CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 207 | P207S | nonsyn | Cct | Tct | 9136 | 9133 | 0.999672 | 28892-28894 | |
N | 207 | P207S | nonsyn | CcT | TcC | 9136 | 1 | 0.000109457 | 28892-28894 | |
N | 207 | P207S | nonsyn | CcT | TcA | 9136 | 1 | 0.000109457 | 28892-28894 | |
N | 207 | P207S | nonsyn | CCT | AGC | 9136 | 1 | 0.000109457 | 28892-28894 | |
N | 207 | P207L | nonsyn | cCt | cTt | 5350 | 5350 | 1 | 28892-28894 | |
N | 207 | P207del | del | CCT | --- | 1487 | 1487 | 1 | 28892-28894 | |
N | 207 | P207T | nonsyn | Cct | Act | 492 | 492 | 1 | 28892-28894 | |
N | 207 | P207P | syn | ccT | ccC | 270 | 144 | 0.533333 | 28892-28894 | |
N | 207 | P207P | syn | ccT | ccA | 270 | 111 | 0.411111 | 28892-28894 | |
N | 207 | P207P | syn | ccT | ccG | 270 | 15 | 0.0555556 | 28892-28894 | |
N | 207 | P207H | nonsyn | cCt | cAt | 118 | 118 | 1 | 28892-28894 | |
N | 207 | P207R | nonsyn | cCt | cGt | 63 | 63 | 1 | 28892-28894 | |
N | 207 | P207Q | nonsyn | cCT | cAA | 26 | 26 | 1 | 28892-28894 | |
N | 207 | P207del1 | del | Cct | -ct | 15 | 9 | 0.6 | 28892-28894 | |
N | 207 | P207del1 | del | ccT | cc- | 15 | 3 | 0.2 | 28892-28894 | |
N | 207 | P207del1 | del | CcT | -cN | 15 | 3 | 0.2 | 28892-28894 | |
N | 207 | P207A | nonsyn | Cct | Gct | 12 | 12 | 1 | 28892-28894 | |
N | 207 | P207del2 | del | cCT | c-- | 8 | 5 | 0.625 | 28892-28894 | |
N | 207 | P207del2 | del | CCT | --N | 8 | 3 | 0.375 | 28892-28894 | |
N | 207 | P207F | nonsyn | CCt | TTt | 6 | 6 | 1 | 28892-28894 | |
N | 207 | P207N | nonsyn | CCt | AAt | 3 | 3 | 1 | 28892-28894 | |
N | 207 | P207I | nonsyn | CCt | ATt | 1 | 1 | 1 | 28892-28894 | |
N | 207 | P207V | nonsyn | CCt | GTt | 1 | 1 | 1 | 28892-28894 | |
N | 207 | P207G | nonsyn | CCt | GGt | 1 | 1 | 1 | 28892-28894 | |
N | 207 | P207W | nonsyn | CCT | TGG | 1 | 1 | 1 | 28892-28894 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 207 | P207S | Cct | Tct | 9133 | 9136 | All | 0.001747 |
N | 207 | P207S | CcT | TcC | 1 | 9136 | All | 0 |
N | 207 | P207S | CCT | AGC | 1 | 9136 | All | 0 |
N | 207 | P207S | CcT | TcA | 1 | 9136 | All | 0 |
N | 207 | P207L | cCt | cTt | 5350 | 5350 | All | 0.001023 |
N | 207 | P207S | Cct | Tct | 3937 | 3937 | AY.111 | 0.721062 |
N | 207 | P207L | cCt | cTt | 3508 | 3508 | B.1.311 | 0.963207 |
N | 207 | P207del | CCT | --- | 1487 | 1487 | All | 0.000284 |
N | 207 | P207S | Cct | Tct | 1353 | 1353 | B.1.349 | 0.967119 |
N | 207 | P207S | Cct | Tct | 1270 | 1270 | B.1.577 | 0.872852 |
N | 207 | P207L | cCt | cTt | 874 | 874 | AY.73 | 0.581504 |
N | 207 | P207S | Cct | Tct | 823 | 823 | AY.66 | 0.880214 |
N | 207 | P207S | Cct | Tct | 561 | 561 | B.1.595 | 0.146399 |
N | 207 | P207T | Cct | Act | 492 | 492 | All | 0.000094 |
N | 207 | P207S | Cct | Tct | 488 | 488 | AY.4 | 0.00076 |
N | 207 | P207T | Cct | Act | 330 | 330 | B.1 | 0.003023 |
N | 207 | P207del | CCT | --- | 283 | 283 | P.1 | 0.004458 |
N | 207 | P207P | ccT | ccC | 144 | 270 | All | 0.000028 |
N | 207 | P207P | ccT | ccA | 111 | 270 | All | 0.000021 |
N | 207 | P207P | ccT | ccG | 15 | 270 | All | 0.000003 |
N | 207 | P207L | cCt | cTt | 265 | 265 | B.1.599 | 0.967153 |
N | 207 | P207S | Cct | Tct | 200 | 202 | B.1 | 0.001832 |
N | 207 | P207S | CcT | TcA | 1 | 202 | B.1 | 0.000009 |
N | 207 | P207S | CcT | TcC | 1 | 202 | B.1 | 0.000009 |
N | 207 | P207del | CCT | --- | 171 | 171 | B.1.1.7 | 0.000153 |
N | 207 | P207L | cCt | cTt | 130 | 130 | AY.26 | 0.00368 |
N | 207 | P207L | cCt | cTt | 122 | 122 | B.1 | 0.001117 |
N | 207 | P207L | cCt | cTt | 121 | 121 | B.1.1.7 | 0.000108 |
N | 207 | P207H | cCt | cAt | 118 | 118 | All | 0.000023 |
N | 207 | P207del | CCT | --- | 85 | 85 | D.2 | 0.006379 |
N | 207 | P207T | Cct | Act | 66 | 66 | AY.25 | 0.000397 |
N | 207 | P207R | cCt | cGt | 63 | 63 | All | 0.000012 |
N | 207 | P207del | CCT | --- | 63 | 63 | B.1.617.2 | 0.000237 |
N | 207 | P207P | ccT | ccA | 58 | 58 | B.1.1.284 | 0.006229 |
N | 207 | P207S | Cct | Tct | 54 | 55 | B.1.617.2 | 0.000203 |
N | 207 | P207S | CCT | AGC | 1 | 55 | B.1.617.2 | 0.000004 |
N | 207 | P207R | cCt | cGt | 53 | 53 | B.1 | 0.000485 |
N | 207 | P207del | CCT | --- | 49 | 49 | AY.4 | 0.000076 |
N | 207 | P207del | CCT | --- | 48 | 48 | AY.103 | 0.000298 |
N | 207 | P207del | CCT | --- | 47 | 47 | AY.74 | 0.005435 |
N | 207 | P207del | CCT | --- | 47 | 47 | B.1 | 0.00043 |
N | 207 | P207S | Cct | Tct | 42 | 42 | B.1.1.7 | 0.000038 |
N | 207 | P207S | Cct | Tct | 42 | 42 | B.1.2 | 0.00037 |
N | 207 | P207del | CCT | --- | 36 | 36 | P.1.12 | 0.017425 |
N | 207 | P207del | CCT | --- | 35 | 35 | P.1.17 | 0.005662 |
N | 207 | P207del | CCT | --- | 34 | 34 | B.1.1 | 0.000617 |
N | 207 | P207del | CCT | --- | 34 | 34 | B.1.1.93 | 0.871795 |
N | 207 | P207del | CCT | --- | 33 | 33 | AY.25 | 0.000198 |
N | 207 | P207S | Cct | Tct | 32 | 32 | P.2 | 0.005972 |
N | 207 | P207P | ccT | ccA | 21 | 29 | B.1.1.7 | 0.000019 |
N | 207 | P207P | ccT | ccC | 8 | 29 | B.1.1.7 | 0.000007 |
N | 207 | P207del | CCT | --- | 28 | 28 | B.1.1.370 | 0.35443 |
N | 207 | P207S | Cct | Tct | 27 | 27 | AY.44 | 0.000164 |
N | 207 | P207Q | cCT | cAA | 26 | 26 | All | 0.000005 |
N | 207 | P207del | CCT | --- | 26 | 26 | AY.100 | 0.001196 |
N | 207 | P207del | CCT | --- | 25 | 25 | P.1.14 | 0.001195 |
N | 207 | P207del | CCT | --- | 24 | 24 | P.1.15 | 0.005576 |
N | 207 | P207T | Cct | Act | 23 | 23 | AY.3 | 0.000229 |
N | 207 | P207S | Cct | Tct | 23 | 23 | AY.43 | 0.000102 |
N | 207 | P207S | Cct | Tct | 23 | 23 | B.1.1 | 0.000417 |
N | 207 | P207del | CCT | --- | 23 | 23 | Q.2 | 0.01411 |
N | 207 | P207del | CCT | --- | 22 | 22 | AY.52 | 0.017915 |
N | 207 | P207L | cCt | cTt | 22 | 22 | B.1.617.2 | 0.000083 |
N | 207 | P207H | cCt | cAt | 21 | 21 | B.1.264.1 | 1 |
N | 207 | P207S | Cct | Tct | 21 | 21 | P.1 | 0.000331 |
N | 207 | P207del | CCT | --- | 20 | 20 | AY.4.2.1 | 0.00298 |
N | 207 | P207L | cCt | cTt | 20 | 20 | B.1.1 | 0.000363 |
N | 207 | P207L | cCt | cTt | 19 | 19 | B.1.2 | 0.000167 |
N | 207 | P207del | CCT | --- | 18 | 18 | AY.44 | 0.00011 |
N | 207 | P207H | cCt | cAt | 18 | 18 | B.1.1.7 | 0.000016 |
N | 207 | P207S | Cct | Tct | 18 | 18 | B.1.596 | 0.001568 |
N | 207 | P207S | Cct | Tct | 17 | 17 | AY.25 | 0.000102 |
N | 207 | P207del | CCT | --- | 16 | 16 | AY.3 | 0.000159 |
N | 207 | P207del | CCT | --- | 16 | 16 | AY.43 | 0.000071 |
N | 207 | P207del1 | Cct | -ct | 9 | 15 | All | 0.000002 |
N | 207 | P207del1 | CcT | -cN | 3 | 15 | All | 0.000001 |
N | 207 | P207del1 | ccT | cc- | 3 | 15 | All | 0.000001 |
N | 207 | P207L | cCt | cTt | 15 | 15 | AY.13 | 0.002415 |
N | 207 | P207del | CCT | --- | 15 | 15 | AY.26 | 0.000425 |
N | 207 | P207S | Cct | Tct | 15 | 15 | B.1.1.28 | 0.004669 |
N | 207 | P207T | Cct | Act | 15 | 15 | B.1.1.526 | 0.053191 |
N | 207 | P207L | cCt | cTt | 15 | 15 | B.1.577 | 0.010309 |
N | 207 | P207del | CCT | --- | 15 | 15 | P.1.1 | 0.004765 |
N | 207 | P207P | ccT | ccC | 9 | 13 | B.1 | 0.000082 |
N | 207 | P207P | ccT | ccA | 4 | 13 | B.1 | 0.000037 |
N | 207 | P207Q | cCT | cAA | 13 | 13 | B.1.213 | 0.19403 |
N | 207 | P207L | cCt | cTt | 13 | 13 | P.1 | 0.000205 |
N | 207 | P207A | Cct | Gct | 12 | 12 | All | 0.000002 |
N | 207 | P207P | ccT | ccC | 10 | 12 | AY.44 | 0.000061 |
N | 207 | P207P | ccT | ccG | 1 | 12 | AY.44 | 0.000006 |
N | 207 | P207P | ccT | ccA | 1 | 12 | AY.44 | 0.000006 |
N | 207 | P207del | CCT | --- | 12 | 12 | AY.47 | 0.000373 |
N | 207 | P207L | cCt | cTt | 12 | 12 | B.1.489 | 0.521739 |
N | 207 | P207H | cCt | cAt | 11 | 11 | AY.25 | 0.000066 |
N | 207 | P207T | Cct | Act | 11 | 11 | AY.4 | 0.000017 |
N | 207 | P207P | ccT | ccC | 10 | 11 | B.1.1 | 0.000181 |
N | 207 | P207P | ccT | ccA | 1 | 11 | B.1.1 | 0.000018 |
N | 207 | P207L | cCt | cTt | 11 | 11 | B.1.149 | 0.037671 |
N | 207 | P207L | cCt | cTt | 11 | 11 | B.1.210 | 0.023454 |
N | 207 | P207del | CCT | --- | 10 | 10 | AY.23 | 0.000697 |
N | 207 | P207P | ccT | ccG | 5 | 10 | AY.4 | 0.000008 |
N | 207 | P207P | ccT | ccC | 4 | 10 | AY.4 | 0.000006 |
N | 207 | P207P | ccT | ccA | 1 | 10 | AY.4 | 0.000002 |
N | 207 | P207S | Cct | Tct | 10 | 10 | AY.4.5 | 0.001075 |
N | 207 | P207del | CCT | --- | 10 | 10 | B.1.1.519 | 0.000397 |
N | 207 | P207del | CCT | --- | 10 | 10 | B.1.214 | 0.03663 |
N | 207 | P207del | CCT | --- | 9 | 9 | AY.118 | 0.000564 |
N | 207 | P207L | cCt | cTt | 9 | 9 | AY.20 | 0.00035 |
N | 207 | P207del | CCT | --- | 9 | 9 | AY.45 | 0.001095 |
N | 207 | P207H | cCt | cAt | 9 | 9 | B.1.617.2 | 0.000034 |
N | 207 | P207del2 | cCT | c-- | 5 | 8 | All | 0.000001 |
N | 207 | P207del2 | CCT | --N | 3 | 8 | All | 0.000001 |
N | 207 | P207S | Cct | Tct | 8 | 8 | AY.120 | 0.000297 |
N | 207 | P207del | CCT | --- | 8 | 8 | AY.21 | 0.01518 |
N | 207 | P207L | cCt | cTt | 8 | 8 | AY.4 | 0.000012 |
N | 207 | P207L | cCt | cTt | 8 | 8 | B.1.177.73 | 0.00453 |
N | 207 | P207del | CCT | --- | 8 | 8 | B.1.243 | 0.000557 |
N | 207 | P207del | CCT | --- | 8 | 8 | B.1.526 | 0.000188 |
N | 207 | P207L | cCt | cTt | 8 | 8 | B.1.596 | 0.000697 |
N | 207 | P207H | cCt | cAt | 8 | 8 | B.1.609 | 0.003835 |
N | 207 | P207S | Cct | Tct | 7 | 7 | AY.23 | 0.000488 |
N | 207 | P207P | ccT | ccC | 6 | 7 | AY.3 | 0.00006 |
N | 207 | P207P | ccT | ccA | 1 | 7 | AY.3 | 0.00001 |
N | 207 | P207S | Cct | Tct | 7 | 7 | AY.47 | 0.000218 |
N | 207 | P207H | cCt | cAt | 7 | 7 | B.1 | 0.000064 |
N | 207 | P207P | ccT | ccC | 7 | 7 | B.1.177.60 | 0.001529 |
N | 207 | P207L | cCt | cTt | 7 | 7 | B.1.279 | 0.003595 |
N | 207 | P207F | CCt | TTt | 6 | 6 | All | 0.000001 |
N | 207 | P207S | Cct | Tct | 6 | 6 | AY.102 | 0.000159 |
N | 207 | P207S | Cct | Tct | 6 | 6 | AY.103 | 0.000037 |
N | 207 | P207del | CCT | --- | 6 | 6 | AY.119 | 0.000212 |
N | 207 | P207S | Cct | Tct | 6 | 6 | AY.3 | 0.00006 |
N | 207 | P207T | Cct | Act | 6 | 6 | AY.43 | 0.000027 |
N | 207 | P207P | ccT | ccC | 6 | 6 | AY.5 | 0.000124 |
N | 207 | P207del | CCT | --- | 6 | 6 | AY.75 | 0.000336 |
N | 207 | P207del | CCT | --- | 6 | 6 | AY.85 | 0.002563 |
N | 207 | P207P | ccT | ccC | 3 | 6 | B.1.2 | 0.000026 |
N | 207 | P207P | ccT | ccA | 2 | 6 | B.1.2 | 0.000018 |
N | 207 | P207P | ccT | ccG | 1 | 6 | B.1.2 | 0.000009 |
N | 207 | P207S | Cct | Tct | 6 | 6 | B.1.284 | 0.078947 |
N | 207 | P207del | CCT | --- | 6 | 6 | B.1.349 | 0.004289 |
N | 207 | P207H | cCt | cAt | 6 | 6 | C.16 | 0.006363 |
N | 207 | P207S | Cct | Tct | 6 | 6 | C.36 | 0.005464 |
N | 207 | P207H | cCt | cAt | 5 | 5 | AY.103 | 0.000031 |
N | 207 | P207S | Cct | Tct | 5 | 5 | AY.20 | 0.000194 |
N | 207 | P207P | ccT | ccC | 5 | 5 | AY.25 | 0.00003 |
N | 207 | P207del | CCT | --- | 5 | 5 | AY.27 | 0.000324 |
N | 207 | P207L | cCt | cTt | 5 | 5 | AY.3 | 0.00005 |
N | 207 | P207H | cCt | cAt | 5 | 5 | AY.33 | 0.000334 |
N | 207 | P207P | ccT | ccC | 5 | 5 | AY.39.1 | 0.000198 |
N | 207 | P207S | Cct | Tct | 5 | 5 | B.1.1.214 | 0.000277 |
N | 207 | P207L | cCt | cTt | 5 | 5 | B.1.1.306 | 0.002192 |
N | 207 | P207S | Cct | Tct | 5 | 5 | B.1.1.369 | 0.002231 |
N | 207 | P207A | Cct | Gct | 5 | 5 | B.1.258.14 | 0.004902 |
N | 207 | P207P | ccT | ccA | 5 | 5 | B.1.356 | 0.008636 |
N | 207 | P207del | CCT | --- | 5 | 5 | B.1.617.1 | 0.000645 |
N | 207 | P207del | CCT | --- | 4 | 4 | AD.2 | 0.000876 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.100 | 0.000184 |
N | 207 | P207del | CCT | --- | 4 | 4 | AY.29 | 0.000063 |
N | 207 | P207T | Cct | Act | 4 | 4 | AY.3.1 | 0.000341 |
N | 207 | P207L | cCt | cTt | 4 | 4 | AY.33 | 0.000267 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.39 | 0.000099 |
N | 207 | P207del | CCT | --- | 4 | 4 | AY.39 | 0.000099 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.4.2 | 0.000087 |
N | 207 | P207del | CCT | --- | 4 | 4 | AY.4.2 | 0.000087 |
N | 207 | P207P | ccT | ccC | 4 | 4 | AY.43 | 0.000018 |
N | 207 | P207L | cCt | cTt | 4 | 4 | AY.43 | 0.000018 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.5 | 0.000083 |
N | 207 | P207del | CCT | --- | 4 | 4 | AY.59 | 0.002119 |
N | 207 | P207P | ccT | ccA | 4 | 4 | AY.63 | 0.001547 |
N | 207 | P207del | CCT | --- | 4 | 4 | AY.9.1 | 0.000335 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.98 | 0.000316 |
N | 207 | P207L | cCt | cTt | 4 | 4 | B | 0.000511 |
N | 207 | P207del | CCT | --- | 4 | 4 | B | 0.000511 |
N | 207 | P207L | cCt | cTt | 4 | 4 | B.1.1.186 | 0.013746 |
N | 207 | P207del | CCT | --- | 4 | 4 | B.1.1.222 | 0.000816 |
N | 207 | P207del | CCT | --- | 4 | 4 | B.1.1.232 | 0.00726 |
N | 207 | P207S | Cct | Tct | 4 | 4 | B.1.1.243 | 0.016327 |
N | 207 | P207S | Cct | Tct | 4 | 4 | B.1.1.277 | 0.003035 |
N | 207 | P207P | ccT | ccC | 4 | 4 | B.1.177 | 0.000053 |
N | 207 | P207Q | cCT | cAA | 4 | 4 | B.1.3 | 0.010471 |
N | 207 | P207L | cCt | cTt | 4 | 4 | B.1.609 | 0.001918 |
N | 207 | P207P | ccT | ccC | 3 | 4 | B.1.617.2 | 0.000011 |
N | 207 | P207P | ccT | ccG | 1 | 4 | B.1.617.2 | 0.000004 |
N | 207 | P207P | ccT | ccG | 4 | 4 | B.1.623 | 0.002146 |
N | 207 | P207del1 | Cct | -ct | 2 | 4 | P.1 | 0.000032 |
N | 207 | P207del1 | CcT | -cN | 2 | 4 | P.1 | 0.000032 |
N | 207 | P207del1 | Cct | -ct | 4 | 4 | P.1.14 | 0.000191 |
N | 207 | P207del | CCT | --- | 4 | 4 | P.1.2 | 0.004624 |
N | 207 | P207L | cCt | cTt | 3 | 3 | AE.8 | 0.001467 |
N | 207 | P207N | CCt | AAt | 3 | 3 | All | 0.000001 |
N | 207 | P207del | CCT | --- | 3 | 3 | AY.102 | 0.00008 |
N | 207 | P207L | cCt | cTt | 3 | 3 | AY.103 | 0.000019 |
N | 207 | P207S | Cct | Tct | 3 | 3 | AY.117 | 0.000254 |
N | 207 | P207del | CCT | --- | 3 | 3 | AY.20 | 0.000117 |
N | 207 | P207P | ccT | ccC | 2 | 3 | AY.26 | 0.000057 |
N | 207 | P207P | ccT | ccA | 1 | 3 | AY.26 | 0.000028 |
N | 207 | P207del | CCT | --- | 3 | 3 | AY.30 | 0.001187 |
N | 207 | P207del | CCT | --- | 3 | 3 | AY.33 | 0.0002 |
N | 207 | P207P | ccT | ccC | 3 | 3 | AY.36 | 0.000445 |
N | 207 | P207del | CCT | --- | 3 | 3 | AY.36 | 0.000445 |
N | 207 | P207T | Cct | Act | 3 | 3 | AY.39 | 0.000074 |
N | 207 | P207del2 | cCT | c-- | 3 | 3 | AY.4 | 0.000005 |
N | 207 | P207del | CCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
N | 207 | P207P | ccT | ccC | 3 | 3 | AY.42 | 0.000121 |
N | 207 | P207L | cCt | cTt | 3 | 3 | AY.44 | 0.000018 |
N | 207 | P207P | ccT | ccC | 3 | 3 | AY.46.2 | 0.001906 |
N | 207 | P207del | CCT | --- | 3 | 3 | AY.63 | 0.001161 |
N | 207 | P207L | cCt | cTt | 3 | 3 | AY.71 | 0.001425 |
N | 207 | P207del | CCT | --- | 3 | 3 | AY.9.2 | 0.00011 |
N | 207 | P207S | Cct | Tct | 3 | 3 | AY.98.1 | 0.000145 |
N | 207 | P207del | CCT | --- | 3 | 3 | B.1.1.170 | 0.003741 |
N | 207 | P207L | cCt | cTt | 3 | 3 | B.1.1.214 | 0.000166 |
N | 207 | P207S | Cct | Tct | 3 | 3 | B.1.1.222 | 0.000612 |
N | 207 | P207L | cCt | cTt | 3 | 3 | B.1.1.280 | 0.009259 |
N | 207 | P207L | cCt | cTt | 3 | 3 | B.1.1.318 | 0.000905 |
N | 207 | P207S | Cct | Tct | 3 | 3 | B.1.1.368 | 0.009259 |
N | 207 | P207del | CCT | --- | 3 | 3 | B.1.1.434 | 0.001046 |
N | 207 | P207L | cCt | cTt | 3 | 3 | B.1.1.50 | 0.002037 |
N | 207 | P207P | ccT | ccC | 3 | 3 | B.1.1.519 | 0.000119 |
N | 207 | P207del1 | ccT | cc- | 2 | 3 | B.1.1.7 | 0.000002 |
N | 207 | P207del1 | CcT | -cN | 1 | 3 | B.1.1.7 | 0.000001 |
N | 207 | P207T | Cct | Act | 3 | 3 | B.1.177 | 0.00004 |
N | 207 | P207H | cCt | cAt | 3 | 3 | B.1.2 | 0.000026 |
N | 207 | P207F | CCt | TTt | 3 | 3 | B.1.349 | 0.002144 |
N | 207 | P207del | CCT | --- | 3 | 3 | B.1.36 | 0.000438 |
N | 207 | P207L | cCt | cTt | 3 | 3 | B.1.428 | 0.003061 |
N | 207 | P207S | Cct | Tct | 3 | 3 | B.1.429 | 0.000071 |
N | 207 | P207del | CCT | --- | 3 | 3 | B.1.576 | 0.00272 |
N | 207 | P207L | cCt | cTt | 3 | 3 | B.1.576 | 0.00272 |
N | 207 | P207S | Cct | Tct | 3 | 3 | B.1.581 | 0.028302 |
N | 207 | P207L | cCt | cTt | 3 | 3 | C.16 | 0.003181 |
N | 207 | P207L | cCt | cTt | 3 | 3 | D.2 | 0.000225 |
N | 207 | P207P | ccT | ccC | 3 | 3 | P.1.7 | 0.000958 |
N | 207 | P207P | ccT | ccC | 3 | 3 | P.6 | 0.009434 |
N | 207 | P207P | ccT | ccC | 2 | 2 | 0.111111 | |
N | 207 | P207P | ccT | ccC | 2 | 2 | AY.100 | 0.000092 |
N | 207 | P207P | ccT | ccC | 1 | 2 | AY.102 | 0.000027 |
N | 207 | P207P | ccT | ccA | 1 | 2 | AY.102 | 0.000027 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.110 | 0.000225 |
N | 207 | P207L | cCt | cTt | 2 | 2 | AY.114 | 0.000462 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.120 | 0.000074 |
N | 207 | P207del2 | cCT | c-- | 2 | 2 | AY.120 | 0.000074 |
N | 207 | P207S | Cct | Tct | 2 | 2 | AY.26 | 0.000057 |
N | 207 | P207P | ccT | ccC | 2 | 2 | AY.29 | 0.000032 |
N | 207 | P207A | Cct | Gct | 2 | 2 | AY.3 | 0.00002 |
N | 207 | P207T | Cct | Act | 2 | 2 | AY.33 | 0.000134 |
N | 207 | P207L | cCt | cTt | 2 | 2 | AY.4.2 | 0.000043 |
N | 207 | P207P | ccT | ccG | 1 | 2 | AY.4.2 | 0.000022 |
N | 207 | P207P | ccT | ccC | 1 | 2 | AY.4.2 | 0.000022 |
N | 207 | P207del2 | CCT | --N | 2 | 2 | AY.4.2.1 | 0.000298 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.40 | 0.001929 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.42 | 0.00008 |
N | 207 | P207L | cCt | cTt | 2 | 2 | AY.42 | 0.00008 |
N | 207 | P207H | cCt | cAt | 2 | 2 | AY.44 | 0.000012 |
N | 207 | P207T | Cct | Act | 2 | 2 | AY.44 | 0.000012 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.46 | 0.000208 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.5 | 0.000041 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.50 | 0.001599 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.54 | 0.000191 |
N | 207 | P207H | cCt | cAt | 2 | 2 | AY.6 | 0.000082 |
N | 207 | P207S | Cct | Tct | 2 | 2 | AY.7.1 | 0.000225 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.7.2 | 0.001119 |
N | 207 | P207L | cCt | cTt | 2 | 2 | AY.74 | 0.000231 |
N | 207 | P207L | cCt | cTt | 2 | 2 | AY.75 | 0.000112 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.98.1 | 0.000097 |
N | 207 | P207del | CCT | --- | 2 | 2 | AY.99.2 | 0.000184 |
N | 207 | P207S | Cct | Tct | 2 | 2 | AY.99.2 | 0.000184 |
N | 207 | P207Q | cCT | cAA | 2 | 2 | B.1.1 | 0.000036 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.1.1 | 0.000653 |
N | 207 | P207S | Cct | Tct | 2 | 2 | B.1.1.318 | 0.000604 |
N | 207 | P207del | CCT | --- | 2 | 2 | B.1.1.33 | 0.000842 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.1.33 | 0.000842 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.1.402 | 0.022222 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.1.422 | 0.090909 |
N | 207 | P207S | Cct | Tct | 2 | 2 | B.1.1.70 | 0.000682 |
N | 207 | P207T | Cct | Act | 2 | 2 | B.1.160 | 0.000062 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.177 | 0.000026 |
N | 207 | P207T | Cct | Act | 2 | 2 | B.1.2 | 0.000018 |
N | 207 | P207del | CCT | --- | 2 | 2 | B.1.2 | 0.000018 |
N | 207 | P207Q | cCT | cAA | 2 | 2 | B.1.2 | 0.000018 |
N | 207 | P207P | ccT | ccC | 2 | 2 | B.1.221 | 0.000142 |
N | 207 | P207R | cCt | cGt | 2 | 2 | B.1.243 | 0.000139 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.258 | 0.000133 |
N | 207 | P207H | cCt | cAt | 2 | 2 | B.1.258.24 | 0.021505 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.324 | 0.00321 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.344 | 0.016393 |
N | 207 | P207del | CCT | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 207 | P207T | Cct | Act | 2 | 2 | B.1.351.3 | 0.001753 |
N | 207 | P207H | cCt | cAt | 2 | 2 | B.1.36 | 0.000292 |
N | 207 | P207R | cCt | cGt | 2 | 2 | B.1.367 | 0.001585 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.39 | 0.007812 |
N | 207 | P207S | Cct | Tct | 2 | 2 | B.1.396 | 0.001411 |
N | 207 | P207H | cCt | cAt | 2 | 2 | B.1.438.1 | 0.000215 |
N | 207 | P207P | ccT | ccA | 2 | 2 | B.1.478 | 0.023529 |
N | 207 | P207P | ccT | ccC | 2 | 2 | B.1.526 | 0.000047 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.549 | 0.014388 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.580 | 0.00813 |
N | 207 | P207F | CCt | TTt | 2 | 2 | B.1.596 | 0.000174 |
N | 207 | P207L | cCt | cTt | 2 | 2 | B.1.637 | 0.000146 |
N | 207 | P207del | CCT | --- | 2 | 2 | C.37 | 0.000232 |
N | 207 | P207P | ccT | ccC | 2 | 2 | D.2 | 0.00015 |
N | 207 | P207del | CCT | --- | 2 | 2 | P.1.10 | 0.000539 |
N | 207 | P207S | Cct | Tct | 2 | 2 | P.1.16 | 0.000748 |
N | 207 | P207L | cCt | cTt | 2 | 2 | P.1.17 | 0.000324 |
N | 207 | P207S | Cct | Tct | 2 | 2 | P.1.17 | 0.000324 |
N | 207 | P207del | CCT | --- | 2 | 2 | P.1.7 | 0.000639 |
N | 207 | P207del | CCT | --- | 2 | 2 | P.2 | 0.000373 |
N | 207 | P207A | Cct | Gct | 1 | 1 | 0.055556 | |
N | 207 | P207R | cCt | cGt | 1 | 1 | 0.055556 | |
N | 207 | P207L | cCt | cTt | 1 | 1 | A | 0.000387 |
N | 207 | P207L | cCt | cTt | 1 | 1 | A.1 | 0.000282 |
N | 207 | P207del | CCT | --- | 1 | 1 | A.1 | 0.000282 |
N | 207 | P207P | ccT | ccA | 1 | 1 | A.2.5 | 0.000499 |
N | 207 | P207del | CCT | --- | 1 | 1 | A.23.1 | 0.000704 |
N | 207 | P207R | cCt | cGt | 1 | 1 | AD.2 | 0.000219 |
N | 207 | P207W | CCT | TGG | 1 | 1 | All | 0 |
N | 207 | P207I | CCt | ATt | 1 | 1 | All | 0 |
N | 207 | P207G | CCt | GGt | 1 | 1 | All | 0 |
N | 207 | P207V | CCt | GTt | 1 | 1 | All | 0 |
N | 207 | P207H | cCt | cAt | 1 | 1 | AY.102 | 0.000027 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.102 | 0.000027 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.103 | 0.000006 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.103 | 0.000006 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.105 | 0.000643 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.109 | 0.00074 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.11 | 0.001339 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.113 | 0.000142 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.117 | 0.000085 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.118 | 0.000063 |
N | 207 | P207P | ccT | ccA | 1 | 1 | AY.119 | 0.000035 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.12 | 0.000316 |
N | 207 | P207H | cCt | cAt | 1 | 1 | AY.120 | 0.000037 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.120 | 0.000037 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.120 | 0.000037 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.121 | 0.000135 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.13 | 0.000161 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.14 | 0.000088 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.16 | 0.00038 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.16 | 0.00038 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.16.1 | 0.00047 |
N | 207 | P207P | ccT | ccA | 1 | 1 | AY.20 | 0.000039 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.23 | 0.00007 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.24 | 0.000431 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.25 | 0.000006 |
N | 207 | P207H | cCt | cAt | 1 | 1 | AY.27 | 0.000065 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.28 | 0.00189 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.29 | 0.000016 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.29.1 | 0.000221 |
N | 207 | P207del1 | Cct | -ct | 1 | 1 | AY.3 | 0.00001 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.3.1 | 0.000085 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.32 | 0.000532 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.32 | 0.000532 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.33 | 0.000067 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.34 | 0.000097 |
N | 207 | P207H | cCt | cAt | 1 | 1 | AY.36 | 0.000148 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.37 | 0.000316 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.38 | 0.000499 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
N | 207 | P207H | cCt | cAt | 1 | 1 | AY.39.1 | 0.00004 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.39.1 | 0.00004 |
N | 207 | P207A | Cct | Gct | 1 | 1 | AY.4 | 0.000002 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.4.3 | 0.000842 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.40 | 0.000964 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.42 | 0.00004 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.45 | 0.000122 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.46 | 0.000104 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.46.2 | 0.000635 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.46.4 | 0.000165 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.46.6 | 0.000072 |
N | 207 | P207del1 | ccT | cc- | 1 | 1 | AY.47 | 0.000031 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.5 | 0.000021 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.5.4 | 0.000277 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.51 | 0.000909 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.54 | 0.000095 |
N | 207 | P207P | ccT | ccG | 1 | 1 | AY.55 | 0.000917 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.57 | 0.000656 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.57 | 0.000656 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.58 | 0.000907 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.59 | 0.00053 |
N | 207 | P207N | CCt | AAt | 1 | 1 | AY.59 | 0.00053 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.6 | 0.000041 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.6 | 0.000041 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.6 | 0.000041 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.61 | 0.000105 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.61 | 0.000105 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.65 | 0.000533 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.68 | 0.000274 |
N | 207 | P207P | ccT | ccA | 1 | 1 | AY.69 | 0.000187 |
N | 207 | P207T | Cct | Act | 1 | 1 | AY.7.1 | 0.000113 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.70 | 0.000209 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.74 | 0.000116 |
N | 207 | P207L | cCt | cTt | 1 | 1 | AY.75.1 | 0.00018 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.79 | 0.001211 |
N | 207 | P207H | cCt | cAt | 1 | 1 | AY.89 | 0.004902 |
N | 207 | P207P | ccT | ccA | 1 | 1 | AY.9 | 0.000068 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.9 | 0.000068 |
N | 207 | P207R | cCt | cGt | 1 | 1 | AY.9.1 | 0.000084 |
N | 207 | P207I | CCt | ATt | 1 | 1 | AY.9.2 | 0.000037 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
N | 207 | P207del2 | CCT | --N | 1 | 1 | AY.98 | 0.000079 |
N | 207 | P207del | CCT | --- | 1 | 1 | AY.98 | 0.000079 |
N | 207 | P207P | ccT | ccC | 1 | 1 | AY.98.1 | 0.000048 |
N | 207 | P207H | cCt | cAt | 1 | 1 | AZ.2 | 0.000821 |
N | 207 | P207H | cCt | cAt | 1 | 1 | B | 0.000128 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B | 0.000128 |
N | 207 | P207F | CCt | TTt | 1 | 1 | B.1 | 0.000009 |
N | 207 | P207Q | cCT | cAA | 1 | 1 | B.1 | 0.000009 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.176 | 0.000439 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.181 | 0.004545 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.1.1.189 | 0.001513 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.198 | 0.001468 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.207 | 0.001182 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
N | 207 | P207P | ccT | ccA | 1 | 1 | B.1.1.222 | 0.000204 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.237 | 0.005405 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.25 | 0.000569 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.251 | 0.007937 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.263 | 0.001558 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.27 | 0.00565 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.277 | 0.000759 |
N | 207 | P207H | cCt | cAt | 1 | 1 | B.1.1.28 | 0.000311 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.298 | 0.000862 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.303 | 0.002762 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.307 | 0.002532 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.311 | 0.000358 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.385 | 0.004464 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.39 | 0.00051 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.413 | 0.006897 |
N | 207 | P207H | cCt | cAt | 1 | 1 | B.1.1.416 | 0.000905 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.1.432 | 0.001266 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.434 | 0.000349 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.1.519 | 0.00004 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
N | 207 | P207A | Cct | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.103 | 0.019231 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.119 | 0.010526 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.126 | 0.001276 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.160 | 0.000031 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.1.160 | 0.000031 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.1.177.16 | 0.000664 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.177.4 | 0.000211 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.177.44 | 0.000519 |
N | 207 | P207W | CCT | TGG | 1 | 1 | B.1.177.63 | 0.002703 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.1.177.66 | 0.041667 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.177.73 | 0.000566 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.234 | 0.000132 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.241 | 0.000812 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.243 | 0.00007 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.247 | 0.014925 |
N | 207 | P207P | ccT | ccA | 1 | 1 | B.1.258 | 0.000067 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.258 | 0.000067 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.1.258.17 | 0.000104 |
N | 207 | P207H | cCt | cAt | 1 | 1 | B.1.264 | 0.012346 |
N | 207 | P207Q | cCT | cAA | 1 | 1 | B.1.279 | 0.000514 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.302 | 0.013333 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.324 | 0.001605 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.325 | 0.006897 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.330 | 0.028571 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.336 | 0.002439 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.1.343 | 0.020833 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.1.351 | 0.00003 |
N | 207 | P207A | Cct | Gct | 1 | 1 | B.1.36 | 0.000146 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.1.36.10 | 0.004785 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.36.22 | 0.001208 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.361 | 0.001289 |
N | 207 | P207H | cCt | cAt | 1 | 1 | B.1.366 | 0.004878 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.367 | 0.000792 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.367 | 0.000792 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.369 | 0.000285 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.400 | 0.000429 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.417 | 0.028571 |
N | 207 | P207R | cCt | cGt | 1 | 1 | B.1.427 | 0.00005 |
N | 207 | P207H | cCt | cAt | 1 | 1 | B.1.427 | 0.00005 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.427 | 0.00005 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.429 | 0.000024 |
N | 207 | P207H | cCt | cAt | 1 | 1 | B.1.438 | 0.006536 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.492 | 0.007042 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.497 | 0.000315 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.501 | 0.007353 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.517 | 0.000427 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.526 | 0.000024 |
N | 207 | P207A | Cct | Gct | 1 | 1 | B.1.564 | 0.000426 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.567 | 0.003333 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.569 | 0.014493 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.575 | 0.000303 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.576 | 0.000907 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.580 | 0.004065 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.580 | 0.004065 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.595 | 0.000261 |
N | 207 | P207del | CCT | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 207 | P207P | ccT | ccG | 1 | 1 | B.1.596 | 0.000087 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.605 | 0.005952 |
N | 207 | P207V | CCt | GTt | 1 | 1 | B.1.617.1 | 0.000129 |
N | 207 | P207P | ccT | ccA | 1 | 1 | B.1.617.1 | 0.000129 |
N | 207 | P207T | Cct | Act | 1 | 1 | B.1.617.2 | 0.000004 |
N | 207 | P207G | CCt | GGt | 1 | 1 | B.1.617.2 | 0.000004 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.78 | 0.008547 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.1.94 | 0.027027 |
N | 207 | P207R | cCt | cGt | 1 | 1 | B.31 | 0.003731 |
N | 207 | P207Q | cCT | cAA | 1 | 1 | B.40 | 0.000364 |
N | 207 | P207L | cCt | cTt | 1 | 1 | B.40 | 0.000364 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.55 | 0.00295 |
N | 207 | P207P | ccT | ccC | 1 | 1 | B.58 | 0.010204 |
N | 207 | P207P | ccT | ccC | 1 | 1 | C.1 | 0.002392 |
N | 207 | P207N | CCt | AAt | 1 | 1 | C.35 | 0.000774 |
N | 207 | P207del | CCT | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 207 | P207S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
N | 207 | P207T | Cct | Act | 1 | 1 | M.2 | 0.083333 |
N | 207 | P207del | CCT | --- | 1 | 1 | N.5 | 0.001767 |
N | 207 | P207Q | cCT | cAA | 1 | 1 | P.1 | 0.000016 |
N | 207 | P207N | CCt | AAt | 1 | 1 | P.1 | 0.000016 |
N | 207 | P207P | ccT | ccC | 1 | 1 | P.1 | 0.000016 |
N | 207 | P207H | cCt | cAt | 1 | 1 | P.1 | 0.000016 |
N | 207 | P207L | cCt | cTt | 1 | 1 | P.1.10 | 0.000269 |
N | 207 | P207S | Cct | Tct | 1 | 1 | P.1.11 | 0.010204 |
N | 207 | P207P | ccT | ccA | 1 | 1 | P.1.12 | 0.000484 |
N | 207 | P207del1 | Cct | -ct | 1 | 1 | P.1.12 | 0.000484 |
N | 207 | P207S | Cct | Tct | 1 | 1 | P.1.12 | 0.000484 |
N | 207 | P207L | cCt | cTt | 1 | 1 | P.1.12 | 0.000484 |
N | 207 | P207del | CCT | --- | 1 | 1 | P.1.13 | 0.000898 |
N | 207 | P207S | Cct | Tct | 1 | 1 | P.1.14 | 0.000048 |
N | 207 | P207L | cCt | cTt | 1 | 1 | P.1.14 | 0.000048 |
N | 207 | P207S | Cct | Tct | 1 | 1 | P.1.15 | 0.000232 |
N | 207 | P207L | cCt | cTt | 1 | 1 | P.1.15 | 0.000232 |
N | 207 | P207L | cCt | cTt | 1 | 1 | P.1.16 | 0.000374 |
N | 207 | P207del | CCT | --- | 1 | 1 | P.1.16 | 0.000374 |
N | 207 | P207Q | cCT | cAA | 1 | 1 | P.1.17 | 0.000162 |
N | 207 | P207L | cCt | cTt | 1 | 1 | P.1.7 | 0.000319 |
N | 207 | P207del1 | Cct | -ct | 1 | 1 | P.1.7 | 0.000319 |
N | 207 | P207del | CCT | --- | 1 | 1 | P.1.8 | 0.004785 |
N | 207 | P207P | ccT | ccC | 1 | 1 | P.2 | 0.000187 |
N | 207 | P207R | cCt | cGt | 1 | 1 | P.6 | 0.003145 |
N | 207 | P207L | cCt | cTt | 1 | 1 | Q.1 | 0.000126 |
N | 207 | P207del | CCT | --- | 1 | 1 | Q.1 | 0.000126 |
N | 207 | P207del | CCT | --- | 1 | 1 | Q.3 | 0.000145 |
N | 207 | P207P | ccT | ccC | 1 | 1 | Q.3 | 0.000145 |
N | 207 | P207del | CCT | --- | 1 | 1 | Q.8 | 0.000165 |
N | 207 | P207L | cCt | cTt | 1 | 1 | Q.8 | 0.000165 |
N | 207 | P207P | ccT | ccC | 1 | 1 | R.1 | 0.00009 |
N | 207 | P207S | Cct | Tct | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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