CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 208 | A208S | nonsyn | Gct | Tct | 29468 | 29464 | 0.999864 | 28895-28897 | |
N | 208 | A208S | nonsyn | GCT | AGC | 29468 | 2 | 0.0000678702 | 28895-28897 | |
N | 208 | A208S | nonsyn | GcT | TcC | 29468 | 1 | 0.0000339351 | 28895-28897 | |
N | 208 | A208S | nonsyn | GcT | TcG | 29468 | 1 | 0.0000339351 | 28895-28897 | |
N | 208 | A208del | del | GCT | --- | 8461 | 8461 | 1 | 28895-28897 | |
N | 208 | A208V | nonsyn | gCt | gTt | 2670 | 2665 | 0.998127 | 28895-28897 | |
N | 208 | A208V | nonsyn | gCT | gTC | 2670 | 3 | 0.0011236 | 28895-28897 | |
N | 208 | A208V | nonsyn | gCT | gTA | 2670 | 2 | 0.000749064 | 28895-28897 | |
N | 208 | A208A | syn | gcT | gcC | 1096 | 1060 | 0.967153 | 28895-28897 | |
N | 208 | A208A | syn | gcT | gcA | 1096 | 29 | 0.0264599 | 28895-28897 | |
N | 208 | A208A | syn | gcT | gcG | 1096 | 7 | 0.00638686 | 28895-28897 | |
N | 208 | A208G | nonsyn | gCt | gGt | 671 | 668 | 0.995529 | 28895-28897 | |
N | 208 | A208G | nonsyn | gCT | gGC | 671 | 2 | 0.00298063 | 28895-28897 | |
N | 208 | A208G | nonsyn | gCT | gGG | 671 | 1 | 0.00149031 | 28895-28897 | |
N | 208 | A208T | nonsyn | Gct | Act | 240 | 239 | 0.995833 | 28895-28897 | |
N | 208 | A208T | nonsyn | GcT | AcA | 240 | 1 | 0.00416667 | 28895-28897 | |
N | 208 | A208P | nonsyn | Gct | Cct | 228 | 228 | 1 | 28895-28897 | |
N | 208 | A208D | nonsyn | gCt | gAt | 124 | 124 | 1 | 28895-28897 | |
N | 208 | A208del2 | del | gCT | g-- | 36 | 31 | 0.861111 | 28895-28897 | |
N | 208 | A208del2 | del | GCt | --t | 36 | 5 | 0.138889 | 28895-28897 | |
N | 208 | A208F | nonsyn | GCt | TTt | 8 | 8 | 1 | 28895-28897 | |
N | 208 | A208del1 | del | gcT | gc- | 4 | 3 | 0.75 | 28895-28897 | |
N | 208 | A208del1 | del | gCt | g-t | 4 | 1 | 0.25 | 28895-28897 | |
N | 208 | A208I | nonsyn | GCT | ATA | 3 | 3 | 1 | 28895-28897 | |
N | 208 | A208C | nonsyn | GCt | TGt | 3 | 2 | 0.666667 | 28895-28897 | |
N | 208 | A208C | nonsyn | GCT | TGC | 3 | 1 | 0.333333 | 28895-28897 | |
N | 208 | A208W | nonsyn | GCT | TGG | 1 | 1 | 1 | 28895-28897 | |
N | 208 | A208N | nonsyn | GCt | AAt | 1 | 1 | 1 | 28895-28897 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 208 | A208S | Gct | Tct | 29464 | 29468 | All | 0.005635 |
N | 208 | A208S | GCT | AGC | 2 | 29468 | All | 0 |
N | 208 | A208S | GcT | TcC | 1 | 29468 | All | 0 |
N | 208 | A208S | GcT | TcG | 1 | 29468 | All | 0 |
N | 208 | A208S | Gct | Tct | 24590 | 24590 | AY.103 | 0.152681 |
N | 208 | A208del | GCT | --- | 8461 | 8461 | All | 0.001618 |
N | 208 | A208del | GCT | --- | 3106 | 3106 | B.1.1.318 | 0.937236 |
N | 208 | A208V | gCt | gTt | 2665 | 2670 | All | 0.00051 |
N | 208 | A208V | gCT | gTC | 3 | 2670 | All | 0.000001 |
N | 208 | A208V | gCT | gTA | 2 | 2670 | All | 0 |
N | 208 | A208S | Gct | Tct | 1532 | 1533 | B.1.617.2 | 0.005769 |
N | 208 | A208S | GCT | AGC | 1 | 1533 | B.1.617.2 | 0.000004 |
N | 208 | A208V | gCt | gTt | 1450 | 1453 | B.1.1.7 | 0.001298 |
N | 208 | A208V | gCT | gTC | 3 | 1453 | B.1.1.7 | 0.000003 |
N | 208 | A208del | GCT | --- | 1186 | 1186 | AZ.2 | 0.973727 |
N | 208 | A208del | GCT | --- | 1153 | 1153 | AZ.1 | 1 |
N | 208 | A208A | gcT | gcC | 1060 | 1096 | All | 0.000203 |
N | 208 | A208A | gcT | gcA | 29 | 1096 | All | 0.000006 |
N | 208 | A208A | gcT | gcG | 7 | 1096 | All | 0.000001 |
N | 208 | A208S | Gct | Tct | 689 | 689 | B.1.1.7 | 0.000617 |
N | 208 | A208G | gCt | gGt | 668 | 671 | All | 0.000128 |
N | 208 | A208G | gCT | gGC | 2 | 671 | All | 0 |
N | 208 | A208G | gCT | gGG | 1 | 671 | All | 0 |
N | 208 | A208del | GCT | --- | 621 | 621 | AZ.3 | 0.943769 |
N | 208 | A208del | GCT | --- | 589 | 589 | B.1.1.7 | 0.000527 |
N | 208 | A208A | gcT | gcC | 545 | 545 | B.1.1.153 | 0.596933 |
N | 208 | A208G | gCt | gGt | 463 | 463 | A.3 | 0.97065 |
N | 208 | A208S | Gct | Tct | 329 | 329 | P.1 | 0.005183 |
N | 208 | A208A | gcT | gcC | 323 | 326 | AY.21 | 0.612903 |
N | 208 | A208A | gcT | gcG | 3 | 326 | AY.21 | 0.005693 |
N | 208 | A208S | Gct | Tct | 284 | 284 | AY.9.1 | 0.023778 |
N | 208 | A208del | GCT | --- | 279 | 279 | AZ.4 | 0.936242 |
N | 208 | A208del | GCT | --- | 274 | 274 | AZ.5 | 0.961404 |
N | 208 | A208S | Gct | Tct | 271 | 271 | AY.4 | 0.000422 |
N | 208 | A208T | Gct | Act | 239 | 240 | All | 0.000046 |
N | 208 | A208T | GcT | AcA | 1 | 240 | All | 0 |
N | 208 | A208P | Gct | Cct | 228 | 228 | All | 0.000044 |
N | 208 | A208S | Gct | Tct | 194 | 194 | AY.43 | 0.00086 |
N | 208 | A208D | gCt | gAt | 124 | 124 | All | 0.000024 |
N | 208 | A208V | gCt | gTt | 123 | 123 | AY.4 | 0.000191 |
N | 208 | A208del | GCT | --- | 121 | 121 | AZ.2.1 | 0.98374 |
N | 208 | A208V | gCt | gTt | 121 | 121 | B.1.617.2 | 0.000456 |
N | 208 | A208V | gCt | gTt | 118 | 118 | AY.74 | 0.013646 |
N | 208 | A208del | GCT | --- | 118 | 118 | AZ.6 | 0.991597 |
N | 208 | A208P | Gct | Cct | 117 | 117 | B.1.617.2 | 0.000441 |
N | 208 | A208S | Gct | Tct | 110 | 110 | AY.46.6 | 0.007943 |
N | 208 | A208S | Gct | Tct | 108 | 108 | AY.29 | 0.001704 |
N | 208 | A208S | Gct | Tct | 106 | 106 | AY.102 | 0.00281 |
N | 208 | A208G | gCt | gGt | 86 | 86 | AY.4 | 0.000134 |
N | 208 | A208del | GCT | --- | 74 | 74 | B.1.1 | 0.001342 |
N | 208 | A208T | Gct | Act | 72 | 72 | B.1.1.7 | 0.000064 |
N | 208 | A208V | gCt | gTt | 71 | 71 | B.1.427 | 0.003585 |
N | 208 | A208V | gCt | gTt | 69 | 69 | AY.103 | 0.000428 |
N | 208 | A208G | gCt | gGt | 68 | 68 | B.1.1.7 | 0.000061 |
N | 208 | A208del | GCT | --- | 68 | 68 | B.1.617.2 | 0.000256 |
N | 208 | A208V | gCt | gTt | 67 | 67 | B.1.311 | 0.018396 |
N | 208 | A208S | Gct | Tct | 65 | 65 | AY.25 | 0.000391 |
N | 208 | A208P | Gct | Cct | 62 | 62 | AY.100 | 0.002852 |
N | 208 | A208V | gCt | gTt | 62 | 62 | B.1.221.3 | 0.051667 |
N | 208 | A208S | Gct | Tct | 54 | 56 | B.1 | 0.000495 |
N | 208 | A208S | GcT | TcC | 1 | 56 | B.1 | 0.000009 |
N | 208 | A208S | GcT | TcG | 1 | 56 | B.1 | 0.000009 |
N | 208 | A208S | Gct | Tct | 55 | 55 | AY.44 | 0.000335 |
N | 208 | A208del | GCT | --- | 51 | 51 | AY.4 | 0.000079 |
N | 208 | A208del | GCT | --- | 48 | 48 | AY.103 | 0.000298 |
N | 208 | A208V | gCt | gTt | 47 | 47 | AY.5 | 0.000971 |
N | 208 | A208D | gCt | gAt | 47 | 47 | B.1.1.7 | 0.000042 |
N | 208 | A208del | GCT | --- | 46 | 46 | AY.118 | 0.002882 |
N | 208 | A208del | GCT | --- | 46 | 46 | AY.74 | 0.00532 |
N | 208 | A208S | Gct | Tct | 44 | 44 | AY.3 | 0.000438 |
N | 208 | A208del | GCT | --- | 44 | 44 | B.1 | 0.000403 |
N | 208 | A208A | gcT | gcC | 42 | 44 | B.1.1.7 | 0.000038 |
N | 208 | A208A | gcT | gcA | 1 | 44 | B.1.1.7 | 0.000001 |
N | 208 | A208A | gcT | gcG | 1 | 44 | B.1.1.7 | 0.000001 |
N | 208 | A208V | gCt | gTt | 43 | 43 | P.1 | 0.000677 |
N | 208 | A208S | Gct | Tct | 42 | 42 | AY.108 | 0.046307 |
N | 208 | A208S | Gct | Tct | 42 | 42 | AY.111 | 0.007692 |
N | 208 | A208S | Gct | Tct | 42 | 42 | AY.39 | 0.001038 |
N | 208 | A208S | Gct | Tct | 42 | 42 | B.1.2 | 0.00037 |
N | 208 | A208del | GCT | --- | 39 | 39 | AY.25 | 0.000235 |
N | 208 | A208S | Gct | Tct | 37 | 37 | AY.20 | 0.001438 |
N | 208 | A208del2 | gCT | g-- | 31 | 36 | All | 0.000006 |
N | 208 | A208del2 | GCt | --t | 5 | 36 | All | 0.000001 |
N | 208 | A208D | gCt | gAt | 36 | 36 | AY.43 | 0.000159 |
N | 208 | A208del | GCT | --- | 34 | 34 | B.1.1.93 | 0.871795 |
N | 208 | A208V | gCt | gTt | 32 | 32 | B.1.1 | 0.000581 |
N | 208 | A208del | GCT | --- | 31 | 31 | AY.43 | 0.000137 |
N | 208 | A208S | Gct | Tct | 31 | 31 | P.1.17 | 0.005015 |
N | 208 | A208V | gCt | gTt | 30 | 30 | AY.3.1 | 0.002558 |
N | 208 | A208del | GCT | --- | 30 | 30 | B.1.1.370 | 0.379747 |
N | 208 | A208S | Gct | Tct | 29 | 29 | AY.42 | 0.001167 |
N | 208 | A208del | GCT | --- | 28 | 28 | AY.44 | 0.00017 |
N | 208 | A208del | GCT | --- | 27 | 27 | AY.3 | 0.000269 |
N | 208 | A208S | Gct | Tct | 27 | 27 | P.1.12 | 0.013069 |
N | 208 | A208S | Gct | Tct | 27 | 27 | P.1.14 | 0.001291 |
N | 208 | A208del | GCT | --- | 26 | 26 | AY.100 | 0.001196 |
N | 208 | A208S | Gct | Tct | 26 | 26 | AY.119 | 0.000918 |
N | 208 | A208S | Gct | Tct | 26 | 26 | P.1.15 | 0.006041 |
N | 208 | A208del2 | gCT | g-- | 25 | 25 | B.1.1.318 | 0.007544 |
N | 208 | A208S | Gct | Tct | 24 | 24 | AY.117 | 0.002028 |
N | 208 | A208A | gcT | gcC | 22 | 24 | AY.4 | 0.000034 |
N | 208 | A208A | gcT | gcA | 2 | 24 | AY.4 | 0.000003 |
N | 208 | A208V | gCt | gTt | 23 | 23 | AY.26 | 0.000651 |
N | 208 | A208S | Gct | Tct | 23 | 23 | B.1.526 | 0.000541 |
N | 208 | A208del | GCT | --- | 23 | 23 | Q.2 | 0.01411 |
N | 208 | A208V | gCt | gTt | 22 | 22 | AY.25 | 0.000132 |
N | 208 | A208V | gCt | gTt | 21 | 21 | AY.3 | 0.000209 |
N | 208 | A208T | Gct | Act | 21 | 21 | AY.4 | 0.000033 |
N | 208 | A208V | gCt | gTt | 21 | 21 | AY.43 | 0.000093 |
N | 208 | A208V | gCt | gTt | 21 | 21 | AY.44 | 0.000128 |
N | 208 | A208S | Gct | Tct | 21 | 21 | B.1.1 | 0.000381 |
N | 208 | A208del | GCT | --- | 21 | 21 | B.1.1.222 | 0.004284 |
N | 208 | A208A | gcT | gcC | 21 | 21 | B.1.2 | 0.000185 |
N | 208 | A208del | GCT | --- | 20 | 20 | AY.4.2.1 | 0.00298 |
N | 208 | A208S | Gct | Tct | 20 | 20 | B.1.177 | 0.000263 |
N | 208 | A208G | gCt | gGt | 19 | 19 | AY.42 | 0.000764 |
N | 208 | A208S | Gct | Tct | 19 | 19 | AY.5 | 0.000392 |
N | 208 | A208S | Gct | Tct | 19 | 19 | B.1.429 | 0.000447 |
N | 208 | A208V | gCt | gTt | 18 | 18 | AY.102 | 0.000477 |
N | 208 | A208del | GCT | --- | 18 | 18 | AY.52 | 0.014658 |
N | 208 | A208S | Gct | Tct | 18 | 18 | P.1.10 | 0.00485 |
N | 208 | A208S | Gct | Tct | 17 | 17 | B.1.1.397 | 0.038288 |
N | 208 | A208S | Gct | Tct | 17 | 17 | B.1.232 | 0.009135 |
N | 208 | A208S | Gct | Tct | 16 | 16 | AY.26 | 0.000453 |
N | 208 | A208S | Gct | Tct | 16 | 16 | AY.45 | 0.001947 |
N | 208 | A208V | gCt | gTt | 16 | 16 | B.1 | 0.000147 |
N | 208 | A208S | Gct | Tct | 15 | 15 | AY.113 | 0.002136 |
N | 208 | A208T | Gct | Act | 14 | 14 | AY.25 | 0.000084 |
N | 208 | A208A | gcT | gcC | 12 | 14 | B.1 | 0.00011 |
N | 208 | A208A | gcT | gcG | 2 | 14 | B.1 | 0.000018 |
N | 208 | A208A | gcT | gcA | 14 | 14 | B.1.177.60 | 0.003058 |
N | 208 | A208T | Gct | Act | 14 | 14 | P.1 | 0.000221 |
N | 208 | A208T | Gct | Act | 13 | 13 | AY.20 | 0.000505 |
N | 208 | A208T | Gct | Act | 13 | 13 | AY.43 | 0.000058 |
N | 208 | A208S | Gct | Tct | 13 | 13 | AY.46.2 | 0.008259 |
N | 208 | A208del | GCT | --- | 13 | 13 | AY.47 | 0.000404 |
N | 208 | A208del | GCT | --- | 13 | 13 | AY.99.2 | 0.001198 |
N | 208 | A208V | gCt | gTt | 13 | 13 | B.1.1.214 | 0.000721 |
N | 208 | A208S | Gct | Tct | 13 | 13 | B.1.1.456 | 0.722222 |
N | 208 | A208del | GCT | --- | 13 | 13 | B.1.1.519 | 0.000516 |
N | 208 | A208T | Gct | Act | 13 | 13 | B.1.213 | 0.19403 |
N | 208 | A208G | gCt | gGt | 10 | 12 | B.1 | 0.000092 |
N | 208 | A208G | gCT | gGC | 1 | 12 | B.1 | 0.000009 |
N | 208 | A208G | gCT | gGG | 1 | 12 | B.1 | 0.000009 |
N | 208 | A208S | Gct | Tct | 12 | 12 | B.1.177.67 | 0.091603 |
N | 208 | A208A | gcT | gcC | 12 | 12 | R.1 | 0.00108 |
N | 208 | A208V | gCt | gTt | 11 | 11 | AY.5.4 | 0.003044 |
N | 208 | A208A | gcT | gcC | 10 | 11 | B.1.1 | 0.000181 |
N | 208 | A208A | gcT | gcA | 1 | 11 | B.1.1 | 0.000018 |
N | 208 | A208P | Gct | Cct | 11 | 11 | B.1.1.318 | 0.003319 |
N | 208 | A208S | Gct | Tct | 11 | 11 | B.1.1.519 | 0.000437 |
N | 208 | A208S | Gct | Tct | 10 | 10 | AY.116 | 0.002868 |
N | 208 | A208del | GCT | --- | 10 | 10 | AY.23 | 0.000697 |
N | 208 | A208del | GCT | --- | 10 | 10 | B.1.214 | 0.03663 |
N | 208 | A208V | gCt | gTt | 10 | 10 | B.1.596 | 0.000871 |
N | 208 | A208A | gcT | gcC | 10 | 10 | B.1.617.2 | 0.000038 |
N | 208 | A208del | GCT | --- | 9 | 9 | AY.26 | 0.000255 |
N | 208 | A208S | Gct | Tct | 9 | 9 | AY.34 | 0.000873 |
N | 208 | A208A | gcT | gcC | 9 | 9 | AY.4.2 | 0.000195 |
N | 208 | A208del | GCT | --- | 9 | 9 | AY.45 | 0.001095 |
N | 208 | A208S | Gct | Tct | 9 | 9 | AY.46 | 0.000937 |
N | 208 | A208S | Gct | Tct | 9 | 9 | AY.47 | 0.00028 |
N | 208 | A208V | gCt | gTt | 9 | 9 | P.1.17 | 0.001456 |
N | 208 | A208S | Gct | Tct | 9 | 9 | P.2 | 0.00168 |
N | 208 | A208F | GCt | TTt | 8 | 8 | All | 0.000002 |
N | 208 | A208del | GCT | --- | 8 | 8 | AT.1 | 0.041026 |
N | 208 | A208S | Gct | Tct | 8 | 8 | AY.100 | 0.000368 |
N | 208 | A208S | Gct | Tct | 8 | 8 | AY.118 | 0.000501 |
N | 208 | A208S | Gct | Tct | 8 | 8 | AY.14 | 0.000704 |
N | 208 | A208del | GCT | --- | 8 | 8 | AY.21 | 0.01518 |
N | 208 | A208S | Gct | Tct | 8 | 8 | AY.24 | 0.003448 |
N | 208 | A208D | gCt | gAt | 8 | 8 | AY.44 | 0.000049 |
N | 208 | A208V | gCt | gTt | 8 | 8 | AY.47 | 0.000249 |
N | 208 | A208S | Gct | Tct | 8 | 8 | AY.75 | 0.000448 |
N | 208 | A208P | Gct | Cct | 8 | 8 | B.1.1.311 | 0.002865 |
N | 208 | A208V | gCt | gTt | 8 | 8 | B.1.1.519 | 0.000318 |
N | 208 | A208del | GCT | --- | 8 | 8 | D.2 | 0.0006 |
N | 208 | A208S | Gct | Tct | 8 | 8 | D.2 | 0.0006 |
N | 208 | A208S | Gct | Tct | 7 | 7 | AY.120 | 0.00026 |
N | 208 | A208S | Gct | Tct | 7 | 7 | AY.33 | 0.000467 |
N | 208 | A208S | Gct | Tct | 7 | 7 | AY.36 | 0.001037 |
N | 208 | A208S | Gct | Tct | 7 | 7 | AY.4.2 | 0.000152 |
N | 208 | A208P | Gct | Cct | 7 | 7 | AZ.3 | 0.010638 |
N | 208 | A208S | Gct | Tct | 6 | 7 | B.1.617.1 | 0.000774 |
N | 208 | A208S | GCT | AGC | 1 | 7 | B.1.617.1 | 0.000129 |
N | 208 | A208S | Gct | Tct | 7 | 7 | P.1.7 | 0.002235 |
N | 208 | A208V | gCt | gTt | 7 | 7 | Q.1 | 0.000884 |
N | 208 | A208del | GCT | --- | 7 | 7 | Q.8 | 0.001154 |
N | 208 | A208T | Gct | Act | 6 | 6 | AY.103 | 0.000037 |
N | 208 | A208del | GCT | --- | 6 | 6 | AY.119 | 0.000212 |
N | 208 | A208V | gCt | gTt | 6 | 6 | AY.27 | 0.000388 |
N | 208 | A208S | Gct | Tct | 6 | 6 | AY.39.1 | 0.000238 |
N | 208 | A208P | Gct | Cct | 6 | 6 | AY.4.5 | 0.000645 |
N | 208 | A208del | GCT | --- | 6 | 6 | AY.75 | 0.000336 |
N | 208 | A208del | GCT | --- | 6 | 6 | AY.85 | 0.002563 |
N | 208 | A208S | Gct | Tct | 6 | 6 | AY.9.2 | 0.00022 |
N | 208 | A208S | Gct | Tct | 6 | 6 | AY.99 | 0.006296 |
N | 208 | A208A | gcT | gcC | 6 | 6 | B.1.1.329 | 0.023077 |
N | 208 | A208V | gCt | gTt | 6 | 6 | B.1.177 | 0.000079 |
N | 208 | A208S | Gct | Tct | 6 | 6 | B.1.221 | 0.000426 |
N | 208 | A208del | GCT | --- | 6 | 6 | P.1 | 0.000095 |
N | 208 | A208S | Gct | Tct | 6 | 6 | P.1.16 | 0.002245 |
N | 208 | A208V | gCt | gTt | 6 | 6 | Q.3 | 0.00087 |
N | 208 | A208del | GCT | --- | 5 | 5 | AY.102 | 0.000133 |
N | 208 | A208F | GCt | TTt | 5 | 5 | AY.103 | 0.000031 |
N | 208 | A208del | GCT | --- | 5 | 5 | AY.27 | 0.000324 |
N | 208 | A208del | GCT | --- | 5 | 5 | AY.29 | 0.000079 |
N | 208 | A208S | Gct | Tct | 5 | 5 | AY.32 | 0.002662 |
N | 208 | A208D | gCt | gAt | 5 | 5 | AY.4 | 0.000008 |
N | 208 | A208V | gCt | gTt | 5 | 5 | AY.4.5 | 0.000537 |
N | 208 | A208T | Gct | Act | 5 | 5 | AY.44 | 0.00003 |
N | 208 | A208S | Gct | Tct | 5 | 5 | AY.48 | 0.002326 |
N | 208 | A208V | gCt | gTt | 5 | 5 | AY.61 | 0.000524 |
N | 208 | A208S | Gct | Tct | 5 | 5 | AY.65 | 0.002665 |
N | 208 | A208S | Gct | Tct | 5 | 5 | AY.98.1 | 0.000242 |
N | 208 | A208V | gCt | gTt | 5 | 5 | B.1.1.28 | 0.001556 |
N | 208 | A208S | Gct | Tct | 5 | 5 | B.1.1.317 | 0.002058 |
N | 208 | A208V | gCt | gTt | 5 | 5 | B.1.234 | 0.00066 |
N | 208 | A208T | Gct | Act | 5 | 5 | B.1.258.14 | 0.004902 |
N | 208 | A208del | GCT | --- | 5 | 5 | B.1.349 | 0.003574 |
N | 208 | A208S | Gct | Tct | 5 | 5 | B.1.565 | 0.004052 |
N | 208 | A208del | GCT | --- | 5 | 5 | B.1.617.1 | 0.000645 |
N | 208 | A208S | Gct | Tct | 5 | 5 | B.1.628 | 0.001762 |
N | 208 | A208S | Gct | Tct | 5 | 5 | C.37 | 0.00058 |
N | 208 | A208S | Gct | Tct | 5 | 5 | P.1.1 | 0.001588 |
N | 208 | A208V | gCt | gTt | 5 | 5 | P.1.14 | 0.000239 |
N | 208 | A208V | gCt | gTt | 5 | 5 | Q.8 | 0.000825 |
N | 208 | A208V | gCt | gTt | 4 | 4 | A | 0.001548 |
N | 208 | A208V | gCt | gTt | 4 | 4 | A.23.1 | 0.002817 |
N | 208 | A208del1 | gcT | gc- | 3 | 4 | All | 0.000001 |
N | 208 | A208del1 | gCt | g-t | 1 | 4 | All | 0 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.101 | 0.001962 |
N | 208 | A208D | gCt | gAt | 4 | 4 | AY.103 | 0.000025 |
N | 208 | A208T | Gct | Act | 4 | 4 | AY.116 | 0.001147 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.120 | 0.000149 |
N | 208 | A208S | Gct | Tct | 4 | 4 | AY.121 | 0.000541 |
N | 208 | A208V | gCt | gTt | 4 | 4 | AY.14 | 0.000352 |
N | 208 | A208V | gCt | gTt | 4 | 4 | AY.23 | 0.000279 |
N | 208 | A208V | gCt | gTt | 4 | 4 | AY.24 | 0.001724 |
N | 208 | A208S | Gct | Tct | 4 | 4 | AY.3.1 | 0.000341 |
N | 208 | A208V | gCt | gTt | 4 | 4 | AY.36 | 0.000593 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.39 | 0.000099 |
N | 208 | A208V | gCt | gTt | 4 | 4 | AY.39 | 0.000099 |
N | 208 | A208V | gCt | gTt | 4 | 4 | AY.4.2 | 0.000087 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.4.2 | 0.000087 |
N | 208 | A208V | gCt | gTt | 4 | 4 | AY.57 | 0.002625 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.59 | 0.002119 |
N | 208 | A208T | Gct | Act | 4 | 4 | AY.6 | 0.000165 |
N | 208 | A208S | Gct | Tct | 4 | 4 | AY.63 | 0.001547 |
N | 208 | A208V | gCt | gTt | 4 | 4 | AY.7.1 | 0.000451 |
N | 208 | A208S | Gct | Tct | 4 | 4 | AY.7.2 | 0.002237 |
N | 208 | A208S | Gct | Tct | 4 | 4 | AY.75.1 | 0.000721 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.9.1 | 0.000335 |
N | 208 | A208T | Gct | Act | 4 | 4 | B.1 | 0.000037 |
N | 208 | A208S | Gct | Tct | 4 | 4 | B.1.1.222 | 0.000816 |
N | 208 | A208del | GCT | --- | 4 | 4 | B.1.1.232 | 0.00726 |
N | 208 | A208S | Gct | Tct | 4 | 4 | B.1.1.389 | 0.024242 |
N | 208 | A208A | gcT | gcC | 4 | 4 | B.1.110.3 | 0.002874 |
N | 208 | A208T | Gct | Act | 4 | 4 | B.1.177 | 0.000053 |
N | 208 | A208S | Gct | Tct | 4 | 4 | B.1.177.21 | 0.000306 |
N | 208 | A208V | gCt | gTt | 4 | 4 | B.1.232 | 0.002149 |
N | 208 | A208del | GCT | --- | 4 | 4 | B.1.243 | 0.000278 |
N | 208 | A208T | Gct | Act | 4 | 4 | B.1.3 | 0.010471 |
N | 208 | A208del | GCT | --- | 4 | 4 | B.1.526 | 0.000094 |
N | 208 | A208del | GCT | --- | 4 | 4 | B.1.576 | 0.003626 |
N | 208 | A208T | Gct | Act | 4 | 4 | B.1.617.2 | 0.000015 |
N | 208 | A208V | gCt | gTt | 4 | 4 | C.37 | 0.000464 |
N | 208 | A208V | gCt | gTt | 4 | 4 | P.1.7 | 0.001277 |
N | 208 | A208V | gCt | gTt | 3 | 3 | A.2.5 | 0.001497 |
N | 208 | A208V | gCt | gTt | 3 | 3 | AD.2 | 0.000657 |
N | 208 | A208I | GCT | ATA | 3 | 3 | All | 0.000001 |
N | 208 | A208C | GCt | TGt | 2 | 3 | All | 0 |
N | 208 | A208C | GCT | TGC | 1 | 3 | All | 0 |
N | 208 | A208T | Gct | Act | 3 | 3 | AY.1 | 0.001187 |
N | 208 | A208V | gCt | gTt | 3 | 3 | AY.100 | 0.000138 |
N | 208 | A208A | gcT | gcC | 3 | 3 | AY.103 | 0.000019 |
N | 208 | A208S | Gct | Tct | 3 | 3 | AY.106 | 0.001005 |
N | 208 | A208S | Gct | Tct | 3 | 3 | AY.107 | 0.001398 |
N | 208 | A208S | Gct | Tct | 3 | 3 | AY.114 | 0.000693 |
N | 208 | A208S | Gct | Tct | 3 | 3 | AY.116.1 | 0.000934 |
N | 208 | A208S | Gct | Tct | 3 | 3 | AY.16 | 0.001139 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.20 | 0.000117 |
N | 208 | A208D | gCt | gAt | 3 | 3 | AY.25 | 0.000018 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.30 | 0.001187 |
N | 208 | A208V | gCt | gTt | 3 | 3 | AY.32 | 0.001597 |
N | 208 | A208A | gcT | gcA | 3 | 3 | AY.32 | 0.001597 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.36 | 0.000445 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
N | 208 | A208A | gcT | gcC | 3 | 3 | AY.44 | 0.000018 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.46 | 0.000312 |
N | 208 | A208S | Gct | Tct | 3 | 3 | AY.46.4 | 0.000494 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.5 | 0.000062 |
N | 208 | A208V | gCt | gTt | 3 | 3 | AY.52 | 0.002443 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.63 | 0.001161 |
N | 208 | A208S | Gct | Tct | 3 | 3 | AY.72 | 0.004082 |
N | 208 | A208V | gCt | gTt | 3 | 3 | AY.9.1 | 0.000251 |
N | 208 | A208V | gCt | gTt | 3 | 3 | AY.98.1 | 0.000145 |
N | 208 | A208del | GCT | --- | 3 | 3 | B | 0.000383 |
N | 208 | A208D | gCt | gAt | 3 | 3 | B.1 | 0.000027 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.1.1 | 0.00098 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.1.170 | 0.003741 |
N | 208 | A208S | Gct | Tct | 3 | 3 | B.1.1.241 | 0.006211 |
N | 208 | A208S | Gct | Tct | 3 | 3 | B.1.1.311 | 0.001074 |
N | 208 | A208V | gCt | gTt | 3 | 3 | B.1.1.429 | 0.013825 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.1.434 | 0.001046 |
N | 208 | A208del2 | gCT | g-- | 3 | 3 | B.1.1.7 | 0.000003 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.1.70 | 0.001023 |
N | 208 | A208A | gcT | gcC | 3 | 3 | B.1.177 | 0.00004 |
N | 208 | A208S | Gct | Tct | 3 | 3 | B.1.177.4 | 0.000633 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.2 | 0.000026 |
N | 208 | A208V | gCt | gTt | 3 | 3 | B.1.351 | 0.000089 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.36 | 0.000438 |
N | 208 | A208V | gCt | gTt | 3 | 3 | B.1.617.1 | 0.000387 |
N | 208 | A208G | gCt | gGt | 3 | 3 | B.1.617.2 | 0.000011 |
N | 208 | A208V | gCt | gTt | 3 | 3 | C.3 | 0.022901 |
N | 208 | A208S | Gct | Tct | 3 | 3 | C.36 | 0.002732 |
N | 208 | A208del | GCT | --- | 3 | 3 | C.37 | 0.000348 |
N | 208 | A208A | gcT | gcA | 3 | 3 | P.1.14 | 0.000143 |
N | 208 | A208del | GCT | --- | 3 | 3 | P.1.14 | 0.000143 |
N | 208 | A208V | gCt | gTt | 3 | 3 | P.1.15 | 0.000697 |
N | 208 | A208S | Gct | Tct | 3 | 3 | P.1.2 | 0.003468 |
N | 208 | A208del | GCT | --- | 3 | 3 | P.2 | 0.00056 |
N | 208 | A208S | Gct | Tct | 3 | 3 | P.3 | 0.004785 |
N | 208 | A208A | gcT | gcC | 2 | 2 | 0.111111 | |
N | 208 | A208G | gCt | gGt | 2 | 2 | A | 0.000774 |
N | 208 | A208G | gCt | gGt | 2 | 2 | A.1 | 0.000564 |
N | 208 | A208V | gCt | gTt | 2 | 2 | A.1 | 0.000564 |
N | 208 | A208A | gcT | gcC | 2 | 2 | AY.10 | 0.00106 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.101 | 0.000981 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.110 | 0.000225 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.110 | 0.000225 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.113 | 0.000285 |
N | 208 | A208P | Gct | Cct | 2 | 2 | AY.117 | 0.000169 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.117 | 0.000169 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.117 | 0.000169 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.119 | 0.000071 |
N | 208 | A208A | gcT | gcC | 2 | 2 | AY.120 | 0.000074 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.120.1 | 0.000642 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.121 | 0.000271 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.20 | 0.000078 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.23 | 0.000139 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.29.1 | 0.000441 |
N | 208 | A208A | gcT | gcA | 1 | 2 | AY.3 | 0.00001 |
N | 208 | A208A | gcT | gcC | 1 | 2 | AY.3 | 0.00001 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.33 | 0.000134 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.34 | 0.000194 |
N | 208 | A208P | Gct | Cct | 2 | 2 | AY.4 | 0.000003 |
N | 208 | A208T | Gct | Act | 2 | 2 | AY.4.2 | 0.000043 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.40 | 0.001929 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.42 | 0.00008 |
N | 208 | A208A | gcT | gcC | 2 | 2 | AY.42 | 0.00008 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.45 | 0.000243 |
N | 208 | A208A | gcT | gcA | 1 | 2 | AY.46 | 0.000104 |
N | 208 | A208A | gcT | gcC | 1 | 2 | AY.46 | 0.000104 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.5.4 | 0.000553 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.50 | 0.001599 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.54 | 0.000191 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.54 | 0.000191 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.7.1 | 0.000225 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.7.2 | 0.001119 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.70 | 0.000417 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.74 | 0.000231 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.82 | 0.002714 |
N | 208 | A208D | gCt | gAt | 2 | 2 | AY.9 | 0.000135 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.9.2 | 0.000073 |
N | 208 | A208V | gCt | gTt | 2 | 2 | AY.9.2 | 0.000073 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.92 | 0.000575 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.93 | 0.000546 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.94 | 0.000885 |
N | 208 | A208S | Gct | Tct | 2 | 2 | AY.97 | 0.003401 |
N | 208 | A208D | gCt | gAt | 2 | 2 | AY.98.1 | 0.000097 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B | 0.000256 |
N | 208 | A208G | gCt | gGt | 2 | 2 | B | 0.000256 |
N | 208 | A208C | GCt | TGt | 1 | 2 | B.1 | 0.000009 |
N | 208 | A208C | GCT | TGC | 1 | 2 | B.1 | 0.000009 |
N | 208 | A208T | Gct | Act | 2 | 2 | B.1.1 | 0.000036 |
N | 208 | A208P | Gct | Cct | 2 | 2 | B.1.1 | 0.000036 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.1.1 | 0.000653 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.142 | 0.035088 |
N | 208 | A208V | gCt | gTt | 2 | 2 | B.1.1.261 | 0.017241 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.1.28 | 0.000622 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.291 | 0.001485 |
N | 208 | A208A | gcT | gcA | 2 | 2 | B.1.1.306 | 0.000877 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.307 | 0.005063 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.312 | 0.003824 |
N | 208 | A208G | gCt | gGt | 1 | 2 | B.1.1.318 | 0.000302 |
N | 208 | A208G | gCT | gGC | 1 | 2 | B.1.1.318 | 0.000302 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.1.33 | 0.000842 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.33 | 0.000842 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.416 | 0.00181 |
N | 208 | A208A | gcT | gcC | 2 | 2 | B.1.1.44 | 0.004819 |
N | 208 | A208A | gcT | gcC | 2 | 2 | B.1.1.519 | 0.000079 |
N | 208 | A208V | gCt | gTt | 2 | 2 | B.1.1.52 | 0.02439 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.1.526 | 0.007092 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.1.528 | 0.009615 |
N | 208 | A208P | Gct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.1.70 | 0.000682 |
N | 208 | A208V | gCt | gTt | 2 | 2 | B.1.1.83 | 0.00542 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.112 | 0.010363 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.177.82 | 0.000955 |
N | 208 | A208T | Gct | Act | 2 | 2 | B.1.2 | 0.000018 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.336 | 0.004878 |
N | 208 | A208V | gCt | gTt | 2 | 2 | B.1.349 | 0.00143 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.351 | 0.000059 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.416.1 | 0.003125 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.517 | 0.000854 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.525 | 0.000226 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.525 | 0.000226 |
N | 208 | A208G | gCt | gGt | 2 | 2 | B.1.526 | 0.000047 |
N | 208 | A208S | Gct | Tct | 2 | 2 | B.1.582 | 0.000981 |
N | 208 | A208D | gCt | gAt | 2 | 2 | B.1.617.2 | 0.000008 |
N | 208 | A208A | gcT | gcC | 2 | 2 | B.3 | 0.001661 |
N | 208 | A208A | gcT | gcC | 1 | 2 | P.1 | 0.000016 |
N | 208 | A208A | gcT | gcA | 1 | 2 | P.1 | 0.000016 |
N | 208 | A208T | Gct | Act | 2 | 2 | P.1.15 | 0.000465 |
N | 208 | A208T | Gct | Act | 2 | 2 | P.1.16 | 0.000748 |
N | 208 | A208V | gCt | gTt | 2 | 2 | P.7 | 0.008734 |
N | 208 | A208T | Gct | Act | 1 | 1 | 0.055556 | |
N | 208 | A208del | GCT | --- | 1 | 1 | A.1 | 0.000282 |
N | 208 | A208del | GCT | --- | 1 | 1 | A.23.1 | 0.000704 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AD.2 | 0.000219 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AE.8 | 0.000489 |
N | 208 | A208W | GCT | TGG | 1 | 1 | All | 0 |
N | 208 | A208N | GCt | AAt | 1 | 1 | All | 0 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.1 | 0.000396 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.100 | 0.000046 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
N | 208 | A208G | gCt | gGt | 1 | 1 | AY.102 | 0.000027 |
N | 208 | A208A | gcT | gcG | 1 | 1 | AY.102 | 0.000027 |
N | 208 | A208P | Gct | Cct | 1 | 1 | AY.103 | 0.000006 |
N | 208 | A208C | GCt | TGt | 1 | 1 | AY.103 | 0.000006 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.104 | 0.001984 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.109 | 0.00074 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.113 | 0.000142 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.116 | 0.000287 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.118 | 0.000063 |
N | 208 | A208I | GCT | ATA | 1 | 1 | AY.119 | 0.000035 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.12 | 0.000316 |
N | 208 | A208P | Gct | Cct | 1 | 1 | AY.120 | 0.000037 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.120 | 0.000037 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.120.2 | 0.001285 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.121 | 0.000135 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.121 | 0.000135 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.13 | 0.000161 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.14 | 0.000088 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.16 | 0.00038 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.16.1 | 0.00047 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.24 | 0.000431 |
N | 208 | A208P | Gct | Cct | 1 | 1 | AY.25 | 0.000006 |
N | 208 | A208G | gCt | gGt | 1 | 1 | AY.25 | 0.000006 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.29 | 0.000016 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.29.1 | 0.000221 |
N | 208 | A208G | gCt | gGt | 1 | 1 | AY.3 | 0.00001 |
N | 208 | A208I | GCT | ATA | 1 | 1 | AY.3 | 0.00001 |
N | 208 | A208N | GCt | AAt | 1 | 1 | AY.3 | 0.00001 |
N | 208 | A208D | gCt | gAt | 1 | 1 | AY.3 | 0.00001 |
N | 208 | A208del1 | gCt | g-t | 1 | 1 | AY.3 | 0.00001 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.3 | 0.00001 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.32 | 0.000532 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.33 | 0.000067 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.33 | 0.000067 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.35 | 0.000233 |
N | 208 | A208D | gCt | gAt | 1 | 1 | AY.36 | 0.000148 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.37 | 0.000316 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.38 | 0.000499 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.39 | 0.000025 |
N | 208 | A208G | gCt | gGt | 1 | 1 | AY.39 | 0.000025 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.39.1 | 0.00004 |
N | 208 | A208del2 | GCt | --t | 1 | 1 | AY.4.2 | 0.000022 |
N | 208 | A208D | gCt | gAt | 1 | 1 | AY.4.2 | 0.000022 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.4.3 | 0.000842 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.42 | 0.00004 |
N | 208 | A208del2 | GCt | --t | 1 | 1 | AY.42 | 0.00004 |
N | 208 | A208G | gCt | gGt | 1 | 1 | AY.43 | 0.000004 |
N | 208 | A208P | Gct | Cct | 1 | 1 | AY.44 | 0.000006 |
N | 208 | A208I | GCT | ATA | 1 | 1 | AY.44 | 0.000006 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.45 | 0.000122 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
N | 208 | A208D | gCt | gAt | 1 | 1 | AY.46.4 | 0.000165 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.46.5 | 0.000198 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.46.5 | 0.000198 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.5.4 | 0.000277 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.53 | 0.000288 |
N | 208 | A208D | gCt | gAt | 1 | 1 | AY.54 | 0.000095 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.56 | 0.001605 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.57 | 0.000656 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.6 | 0.000041 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.60 | 0.000938 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.60 | 0.000938 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.61 | 0.000105 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.61 | 0.000105 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.62 | 0.000436 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.64 | 0.000595 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.66 | 0.00107 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.68 | 0.000274 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.69 | 0.000187 |
N | 208 | A208D | gCt | gAt | 1 | 1 | AY.7 | 0.000196 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.7 | 0.000196 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.72 | 0.001361 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.73 | 0.000665 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.76 | 0.004831 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.79 | 0.001211 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.79 | 0.001211 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.8 | 0.000606 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.88 | 0.000884 |
N | 208 | A208del1 | gcT | gc- | 1 | 1 | AY.9 | 0.000068 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.9 | 0.000068 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.9.2 | 0.000037 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.91 | 0.00073 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.92 | 0.000287 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.92 | 0.000287 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.94 | 0.000443 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.95 | 0.000761 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.97 | 0.001701 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.98 | 0.000079 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.98 | 0.000079 |
N | 208 | A208A | gcT | gcC | 1 | 1 | AY.98 | 0.000079 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
N | 208 | A208del2 | GCt | --t | 1 | 1 | AY.98.1 | 0.000048 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.98.1 | 0.000048 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
N | 208 | A208T | Gct | Act | 1 | 1 | AY.99 | 0.001049 |
N | 208 | A208V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
N | 208 | A208S | Gct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
N | 208 | A208V | gCT | gTA | 1 | 1 | AZ.2 | 0.000821 |
N | 208 | A208P | Gct | Cct | 1 | 1 | AZ.2 | 0.000821 |
N | 208 | A208del2 | gCT | g-- | 1 | 1 | AZ.2 | 0.000821 |
N | 208 | A208T | Gct | Act | 1 | 1 | B | 0.000128 |
N | 208 | A208A | gcT | gcC | 1 | 1 | B | 0.000128 |
N | 208 | A208del2 | gCT | g-- | 1 | 1 | B.1 | 0.000009 |
N | 208 | A208W | GCT | TGG | 1 | 1 | B.1 | 0.000009 |
N | 208 | A208F | GCt | TTt | 1 | 1 | B.1 | 0.000009 |
N | 208 | A208del1 | gcT | gc- | 1 | 1 | B.1 | 0.000009 |
N | 208 | A208del2 | gCT | g-- | 1 | 1 | B.1.1 | 0.000018 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.10 | 0.001115 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.101 | 0.01 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.176 | 0.000439 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.189 | 0.001513 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.210 | 0.005714 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.216 | 0.00089 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.222 | 0.000204 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.228 | 0.003049 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.237 | 0.005405 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.243 | 0.004082 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.27 | 0.00565 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.277 | 0.000759 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.289 | 0.002083 |
N | 208 | A208P | Gct | Cct | 1 | 1 | B.1.1.294 | 0.001266 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.301 | 0.001179 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.303 | 0.002762 |
N | 208 | A208A | gcT | gcC | 1 | 1 | B.1.1.311 | 0.000358 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
N | 208 | A208G | gCt | gGt | 1 | 1 | B.1.1.317 | 0.000412 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.326 | 0.001761 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.37 | 0.000193 |
N | 208 | A208V | gCT | gTA | 1 | 1 | B.1.1.370 | 0.012658 |
N | 208 | A208A | gcT | gcC | 1 | 1 | B.1.1.371 | 0.010417 |
N | 208 | A208A | gcT | gcC | 1 | 1 | B.1.1.372 | 0.000689 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
N | 208 | A208D | gCt | gAt | 1 | 1 | B.1.1.409 | 0.002833 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.409 | 0.002833 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.413 | 0.006897 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.416 | 0.000905 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.433 | 0.001425 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.44 | 0.00241 |
N | 208 | A208G | gCt | gGt | 1 | 1 | B.1.1.46 | 0.004367 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
N | 208 | A208P | Gct | Cct | 1 | 1 | B.1.1.51 | 0.001718 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.517 | 0.006803 |
N | 208 | A208P | Gct | Cct | 1 | 1 | B.1.1.519 | 0.00004 |
N | 208 | A208D | gCt | gAt | 1 | 1 | B.1.1.519 | 0.00004 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.524 | 0.020833 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.525 | 0.005464 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.1.53 | 0.013699 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.54 | 0.003021 |
N | 208 | A208G | gCt | gGt | 1 | 1 | B.1.1.61 | 0.008772 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.63 | 0.000386 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.1.72 | 0.030303 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.1.147 | 0.000756 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.160 | 0.000031 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.1.160.28 | 0.002924 |
N | 208 | A208D | gCt | gAt | 1 | 1 | B.1.177 | 0.000013 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.177.12 | 0.000152 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.177.4 | 0.000211 |
N | 208 | A208A | gcT | gcC | 1 | 1 | B.1.177.56 | 0.000668 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.177.62 | 0.001192 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.1.177.63 | 0.002703 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.177.73 | 0.000566 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.194 | 0.04 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.2 | 0.000009 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.201 | 0.005682 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.213 | 0.014925 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.221 | 0.000071 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.1.239 | 0.001221 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.240 | 0.000216 |
N | 208 | A208F | GCt | TTt | 1 | 1 | B.1.240 | 0.000216 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.240 | 0.000216 |
N | 208 | A208A | gcT | gcC | 1 | 1 | B.1.241 | 0.000812 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.243 | 0.00007 |
N | 208 | A208del2 | GCt | --t | 1 | 1 | B.1.243 | 0.00007 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.1.258 | 0.000067 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.1.279 | 0.000514 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.279 | 0.000514 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.280 | 0.007143 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.311 | 0.000275 |
N | 208 | A208G | gCt | gGt | 1 | 1 | B.1.319 | 0.003049 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.324 | 0.001605 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.349 | 0.000715 |
N | 208 | A208F | GCt | TTt | 1 | 1 | B.1.351 | 0.00003 |
N | 208 | A208A | gcT | gcC | 1 | 1 | B.1.36 | 0.000146 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.1.36 | 0.000146 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.36 | 0.000146 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.36.29 | 0.000517 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.367 | 0.000792 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.378 | 0.006849 |
N | 208 | A208del1 | gcT | gc- | 1 | 1 | B.1.415 | 0.014286 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.427 | 0.00005 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.428 | 0.00102 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.436 | 0.001029 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.486 | 0.111111 |
N | 208 | A208del2 | GCt | --t | 1 | 1 | B.1.526 | 0.000024 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.580 | 0.004065 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.595 | 0.000261 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.599 | 0.00365 |
N | 208 | A208S | Gct | Tct | 1 | 1 | B.1.609 | 0.000479 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.1.621.1 | 0.000506 |
N | 208 | A208T | Gct | Act | 1 | 1 | B.40 | 0.000364 |
N | 208 | A208V | gCt | gTt | 1 | 1 | B.40 | 0.000364 |
N | 208 | A208S | Gct | Tct | 1 | 1 | C.14 | 0.004329 |
N | 208 | A208V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
N | 208 | A208T | GcT | AcA | 1 | 1 | C.35 | 0.000774 |
N | 208 | A208D | gCt | gAt | 1 | 1 | C.37 | 0.000116 |
N | 208 | A208G | gCt | gGt | 1 | 1 | C.37 | 0.000116 |
N | 208 | A208del | GCT | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 208 | A208del | GCT | --- | 1 | 1 | C.38 | 0.008065 |
N | 208 | A208P | Gct | Cct | 1 | 1 | D.2 | 0.000075 |
N | 208 | A208A | gcT | gcC | 1 | 1 | D.2 | 0.000075 |
N | 208 | A208del | GCT | --- | 1 | 1 | N.5 | 0.001767 |
N | 208 | A208D | gCt | gAt | 1 | 1 | P.1 | 0.000016 |
N | 208 | A208del | GCT | --- | 1 | 1 | P.1.1 | 0.000318 |
N | 208 | A208T | Gct | Act | 1 | 1 | P.1.12 | 0.000484 |
N | 208 | A208S | Gct | Tct | 1 | 1 | P.1.13 | 0.000898 |
N | 208 | A208V | gCt | gTt | 1 | 1 | P.1.13 | 0.000898 |
N | 208 | A208del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
N | 208 | A208A | gcT | gcC | 1 | 1 | P.1.16 | 0.000374 |
N | 208 | A208T | Gct | Act | 1 | 1 | P.1.17 | 0.000162 |
N | 208 | A208del | GCT | --- | 1 | 1 | P.1.7 | 0.000319 |
N | 208 | A208del | GCT | --- | 1 | 1 | P.1.8 | 0.004785 |
N | 208 | A208V | gCt | gTt | 1 | 1 | P.1.9 | 0.004808 |
N | 208 | A208T | Gct | Act | 1 | 1 | P.2 | 0.000187 |
N | 208 | A208V | gCt | gTt | 1 | 1 | P.3 | 0.001595 |
N | 208 | A208D | gCt | gAt | 1 | 1 | Q.1 | 0.000126 |
N | 208 | A208del | GCT | --- | 1 | 1 | Q.1 | 0.000126 |
N | 208 | A208T | Gct | Act | 1 | 1 | Q.1 | 0.000126 |
N | 208 | A208del | GCT | --- | 1 | 1 | Q.3 | 0.000145 |
N | 208 | A208S | Gct | Tct | 1 | 1 | Q.3 | 0.000145 |
N | 208 | A208S | Gct | Tct | 1 | 1 | R.1 | 0.00009 |
N | 208 | A208V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|