0.000053
N	209	R209K	aGa	aAa	4	4	B.1.177.16	0.002658
N	209	R209K	aGa	aAa	4	4	B.1.199	0.016529
N	209	R209del	AGA	---	4	4	B.1.2	0.000035
N	209	R209S	agA	agC	3	4	B.1.2	0.000026
N	209	R209S	agA	agT	1	4	B.1.2	0.000009
N	209	R209T	aGa	aCa	4	4	B.1.243	0.000278
N	209	R209I	aGa	aTa	4	4	B.1.324	0.006421
N	209	R209I	aGa	aTa	4	4	B.1.326	0.030303
N	209	R209I	aGa	aTa	4	4	B.1.351.3	0.003506
N	209	R209T	aGa	aCa	4	4	B.1.36	0.000584
N	209	R209I	aGa	aTa	4	4	B.1.36.29	0.002069
N	209	R209I	aGa	aTa	4	4	B.1.425	0.011976
N	209	R209I	aGa	aTa	4	4	B.1.459	0.016327
N	209	R209R	agA	agG	4	4	B.1.497	0.001259
N	209	R209S	agA	agT	4	4	B.1.503	0.00995
N	209	R209K	aGa	aAa	4	4	B.1.596	0.000349
N	209	R209I	aGa	aTa	4	4	B.1.84	0.083333
N	209	R209I	aGa	aTa	4	4	B.1.9	0.024691
N	209	R209I	aGa	aTa	4	4	B.1.9.5	0.022727
N	209	R209I	aGa	aTa	4	4	P.1	0.000063
N	209	R209I	aGa	aTa	3	3	A.28	0.007937
N	209	R209S	agA	agC	3	3	AY.117	0.000254
N	209	R209S	agA	agC	3	3	AY.118	0.000188
N	209	R209del	AGA	---	3	3	AY.120	0.000112
N	209	R209del	AGA	---	3	3	AY.20	0.000117
N	209	R209del	AGA	---	3	3	AY.23	0.000209
N	209	R209del	AGA	---	3	3	AY.26	0.000085
N	209	R209G	Aga	Gga	3	3	AY.26	0.000085
N	209	R209I	aGa	aTa	3	3	AY.29	0.000047
N	209	R209del	AGA	---	3	3	AY.34	0.000291
N	209	R209S	agA	agC	3	3	AY.39	0.000074
N	209	R209del	AGA	---	3	3	AY.39	0.000074
N	209	R209X	Aga	Tga	3	3	AY.4	0.000005
N	209	R209T	aGa	aCa	3	3	AY.4.2	0.000065
N	209	R209T	aGa	aCa	3	3	AY.4.2.1	0.000447
N	209	R209I	aGa	aTa	3	3	AY.4.5	0.000322
N	209	R209I	aGa	aTa	3	3	AY.42	0.000121
N	209	R209del2	aGA	a--	2	3	AY.43	0.000009
N	209	R209del2	AGA	--N	1	3	AY.43	0.000004
N	209	R209I	aGa	aTa	3	3	AY.46.1	0.00308
N	209	R209R	agA	agG	2	3	AY.47	0.000062
N	209	R209R	Aga	Cga	1	3	AY.47	0.000031
N	209	R209T	aGa	aCa	3	3	AY.5	0.000062
N	209	R209K	aGa	aAa	3	3	AY.6	0.000123
N	209	R209R	agA	agG	3	3	AY.9.2	0.00011
N	209	R209I	aGa	aTa	3	3	AY.9.2	0.00011
N	209	R209X	Aga	Tga	2	3	B.1	0.000018
N	209	R209del1	agA	ag-	1	3	B.1	0.000009
N	209	R209del1	aGa	a-a	1	3	B.1	0.000009
N	209	R209X	AGa	TAa	1	3	B.1	0.000009
N	209	R209del1	aGA	a-N	1	3	B.1	0.000009
N	209	R209K	aGa	aAa	3	3	B.1.1.12	0.022388
N	209	R209del	AGA	---	3	3	B.1.1.170	0.003741
N	209	R209I	aGa	aTa	3	3	B.1.1.220	0.005576
N	209	R209K	aGa	aAa	3	3	B.1.1.222	0.000612
N	209	R209I	aGa	aTa	3	3	B.1.1.277	0.002276
N	209	R209E	AGa	GAa	3	3	B.1.1.318	0.000905
N	209	R209K	aGa	aAa	3	3	B.1.1.387	0.176471
N	209	R209R	agA	agG	3	3	B.1.1.4	0.008929
N	209	R209G	Aga	Gga	3	3	B.1.1.70	0.001023
N	209	R209R	agA	agG	3	3	B.1.177	0.00004
N	209	R209T	aGa	aCa	3	3	B.1.177	0.00004
N	209	R209K	aGa	aAa	3	3	B.1.177.56	0.002003
N	209	R209R	agA	agG	3	3	B.1.177.82	0.001432
N	209	R209G	Aga	Gga	3	3	B.1.2	0.000026
N	209	R209I	aGa	aTa	3	3	B.1.3	0.007853
N	209	R209I	aGa	aTa	3	3	B.1.351	0.000089
N	209	R209K	aGa	aAa	3	3	B.1.36.8	0.003
N	209	R209I	aGa	aTa	3	3	B.1.396	0.002117
N	209	R209I	aGa	aTa	3	3	B.1.398	0.008929
N	209	R209T	aGa	aCa	3	3	B.1.429	0.000071
N	209	R209I	aGa	aTa	3	3	B.1.468	0.017143
N	209	R209I	aGa	aTa	3	3	B.1.600	0.017544
N	209	R209I	aGa	aTa	3	3	B.1.635	0.052632
N	209	R209del	AGA	---	3	3	B.40	0.001093
N	209	R209K	aGa	aAa	3	3	B.40	0.001093
N	209	R209T	aGa	aCa	3	3	B.6.6	0.002667
N	209	R209S	agA	agT	3	3	C.37	0.000348
N	209	R209K	aGa	aAa	3	3	P.1.1	0.000953
N	209	R209del	AGA	---	3	3	Q.1	0.000379
N	209	R209I	aGa	aTa	2	2	A.1	0.000564
N	209	R209T	aGa	aCa	2	2	A.2.5	0.000998
N	209	R209I	aGa	aTa	2	2	A.2.5.1	0.009615
N	209	R209I	aGa	aTa	2	2	A.27	0.003311
N	209	R209S	agA	agC	2	2	AE.8	0.000978
N	209	R209T	aGa	aCa	2	2	AY.100	0.000092
N	209	R209I	aGa	aTa	2	2	AY.106	0.00067
N	209	R209I	aGa	aTa	2	2	AY.114	0.000462
N	209	R209G	Aga	Gga	2	2	AY.14	0.000176
N	209	R209I	aGa	aTa	2	2	AY.16.1	0.00094
N	209	R209R	agA	agG	2	2	AY.25	0.000012
N	209	R209G	Aga	Gga	2	2	AY.25	0.000012
N	209	R209R	Aga	Cga	2	2	AY.29	0.000032
N	209	R209G	Aga	Gga	2	2	AY.29	0.000032
N	209	R209del1	agA	ag-	1	2	AY.3	0.00001
N	209	R209del1	Aga	-ga	1	2	AY.3	0.00001
N	209	R209del	AGA	---	2	2	AY.33	0.000134
N	209	R209I	aGa	aTa	2	2	AY.34	0.000194
N	209	R209T	aGa	aCa	2	2	AY.34	0.000194
N	209	R209K	aGa	aAa	2	2	AY.4.2	0.000043
N	209	R209T	aGa	aCa	2	2	AY.4.4	0.000818
N	209	R209del	AGA	---	2	2	AY.4.5	0.000215
N	209	R209del	AGA	---	2	2	AY.40	0.001929
N	209	R209K	aGa	aAa	2	2	AY.43	0.000009
N	209	R209R	agA	agG	2	2	AY.43	0.000009
N	209	R209K	aGa	aAa	2	2	AY.45	0.000243
N	209	R209T	aGa	aCa	2	2	AY.46.4	0.000329
N	209	R209del	AGA	---	2	2	AY.5	0.000041
N	209	R209G	Aga	Gga	2	2	AY.5	0.000041
N	209	R209K	aGa	aAa	2	2	AY.5	0.000041
N	209	R209R	Aga	Cga	1	2	AY.5	0.000021
N	209	R209R	agA	agG	1	2	AY.5	0.000021
N	209	R209del	AGA	---	2	2	AY.50	0.001599
N	209	R209I	aGa	aTa	2	2	AY.51	0.001818
N	209	R209I	aGa	aTa	2	2	AY.54	0.000191
N	209	R209I	aGa	aTa	2	2	AY.59	0.001059
N	209	R209I	aGa	aTa	2	2	AY.67	0.000929
N	209	R209I	aGa	aTa	2	2	AY.75.1	0.000361
N	209	R209I	aGa	aTa	2	2	AY.84	0.000875
N	209	R209G	Aga	Gga	2	2	AY.88	0.001768
N	209	R209R	Aga	Cga	2	2	AY.9	0.000135
N	209	R209K	aGa	aAa	2	2	AY.9.2	0.000073
N	209	R209G	Aga	Gga	2	2	AY.92	0.000575
N	209	R209T	aGa	aCa	2	2	AY.98.1	0.000097
N	209	R209S	agA	agT	2	2	AY.98.1	0.000097
N	209	R209E	AGa	GAa	2	2	AZ.2	0.001642
N	209	R209X	Aga	Tga	2	2	AZ.2	0.001642
N	209	R209R	agA	agG	2	2	B.1.1	0.000036
N	209	R209G	Aga	Gga	2	2	B.1.1.1	0.000653
N	209	R209G	Aga	Gga	2	2	B.1.1.142	0.035088
N	209	R209I	aGa	aTa	2	2	B.1.1.171	0.007353
N	209	R209I	aGa	aTa	2	2	B.1.1.189	0.003026
N	209	R209G	Aga	Gga	2	2	B.1.1.25	0.001137
N	209	R209del	AGA	---	2	2	B.1.1.291	0.001485
N	209	R209I	aGa	aTa	2	2	B.1.1.294	0.002532
N	209	R209I	aGa	aTa	2	2	B.1.1.301	0.002358
N	209	R209del	AGA	---	2	2	B.1.1.307	0.005063
N	209	R209K	aGa	aAa	2	2	B.1.1.312	0.003824
N	209	R209T	aGa	aCa	2	2	B.1.1.33	0.000842
N	209	R209R	agA	agG	2	2	B.1.1.366	0.031746
N	209	R209I	aGa	aTa	2	2	B.1.1.37	0.000386
N	209	R209G	Aga	Gga	2	2	B.1.1.416	0.00181
N	209	R209S	agA	agC	2	2	B.1.1.432	0.002532
N	209	R209I	aGa	aTa	2	2	B.1.1.514	0.076923
N	209	R209T	aGa	aCa	2	2	B.1.1.63	0.000772
N	209	R209I	aGa	aTa	2	2	B.1.128	0.001271
N	209	R209I	aGa	aTa	2	2	B.1.140	0.037736
N	209	R209K	aGa	aAa	2	2	B.1.177.44	0.001038
N	209	R209I	aGa	aTa	2	2	B.1.213	0.029851
N	209	R209I	aGa	aTa	2	2	B.1.243	0.000139
N	209	R209R	agA	agG	2	2	B.1.243	0.000139
N	209	R209del1	aGa	a-a	2	2	B.1.247	0.029851
N	209	R209T	aGa	aCa	2	2	B.1.258	0.000133
N	209	R209K	aGa	aAa	2	2	B.1.258.10	0.022727
N	209	R209K	aGa	aAa	2	2	B.1.258.3	0.00335
N	209	R209I	aGa	aTa	2	2	B.1.279	0.001027
N	209	R209I	aGa	aTa	2	2	B.1.332	0.006993
N	209	R209I	aGa	aTa	2	2	B.1.334	0.036364
N	209	R209G	Aga	Gga	2	2	B.1.336	0.004878
N	209	R209del	AGA	---	2	2	B.1.351	0.000059
N	209	R209I	aGa	aTa	2	2	B.1.351.2	0.000605
N	209	R209del	AGA	---	2	2	B.1.351.2	0.000605
N	209	R209K	aGa	aAa	2	2	B.1.36.29	0.001035
N	209	R209I	aGa	aTa	2	2	B.1.362	0.003082
N	209	R209I	aGa	aTa	2	2	B.1.380	0.013245
N	209	R209K	aGa	aAa	2	2	B.1.409	0.001563
N	209	R209T	aGa	aCa	2	2	B.1.416	0.002538
N	209	R209K	aGa	aAa	2	2	B.1.422	0.001625
N	209	R209I	aGa	aTa	2	2	B.1.466.2	0.000782
N	209	R209K	aGa	aAa	2	2	B.1.468	0.011429
N	209	R209K	aGa	aAa	2	2	B.1.470	0.002809
N	209	R209del	AGA	---	2	2	B.1.517	0.000854
N	209	R209T	aGa	aCa	2	2	B.1.517.1	0.010526
N	209	R209T	aGa	aCa	2	2	B.1.525	0.000226
N	209	R209I	aGa	aTa	2	2	B.1.561	0.000794
N	209	R209S	agA	agC	2	2	B.1.564	0.000852
N	209	R209I	aGa	aTa	2	2	B.1.564.1	0.003155
N	209	R209K	aGa	aAa	2	2	B.1.582	0.000981
N	209	R209S	agA	agT	2	2	B.1.582	0.000981
N	209	R209T	aGa	aCa	2	2	B.1.621.1	0.001012
N	209	R209I	aGa	aTa	2	2	B.28	0.006557
N	209	R209K	aGa	aAa	2	2	D.2	0.00015
N	209	R209G	Aga	Gga	2	2	D.2	0.00015
N	209	R209R	agA	agG	2	2	P.1.10	0.000539
N	209	R209I	aGa	aTa	2	2	P.1.10	0.000539
N	209	R209K	aGa	aAa	2	2	P.1.12	0.000968
N	209	R209R	agA	agG	2	2	P.1.12	0.000968
N	209	R209del	AGA	---	2	2	P.1.14	0.000096
N	209	R209K	aGa	aAa	2	2	P.1.15	0.000465
N	209	R209K	aGa	aAa	2	2	P.1.17	0.000324
N	209	R209K	aGa	aAa	2	2	P.1.7	0.000639
N	209	R209I	aGa	aTa	1	1		0.055556
N	209	R209R	Aga	Cga	1	1		0.055556
N	209	R209T	aGa	aCa	1	1		0.055556
N	209	R209S	agA	agC	1	1	A	0.000387
N	209	R209T	aGa	aCa	1	1	A.1	0.000282
N	209	R209I	aGa	aTa	1	1	A.2	0.000662
N	209	R209I	aGa	aTa	1	1	A.2.4	0.003367
N	209	R209T	aGa	aCa	1	1	A.21	0.00277
N	209	R209S	agA	agT	1	1	A.5	0.001923
N	209	R209N	aGA	aAT	1	1	All	0
N	209	R209P	AGa	CCa	1	1	All	0
N	209	R209K	aGa	aAa	1	1	AM.4	0.003571
N	209	R209K	aGa	aAa	1	1	AU.2	0.002421
N	209	R209S	agA	agC	1	1	AY.100	0.000046
N	209	R209K	aGa	aAa	1	1	AY.100	0.000046
N	209	R209S	agA	agC	1	1	AY.102	0.000027
N	209	R209K	aGa	aAa	1	1	AY.102	0.000027
N	209	R209G	Aga	Gga	1	1	AY.102	0.000027
N	209	R209K	aGa	aAa	1	1	AY.103	0.000006
N	209	R209T	aGa	aCa	1	1	AY.106	0.000335
N	209	R209del	AGA	---	1	1	AY.110	0.000113
N	209	R209T	aGa	aCa	1	1	AY.110	0.000113
N	209	R209I	aGa	aTa	1	1	AY.113	0.000142
N	209	R209del	AGA	---	1	1	AY.116	0.000287
N	209	R209G	Aga	Gga	1	1	AY.117	0.000085
N	209	R209T	aGa	aCa	1	1	AY.117	0.000085
N	209	R209del	AGA	---	1	1	AY.117	0.000085
N	209	R209del2	AGa	--a	1	1	AY.118	0.000063
N	209	R209I	aGa	aTa	1	1	AY.118	0.000063
N	209	R209S	agA	agT	1	1	AY.119	0.000035
N	209	R209del1	aGa	a-a	1	1	AY.119	0.000035
N	209	R209K	aGa	aAa	1	1	AY.119	0.000035
N	209	R209T	aGa	aCa	1	1	AY.119	0.000035
N	209	R209S	agA	agC	1	1	AY.12	0.000316
N	209	R209K	aGa	aAa	1	1	AY.12	0.000316
N	209	R209R	Aga	Cga	1	1	AY.120	0.000037
N	209	R209T	aGa	aCa	1	1	AY.120	0.000037
N	209	R209G	Aga	Gga	1	1	AY.120	0.000037
N	209	R209S	agA	agT	1	1	AY.120.2	0.001285
N	209	R209T	aGa	aCa	1	1	AY.121	0.000135
N	209	R209del	AGA	---	1	1	AY.121	0.000135
N	209	R209T	aGa	aCa	1	1	AY.13	0.000161
N	209	R209I	aGa	aTa	1	1	AY.16	0.00038
N	209	R209T	aGa	aCa	1	1	AY.16.1	0.00047
N	209	R209del2	aGA	a--	1	1	AY.16.1	0.00047
N	209	R209I	aGa	aTa	1	1	AY.2	0.000356
N	209	R209del2	aGA	a--	1	1	AY.20	0.000039
N	209	R209S	agA	agT	1	1	AY.20	0.000039
N	209	R209R	Aga	Cga	1	1	AY.20	0.000039
N	209	R209K	aGa	aAa	1	1	AY.20	0.000039
N	209	R209S	agA	agC	1	1	AY.23	0.00007
N	209	R209G	Aga	Gga	1	1	AY.23	0.00007
N	209	R209T	aGa	aCa	1	1	AY.23	0.00007
N	209	R209del	AGA	---	1	1	AY.24	0.000431
N	209	R209I	aGa	aTa	1	1	AY.24	0.000431
N	209	R209T	aGa	aCa	1	1	AY.24	0.000431
N	209	R209R	agA	agG	1	1	AY.24	0.000431
N	209	R209X	Aga	Tga	1	1	AY.25	0.000006
N	209	R209del2	aGA	a--	1	1	AY.26	0.000028
N	209	R209del	AGA	---	1	1	AY.29	0.000016
N	209	R209T	aGa	aCa	1	1	AY.29	0.000016
N	209	R209del	AGA	---	1	1	AY.29.1	0.000221
N	209	R209I	aGa	aTa	1	1	AY.29.1	0.000221
N	209	R209X	Aga	Tga	1	1	AY.3	0.00001
N	209	R209T	aGa	aCa	1	1	AY.30	0.000396
N	209	R209X	Aga	Tga	1	1	AY.33	0.000067
N	209	R209S	agA	agC	1	1	AY.33	0.000067
N	209	R209R	agA	agG	1	1	AY.35	0.000233
N	209	R209I	aGa	aTa	1	1	AY.35	0.000233
N	209	R209T	aGa	aCa	1	1	AY.36	0.000148
N	209	R209I	aGa	aTa	1	1	AY.36	0.000148
N	209	R209X	Aga	Tga	1	1	AY.38	0.000499
N	209	R209del2	aGA	a--	1	1	AY.39	0.000025
N	209	R209T	aGa	aCa	1	1	AY.39	0.000025
N	209	R209K	aGa	aAa	1	1	AY.39	0.000025
N	209	R209T	aGa	aCa	1	1	AY.39.1.1	0.000725
N	209	R209del1	agA	ag-	1	1	AY.4	0.000002
N	209	R209del	AGA	---	1	1	AY.4.2	0.000022
N	209	R209R	agA	agG	1	1	AY.4.2	0.000022
N	209	R209I	aGa	aTa	1	1	AY.4.2	0.000022
N	209	R209del	AGA	---	1	1	AY.4.2.1	0.000149
N	209	R209I	aGa	aTa	1	1	AY.4.4	0.000409
N	209	R209K	aGa	aAa	1	1	AY.4.5	0.000107
N	209	R209S	agA	agC	1	1	AY.41	0.000294
N	209	R209G	Aga	Gga	1	1	AY.42	0.00004
N	209	R209S	agA	agC	1	1	AY.42	0.00004
N	209	R209R	Aga	Cga	1	1	AY.44	0.000006
N	209	R209del	AGA	---	1	1	AY.45	0.000122
N	209	R209G	Aga	Gga	1	1	AY.46	0.000104
N	209	R209S	agA	agC	1	1	AY.46	0.000104
N	209	R209del	AGA	---	1	1	AY.46	0.000104
N	209	R209G	Aga	Gga	1	1	AY.46.2	0.000635
N	209	R209del	AGA	---	1	1	AY.46.6	0.000072
N	209	R209del	AGA	---	1	1	AY.47	0.000031
N	209	R209T	aGa	aCa	1	1	AY.47	0.000031
N	209	R209del2	AGa	--a	1	1	AY.47	0.000031
N	209	R209del2	AGA	--N	1	1	AY.5	0.000021
N	209	R209I	aGa	aTa	1	1	AY.5.4	0.000277
N	209	R209G	Aga	Gga	1	1	AY.52	0.000814
N	209	R209I	aGa	aTa	1	1	AY.53	0.000288
N	209	R209del	AGA	---	1	1	AY.53	0.000288
N	209	R209I	aGa	aTa	1	1	AY.55	0.000917
N	209	R209I	aGa	aTa	1	1	AY.6	0.000041
N	209	R209S	agA	agC	1	1	AY.6	0.000041
N	209	R209G	Aga	Gga	1	1	AY.6	0.000041
N	209	R209I	aGa	aTa	1	1	AY.60	0.000938
N	209	R209G	Aga	Gga	1	1	AY.61	0.000105
N	209	R209del2	aGA	a--	1	1	AY.61	0.000105
N	209	R209T	aGa	aCa	1	1	AY.61	0.000105
N	209	R209K	aGa	aAa	1	1	AY.61	0.000105
N	209	R209I	aGa	aTa	1	1	AY.68	0.000274
N	209	R209del2	aGA	a--	1	1	AY.70	0.000209
N	209	R209G	Aga	Gga	1	1	AY.73	0.000665
N	209	R209del	AGA	---	1	1	AY.75	0.000056
N	209	R209del1	aGa	a-a	1	1	AY.75	0.000056
N	209	R209K	aGa	aAa	1	1	AY.75.1	0.00018
N	209	R209del	AGA	---	1	1	AY.75.1	0.00018
N	209	R209I	aGa	aTa	1	1	AY.77	0.001127
N	209	R209G	Aga	Gga	1	1	AY.84	0.000437
N	209	R209T	aGa	aCa	1	1	AY.85	0.000427
N	209	R209S	agA	agC	1	1	AY.88	0.000884
N	209	R209del	AGA	---	1	1	AY.9	0.000068
N	209	R209T	aGa	aCa	1	1	AY.9.1	0.000084
N	209	R209G	Aga	Gga	1	1	AY.9.1	0.000084
N	209	R209del	AGA	---	1	1	AY.9.2	0.000037
N	209	R209S	agA	agT	1	1	AY.9.2	0.000037
N	209	R209I	aGa	aTa	1	1	AY.91	0.00073
N	209	R209I	aGa	aTa	1	1	AY.93	0.000273
N	209	R209T	aGa	aCa	1	1	AY.98	0.000079
N	209	R209K	aGa	aAa	1	1	AY.98	0.000079
N	209	R209I	aGa	aTa	1	1	AY.98	0.000079
N	209	R209del	AGA	---	1	1	AY.98	0.000079
N	209	R209G	Aga	Gga	1	1	AY.98.1	0.000048
N	209	R209R	Aga	Cga	1	1	AY.98.1	0.000048
N	209	R209I	aGa	aTa	1	1	AY.99.2	0.000092
N	209	R209K	aGa	aAa	1	1	AY.99.2	0.000092
N	209	R209del	AGA	---	1	1	AZ.2	0.000821
N	209	R209R	agA	agG	1	1	AZ.2	0.000821
N	209	R209S	agA	agC	1	1	B	0.000128
N	209	R209G	Aga	Gga	1	1	B	0.000128
N	209	R209T	aGa	aCa	1	1	B	0.000128
N	209	R209S	agA	agT	1	1	B.1.1.1	0.000327
N	209	R209del	AGA	---	1	1	B.1.1.1	0.000327
N	209	R209K	aGa	aAa	1	1	B.1.1.10	0.001115
N	209	R209K	aGa	aAa	1	1	B.1.1.129	0.009174
N	209	R209S	agA	agC	1	1	B.1.1.189	0.001513
N	209	R209T	aGa	aCa	1	1	B.1.1.189	0.001513
N	209	R209S	agA	agT	1	1	B.1.1.214	0.000055
N	209	R209del	AGA	---	1	1	B.1.1.214	0.000055
N	209	R209S	agA	agC	1	1	B.1.1.222	0.000204
N	209	R209G	Aga	Gga	1	1	B.1.1.237	0.005405
N	209	R209G	Aga	Gga	1	1	B.1.1.255	0.00303
N	209	R209I	aGa	aTa	1	1	B.1.1.263	0.001558
N	209	R209S	agA	agC	1	1	B.1.1.270	0.010309
N	209	R209I	aGa	aTa	1	1	B.1.1.28	0.000311
N	209	R209S	agA	agC	1	1	B.1.1.28	0.000311
N	209	R209del	AGA	---	1	1	B.1.1.301	0.001179
N	209	R209del	AGA	---	1	1	B.1.1.303	0.002762
N	209	R209G	Aga	Gga	1	1	B.1.1.312	0.001912
N	209	R209del	AGA	---	1	1	B.1.1.312	0.001912
N	209	R209N	aGA	aAT	1	1	B.1.1.318	0.000302
N	209	R209X	Aga	Tga	1	1	B.1.1.318	0.000302
N	209	R209G	Aga	Gga	1	1	B.1.1.326	0.001761
N	209	R209del	AGA	---	1	1	B.1.1.33	0.000421
N	209	R209I	aGa	aTa	1	1	B.1.1.334	0.016393
N	209	R209del	AGA	---	1	1	B.1.1.369	0.000446
N	209	R209X	Aga	Tga	1	1	B.1.1.37	0.000193
N	209	R209I	aGa	aTa	1	1	B.1.1.372	0.000689
N	209	R209R	agA	agG	1	1	B.1.1.374	0.002375
N	209	R209K	aGa	aAa	1	1	B.1.1.39	0.00051
N	209	R209G	Aga	Gga	1	1	B.1.1.409	0.002833
N	209	R209del	AGA	---	1	1	B.1.1.413	0.006897
N	209	R209G	Aga	Gga	1	1	B.1.1.413	0.006897
N	209	R209I	aGa	aTa	1	1	B.1.1.421	0.030303
N	209	R209I	aGa	aTa	1	1	B.1.1.448	0.002033
N	209	R209K	aGa	aAa	1	1	B.1.1.464	0.001473
N	209	R209S	agA	agT	1	1	B.1.1.485	0.016667
N	209	R209T	aGa	aCa	1	1	B.1.1.50	0.000679
N	209	R209del	AGA	---	1	1	B.1.1.50	0.000679
N	209	R209G	Aga	Gga	1	1	B.1.1.517	0.006803
N	209	R209S	agA	agT	1	1	B.1.1.519	0.00004
N	209	R209G	Aga	Gga	1	1	B.1.1.525	0.005464
N	209	R209R	agA	agG	1	1	B.1.1.528	0.004808
N	209	R209del2	aGA	a--	1	1	B.1.1.7	0.000001
N	209	R209K	aGa	aAa	1	1	B.1.103	0.019231
N	209	R209I	aGa	aTa	1	1	B.1.108	0.005814
N	209	R209K	aGa	aAa	1	1	B.1.111	0.001175
N	209	R209I	aGa	aTa	1	1	B.1.12	0.008
N	209	R209K	aGa	aAa	1	1	B.1.147	0.000756
N	209	R209T	aGa	aCa	1	1	B.1.160	0.000031
N	209	R209del	AGA	---	1	1	B.1.160	0.000031
N	209	R209I	aGa	aTa	1	1	B.1.164	0.014925
N	209	R209I	aGa	aTa	1	1	B.1.169	0.014925
N	209	R209K	aGa	aAa	1	1	B.1.177.10	0.000878
N	209	R209T	aGa	aCa	1	1	B.1.177.24	0.001295
N	209	R209I	aGa	aTa	1	1	B.1.177.43	0.001477
N	209	R209I	aGa	aTa	1	1	B.1.177.51	0.004566
N	209	R209R	Aga	Cga	1	1	B.1.177.56	0.000668
N	209	R209I	aGa	aTa	1	1	B.1.177.57	0.000281
N	209	R209K	aGa	aAa	1	1	B.1.177.6	0.000977
N	209	R209E	AGA	GAG	1	1	B.1.177.63	0.002703
N	209	R209K	aGa	aAa	1	1	B.1.177.65	0.000665
N	209	R209K	aGa	aAa	1	1	B.1.177.7	0.000165
N	209	R209G	Aga	Gga	1	1	B.1.177.7	0.000165
N	209	R209T	aGa	aCa	1	1	B.1.177.72	0.00339
N	209	R209I	aGa	aTa	1	1	B.1.177.73	0.000566
N	209	R209K	aGa	aAa	1	1	B.1.177.73	0.000566
N	209	R209I	aGa	aTa	1	1	B.1.177.81	0.000189
N	209	R209I	aGa	aTa	1	1	B.1.177.86	0.000183
N	209	R209S	agA	agC	1	1	B.1.206	0.000816
N	209	R209K	aGa	aAa	1	1	B.1.210	0.002132
N	209	R209K	aGa	aAa	1	1	B.1.214.2	0.0006
N	209	R209I	aGa	aTa	1	1	B.1.214.3	0.007143
N	209	R209I	aGa	aTa	1	1	B.1.22	0.001318
N	209	R209G	Aga	Gga	1	1	B.1.221	0.000071
N	209	R209K	aGa	aAa	1	1	B.1.221.2	0.004016
N	209	R209K	aGa	aAa	1	1	B.1.223	0.002778
N	209	R209I	aGa	aTa	1	1	B.1.23	0.006061
N	209	R209I	aGa	aTa	1	1	B.1.233	0.014085
N	209	R209R	agA	agG	1	1	B.1.236	0.002053
N	209	R209K	aGa	aAa	1	1	B.1.237	0.004975
N	209	R209K	aGa	aAa	1	1	B.1.240	0.000216
N	209	R209del	AGA	---	1	1	B.1.258	0.000067
N	209	R209K	aGa	aAa	1	1	B.1.258	0.000067
N	209	R209I	aGa	aTa	1	1	B.1.258.11	0.000396
N	209	R209I	aGa	aTa	1	1	B.1.258.15	0.018868
N	209	R209T	aGa	aCa	1	1	B.1.258.17	0.000104
N	209	R209R	Aga	Cga	1	1	B.1.258.6	0.019608
N	209	R209I	aGa	aTa	1	1	B.1.258.7	0.001912
N	209	R209K	aGa	aAa	1	1	B.1.281	0.021739
N	209	R209I	aGa	aTa	1	1	B.1.289	0.00266
N	209	R209I	aGa	aTa	1	1	B.1.291	0.019231
N	209	R209I	aGa	aTa	1	1	B.1.293	0.0125
N	209	R209T	aGa	aCa	1	1	B.1.3	0.002618
N	209	R209K	aGa	aAa	1	1	B.1.302	0.013333
N	209	R209T	aGa	aCa	1	1	B.1.305	0.002151
N	209	R209I	aGa	aTa	1	1	B.1.308	0.034483
N	209	R209I	aGa	aTa	1	1	B.1.311	0.000275
N	209	R209I	aGa	aTa	1	1	B.1.320	0.001245
N	209	R209T	aGa	aCa	1	1	B.1.320	0.001245
N	209	R209S	agA	agC	1	1	B.1.329	0.000608
N	209	R209K	aGa	aAa	1	1	B.1.338	0.008621
N	209	R209T	aGa	aCa	1	1	B.1.351	0.00003
N	209	R209I	aGa	aTa	1	1	B.1.356	0.001727
N	209	R209I	aGa	aTa	1	1	B.1.36	0.000146
N	209	R209K	aGa	aAa	1	1	B.1.36	0.000146
N	209	R209G	Aga	Gga	1	1	B.1.36	0.000146
N	209	R209K	aGa	aAa	1	1	B.1.36.17	0.000494
N	209	R209K	aGa	aAa	1	1	B.1.36.22	0.001208
N	209	R209K	aGa	aAa	1	1	B.1.36.36	0.000602
N	209	R209del	AGA	---	1	1	B.1.36.36	0.000602
N	209	R209T	aGa	aCa	1	1	B.1.36.38	0.001642
N	209	R209S	agA	agC	1	1	B.1.36.38	0.001642
N	209	R209I	aGa	aTa	1	1	B.1.361	0.001289
N	209	R209I	aGa	aTa	1	1	B.1.367	0.000792
N	209	R209I	aGa	aTa	1	1	B.1.369	0.000285
N	209	R209del	AGA	---	1	1	B.1.369	0.000285
N	209	R209T	aGa	aCa	1	1	B.1.371	0.001122
N	209	R209X	Aga	Tga	1	1	B.1.389	0.001002
N	209	R209R	Aga	Cga	1	1	B.1.389	0.001002
N	209	R209T	aGa	aCa	1	1	B.1.396	0.000706
N	209	R209I	aGa	aTa	1	1	B.1.400	0.000429
N	209	R209K	aGa	aAa	1	1	B.1.411	0.003704
N	209	R209T	aGa	aCa	1	1	B.1.427	0.00005
N	209	R209S	agA	agT	1	1	B.1.427	0.00005
N	209	R209I	aGa	aTa	1	1	B.1.428	0.00102
N	209	R209R	Aga	Cga	1	1	B.1.429	0.000024
N	209	R209del	AGA	---	1	1	B.1.429	0.000024
N	209	R209K	aGa	aAa	1	1	B.1.429	0.000024
N	209	R209I	aGa	aTa	1	1	B.1.443	0.004673
N	209	R209I	aGa	aTa	1	1	B.1.451	0.008197
N	209	R209I	aGa	aTa	1	1	B.1.453	0.003236
N	209	R209I	aGa	aTa	1	1	B.1.462	0.007246
N	209	R209del	AGA	---	1	1	B.1.465	0.003802
N	209	R209I	aGa	aTa	1	1	B.1.470	0.001404
N	209	R209I	aGa	aTa	1	1	B.1.491	0.052632
N	209	R209I	aGa	aTa	1	1	B.1.497	0.000315
N	209	R209I	aGa	aTa	1	1	B.1.503	0.002488
N	209	R209K	aGa	aAa	1	1	B.1.509	0.000866
N	209	R209I	aGa	aTa	1	1	B.1.510	0.026316
N	209	R209K	aGa	aAa	1	1	B.1.521	0.004975
N	209	R209G	Aga	Gga	1	1	B.1.525	0.000113
N	209	R209del	AGA	---	1	1	B.1.525	0.000113
N	209	R209I	aGa	aTa	1	1	B.1.527	0.003704
N	209	R209K	aGa	aAa	1	1	B.1.540	0.009709
N	209	R209I	aGa	aTa	1	1	B.1.540	0.009709
N	209	R209T	aGa	aCa	1	1	B.1.545	0.014493
N	209	R209K	aGa	aAa	1	1	B.1.549	0.007194
N	209	R209I	aGa	aTa	1	1	B.1.554	0.004405
N	209	R209K	aGa	aAa	1	1	B.1.561	0.000397
N	209	R209K	aGa	aAa	1	1	B.1.564	0.000426
N	209	R209K	aGa	aAa	1	1	B.1.565	0.00081
N	209	R209I	aGa	aTa	1	1	B.1.566	0.019231
N	209	R209K	aGa	aAa	1	1	B.1.566	0.019231
N	209	R209K	aGa	aAa	1	1	B.1.568	0.001111
N	209	R209I	aGa	aTa	1	1	B.1.576	0.000907
N	209	R209G	Aga	Gga	1	1	B.1.576	0.000907
N	209	R209del	AGA	---	1	1	B.1.576	0.000907
N	209	R209del	AGA	---	1	1	B.1.580	0.004065
N	209	R209K	aGa	aAa	1	1	B.1.581	0.009434
N	209	R209T	aGa	aCa	1	1	B.1.582	0.000491
N	209	R209K	aGa	aAa	1	1	B.1.588	0.00091
N	209	R209K	aGa	aAa	1	1	B.1.590	0.004545
N	209	R209K	aGa	aAa	1	1	B.1.595	0.000261
N	209	R209I	aGa	aTa	1	1	B.1.595.4	0.007299
N	209	R209del2	aGA	a--	1	1	B.1.596	0.000087
N	209	R209del	AGA	---	1	1	B.1.596	0.000087
N	209	R209I	aGa	aTa	1	1	B.1.601	0.030303
N	209	R209I	aGa	aTa	1	1	B.1.602	0.006536
N	209	R209K	aGa	aAa	1	1	B.1.609	0.000479
N	209	R209T	aGa	aCa	1	1	B.1.609	0.000479
N	209	R209I	aGa	aTa	1	1	B.1.611	0.04
N	209	R209I	aGa	aTa	1	1	B.1.612	0.002653
N	209	R209del	AGA	---	1	1	B.1.617.1	0.000129
N	209	R209X	Aga	Tga	1	1	B.1.617.2	0.000004
N	209	R209R	agA	agG	1	1	B.1.625	0.002353
N	209	R209I	aGa	aTa	1	1	B.1.628	0.000352
N	209	R209I	aGa	aTa	1	1	B.1.78	0.008547
N	209	R209I	aGa	aTa	1	1	B.10	0.008264
N	209	R209K	aGa	aAa	1	1	B.3	0.000831
N	209	R209I	aGa	aTa	1	1	B.3	0.000831
N	209	R209K	aGa	aAa	1	1	B.31	0.003731
N	209	R209K	aGa	aAa	1	1	B.4	0.002208
N	209	R209I	aGa	aTa	1	1	B.4	0.002208
N	209	R209I	aGa	aTa	1	1	B.6	0.00091
N	209	R209I	aGa	aTa	1	1	B.6.6	0.000889
N	209	R209S	agA	agC	1	1	C.1	0.002392
N	209	R209S	agA	agC	1	1	C.26	0.007353
N	209	R209P	AGa	CCa	1	1	C.35	0.000774
N	209	R209del	AGA	---	1	1	C.36.3	0.000567
N	209	R209I	aGa	aTa	1	1	C.37	0.000116
N	209	R209G	Aga	Gga	1	1	C.37	0.000116
N	209	R209del	AGA	---	1	1	C.37.1	0.002618
N	209	R209G	Aga	Gga	1	1	C.38	0.008065
N	209	R209I	aGa	aTa	1	1	D.2	0.000075
N	209	R209T	aGa	aCa	1	1	D.2	0.000075
N	209	R209del	AGA	---	1	1	N.3	0.005814
N	209	R209del	AGA	---	1	1	N.5	0.001767
N	209	R209del	AGA	---	1	1	P.1	0.000016
N	209	R209R	agA	agG	1	1	P.1.1	0.000318
N	209	R209del	AGA	---	1	1	P.1.1	0.000318
N	209	R209I	aGa	aTa	1	1	P.1.12	0.000484
N	209	R209R	agA	agG	1	1	P.1.14	0.000048
N	209	R209G	Aga	Gga	1	1	P.1.14	0.000048
N	209	R209I	aGa	aTa	1	1	P.1.14	0.000048
N	209	R209I	aGa	aTa	1	1	P.1.15	0.000232
N	209	R209G	Aga	Gga	1	1	P.1.15	0.000232
N	209	R209S	agA	agC	1	1	P.1.15	0.000232
N	209	R209R	agA	agG	1	1	P.1.16	0.000374
N	209	R209K	aGa	aAa	1	1	P.1.16	0.000374
N	209	R209I	aGa	aTa	1	1	P.1.17	0.000162
N	209	R209T	aGa	aCa	1	1	P.1.2	0.001156
N	209	R209R	agA	agG	1	1	P.1.6	0.001946
N	209	R209I	aGa	aTa	1	1	P.1.7	0.000319
N	209	R209del	AGA	---	1	1	P.1.7	0.000319
N	209	R209I	aGa	aTa	1	1	P.1.8	0.004785
N	209	R209S	agA	agC	1	1	P.2	0.000187
N	209	R209X	Aga	Tga	1	1	P.2	0.000187
N	209	R209G	Aga	Gga	1	1	P.2	0.000187
N	209	R209del	AGA	---	1	1	P.2	0.000187
N	209	R209T	aGa	aCa	1	1	P.3	0.001595
N	209	R209del	AGA	---	1	1	Q.3	0.000145
N	209	R209G	Aga	Gga	1	1	Q.8	0.000165
N	209	R209K	aGa	aAa	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.