CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 208

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	208	A208S		nonsyn	Gct	Tct	29468	29464	0.999864	28895-28897
N	208	A208S		nonsyn	GCT	AGC	29468	2	0.0000678702	28895-28897
N	208	A208S		nonsyn	GcT	TcC	29468	1	0.0000339351	28895-28897
N	208	A208S		nonsyn	GcT	TcG	29468	1	0.0000339351	28895-28897
N	208	A208del		del	GCT	---	8461	8461	1	28895-28897
N	208	A208V		nonsyn	gCt	gTt	2670	2665	0.998127	28895-28897
N	208	A208V		nonsyn	gCT	gTC	2670	3	0.0011236	28895-28897
N	208	A208V		nonsyn	gCT	gTA	2670	2	0.000749064	28895-28897
N	208	A208A		syn	gcT	gcC	1096	1060	0.967153	28895-28897
N	208	A208A		syn	gcT	gcA	1096	29	0.0264599	28895-28897
N	208	A208A		syn	gcT	gcG	1096	7	0.00638686	28895-28897
N	208	A208G		nonsyn	gCt	gGt	671	668	0.995529	28895-28897
N	208	A208G		nonsyn	gCT	gGC	671	2	0.00298063	28895-28897
N	208	A208G		nonsyn	gCT	gGG	671	1	0.00149031	28895-28897
N	208	A208T		nonsyn	Gct	Act	240	239	0.995833	28895-28897
N	208	A208T		nonsyn	GcT	AcA	240	1	0.00416667	28895-28897
N	208	A208P		nonsyn	Gct	Cct	228	228	1	28895-28897
N	208	A208D		nonsyn	gCt	gAt	124	124	1	28895-28897
N	208	A208del2		del	gCT	g--	36	31	0.861111	28895-28897
N	208	A208del2		del	GCt	--t	36	5	0.138889	28895-28897
N	208	A208F		nonsyn	GCt	TTt	8	8	1	28895-28897
N	208	A208del1		del	gcT	gc-	4	3	0.75	28895-28897
N	208	A208del1		del	gCt	g-t	4	1	0.25	28895-28897
N	208	A208I		nonsyn	GCT	ATA	3	3	1	28895-28897
N	208	A208C		nonsyn	GCt	TGt	3	2	0.666667	28895-28897
N	208	A208C		nonsyn	GCT	TGC	3	1	0.333333	28895-28897
N	208	A208W		nonsyn	GCT	TGG	1	1	1	28895-28897
N	208	A208N		nonsyn	GCt	AAt	1	1	1	28895-28897

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	208	A208S	Gct	Tct	29464	29468	All	0.005635
N	208	A208S	GCT	AGC	2	29468	All	0
N	208	A208S	GcT	TcC	1	29468	All	0
N	208	A208S	GcT	TcG	1	29468	All	0
N	208	A208S	Gct	Tct	24590	24590	AY.103	0.152681
N	208	A208del	GCT	---	8461	8461	All	0.001618
N	208	A208del	GCT	---	3106	3106	B.1.1.318	0.937236
N	208	A208V	gCt	gTt	2665	2670	All	0.00051
N	208	A208V	gCT	gTC	3	2670	All	0.000001
N	208	A208V	gCT	gTA	2	2670	All	0
N	208	A208S	Gct	Tct	1532	1533	B.1.617.2	0.005769
N	208	A208S	GCT	AGC	1	1533	B.1.617.2	0.000004
N	208	A208V	gCt	gTt	1450	1453	B.1.1.7	0.001298
N	208	A208V	gCT	gTC	3	1453	B.1.1.7	0.000003
N	208	A208del	GCT	---	1186	1186	AZ.2	0.973727
N	208	A208del	GCT	---	1153	1153	AZ.1	1
N	208	A208A	gcT	gcC	1060	1096	All	0.000203
N	208	A208A	gcT	gcA	29	1096	All	0.000006
N	208	A208A	gcT	gcG	7	1096	All	0.000001
N	208	A208S	Gct	Tct	689	689	B.1.1.7	0.000617
N	208	A208G	gCt	gGt	668	671	All	0.000128
N	208	A208G	gCT	gGC	2	671	All	0
N	208	A208G	gCT	gGG	1	671	All	0
N	208	A208del	GCT	---	621	621	AZ.3	0.943769
N	208	A208del	GCT	---	589	589	B.1.1.7	0.000527
N	208	A208A	gcT	gcC	545	545	B.1.1.153	0.596933
N	208	A208G	gCt	gGt	463	463	A.3	0.97065
N	208	A208S	Gct	Tct	329	329	P.1	0.005183
N	208	A208A	gcT	gcC	323	326	AY.21	0.612903
N	208	A208A	gcT	gcG	3	326	AY.21	0.005693
N	208	A208S	Gct	Tct	284	284	AY.9.1	0.023778
N	208	A208del	GCT	---	279	279	AZ.4	0.936242
N	208	A208del	GCT	---	274	274	AZ.5	0.961404
N	208	A208S	Gct	Tct	271	271	AY.4	0.000422
N	208	A208T	Gct	Act	239	240	All	0.000046
N	208	A208T	GcT	AcA	1	240	All	0
N	208	A208P	Gct	Cct	228	228	All	0.000044
N	208	A208S	Gct	Tct	194	194	AY.43	0.00086
N	208	A208D	gCt	gAt	124	124	All	0.000024
N	208	A208V	gCt	gTt	123	123	AY.4	0.000191
N	208	A208del	GCT	---	121	121	AZ.2.1	0.98374
N	208	A208V	gCt	gTt	121	121	B.1.617.2	0.000456
N	208	A208V	gCt	gTt	118	118	AY.74	0.013646
N	208	A208del	GCT	---	118	118	AZ.6	0.991597
N	208	A208P	Gct	Cct	117	117	B.1.617.2	0.000441
N	208	A208S	Gct	Tct	110	110	AY.46.6	0.007943
N	208	A208S	Gct	Tct	108	108	AY.29	0.001704
N	208	A208S	Gct	Tct	106	106	AY.102	0.00281
N	208	A208G	gCt	gGt	86	86	AY.4	0.000134
N	208	A208del	GCT	---	74	74	B.1.1	0.001342
N	208	A208T	Gct	Act	72	72	B.1.1.7	0.000064
N	208	A208V	gCt	gTt	71	71	B.1.427	0.003585
N	208	A208V	gCt	gTt	69	69	AY.103	0.000428
N	208	A208G	gCt	gGt	68	68	B.1.1.7	0.000061
N	208	A208del	GCT	---	68	68	B.1.617.2	0.000256
N	208	A208V	gCt	gTt	67	67	B.1.311	0.018396
N	208	A208S	Gct	Tct	65	65	AY.25	0.000391
N	208	A208P	Gct	Cct	62	62	AY.100	0.002852
N	208	A208V	gCt	gTt	62	62	B.1.221.3	0.051667
N	208	A208S	Gct	Tct	54	56	B.1	0.000495
N	208	A208S	GcT	TcC	1	56	B.1	0.000009
N	208	A208S	GcT	TcG	1	56	B.1	0.000009
N	208	A208S	Gct	Tct	55	55	AY.44	0.000335
N	208	A208del	GCT	---	51	51	AY.4	0.000079
N	208	A208del	GCT	---	48	48	AY.103	0.000298
N	208	A208V	gCt	gTt	47	47	AY.5	0.000971
N	208	A208D	gCt	gAt	47	47	B.1.1.7	0.000042
N	208	A208del	GCT	---	46	46	AY.118	0.002882
N	208	A208del	GCT	---	46	46	AY.74	0.00532
N	208	A208S	Gct	Tct	44	44	AY.3	0.000438
N	208	A208del	GCT	---	44	44	B.1	0.000403
N	208	A208A	gcT	gcC	42	44	B.1.1.7	0.000038
N	208	A208A	gcT	gcA	1	44	B.1.1.7	0.000001
N	208	A208A	gcT	gcG	1	44	B.1.1.7	0.000001
N	208	A208V	gCt	gTt	43	43	P.1	0.000677
N	208	A208S	Gct	Tct	42	42	AY.108	0.046307
N	208	A208S	Gct	Tct	42	42	AY.111	0.007692
N	208	A208S	Gct	Tct	42	42	AY.39	0.001038
N	208	A208S	Gct	Tct	42	42	B.1.2	0.00037
N	208	A208del	GCT	---	39	39	AY.25	0.000235
N	208	A208S	Gct	Tct	37	37	AY.20	0.001438
N	208	A208del2	gCT	g--	31	36	All	0.000006
N	208	A208del2	GCt	--t	5	36	All	0.000001
N	208	A208D	gCt	gAt	36	36	AY.43	0.000159
N	208	A208del	GCT	---	34	34	B.1.1.93	0.871795
N	208	A208V	gCt	gTt	32	32	B.1.1	0.000581
N	208	A208del	GCT	---	31	31	AY.43	0.000137
N	208	A208S	Gct	Tct	31	31	P.1.17	0.005015
N	208	A208V	gCt	gTt	30	30	AY.3.1	0.002558
N	208	A208del	GCT	---	30	30	B.1.1.370	0.379747
N	208	A208S	Gct	Tct	29	29	AY.42	0.001167
N	208	A208del	GCT	---	28	28	AY.44	0.00017
N	208	A208del	GCT	---	27	27	AY.3	0.000269
N	208	A208S	Gct	Tct	27	27	P.1.12	0.013069
N	208	A208S	Gct	Tct	27	27	P.1.14	0.001291
N	208	A208del	GCT	---	26	26	AY.100	0.001196
N	208	A208S	Gct	Tct	26	26	AY.119	0.000918
N	208	A208S	Gct	Tct	26	26	P.1.15	0.006041
N	208	A208del2	gCT	g--	25	25	B.1.1.318	0.007544
N	208	A208S	Gct	Tct	24	24	AY.117	0.002028
N	208	A208A	gcT	gcC	22	24	AY.4	0.000034
N	208	A208A	gcT	gcA	2	24	AY.4	0.000003
N	208	A208V	gCt	gTt	23	23	AY.26	0.000651
N	208	A208S	Gct	Tct	23	23	B.1.526	0.000541
N	208	A208del	GCT	---	23	23	Q.2	0.01411
N	208	A208V	gCt	gTt	22	22	AY.25	0.000132
N	208	A208V	gCt	gTt	21	21	AY.3	0.000209
N	208	A208T	Gct	Act	21	21	AY.4	0.000033
N	208	A208V	gCt	gTt	21	21	AY.43	0.000093
N	208	A208V	gCt	gTt	21	21	AY.44	0.000128
N	208	A208S	Gct	Tct	21	21	B.1.1	0.000381
N	208	A208del	GCT	---	21	21	B.1.1.222	0.004284
N	208	A208A	gcT	gcC	21	21	B.1.2	0.000185
N	208	A208del	GCT	---	20	20	AY.4.2.1	0.00298
N	208	A208S	Gct	Tct	20	20	B.1.177	0.000263
N	208	A208G	gCt	gGt	19	19	AY.42	0.000764
N	208	A208S	Gct	Tct	19	19	AY.5	0.000392
N	208	A208S	Gct	Tct	19	19	B.1.429	0.000447
N	208	A208V	gCt	gTt	18	18	AY.102	0.000477
N	208	A208del	GCT	---	18	18	AY.52	0.014658
N	208	A208S	Gct	Tct	18	18	P.1.10	0.00485
N	208	A208S	Gct	Tct	17	17	B.1.1.397	0.038288
N	208	A208S	Gct	Tct	17	17	B.1.232	0.009135
N	208	A208S	Gct	Tct	16	16	AY.26	0.000453
N	208	A208S	Gct	Tct	16	16	AY.45	0.001947
N	208	A208V	gCt	gTt	16	16	B.1	0.000147
N	208	A208S	Gct	Tct	15	15	AY.113	0.002136
N	208	A208T	Gct	Act	14	14	AY.25	0.000084
N	208	A208A	gcT	gcC	12	14	B.1	0.00011
N	208	A208A	gcT	gcG	2	14	B.1	0.000018
N	208	A208A	gcT	gcA	14	14	B.1.177.60	0.003058
N	208	A208T	Gct	Act	14	14	P.1	0.000221
N	208	A208T	Gct	Act	13	13	AY.20	0.000505
N	208	A208T	Gct	Act	13	13	AY.43	0.000058
N	208	A208S	Gct	Tct	13	13	AY.46.2	0.008259
N	208	A208del	GCT	---	13	13	AY.47	0.000404
N	208	A208del	GCT	---	13	13	AY.99.2	0.001198
N	208	A208V	gCt	gTt	13	13	B.1.1.214	0.000721
N	208	A208S	Gct	Tct	13	13	B.1.1.456	0.722222
N	208	A208del	GCT	---	13	13	B.1.1.519	0.000516
N	208	A208T	Gct	Act	13	13	B.1.213	0.19403
N	208	A208G	gCt	gGt	10	12	B.1	0.000092
N	208	A208G	gCT	gGC	1	12	B.1	0.000009
N	208	A208G	gCT	gGG	1	12	B.1	0.000009
N	208	A208S	Gct	Tct	12	12	B.1.177.67	0.091603
N	208	A208A	gcT	gcC	12	12	R.1	0.00108
N	208	A208V	gCt	gTt	11	11	AY.5.4	0.003044
N	208	A208A	gcT	gcC	10	11	B.1.1	0.000181
N	208	A208A	gcT	gcA	1	11	B.1.1	0.000018
N	208	A208P	Gct	Cct	11	11	B.1.1.318	0.003319
N	208	A208S	Gct	Tct	11	11	B.1.1.519	0.000437
N	208	A208S	Gct	Tct	10	10	AY.116	0.002868
N	208	A208del	GCT	---	10	10	AY.23	0.000697
N	208	A208del	GCT	---	10	10	B.1.214	0.03663
N	208	A208V	gCt	gTt	10	10	B.1.596	0.000871
N	208	A208A	gcT	gcC	10	10	B.1.617.2	0.000038
N	208	A208del	GCT	---	9	9	AY.26	0.000255
N	208	A208S	Gct	Tct	9	9	AY.34	0.000873
N	208	A208A	gcT	gcC	9	9	AY.4.2	0.000195
N	208	A208del	GCT	---	9	9	AY.45	0.001095
N	208	A208S	Gct	Tct	9	9	AY.46	0.000937
N	208	A208S	Gct	Tct	9	9	AY.47	0.00028
N	208	A208V	gCt	gTt	9	9	P.1.17	0.001456
N	208	A208S	Gct	Tct	9	9	P.2	0.00168
N	208	A208F	GCt	TTt	8	8	All	0.000002
N	208	A208del	GCT	---	8	8	AT.1	0.041026
N	208	A208S	Gct	Tct	8	8	AY.100	0.000368
N	208	A208S	Gct	Tct	8	8	AY.118	0.000501
N	208	A208S	Gct	Tct	8	8	AY.14	0.000704
N	208	A208del	GCT	---	8	8	AY.21	0.01518
N	208	A208S	Gct	Tct	8	8	AY.24	0.003448
N	208	A208D	gCt	gAt	8	8	AY.44	0.000049
N	208	A208V	gCt	gTt	8	8	AY.47	0.000249
N	208	A208S	Gct	Tct	8	8	AY.75	0.000448
N	208	A208P	Gct	Cct	8	8	B.1.1.311	0.002865
N	208	A208V	gCt	gTt	8	8	B.1.1.519	0.000318
N	208	A208del	GCT	---	8	8	D.2	0.0006
N	208	A208S	Gct	Tct	8	8	D.2	0.0006
N	208	A208S	Gct	Tct	7	7	AY.120	0.00026
N	208	A208S	Gct	Tct	7	7	AY.33	0.000467
N	208	A208S	Gct	Tct	7	7	AY.36	0.001037
N	208	A208S	Gct	Tct	7	7	AY.4.2	0.000152
N	208	A208P	Gct	Cct	7	7	AZ.3	0.010638
N	208	A208S	Gct	Tct	6	7	B.1.617.1	0.000774
N	208	A208S	GCT	AGC	1	7	B.1.617.1	0.000129
N	208	A208S	Gct	Tct	7	7	P.1.7	0.002235
N	208	A208V	gCt	gTt	7	7	Q.1	0.000884
N	208	A208del	GCT	---	7	7	Q.8	0.001154
N	208	A208T	Gct	Act	6	6	AY.103	0.000037
N	208	A208del	GCT	---	6	6	AY.119	0.000212
N	208	A208V	gCt	gTt	6	6	AY.27	0.000388
N	208	A208S	Gct	Tct	6	6	AY.39.1	0.000238
N	208	A208P	Gct	Cct	6	6	AY.4.5	0.000645
N	208	A208del	GCT	---	6	6	AY.75	0.000336
N	208	A208del	GCT	---	6	6	AY.85	0.002563
N	208	A208S	Gct	Tct	6	6	AY.9.2	0.00022
N	208	A208S	Gct	Tct	6	6	AY.99	0.006296
N	208	A208A	gcT	gcC	6	6	B.1.1.329	0.023077
N	208	A208V	gCt	gTt	6	6	B.1.177	0.000079
N	208	A208S	Gct	Tct	6	6	B.1.221	0.000426
N	208	A208del	GCT	---	6	6	P.1	0.000095
N	208	A208S	Gct	Tct	6	6	P.1.16	0.002245
N	208	A208V	gCt	gTt	6	6	Q.3	0.00087
N	208	A208del	GCT	---	5	5	AY.102	0.000133
N	208	A208F	GCt	TTt	5	5	AY.103	0.000031
N	208	A208del	GCT	---	5	5	AY.27	0.000324
N	208	A208del	GCT	---	5	5	AY.29	0.000079
N	208	A208S	Gct	Tct	5	5	AY.32	0.002662
N	208	A208D	gCt	gAt	5	5	AY.4	0.000008
N	208	A208V	gCt	gTt	5	5	AY.4.5	0.000537
N	208	A208T	Gct	Act	5	5	AY.44	0.00003
N	208	A208S	Gct	Tct	5	5	AY.48	0.002326
N	208	A208V	gCt	gTt	5	5	AY.61	0.000524
N	208	A208S	Gct	Tct	5	5	AY.65	0.002665
N	208	A208S	Gct	Tct	5	5	AY.98.1	0.000242
N	208	A208V	gCt	gTt	5	5	B.1.1.28	0.001556
N	208	A208S	Gct	Tct	5	5	B.1.1.317	0.002058
N	208	A208V	gCt	gTt	5	5	B.1.234	0.00066
N	208	A208T	Gct	Act	5	5	B.1.258.14	0.004902
N	208	A208del	GCT	---	5	5	B.1.349	0.003574
N	208	A208S	Gct	Tct	5	5	B.1.565	0.004052
N	208	A208del	GCT	---	5	5	B.1.617.1	0.000645
N	208	A208S	Gct	Tct	5	5	B.1.628	0.001762
N	208	A208S	Gct	Tct	5	5	C.37	0.00058
N	208	A208S	Gct	Tct	5	5	P.1.1	0.001588
N	208	A208V	gCt	gTt	5	5	P.1.14	0.000239
N	208	A208V	gCt	gTt	5	5	Q.8	0.000825
N	208	A208V	gCt	gTt	4	4	A	0.001548
N	208	A208V	gCt	gTt	4	4	A.23.1	0.002817
N	208	A208del1	gcT	gc-	3	4	All	0.000001
N	208	A208del1	gCt	g-t	1	4	All	0
N	208	A208del	GCT	---	4	4	AY.101	0.001962
N	208	A208D	gCt	gAt	4	4	AY.103	0.000025
N	208	A208T	Gct	Act	4	4	AY.116	0.001147
N	208	A208del	GCT	---	4	4	AY.120	0.000149
N	208	A208S	Gct	Tct	4	4	AY.121	0.000541
N	208	A208V	gCt	gTt	4	4	AY.14	0.000352
N	208	A208V	gCt	gTt	4	4	AY.23	0.000279
N	208	A208V	gCt	gTt	4	4	AY.24	0.001724
N	208	A208S	Gct	Tct	4	4	AY.3.1	0.000341
N	208	A208V	gCt	gTt	4	4	AY.36	0.000593
N	208	A208del	GCT	---	4	4	AY.39	0.000099
N	208	A208V	gCt	gTt	4	4	AY.39	0.000099
N	208	A208V	gCt	gTt	4	4	AY.4.2	0.000087
N	208	A208del	GCT	---	4	4	AY.4.2	0.000087
N	208	A208V	gCt	gTt	4	4	AY.57	0.002625
N	208	A208del	GCT	---	4	4	AY.59	0.002119
N	208	A208T	Gct	Act	4	4	AY.6	0.000165
N	208	A208S	Gct	Tct	4	4	AY.63	0.001547
N	208	A208V	gCt	gTt	4	4	AY.7.1	0.000451
N	208	A208S	Gct	Tct	4	4	AY.7.2	0.002237
N	208	A208S	Gct	Tct	4	4	AY.75.1	0.000721
N	208	A208del	GCT	---	4	4	AY.9.1	0.000335
N	208	A208T	Gct	Act	4	4	B.1	0.000037
N	208	A208S	Gct	Tct	4	4	B.1.1.222	0.000816
N	208	A208del	GCT	---	4	4	B.1.1.232	0.00726
N	208	A208S	Gct	Tct	4	4	B.1.1.389	0.024242
N	208	A208A	gcT	gcC	4	4	B.1.110.3	0.002874
N	208	A208T	Gct	Act	4	4	B.1.177	0.000053
N	208	A208S	Gct	Tct	4	4	B.1.177.21	0.000306
N	208	A208V	gCt	gTt	4	4	B.1.232	0.002149
N	208	A208del	GCT	---	4	4	B.1.243	0.000278
N	208	A208T	Gct	Act	4	4	B.1.3	0.010471
N	208	A208del	GCT	---	4	4	B.1.526	0.000094
N	208	A208del	GCT	---	4	4	B.1.576	0.003626
N	208	A208T	Gct	Act	4	4	B.1.617.2	0.000015
N	208	A208V	gCt	gTt	4	4	C.37	0.000464
N	208	A208V	gCt	gTt	4	4	P.1.7	0.001277
N	208	A208V	gCt	gTt	3	3	A.2.5	0.001497
N	208	A208V	gCt	gTt	3	3	AD.2	0.000657
N	208	A208I	GCT	ATA	3	3	All	0.000001
N	208	A208C	GCt	TGt	2	3	All	0
N	208	A208C	GCT	TGC	1	3	All	0
N	208	A208T	Gct	Act	3	3	AY.1	0.001187
N	208	A208V	gCt	gTt	3	3	AY.100	0.000138
N	208	A208A	gcT	gcC	3	3	AY.103	0.000019
N	208	A208S	Gct	Tct	3	3	AY.106	0.001005
N	208	A208S	Gct	Tct	3	3	AY.107	0.001398
N	208	A208S	Gct	Tct	3	3	AY.114	0.000693
N	208	A208S	Gct	Tct	3	3	AY.116.1	0.000934
N	208	A208S	Gct	Tct	3	3	AY.16	0.001139
N	208	A208del	GCT	---	3	3	AY.20	0.000117
N	208	A208D	gCt	gAt	3	3	AY.25	0.000018
N	208	A208del	GCT	---	3	3	AY.30	0.001187
N	208	A208V	gCt	gTt	3	3	AY.32	0.001597
N	208	A208A	gcT	gcA	3	3	AY.32	0.001597
N	208	A208del	GCT	---	3	3	AY.36	0.000445
N	208	A208del	GCT	---	3	3	AY.4.5	0.000322
N	208	A208A	gcT	gcC	3	3	AY.44	0.000018
N	208	A208del	GCT	---	3	3	AY.46	0.000312
N	208	A208S	Gct	Tct	3	3	AY.46.4	0.000494
N	208	A208del	GCT	---	3	3	AY.5	0.000062
N	208	A208V	gCt	gTt	3	3	AY.52	0.002443
N	208	A208del	GCT	---	3	3	AY.63	0.001161
N	208	A208S	Gct	Tct	3	3	AY.72	0.004082
N	208	A208V	gCt	gTt	3	3	AY.9.1	0.000251
N	208	A208V	gCt	gTt	3	3	AY.98.1	0.000145
N	208	A208del	GCT	---	3	3	B	0.000383
N	208	A208D	gCt	gAt	3	3	B.1	0.000027
N	208	A208del	GCT	---	3	3	B.1.1.1	0.00098
N	208	A208del	GCT	---	3	3	B.1.1.170	0.003741
N	208	A208S	Gct	Tct	3	3	B.1.1.241	0.006211
N	208	A208S	Gct	Tct	3	3	B.1.1.311	0.001074
N	208	A208V	gCt	gTt	3	3	B.1.1.429	0.013825
N	208	A208del	GCT	---	3	3	B.1.1.434	0.001046
N	208	A208del2	gCT	g--	3	3	B.1.1.7	0.000003
N	208	A208del	GCT	---	3	3	B.1.1.70	0.001023
N	208	A208A	gcT	gcC	3	3	B.1.177	0.00004
N	208	A208S	Gct	Tct	3	3	B.1.177.4	0.000633
N	208	A208del	GCT	---	3	3	B.1.2	0.000026
N	208	A208V	gCt	gTt	3	3	B.1.351	0.000089
N	208	A208del	GCT	---	3	3	B.1.36	0.000438
N	208	A208V	gCt	gTt	3	3	B.1.617.1	0.000387
N	208	A208G	gCt	gGt	3	3	B.1.617.2	0.000011
N	208	A208V	gCt	gTt	3	3	C.3	0.022901
N	208	A208S	Gct	Tct	3	3	C.36	0.002732
N	208	A208del	GCT	---	3	3	C.37	0.000348
N	208	A208A	gcT	gcA	3	3	P.1.14	0.000143
N	208	A208del	GCT	---	3	3	P.1.14	0.000143
N	208	A208V	gCt	gTt	3	3	P.1.15	0.000697
N	208	A208S	Gct	Tct	3	3	P.1.2	0.003468
N	208	A208del	GCT	---	3	3	P.2	0.00056
N	208	A208S	Gct	Tct	3	3	P.3	0.004785
N	208	A208A	gcT	gcC	2	2		0.111111
N	208	A208G	gCt	gGt	2	2	A	0.000774
N	208	A208G	gCt	gGt	2	2	A.1	0.000564
N	208	A208V	gCt	gTt	2	2	A.1	0.000564
N	208	A208A	gcT	gcC	2	2	AY.10	0.00106
N	208	A208S	Gct	Tct	2	2	AY.101	0.000981
N	208	A208S	Gct	Tct	2	2	AY.110	0.000225
N	208	A208del	GCT	---	2	2	AY.110	0.000225
N	208	A208V	gCt	gTt	2	2	AY.113	0.000285
N	208	A208P	Gct	Cct	2	2	AY.117	0.000169
N	208	A208V	gCt	gTt	2	2	AY.117	0.000169
N	208	A208del	GCT	---	2	2	AY.117	0.000169
N	208	A208V	gCt	gTt	2	2	AY.119	0.000071
N	208	A208A	gcT	gcC	2	2	AY.120	0.000074
N	208	A208S	Gct	Tct	2	2	AY.120.1	0.000642
N	208	A208V	gCt	gTt	2	2	AY.121	0.000271
N	208	A208V	gCt	gTt	2	2	AY.20	0.000078
N	208	A208S	Gct	Tct	2	2	AY.23	0.000139
N	208	A208S	Gct	Tct	2	2	AY.29.1	0.000441
N	208	A208A	gcT	gcA	1	2	AY.3	0.00001
N	208	A208A	gcT	gcC	1	2	AY.3	0.00001
N	208	A208del	GCT	---	2	2	AY.33	0.000134
N	208	A208del	GCT	---	2	2	AY.34	0.000194
N	208	A208P	Gct	Cct	2	2	AY.4	0.000003
N	208	A208T	Gct	Act	2	2	AY.4.2	0.000043
N	208	A208del	GCT	---	2	2	AY.40	0.001929
N	208	A208V	gCt	gTt	2	2	AY.42	0.00008
N	208	A208A	gcT	gcC	2	2	AY.42	0.00008
N	208	A208V	gCt	gTt	2	2	AY.45	0.000243
N	208	A208A	gcT	gcA	1	2	AY.46	0.000104
N	208	A208A	gcT	gcC	1	2	AY.46	0.000104
N	208	A208S	Gct	Tct	2	2	AY.5.4	0.000553
N	208	A208del	GCT	---	2	2	AY.50	0.001599
N	208	A208del	GCT	---	2	2	AY.54	0.000191
N	208	A208S	Gct	Tct	2	2	AY.54	0.000191
N	208	A208S	Gct	Tct	2	2	AY.7.1	0.000225
N	208	A208del	GCT	---	2	2	AY.7.2	0.001119
N	208	A208S	Gct	Tct	2	2	AY.70	0.000417
N	208	A208S	Gct	Tct	2	2	AY.74	0.000231
N	208	A208V	gCt	gTt	2	2	AY.82	0.002714
N	208	A208D	gCt	gAt	2	2	AY.9	0.000135
N	208	A208del	GCT	---	2	2	AY.9.2	0.000073
N	208	A208V	gCt	gTt	2	2	AY.9.2	0.000073
N	208	A208S	Gct	Tct	2	2	AY.92	0.000575
N	208	A208S	Gct	Tct	2	2	AY.93	0.000546
N	208	A208S	Gct	Tct	2	2	AY.94	0.000885
N	208	A208S	Gct	Tct	2	2	AY.97	0.003401
N	208	A208D	gCt	gAt	2	2	AY.98.1	0.000097
N	208	A208S	Gct	Tct	2	2	B	0.000256
N	208	A208G	gCt	gGt	2	2	B	0.000256
N	208	A208C	GCt	TGt	1	2	B.1	0.000009
N	208	A208C	GCT	TGC	1	2	B.1	0.000009
N	208	A208T	Gct	Act	2	2	B.1.1	0.000036
N	208	A208P	Gct	Cct	2	2	B.1.1	0.000036
N	208	A208S	Gct	Tct	2	2	B.1.1.1	0.000653
N	208	A208del	GCT	---	2	2	B.1.1.142	0.035088
N	208	A208V	gCt	gTt	2	2	B.1.1.261	0.017241
N	208	A208S	Gct	Tct	2	2	B.1.1.28	0.000622
N	208	A208del	GCT	---	2	2	B.1.1.291	0.001485
N	208	A208A	gcT	gcA	2	2	B.1.1.306	0.000877
N	208	A208del	GCT	---	2	2	B.1.1.307	0.005063
N	208	A208del	GCT	---	2	2	B.1.1.312	0.003824
N	208	A208G	gCt	gGt	1	2	B.1.1.318	0.000302
N	208	A208G	gCT	gGC	1	2	B.1.1.318	0.000302
N	208	A208S	Gct	Tct	2	2	B.1.1.33	0.000842
N	208	A208del	GCT	---	2	2	B.1.1.33	0.000842
N	208	A208del	GCT	---	2	2	B.1.1.416	0.00181
N	208	A208A	gcT	gcC	2	2	B.1.1.44	0.004819
N	208	A208A	gcT	gcC	2	2	B.1.1.519	0.000079
N	208	A208V	gCt	gTt	2	2	B.1.1.52	0.02439
N	208	A208S	Gct	Tct	2	2	B.1.1.526	0.007092
N	208	A208S	Gct	Tct	2	2	B.1.1.528	0.009615
N	208	A208P	Gct	Cct	2	2	B.1.1.7	0.000002
N	208	A208S	Gct	Tct	2	2	B.1.1.70	0.000682
N	208	A208V	gCt	gTt	2	2	B.1.1.83	0.00542
N	208	A208S	Gct	Tct	2	2	B.1.112	0.010363
N	208	A208S	Gct	Tct	2	2	B.1.177.82	0.000955
N	208	A208T	Gct	Act	2	2	B.1.2	0.000018
N	208	A208del	GCT	---	2	2	B.1.336	0.004878
N	208	A208V	gCt	gTt	2	2	B.1.349	0.00143
N	208	A208S	Gct	Tct	2	2	B.1.351	0.000059
N	208	A208del	GCT	---	2	2	B.1.351	0.000059
N	208	A208S	Gct	Tct	2	2	B.1.416.1	0.003125
N	208	A208del	GCT	---	2	2	B.1.517	0.000854
N	208	A208S	Gct	Tct	2	2	B.1.525	0.000226
N	208	A208del	GCT	---	2	2	B.1.525	0.000226
N	208	A208G	gCt	gGt	2	2	B.1.526	0.000047
N	208	A208S	Gct	Tct	2	2	B.1.582	0.000981
N	208	A208D	gCt	gAt	2	2	B.1.617.2	0.000008
N	208	A208A	gcT	gcC	2	2	B.3	0.001661
N	208	A208A	gcT	gcC	1	2	P.1	0.000016
N	208	A208A	gcT	gcA	1	2	P.1	0.000016
N	208	A208T	Gct	Act	2	2	P.1.15	0.000465
N	208	A208T	Gct	Act	2	2	P.1.16	0.000748
N	208	A208V	gCt	gTt	2	2	P.7	0.008734
N	208	A208T	Gct	Act	1	1		0.055556
N	208	A208del	GCT	---	1	1	A.1	0.000282
N	208	A208del	GCT	---	1	1	A.23.1	0.000704
N	208	A208S	Gct	Tct	1	1	AD.2	0.000219
N	208	A208V	gCt	gTt	1	1	AE.8	0.000489
N	208	A208W	GCT	TGG	1	1	All	0
N	208	A208N	GCt	AAt	1	1	All	0
N	208	A208V	gCt	gTt	1	1	AY.1	0.000396
N	208	A208A	gcT	gcC	1	1	AY.100	0.000046
N	208	A208V	gCt	gTt	1	1	AY.101	0.00049
N	208	A208G	gCt	gGt	1	1	AY.102	0.000027
N	208	A208A	gcT	gcG	1	1	AY.102	0.000027
N	208	A208P	Gct	Cct	1	1	AY.103	0.000006
N	208	A208C	GCt	TGt	1	1	AY.103	0.000006
N	208	A208S	Gct	Tct	1	1	AY.104	0.001984
N	208	A208T	Gct	Act	1	1	AY.109	0.00074
N	208	A208V	gCt	gTt	1	1	AY.111	0.000183
N	208	A208del	GCT	---	1	1	AY.113	0.000142
N	208	A208del	GCT	---	1	1	AY.116	0.000287
N	208	A208V	gCt	gTt	1	1	AY.118	0.000063
N	208	A208I	GCT	ATA	1	1	AY.119	0.000035
N	208	A208S	Gct	Tct	1	1	AY.12	0.000316
N	208	A208P	Gct	Cct	1	1	AY.120	0.000037
N	208	A208V	gCt	gTt	1	1	AY.120	0.000037
N	208	A208S	Gct	Tct	1	1	AY.120.2	0.001285
N	208	A208S	Gct	Tct	1	1	AY.120.2.1	0.000498
N	208	A208del	GCT	---	1	1	AY.121	0.000135
N	208	A208A	gcT	gcC	1	1	AY.121	0.000135
N	208	A208S	Gct	Tct	1	1	AY.13	0.000161
N	208	A208del	GCT	---	1	1	AY.14	0.000088
N	208	A208del	GCT	---	1	1	AY.16	0.00038
N	208	A208del	GCT	---	1	1	AY.16.1	0.00047
N	208	A208V	gCt	gTt	1	1	AY.16.1	0.00047
N	208	A208del	GCT	---	1	1	AY.24	0.000431
N	208	A208P	Gct	Cct	1	1	AY.25	0.000006
N	208	A208G	gCt	gGt	1	1	AY.25	0.000006
N	208	A208V	gCt	gTt	1	1	AY.29	0.000016
N	208	A208T	Gct	Act	1	1	AY.29	0.000016
N	208	A208del	GCT	---	1	1	AY.29.1	0.000221
N	208	A208G	gCt	gGt	1	1	AY.3	0.00001
N	208	A208I	GCT	ATA	1	1	AY.3	0.00001
N	208	A208N	GCt	AAt	1	1	AY.3	0.00001
N	208	A208D	gCt	gAt	1	1	AY.3	0.00001
N	208	A208del1	gCt	g-t	1	1	AY.3	0.00001
N	208	A208T	Gct	Act	1	1	AY.3	0.00001
N	208	A208V	gCt	gTt	1	1	AY.30	0.000396
N	208	A208del	GCT	---	1	1	AY.32	0.000532
N	208	A208A	gcT	gcC	1	1	AY.33	0.000067
N	208	A208V	gCt	gTt	1	1	AY.33	0.000067
N	208	A208T	Gct	Act	1	1	AY.33	0.000067
N	208	A208V	gCt	gTt	1	1	AY.34.1	0.00051
N	208	A208S	Gct	Tct	1	1	AY.35	0.000233
N	208	A208D	gCt	gAt	1	1	AY.36	0.000148
N	208	A208del	GCT	---	1	1	AY.37	0.000316
N	208	A208del	GCT	---	1	1	AY.38	0.000499
N	208	A208A	gcT	gcC	1	1	AY.39	0.000025
N	208	A208G	gCt	gGt	1	1	AY.39	0.000025
N	208	A208del	GCT	---	1	1	AY.39.1	0.00004
N	208	A208del2	GCt	--t	1	1	AY.4.2	0.000022
N	208	A208D	gCt	gAt	1	1	AY.4.2	0.000022
N	208	A208S	Gct	Tct	1	1	AY.4.2.1	0.000149
N	208	A208S	Gct	Tct	1	1	AY.4.3	0.000842
N	208	A208del	GCT	---	1	1	AY.42	0.00004
N	208	A208del2	GCt	--t	1	1	AY.42	0.00004
N	208	A208G	gCt	gGt	1	1	AY.43	0.000004
N	208	A208P	Gct	Cct	1	1	AY.44	0.000006
N	208	A208I	GCT	ATA	1	1	AY.44	0.000006
N	208	A208T	Gct	Act	1	1	AY.45	0.000122
N	208	A208del	GCT	---	1	1	AY.46.2	0.000635
N	208	A208D	gCt	gAt	1	1	AY.46.4	0.000165
N	208	A208V	gCt	gTt	1	1	AY.46.4	0.000165
N	208	A208T	Gct	Act	1	1	AY.46.5	0.000198
N	208	A208A	gcT	gcC	1	1	AY.46.5	0.000198
N	208	A208S	Gct	Tct	1	1	AY.46.5	0.000198
N	208	A208S	Gct	Tct	1	1	AY.5.3	0.000337
N	208	A208del	GCT	---	1	1	AY.5.4	0.000277
N	208	A208S	Gct	Tct	1	1	AY.53	0.000288
N	208	A208D	gCt	gAt	1	1	AY.54	0.000095
N	208	A208S	Gct	Tct	1	1	AY.56	0.001605
N	208	A208del	GCT	---	1	1	AY.57	0.000656
N	208	A208del	GCT	---	1	1	AY.6	0.000041
N	208	A208S	Gct	Tct	1	1	AY.60	0.000938
N	208	A208V	gCt	gTt	1	1	AY.60	0.000938
N	208	A208S	Gct	Tct	1	1	AY.61	0.000105
N	208	A208del	GCT	---	1	1	AY.61	0.000105
N	208	A208V	gCt	gTt	1	1	AY.62	0.000436
N	208	A208S	Gct	Tct	1	1	AY.62	0.000436
N	208	A208S	Gct	Tct	1	1	AY.64	0.000595
N	208	A208S	Gct	Tct	1	1	AY.66	0.00107
N	208	A208S	Gct	Tct	1	1	AY.68	0.000274
N	208	A208T	Gct	Act	1	1	AY.69	0.000187
N	208	A208D	gCt	gAt	1	1	AY.7	0.000196
N	208	A208A	gcT	gcC	1	1	AY.7	0.000196
N	208	A208V	gCt	gTt	1	1	AY.72	0.001361
N	208	A208del	GCT	---	1	1	AY.73	0.000665
N	208	A208S	Gct	Tct	1	1	AY.76	0.004831
N	208	A208S	Gct	Tct	1	1	AY.79	0.001211
N	208	A208del	GCT	---	1	1	AY.79	0.001211
N	208	A208S	Gct	Tct	1	1	AY.8	0.000606
N	208	A208S	Gct	Tct	1	1	AY.88	0.000884
N	208	A208del1	gcT	gc-	1	1	AY.9	0.000068
N	208	A208T	Gct	Act	1	1	AY.9	0.000068
N	208	A208A	gcT	gcC	1	1	AY.9.2	0.000037
N	208	A208T	Gct	Act	1	1	AY.9.2	0.000037
N	208	A208T	Gct	Act	1	1	AY.91	0.00073
N	208	A208A	gcT	gcC	1	1	AY.92	0.000287
N	208	A208del	GCT	---	1	1	AY.92	0.000287
N	208	A208V	gCt	gTt	1	1	AY.94	0.000443
N	208	A208S	Gct	Tct	1	1	AY.95	0.000761
N	208	A208V	gCt	gTt	1	1	AY.97	0.001701
N	208	A208S	Gct	Tct	1	1	AY.98	0.000079
N	208	A208del	GCT	---	1	1	AY.98	0.000079
N	208	A208A	gcT	gcC	1	1	AY.98	0.000079
N	208	A208V	gCt	gTt	1	1	AY.98	0.000079
N	208	A208del2	GCt	--t	1	1	AY.98.1	0.000048
N	208	A208del	GCT	---	1	1	AY.98.1	0.000048
N	208	A208V	gCt	gTt	1	1	AY.99	0.001049
N	208	A208T	Gct	Act	1	1	AY.99	0.001049
N	208	A208V	gCt	gTt	1	1	AY.99.2	0.000092
N	208	A208S	Gct	Tct	1	1	AY.99.2	0.000092
N	208	A208V	gCT	gTA	1	1	AZ.2	0.000821
N	208	A208P	Gct	Cct	1	1	AZ.2	0.000821
N	208	A208del2	gCT	g--	1	1	AZ.2	0.000821
N	208	A208T	Gct	Act	1	1	B	0.000128
N	208	A208A	gcT	gcC	1	1	B	0.000128
N	208	A208del2	gCT	g--	1	1	B.1	0.000009
N	208	A208W	GCT	TGG	1	1	B.1	0.000009
N	208	A208F	GCt	TTt	1	1	B.1	0.000009
N	208	A208del1	gcT	gc-	1	1	B.1	0.000009
N	208	A208del2	gCT	g--	1	1	B.1.1	0.000018
N	208	A208V	gCt	gTt	1	1	B.1.1.10	0.001115
N	208	A208S	Gct	Tct	1	1	B.1.1.101	0.01
N	208	A208S	Gct	Tct	1	1	B.1.1.176	0.000439
N	208	A208V	gCt	gTt	1	1	B.1.1.189	0.001513
N	208	A208S	Gct	Tct	1	1	B.1.1.210	0.005714
N	208	A208del	GCT	---	1	1	B.1.1.214	0.000055
N	208	A208S	Gct	Tct	1	1	B.1.1.216	0.00089
N	208	A208V	gCt	gTt	1	1	B.1.1.216	0.00089
N	208	A208V	gCt	gTt	1	1	B.1.1.222	0.000204
N	208	A208S	Gct	Tct	1	1	B.1.1.228	0.003049
N	208	A208del	GCT	---	1	1	B.1.1.237	0.005405
N	208	A208V	gCt	gTt	1	1	B.1.1.243	0.004082
N	208	A208del	GCT	---	1	1	B.1.1.27	0.00565
N	208	A208S	Gct	Tct	1	1	B.1.1.277	0.000759
N	208	A208V	gCt	gTt	1	1	B.1.1.289	0.002083
N	208	A208P	Gct	Cct	1	1	B.1.1.294	0.001266
N	208	A208S	Gct	Tct	1	1	B.1.1.301	0.001179
N	208	A208del	GCT	---	1	1	B.1.1.301	0.001179
N	208	A208del	GCT	---	1	1	B.1.1.303	0.002762
N	208	A208A	gcT	gcC	1	1	B.1.1.311	0.000358
N	208	A208V	gCt	gTt	1	1	B.1.1.317	0.000412
N	208	A208G	gCt	gGt	1	1	B.1.1.317	0.000412
N	208	A208del	GCT	---	1	1	B.1.1.326	0.001761
N	208	A208del	GCT	---	1	1	B.1.1.369	0.000446
N	208	A208V	gCt	gTt	1	1	B.1.1.37	0.000193
N	208	A208V	gCT	gTA	1	1	B.1.1.370	0.012658
N	208	A208A	gcT	gcC	1	1	B.1.1.371	0.010417
N	208	A208A	gcT	gcC	1	1	B.1.1.372	0.000689
N	208	A208V	gCt	gTt	1	1	B.1.1.39	0.00051
N	208	A208D	gCt	gAt	1	1	B.1.1.409	0.002833
N	208	A208V	gCt	gTt	1	1	B.1.1.409	0.002833
N	208	A208del	GCT	---	1	1	B.1.1.409	0.002833
N	208	A208del	GCT	---	1	1	B.1.1.413	0.006897
N	208	A208V	gCt	gTt	1	1	B.1.1.416	0.000905
N	208	A208S	Gct	Tct	1	1	B.1.1.433	0.001425
N	208	A208V	gCt	gTt	1	1	B.1.1.44	0.00241
N	208	A208G	gCt	gGt	1	1	B.1.1.46	0.004367
N	208	A208del	GCT	---	1	1	B.1.1.50	0.000679
N	208	A208P	Gct	Cct	1	1	B.1.1.51	0.001718
N	208	A208del	GCT	---	1	1	B.1.1.517	0.006803
N	208	A208P	Gct	Cct	1	1	B.1.1.519	0.00004
N	208	A208D	gCt	gAt	1	1	B.1.1.519	0.00004
N	208	A208V	gCt	gTt	1	1	B.1.1.524	0.020833
N	208	A208del	GCT	---	1	1	B.1.1.525	0.005464
N	208	A208S	Gct	Tct	1	1	B.1.1.53	0.013699
N	208	A208V	gCt	gTt	1	1	B.1.1.54	0.003021
N	208	A208G	gCt	gGt	1	1	B.1.1.61	0.008772
N	208	A208V	gCt	gTt	1	1	B.1.1.63	0.000386
N	208	A208V	gCt	gTt	1	1	B.1.1.72	0.030303
N	208	A208T	Gct	Act	1	1	B.1.147	0.000756
N	208	A208V	gCt	gTt	1	1	B.1.160	0.000031
N	208	A208del	GCT	---	1	1	B.1.160	0.000031
N	208	A208T	Gct	Act	1	1	B.1.160.28	0.002924
N	208	A208D	gCt	gAt	1	1	B.1.177	0.000013
N	208	A208del	GCT	---	1	1	B.1.177	0.000013
N	208	A208V	gCt	gTt	1	1	B.1.177.12	0.000152
N	208	A208V	gCt	gTt	1	1	B.1.177.4	0.000211
N	208	A208A	gcT	gcC	1	1	B.1.177.56	0.000668
N	208	A208V	gCt	gTt	1	1	B.1.177.62	0.001192
N	208	A208T	Gct	Act	1	1	B.1.177.63	0.002703
N	208	A208S	Gct	Tct	1	1	B.1.177.7	0.000165
N	208	A208del	GCT	---	1	1	B.1.177.7	0.000165
N	208	A208V	gCt	gTt	1	1	B.1.177.73	0.000566
N	208	A208V	gCt	gTt	1	1	B.1.194	0.04
N	208	A208V	gCt	gTt	1	1	B.1.2	0.000009
N	208	A208V	gCt	gTt	1	1	B.1.201	0.005682
N	208	A208S	Gct	Tct	1	1	B.1.213	0.014925
N	208	A208V	gCt	gTt	1	1	B.1.221	0.000071
N	208	A208T	Gct	Act	1	1	B.1.239	0.001221
N	208	A208S	Gct	Tct	1	1	B.1.240	0.000216
N	208	A208F	GCt	TTt	1	1	B.1.240	0.000216
N	208	A208V	gCt	gTt	1	1	B.1.240	0.000216
N	208	A208A	gcT	gcC	1	1	B.1.241	0.000812
N	208	A208S	Gct	Tct	1	1	B.1.243	0.00007
N	208	A208del2	GCt	--t	1	1	B.1.243	0.00007
N	208	A208T	Gct	Act	1	1	B.1.258	0.000067
N	208	A208T	Gct	Act	1	1	B.1.279	0.000514
N	208	A208S	Gct	Tct	1	1	B.1.279	0.000514
N	208	A208V	gCt	gTt	1	1	B.1.280	0.007143
N	208	A208S	Gct	Tct	1	1	B.1.311	0.000275
N	208	A208G	gCt	gGt	1	1	B.1.319	0.003049
N	208	A208del	GCT	---	1	1	B.1.324	0.001605
N	208	A208S	Gct	Tct	1	1	B.1.349	0.000715
N	208	A208F	GCt	TTt	1	1	B.1.351	0.00003
N	208	A208A	gcT	gcC	1	1	B.1.36	0.000146
N	208	A208T	Gct	Act	1	1	B.1.36	0.000146
N	208	A208S	Gct	Tct	1	1	B.1.36	0.000146
N	208	A208V	gCt	gTt	1	1	B.1.36.29	0.000517
N	208	A208S	Gct	Tct	1	1	B.1.367	0.000792
N	208	A208S	Gct	Tct	1	1	B.1.378	0.006849
N	208	A208del1	gcT	gc-	1	1	B.1.415	0.014286
N	208	A208del	GCT	---	1	1	B.1.427	0.00005
N	208	A208S	Gct	Tct	1	1	B.1.427	0.00005
N	208	A208S	Gct	Tct	1	1	B.1.428	0.00102
N	208	A208T	Gct	Act	1	1	B.1.429	0.000024
N	208	A208V	gCt	gTt	1	1	B.1.436	0.001029
N	208	A208del	GCT	---	1	1	B.1.465	0.003802
N	208	A208S	Gct	Tct	1	1	B.1.486	0.111111
N	208	A208del2	GCt	--t	1	1	B.1.526	0.000024
N	208	A208del	GCT	---	1	1	B.1.580	0.004065
N	208	A208V	gCt	gTt	1	1	B.1.595	0.000261
N	208	A208del	GCT	---	1	1	B.1.596	0.000087
N	208	A208V	gCt	gTt	1	1	B.1.599	0.00365
N	208	A208S	Gct	Tct	1	1	B.1.609	0.000479
N	208	A208V	gCt	gTt	1	1	B.1.621.1	0.000506
N	208	A208T	Gct	Act	1	1	B.40	0.000364
N	208	A208V	gCt	gTt	1	1	B.40	0.000364
N	208	A208S	Gct	Tct	1	1	C.14	0.004329
N	208	A208V	gCt	gTt	1	1	C.16	0.00106
N	208	A208T	GcT	AcA	1	1	C.35	0.000774
N	208	A208D	gCt	gAt	1	1	C.37	0.000116
N	208	A208G	gCt	gGt	1	1	C.37	0.000116
N	208	A208del	GCT	---	1	1	C.37.1	0.002618
N	208	A208del	GCT	---	1	1	C.38	0.008065
N	208	A208P	Gct	Cct	1	1	D.2	0.000075
N	208	A208A	gcT	gcC	1	1	D.2	0.000075
N	208	A208del	GCT	---	1	1	N.5	0.001767
N	208	A208D	gCt	gAt	1	1	P.1	0.000016
N	208	A208del	GCT	---	1	1	P.1.1	0.000318
N	208	A208T	Gct	Act	1	1	P.1.12	0.000484
N	208	A208S	Gct	Tct	1	1	P.1.13	0.000898
N	208	A208V	gCt	gTt	1	1	P.1.13	0.000898
N	208	A208del	GCT	---	1	1	P.1.15	0.000232
N	208	A208A	gcT	gcC	1	1	P.1.16	0.000374
N	208	A208T	Gct	Act	1	1	P.1.17	0.000162
N	208	A208del	GCT	---	1	1	P.1.7	0.000319
N	208	A208del	GCT	---	1	1	P.1.8	0.004785
N	208	A208V	gCt	gTt	1	1	P.1.9	0.004808
N	208	A208T	Gct	Act	1	1	P.2	0.000187
N	208	A208V	gCt	gTt	1	1	P.3	0.001595
N	208	A208D	gCt	gAt	1	1	Q.1	0.000126
N	208	A208del	GCT	---	1	1	Q.1	0.000126
N	208	A208T	Gct	Act	1	1	Q.1	0.000126
N	208	A208del	GCT	---	1	1	Q.3	0.000145
N	208	A208S	Gct	Tct	1	1	Q.3	0.000145
N	208	A208S	Gct	Tct	1	1	R.1	0.00009
N	208	A208V	gCt	gTt	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.