CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 206

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	206	S206F		nonsyn	tCt	tTt	5670	5668	0.999647	28889-28891
N	206	S206F		nonsyn	tCT	tTC	5670	2	0.000352734	28889-28891
N	206	S206del		del	TCT	---	1700	1700	1	28889-28891
N	206	S206S		syn	tcT	tcG	980	536	0.546939	28889-28891
N	206	S206S		syn	tcT	tcC	980	390	0.397959	28889-28891
N	206	S206S		syn	tcT	tcA	980	54	0.055102	28889-28891
N	206	S206P		nonsyn	Tct	Cct	755	755	1	28889-28891
N	206	S206T		nonsyn	Tct	Act	209	208	0.995215	28889-28891
N	206	S206T		nonsyn	TcT	AcC	209	1	0.00478469	28889-28891
N	206	S206L		nonsyn	TCt	CTt	149	147	0.986577	28889-28891
N	206	S206L		nonsyn	tCT	tTG	149	1	0.00671141	28889-28891
N	206	S206L		nonsyn	tCT	tTA	149	1	0.00671141	28889-28891
N	206	S206Y		nonsyn	tCt	tAt	138	133	0.963768	28889-28891
N	206	S206Y		nonsyn	tCT	tAC	138	5	0.0362319	28889-28891
N	206	S206A		nonsyn	Tct	Gct	103	103	1	28889-28891
N	206	S206C		nonsyn	tCt	tGt	33	33	1	28889-28891
N	206	S206del2		del	tCT	t--	8	6	0.75	28889-28891
N	206	S206del2		del	TCt	--t	8	2	0.25	28889-28891
N	206	S206del1		del	tcT	tc-	5	5	1	28889-28891
N	206	S206N		nonsyn	TCT	AAC	2	1	0.5	28889-28891
N	206	S206G		nonsyn	TCT	GGC	2	1	0.5	28889-28891
N	206	S206N		nonsyn	TCt	AAt	2	1	0.5	28889-28891
N	206	S206G		nonsyn	TCt	GGt	2	1	0.5	28889-28891
N	206	S206D		nonsyn	TCt	GAt	1	1	1	28889-28891
N	206	S206H		nonsyn	TCt	CAt	1	1	1	28889-28891
N	206	S206X		nonsyn	tCT	tAA	1	1	1	28889-28891

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	206	S206F	tCt	tTt	5668	5670	All	0.001084
N	206	S206F	tCT	tTC	2	5670	All	0
N	206	S206F	tCt	tTt	2317	2317	B.1.517	0.989325
N	206	S206del	TCT	---	1700	1700	All	0.000325
N	206	S206S	tcT	tcG	536	980	All	0.000103
N	206	S206S	tcT	tcC	390	980	All	0.000075
N	206	S206S	tcT	tcA	54	980	All	0.00001
N	206	S206F	tCt	tTt	972	972	B.1.436	1
N	206	S206P	Tct	Cct	755	755	All	0.000144
N	206	S206del	TCT	---	486	486	B.1.1.7	0.000435
N	206	S206F	tCt	tTt	446	446	B.1.324	0.715891
N	206	S206P	Tct	Cct	409	409	AY.4	0.000637
N	206	S206F	tCt	tTt	310	310	B.1.617.2	0.001167
N	206	S206del	TCT	---	297	297	P.1	0.004679
N	206	S206F	tCt	tTt	218	219	B.1	0.001997
N	206	S206F	tCT	tTC	1	219	B.1	0.000009
N	206	S206T	Tct	Act	208	209	All	0.00004
N	206	S206T	TcT	AcC	1	209	All	0
N	206	S206S	tcT	tcG	175	209	B.1.617.2	0.000659
N	206	S206S	tcT	tcC	18	209	B.1.617.2	0.000068
N	206	S206S	tcT	tcA	16	209	B.1.617.2	0.00006
N	206	S206S	tcT	tcG	200	208	AY.102	0.005303
N	206	S206S	tcT	tcC	8	208	AY.102	0.000212
N	206	S206F	tCt	tTt	204	204	AY.4	0.000318
N	206	S206F	tCt	tTt	189	189	B.1.517.1	0.994737
N	206	S206L	TCt	CTt	147	149	All	0.000028
N	206	S206L	tCT	tTA	1	149	All	0
N	206	S206L	tCT	tTG	1	149	All	0
N	206	S206P	Tct	Cct	148	148	B.1.1.1	0.04835
N	206	S206Y	tCt	tAt	133	138	All	0.000025
N	206	S206Y	tCT	tAC	5	138	All	0.000001
N	206	S206L	TCt	CTt	135	135	B.1.1.1	0.044103
N	206	S206A	Tct	Gct	103	103	All	0.00002
N	206	S206S	tcT	tcC	76	85	AY.44	0.000463
N	206	S206S	tcT	tcG	9	85	AY.44	0.000055
N	206	S206del	TCT	---	85	85	D.2	0.006379
N	206	S206F	tCt	tTt	84	84	AY.103	0.000522
N	206	S206F	tCt	tTt	76	76	B.1.1	0.001379
N	206	S206F	tCt	tTt	69	69	AY.26	0.001953
N	206	S206T	Tct	Act	68	68	P.1	0.001071
N	206	S206A	Tct	Gct	64	64	B.1	0.000586
N	206	S206del	TCT	---	59	59	B.1.617.2	0.000222
N	206	S206S	tcT	tcC	54	58	B.1.1.7	0.000048
N	206	S206S	tcT	tcG	3	58	B.1.1.7	0.000003
N	206	S206S	tcT	tcA	1	58	B.1.1.7	0.000001
N	206	S206F	tCt	tTt	52	52	AY.43	0.00023
N	206	S206F	tCt	tTt	52	52	AY.44	0.000317
N	206	S206S	tcT	tcC	46	51	AY.4	0.000072
N	206	S206S	tcT	tcG	3	51	AY.4	0.000005
N	206	S206S	tcT	tcA	2	51	AY.4	0.000003
N	206	S206T	Tct	Act	51	51	B.1.1.7	0.000046
N	206	S206del	TCT	---	47	47	AY.74	0.005435
N	206	S206del	TCT	---	47	47	B.1	0.00043
N	206	S206P	Tct	Cct	46	46	AY.43	0.000204
N	206	S206del	TCT	---	44	44	AY.103	0.000273
N	206	S206F	tCt	tTt	43	43	AY.23	0.002999
N	206	S206F	tCt	tTt	40	40	AY.3	0.000398
N	206	S206del	TCT	---	38	38	P.1.12	0.018393
N	206	S206del	TCT	---	35	35	P.1.17	0.005662
N	206	S206F	tCt	tTt	34	34	B.1.1.7	0.00003
N	206	S206del	TCT	---	34	34	B.1.1.93	0.871795
N	206	S206C	tCt	tGt	33	33	All	0.000006
N	206	S206Y	tCt	tAt	32	32	AY.75.1	0.00577
N	206	S206F	tCt	tTt	31	31	AY.25	0.000186
N	206	S206del	TCT	---	30	30	AY.25	0.00018
N	206	S206del	TCT	---	30	30	P.1.14	0.001434
N	206	S206S	tcT	tcC	27	28	AY.25	0.000162
N	206	S206S	tcT	tcA	1	28	AY.25	0.000006
N	206	S206del	TCT	---	27	27	AY.4	0.000042
N	206	S206F	tCt	tTt	27	27	AY.61	0.002829
N	206	S206S	tcT	tcG	26	26	B.1.1.370	0.329114
N	206	S206P	Tct	Cct	26	26	B.1.1.7	0.000023
N	206	S206del	TCT	---	25	25	AY.100	0.00115
N	206	S206S	tcT	tcC	22	25	AY.3	0.000219
N	206	S206S	tcT	tcG	2	25	AY.3	0.00002
N	206	S206S	tcT	tcA	1	25	AY.3	0.00001
N	206	S206P	Tct	Cct	25	25	B.1	0.000229
N	206	S206F	tCt	tTt	25	25	B.1.2	0.00022
N	206	S206del	TCT	---	25	25	P.1.15	0.005809
N	206	S206S	tcT	tcG	22	24	AY.39	0.000544
N	206	S206S	tcT	tcC	2	24	AY.39	0.000049
N	206	S206del	TCT	---	23	23	Q.2	0.01411
N	206	S206del	TCT	---	22	22	AY.4.2.1	0.003278
N	206	S206del	TCT	---	22	22	AY.52	0.017915
N	206	S206F	tCt	tTt	19	19	AY.39	0.00047
N	206	S206S	tcT	tcG	19	19	B.1.1.415	0.95
N	206	S206T	Tct	Act	18	18	B.1	0.000165
N	206	S206F	tCt	tTt	17	17	AY.52	0.013844
N	206	S206F	tCt	tTt	16	16	AY.113	0.002278
N	206	S206F	tCt	tTt	16	16	AY.118	0.001002
N	206	S206F	tCt	tTt	16	16	AY.119	0.000565
N	206	S206S	tcT	tcA	14	16	AY.98	0.001106
N	206	S206S	tcT	tcG	1	16	AY.98	0.000079
N	206	S206S	tcT	tcC	1	16	AY.98	0.000079
N	206	S206P	Tct	Cct	16	16	B.1.617.2	0.00006
N	206	S206F	tCt	tTt	15	15	AY.100	0.00069
N	206	S206del	TCT	---	15	15	AY.26	0.000425
N	206	S206Y	tCt	tAt	14	15	AY.3	0.000139
N	206	S206Y	tCT	tAC	1	15	AY.3	0.00001
N	206	S206S	tcT	tcC	9	15	AY.43	0.00004
N	206	S206S	tcT	tcG	6	15	AY.43	0.000027
N	206	S206del	TCT	---	15	15	AY.44	0.000091
N	206	S206del	TCT	---	15	15	P.1.1	0.004765
N	206	S206F	tCt	tTt	14	14	AY.29	0.000221
N	206	S206del	TCT	---	14	14	AY.43	0.000062
N	206	S206F	tCt	tTt	13	13	AY.20	0.000505
N	206	S206A	Tct	Gct	13	13	B.1.1.301	0.01533
N	206	S206S	tcT	tcC	11	13	B.1.2	0.000097
N	206	S206S	tcT	tcA	1	13	B.1.2	0.000009
N	206	S206S	tcT	tcG	1	13	B.1.2	0.000009
N	206	S206del	TCT	---	12	12	AY.47	0.000373
N	206	S206F	tCt	tTt	12	12	AY.74	0.001388
N	206	S206S	tcT	tcG	11	11	AY.116	0.003155
N	206	S206F	tCt	tTt	11	11	AY.117	0.00093
N	206	S206del	TCT	---	11	11	AY.3	0.000109
N	206	S206Y	tCt	tAt	11	11	AY.4	0.000017
N	206	S206F	tCt	tTt	11	11	AY.75	0.000616
N	206	S206S	tcT	tcC	10	11	P.1	0.000158
N	206	S206S	tcT	tcG	1	11	P.1	0.000016
N	206	S206S	tcT	tcC	11	11	P.1.14	0.000526
N	206	S206del	TCT	---	10	10	AY.23	0.000697
N	206	S206T	Tct	Act	10	10	AY.4	0.000016
N	206	S206F	tCt	tTt	10	10	AY.47	0.000311
N	206	S206del	TCT	---	10	10	B.1.214	0.03663
N	206	S206del	TCT	---	9	9	AY.118	0.000564
N	206	S206F	tCt	tTt	9	9	AY.120	0.000335
N	206	S206C	tCt	tGt	9	9	AY.33	0.000601
N	206	S206del	TCT	---	9	9	AY.45	0.001095
N	206	S206del	TCT	---	9	9	B.1.1.519	0.000357
N	206	S206del2	tCT	t--	6	8	All	0.000001
N	206	S206del2	TCt	--t	2	8	All	0
N	206	S206F	tCt	tTt	8	8	AY.14	0.000704
N	206	S206Y	tCt	tAt	8	8	AY.43	0.000035
N	206	S206F	tCt	tTt	8	8	AY.57	0.005249
N	206	S206F	tCt	tTt	8	8	AY.6	0.000329
N	206	S206del	TCT	---	8	8	B.1.243	0.000557
N	206	S206del	TCT	---	8	8	B.1.526	0.000188
N	206	S206Y	tCt	tAt	8	8	B.1.617.2	0.00003
N	206	S206F	tCt	tTt	7	7	AY.102	0.000186
N	206	S206S	tcT	tcG	7	7	AY.46.2	0.004447
N	206	S206F	tCt	tTt	7	7	AY.95	0.005327
N	206	S206F	tCt	tTt	7	7	AY.98	0.000553
N	206	S206A	Tct	Gct	7	7	B.1.1.204	0.021277
N	206	S206T	Tct	Act	7	7	B.1.214	0.025641
N	206	S206F	tCt	tTt	7	7	B.1.37	0.102941
N	206	S206del	TCT	---	6	6	AY.119	0.000212
N	206	S206S	tcT	tcC	5	6	AY.29	0.000079
N	206	S206S	tcT	tcA	1	6	AY.29	0.000016
N	206	S206F	tCt	tTt	6	6	AY.33	0.000401
N	206	S206F	tCt	tTt	6	6	AY.4.2	0.00013
N	206	S206F	tCt	tTt	6	6	AY.42	0.000241
N	206	S206P	Tct	Cct	6	6	AY.45	0.00073
N	206	S206T	Tct	Act	6	6	AY.59	0.003178
N	206	S206F	tCt	tTt	6	6	AY.64	0.003571
N	206	S206del	TCT	---	6	6	AY.85	0.002563
N	206	S206F	tCt	tTt	6	6	AZ.2	0.004926
N	206	S206L	TCt	CTt	5	6	B.1	0.000046
N	206	S206L	tCT	tTA	1	6	B.1	0.000009
N	206	S206F	tCt	tTt	6	6	B.1.1.214	0.000333
N	206	S206S	tcT	tcC	6	6	B.1.1.317	0.00247
N	206	S206Y	tCt	tAt	6	6	B.1.1.7	0.000005
N	206	S206F	tCt	tTt	6	6	B.1.111	0.007051
N	206	S206del	TCT	---	6	6	B.1.349	0.004289
N	206	S206S	tcT	tcC	4	6	B.1.429	0.000094
N	206	S206S	tcT	tcG	1	6	B.1.429	0.000024
N	206	S206S	tcT	tcA	1	6	B.1.429	0.000024
N	206	S206F	tCt	tTt	6	6	B.1.617.1	0.000774
N	206	S206del1	tcT	tc-	5	5	All	0.000001
N	206	S206S	tcT	tcG	5	5	AY.120	0.000186
N	206	S206F	tCt	tTt	5	5	AY.13	0.000805
N	206	S206F	tCt	tTt	5	5	AY.27	0.000324
N	206	S206del	TCT	---	5	5	AY.27	0.000324
N	206	S206P	Tct	Cct	5	5	AY.3	0.00005
N	206	S206F	tCt	tTt	5	5	AY.3.1	0.000426
N	206	S206P	Tct	Cct	5	5	AY.39	0.000124
N	206	S206L	TCt	CTt	5	5	AY.4	0.000008
N	206	S206del2	tCT	t--	4	5	AY.4	0.000006
N	206	S206del2	TCt	--t	1	5	AY.4	0.000002
N	206	S206F	tCt	tTt	5	5	AY.5	0.000103
N	206	S206F	tCt	tTt	5	5	AY.62	0.002179
N	206	S206del	TCT	---	5	5	AY.75	0.00028
N	206	S206F	tCt	tTt	4	5	AY.9.2	0.000147
N	206	S206F	tCT	tTC	1	5	AY.9.2	0.000037
N	206	S206S	tcT	tcC	3	5	B.1	0.000027
N	206	S206S	tcT	tcG	1	5	B.1	0.000009
N	206	S206S	tcT	tcA	1	5	B.1	0.000009
N	206	S206S	tcT	tcC	3	5	B.1.1	0.000054
N	206	S206S	tcT	tcG	2	5	B.1.1	0.000036
N	206	S206P	Tct	Cct	5	5	B.1.1.318	0.001509
N	206	S206S	tcT	tcA	5	5	B.1.1.434	0.001743
N	206	S206F	tCt	tTt	5	5	B.1.1.519	0.000199
N	206	S206S	tcT	tcC	5	5	B.1.177	0.000066
N	206	S206P	Tct	Cct	5	5	B.1.2	0.000044
N	206	S206S	tcT	tcG	5	5	B.1.369	0.001426
N	206	S206T	Tct	Act	5	5	B.1.466.2	0.001956
N	206	S206F	tCt	tTt	5	5	B.1.596	0.000436
N	206	S206del	TCT	---	5	5	B.1.617.1	0.000645
N	206	S206S	tcT	tcC	5	5	B.1.621	0.000443
N	206	S206F	tCt	tTt	5	5	P.1.12	0.00242
N	206	S206T	Tct	Act	5	5	P.1.16	0.001871
N	206	S206del	TCT	---	4	4	AD.2	0.000876
N	206	S206P	Tct	Cct	4	4	AY.102	0.000106
N	206	S206P	Tct	Cct	4	4	AY.103	0.000025
N	206	S206F	tCt	tTt	4	4	AY.16.1	0.00188
N	206	S206del	TCT	---	4	4	AY.21	0.00759
N	206	S206Y	tCt	tAt	4	4	AY.3.1	0.000341
N	206	S206F	tCt	tTt	4	4	AY.35	0.000932
N	206	S206del	TCT	---	4	4	AY.39	0.000099
N	206	S206del	TCT	---	4	4	AY.4.2	0.000087
N	206	S206del	TCT	---	4	4	AY.59	0.002119
N	206	S206F	tCt	tTt	4	4	AY.9	0.00027
N	206	S206del	TCT	---	4	4	AY.9.1	0.000335
N	206	S206del	TCT	---	4	4	AY.9.2	0.000147
N	206	S206S	tcT	tcG	4	4	AY.92	0.001149
N	206	S206S	tcT	tcC	4	4	AY.98.1	0.000194
N	206	S206F	tCt	tTt	4	4	AY.98.1	0.000194
N	206	S206del	TCT	---	4	4	B	0.000511
N	206	S206del	TCT	---	4	4	B.1.1	0.000073
N	206	S206F	tCt	tTt	4	4	B.1.1.153	0.004381
N	206	S206del	TCT	---	4	4	B.1.1.222	0.000816
N	206	S206S	tcT	tcC	4	4	B.1.1.28	0.001245
N	206	S206T	Tct	Act	4	4	B.1.1.519	0.000159
N	206	S206F	tCt	tTt	4	4	B.1.1.63	0.001543
N	206	S206S	tcT	tcC	4	4	B.1.234	0.000528
N	206	S206P	Tct	Cct	4	4	B.1.243	0.000278
N	206	S206S	tcT	tcC	4	4	B.1.526	0.000094
N	206	S206F	tCt	tTt	4	4	B.1.609	0.001918
N	206	S206T	Tct	Act	4	4	P.1.12	0.001936
N	206	S206del	TCT	---	4	4	P.1.2	0.004624
N	206	S206Y	tCt	tAt	2	3		0.111111
N	206	S206S	tcT	tcG	1	3		0.055556
N	206	S206S	tcT	tcC	1	3		0.055556
N	206	S206S	tcT	tcA	1	3		0.055556
N	206	S206Y	tCT	tAC	1	3		0.055556
N	206	S206S	tcT	tcC	2	3	AY.100	0.000092
N	206	S206S	tcT	tcG	1	3	AY.100	0.000046
N	206	S206del	TCT	---	3	3	AY.102	0.00008
N	206	S206T	Tct	Act	3	3	AY.103	0.000019
N	206	S206S	tcT	tcG	2	3	AY.103	0.000012
N	206	S206S	tcT	tcC	1	3	AY.103	0.000006
N	206	S206P	Tct	Cct	3	3	AY.113	0.000427
N	206	S206F	tCt	tTt	3	3	AY.114	0.000693
N	206	S206T	Tct	Act	3	3	AY.119	0.000106
N	206	S206F	tCt	tTt	3	3	AY.121	0.000406
N	206	S206P	Tct	Cct	3	3	AY.20	0.000117
N	206	S206del	TCT	---	3	3	AY.20	0.000117
N	206	S206S	tcT	tcC	2	3	AY.23	0.000139
N	206	S206S	tcT	tcG	1	3	AY.23	0.00007
N	206	S206F	tCt	tTt	3	3	AY.24	0.001293
N	206	S206del	TCT	---	3	3	AY.30	0.001187
N	206	S206del	TCT	---	3	3	AY.36	0.000445
N	206	S206S	tcT	tcC	2	3	AY.4.2	0.000043
N	206	S206S	tcT	tcG	1	3	AY.4.2	0.000022
N	206	S206del	TCT	---	3	3	AY.4.5	0.000322
N	206	S206P	Tct	Cct	3	3	AY.44	0.000018
N	206	S206C	tCt	tGt	3	3	AY.44	0.000018
N	206	S206F	tCt	tTt	3	3	AY.45	0.000365
N	206	S206S	tcT	tcC	2	3	AY.47	0.000062
N	206	S206S	tcT	tcA	1	3	AY.47	0.000031
N	206	S206S	tcT	tcG	2	3	AY.5	0.000041
N	206	S206S	tcT	tcC	1	3	AY.5	0.000021
N	206	S206P	Tct	Cct	3	3	AY.54	0.000286
N	206	S206del	TCT	---	3	3	AY.63	0.001161
N	206	S206S	tcT	tcG	1	3	AY.67	0.000464
N	206	S206S	tcT	tcC	1	3	AY.67	0.000464
N	206	S206S	tcT	tcA	1	3	AY.67	0.000464
N	206	S206Y	tCt	tAt	2	3	B.1	0.000018
N	206	S206Y	tCT	tAC	1	3	B.1	0.000009
N	206	S206Y	tCt	tAt	3	3	B.1.1.170	0.003741
N	206	S206F	tCt	tTt	3	3	B.1.1.318	0.000905
N	206	S206S	tcT	tcC	3	3	B.1.1.519	0.000119
N	206	S206P	Tct	Cct	3	3	B.1.13	0.007126
N	206	S206S	tcT	tcC	3	3	B.1.177.83	0.004444
N	206	S206Y	tCt	tAt	3	3	B.1.2	0.000026
N	206	S206A	Tct	Gct	3	3	B.1.240	0.000647
N	206	S206del	TCT	---	3	3	B.1.36	0.000438
N	206	S206A	Tct	Gct	3	3	B.1.367	0.002377
N	206	S206F	tCt	tTt	3	3	B.1.378	0.020548
N	206	S206F	tCt	tTt	3	3	B.1.473	0.057692
N	206	S206del	TCT	---	3	3	B.1.576	0.00272
N	206	S206C	tCt	tGt	3	3	B.1.617.2	0.000011
N	206	S206del	TCT	---	3	3	P.1.16	0.001122
N	206	S206del	TCT	---	3	3	P.1.7	0.000958
N	206	S206N	TCt	AAt	1	2		0.055556
N	206	S206T	TcT	AcC	1	2		0.055556
N	206	S206N	TCT	AAC	1	2		0.055556
N	206	S206T	Tct	Act	1	2		0.055556
N	206	S206F	tCt	tTt	2	2	A.1	0.000564
N	206	S206F	tCt	tTt	2	2	AD.2	0.000438
N	206	S206N	TCt	AAt	1	2	All	0
N	206	S206N	TCT	AAC	1	2	All	0
N	206	S206G	TCt	GGt	1	2	All	0
N	206	S206G	TCT	GGC	1	2	All	0
N	206	S206S	tcT	tcG	2	2	AY.114	0.000462
N	206	S206S	tcT	tcG	2	2	AY.117	0.000169
N	206	S206F	tCt	tTt	2	2	AY.12	0.000632
N	206	S206F	tCt	tTt	2	2	AY.15	0.004444
N	206	S206S	tcT	tcG	2	2	AY.19	0.002281
N	206	S206F	tCt	tTt	2	2	AY.2	0.000712
N	206	S206Y	tCt	tAt	2	2	AY.23	0.000139
N	206	S206Y	tCt	tAt	2	2	AY.25	0.000012
N	206	S206P	Tct	Cct	2	2	AY.25	0.000012
N	206	S206Y	tCt	tAt	2	2	AY.26	0.000057
N	206	S206C	tCt	tGt	2	2	AY.26	0.000057
N	206	S206C	tCt	tGt	2	2	AY.29	0.000032
N	206	S206del	TCT	---	2	2	AY.29	0.000032
N	206	S206F	tCt	tTt	2	2	AY.31	0.037037
N	206	S206S	tcT	tcC	1	2	AY.33	0.000067
N	206	S206S	tcT	tcA	1	2	AY.33	0.000067
N	206	S206F	tCt	tTt	2	2	AY.36	0.000296
N	206	S206F	tCt	tTt	2	2	AY.37	0.000632
N	206	S206del1	tcT	tc-	2	2	AY.4	0.000003
N	206	S206P	Tct	Cct	2	2	AY.4.2	0.000043
N	206	S206F	tCt	tTt	2	2	AY.4.2.1	0.000298
N	206	S206F	tCt	tTt	2	2	AY.4.5	0.000215
N	206	S206del	TCT	---	2	2	AY.40	0.001929
N	206	S206del	TCT	---	2	2	AY.42	0.00008
N	206	S206P	Tct	Cct	2	2	AY.42	0.00008
N	206	S206T	Tct	Act	2	2	AY.43	0.000009
N	206	S206Y	tCT	tAC	1	2	AY.44	0.000006
N	206	S206Y	tCt	tAt	1	2	AY.44	0.000006
N	206	S206F	tCt	tTt	2	2	AY.46	0.000208
N	206	S206del	TCT	---	2	2	AY.46	0.000208
N	206	S206S	tcT	tcG	2	2	AY.46	0.000208
N	206	S206F	tCt	tTt	2	2	AY.46.1	0.002053
N	206	S206S	tcT	tcA	2	2	AY.48	0.00093
N	206	S206del	TCT	---	2	2	AY.5	0.000041
N	206	S206del	TCT	---	2	2	AY.50	0.001599
N	206	S206F	tCt	tTt	2	2	AY.51	0.001818
N	206	S206del	TCT	---	2	2	AY.54	0.000191
N	206	S206F	tCt	tTt	2	2	AY.55	0.001835
N	206	S206F	tCt	tTt	2	2	AY.63	0.000774
N	206	S206F	tCt	tTt	2	2	AY.69	0.000373
N	206	S206del	TCT	---	2	2	AY.7.2	0.001119
N	206	S206F	tCt	tTt	2	2	AY.75.1	0.000361
N	206	S206F	tCt	tTt	2	2	AY.79	0.002421
N	206	S206F	tCt	tTt	2	2	AY.84	0.000875
N	206	S206Y	tCt	tAt	2	2	AY.98	0.000158
N	206	S206del	TCT	---	2	2	AY.98.1	0.000097
N	206	S206F	tCt	tTt	2	2	AY.99	0.002099
N	206	S206del	TCT	---	2	2	AY.99.2	0.000184
N	206	S206S	tcT	tcG	2	2	B.1.1.214	0.000111
N	206	S206F	tCt	tTt	2	2	B.1.1.227	0.008696
N	206	S206P	Tct	Cct	2	2	B.1.1.25	0.001137
N	206	S206T	Tct	Act	2	2	B.1.1.28	0.000622
N	206	S206A	Tct	Gct	2	2	B.1.1.28	0.000622
N	206	S206S	tcT	tcC	2	2	B.1.1.306	0.000877
N	206	S206S	tcT	tcA	1	2	B.1.1.318	0.000302
N	206	S206S	tcT	tcG	1	2	B.1.1.318	0.000302
N	206	S206F	tCt	tTt	2	2	B.1.1.353	0.041667
N	206	S206del	TCT	---	2	2	B.1.1.370	0.025316
N	206	S206F	tCt	tTt	2	2	B.1.1.448	0.004065
N	206	S206F	tCt	tTt	2	2	B.1.1.464	0.002946
N	206	S206S	tcT	tcC	2	2	B.1.160	0.000062
N	206	S206del	TCT	---	2	2	B.1.2	0.000018
N	206	S206del	TCT	---	2	2	B.1.351	0.000059
N	206	S206S	tcT	tcC	2	2	B.1.351	0.000059
N	206	S206P	Tct	Cct	2	2	B.1.429	0.000047
N	206	S206Y	tCt	tAt	2	2	B.1.466.2	0.000782
N	206	S206F	tCt	tTt	2	2	B.1.580	0.00813
N	206	S206F	tCt	tTt	2	2	B.1.593	0.021739
N	206	S206F	tCt	tTt	2	2	B.1.619.1	0.001283
N	206	S206S	tcT	tcC	2	2	B.1.637	0.000146
N	206	S206Y	tCt	tAt	2	2	B.56	0.057143
N	206	S206S	tcT	tcG	2	2	C.37	0.000232
N	206	S206del	TCT	---	2	2	C.37	0.000232
N	206	S206P	Tct	Cct	2	2	P.1	0.000032
N	206	S206del	TCT	---	2	2	P.1.10	0.000539
N	206	S206T	Tct	Act	2	2	P.1.10	0.000539
N	206	S206S	tcT	tcC	2	2	P.1.12	0.000968
N	206	S206T	Tct	Act	2	2	P.1.14	0.000096
N	206	S206del	TCT	---	2	2	P.2	0.000373
N	206	S206F	tCt	tTt	2	2	Q.8	0.00033
N	206	S206F	tCt	tTt	1	1		0.055556
N	206	S206P	Tct	Cct	1	1		0.055556
N	206	S206H	TCt	CAt	1	1		0.055556
N	206	S206L	TCt	CTt	1	1		0.055556
N	206	S206Y	tCt	tAt	1	1	A	0.000387
N	206	S206del	TCT	---	1	1	A.1	0.000282
N	206	S206F	tCt	tTt	1	1	A.21	0.00277
N	206	S206del	TCT	---	1	1	A.23.1	0.000704
N	206	S206D	TCt	GAt	1	1	All	0
N	206	S206H	TCt	CAt	1	1	All	0
N	206	S206X	tCT	tAA	1	1	All	0
N	206	S206Y	tCt	tAt	1	1	AY.1	0.000396
N	206	S206T	Tct	Act	1	1	AY.100	0.000046
N	206	S206P	Tct	Cct	1	1	AY.100	0.000046
N	206	S206Y	tCt	tAt	1	1	AY.102	0.000027
N	206	S206C	tCt	tGt	1	1	AY.102	0.000027
N	206	S206T	Tct	Act	1	1	AY.102	0.000027
N	206	S206Y	tCt	tAt	1	1	AY.103	0.000006
N	206	S206S	tcT	tcG	1	1	AY.105	0.000643
N	206	S206del	TCT	---	1	1	AY.110	0.000113
N	206	S206del	TCT	---	1	1	AY.113	0.000142
N	206	S206Y	tCt	tAt	1	1	AY.114	0.000231
N	206	S206C	tCt	tGt	1	1	AY.116	0.000287
N	206	S206F	tCt	tTt	1	1	AY.116.1	0.000311
N	206	S206Y	tCt	tAt	1	1	AY.117	0.000085
N	206	S206Y	tCT	tAC	1	1	AY.119	0.000035
N	206	S206C	tCt	tGt	1	1	AY.119	0.000035
N	206	S206P	Tct	Cct	1	1	AY.119	0.000035
N	206	S206P	Tct	Cct	1	1	AY.120	0.000037
N	206	S206del	TCT	---	1	1	AY.120	0.000037
N	206	S206Y	tCt	tAt	1	1	AY.13	0.000161
N	206	S206A	Tct	Gct	1	1	AY.13	0.000161
N	206	S206Y	tCt	tAt	1	1	AY.16	0.00038
N	206	S206F	tCt	tTt	1	1	AY.16	0.00038
N	206	S206del	TCT	---	1	1	AY.16	0.00038
N	206	S206C	tCt	tGt	1	1	AY.16.1	0.00047
N	206	S206del	TCT	---	1	1	AY.16.1	0.00047
N	206	S206S	tcT	tcC	1	1	AY.20	0.000039
N	206	S206P	Tct	Cct	1	1	AY.23	0.00007
N	206	S206del	TCT	---	1	1	AY.24	0.000431
N	206	S206S	tcT	tcC	1	1	AY.24	0.000431
N	206	S206C	tCt	tGt	1	1	AY.25	0.000006
N	206	S206T	Tct	Act	1	1	AY.25	0.000006
N	206	S206P	Tct	Cct	1	1	AY.26	0.000028
N	206	S206S	tcT	tcC	1	1	AY.27	0.000065
N	206	S206A	Tct	Gct	1	1	AY.27	0.000065
N	206	S206F	tCt	tTt	1	1	AY.28	0.00189
N	206	S206A	Tct	Gct	1	1	AY.29	0.000016
N	206	S206P	Tct	Cct	1	1	AY.29	0.000016
N	206	S206del	TCT	---	1	1	AY.29.1	0.000221
N	206	S206A	Tct	Gct	1	1	AY.3	0.00001
N	206	S206del1	tcT	tc-	1	1	AY.3	0.00001
N	206	S206S	tcT	tcC	1	1	AY.30	0.000396
N	206	S206del	TCT	---	1	1	AY.32	0.000532
N	206	S206del	TCT	---	1	1	AY.33	0.000067
N	206	S206Y	tCt	tAt	1	1	AY.33	0.000067
N	206	S206P	Tct	Cct	1	1	AY.33	0.000067
N	206	S206del	TCT	---	1	1	AY.34	0.000097
N	206	S206T	Tct	Act	1	1	AY.36	0.000148
N	206	S206del	TCT	---	1	1	AY.37	0.000316
N	206	S206del	TCT	---	1	1	AY.38	0.000499
N	206	S206C	tCt	tGt	1	1	AY.39	0.000025
N	206	S206F	tCt	tTt	1	1	AY.39.1	0.00004
N	206	S206del	TCT	---	1	1	AY.39.1	0.00004
N	206	S206S	tcT	tcC	1	1	AY.39.2	0.001541
N	206	S206C	tCt	tGt	1	1	AY.4	0.000002
N	206	S206C	tCt	tGt	1	1	AY.4.2	0.000022
N	206	S206A	Tct	Gct	1	1	AY.42	0.00004
N	206	S206Y	tCt	tAt	1	1	AY.42	0.00004
N	206	S206C	tCt	tGt	1	1	AY.43	0.000004
N	206	S206A	Tct	Gct	1	1	AY.44	0.000006
N	206	S206T	Tct	Act	1	1	AY.44	0.000006
N	206	S206del2	tCT	t--	1	1	AY.44	0.000006
N	206	S206T	Tct	Act	1	1	AY.45	0.000122
N	206	S206Y	tCt	tAt	1	1	AY.46	0.000104
N	206	S206F	tCt	tTt	1	1	AY.46.2	0.000635
N	206	S206P	Tct	Cct	1	1	AY.46.2	0.000635
N	206	S206C	tCt	tGt	1	1	AY.46.4	0.000165
N	206	S206S	tcT	tcG	1	1	AY.46.4	0.000165
N	206	S206F	tCt	tTt	1	1	AY.46.4	0.000165
N	206	S206Y	tCt	tAt	1	1	AY.46.6	0.000072
N	206	S206F	tCt	tTt	1	1	AY.49	0.003195
N	206	S206Y	tCt	tAt	1	1	AY.5	0.000021
N	206	S206T	Tct	Act	1	1	AY.5	0.000021
N	206	S206S	tcT	tcG	1	1	AY.5.3	0.000337
N	206	S206del	TCT	---	1	1	AY.5.4	0.000277
N	206	S206del	TCT	---	1	1	AY.57	0.000656
N	206	S206S	tcT	tcG	1	1	AY.59	0.00053
N	206	S206A	Tct	Gct	1	1	AY.6	0.000041
N	206	S206S	tcT	tcC	1	1	AY.6	0.000041
N	206	S206del	TCT	---	1	1	AY.6	0.000041
N	206	S206del	TCT	---	1	1	AY.61	0.000105
N	206	S206C	tCt	tGt	1	1	AY.67	0.000464
N	206	S206F	tCt	tTt	1	1	AY.68	0.000274
N	206	S206S	tcT	tcC	1	1	AY.69	0.000187
N	206	S206F	tCt	tTt	1	1	AY.7.1	0.000113
N	206	S206Y	tCt	tAt	1	1	AY.7.1	0.000113
N	206	S206F	tCt	tTt	1	1	AY.71	0.000475
N	206	S206S	tcT	tcG	1	1	AY.74	0.000116
N	206	S206Y	tCt	tAt	1	1	AY.75	0.000056
N	206	S206S	tcT	tcG	1	1	AY.75	0.000056
N	206	S206T	Tct	Act	1	1	AY.75	0.000056
N	206	S206A	Tct	Gct	1	1	AY.75.1	0.00018
N	206	S206Y	tCt	tAt	1	1	AY.77	0.001127
N	206	S206del	TCT	---	1	1	AY.79	0.001211
N	206	S206F	tCt	tTt	1	1	AY.83	0.001724
N	206	S206Y	tCt	tAt	1	1	AY.84	0.000437
N	206	S206F	tCt	tTt	1	1	AY.85	0.000427
N	206	S206F	tCt	tTt	1	1	AY.86	0.00083
N	206	S206F	tCt	tTt	1	1	AY.87	0.000833
N	206	S206S	tcT	tcG	1	1	AY.89	0.004902
N	206	S206F	tCt	tTt	1	1	AY.92	0.000287
N	206	S206S	tcT	tcG	1	1	AY.93	0.000273
N	206	S206F	tCt	tTt	1	1	AY.94	0.000443
N	206	S206S	tcT	tcG	1	1	AY.95	0.000761
N	206	S206T	Tct	Act	1	1	AY.98	0.000079
N	206	S206del2	tCT	t--	1	1	AY.98	0.000079
N	206	S206del	TCT	---	1	1	AY.98	0.000079
N	206	S206F	tCt	tTt	1	1	AY.99.2	0.000092
N	206	S206F	tCt	tTt	1	1	B	0.000128
N	206	S206A	Tct	Gct	1	1	B	0.000128
N	206	S206C	tCt	tGt	1	1	B.1	0.000009
N	206	S206X	tCT	tAA	1	1	B.1	0.000009
N	206	S206C	tCt	tGt	1	1	B.1.1	0.000018
N	206	S206T	Tct	Act	1	1	B.1.1	0.000018
N	206	S206Y	tCt	tAt	1	1	B.1.1	0.000018
N	206	S206T	Tct	Act	1	1	B.1.1.1	0.000327
N	206	S206F	tCt	tTt	1	1	B.1.1.189	0.001513
N	206	S206Y	tCt	tAt	1	1	B.1.1.214	0.000055
N	206	S206T	Tct	Act	1	1	B.1.1.25	0.000569
N	206	S206F	tCt	tTt	1	1	B.1.1.25	0.000569
N	206	S206L	TCt	CTt	1	1	B.1.1.25	0.000569
N	206	S206del	TCT	---	1	1	B.1.1.25	0.000569
N	206	S206F	tCt	tTt	1	1	B.1.1.277	0.000759
N	206	S206F	tCt	tTt	1	1	B.1.1.28	0.000311
N	206	S206F	tCt	tTt	1	1	B.1.1.284	0.000107
N	206	S206del	TCT	---	1	1	B.1.1.301	0.001179
N	206	S206del	TCT	---	1	1	B.1.1.307	0.002532
N	206	S206F	tCt	tTt	1	1	B.1.1.31	0.066667
N	206	S206S	tcT	tcA	1	1	B.1.1.311	0.000358
N	206	S206F	tCt	tTt	1	1	B.1.1.317	0.000412
N	206	S206del	TCT	---	1	1	B.1.1.33	0.000421
N	206	S206del1	tcT	tc-	1	1	B.1.1.33	0.000421
N	206	S206del	TCT	---	1	1	B.1.1.369	0.000446
N	206	S206S	tcT	tcC	1	1	B.1.1.372	0.000689
N	206	S206S	tcT	tcC	1	1	B.1.1.39	0.00051
N	206	S206S	tcT	tcC	1	1	B.1.1.409	0.002833
N	206	S206S	tcT	tcC	1	1	B.1.1.416	0.000905
N	206	S206F	tCt	tTt	1	1	B.1.1.419	0.007407
N	206	S206S	tcT	tcC	1	1	B.1.1.429	0.004608
N	206	S206P	Tct	Cct	1	1	B.1.1.430	0.041667
N	206	S206P	Tct	Cct	1	1	B.1.1.432	0.001266
N	206	S206del	TCT	---	1	1	B.1.1.50	0.000679
N	206	S206P	Tct	Cct	1	1	B.1.1.513	0.012346
N	206	S206S	tcT	tcC	1	1	B.1.1.526	0.003546
N	206	S206D	TCt	GAt	1	1	B.1.1.63	0.000386
N	206	S206A	Tct	Gct	1	1	B.1.1.7	0.000001
N	206	S206del1	tcT	tc-	1	1	B.1.1.7	0.000001
N	206	S206P	Tct	Cct	1	1	B.1.104	0.00369
N	206	S206F	tCt	tTt	1	1	B.1.143	0.021277
N	206	S206del	TCT	---	1	1	B.1.160	0.000031
N	206	S206P	Tct	Cct	1	1	B.1.160.16	0.000929
N	206	S206F	tCt	tTt	1	1	B.1.160.30	0.002976
N	206	S206Y	tCt	tAt	1	1	B.1.177	0.000013
N	206	S206del	TCT	---	1	1	B.1.177	0.000013
N	206	S206P	Tct	Cct	1	1	B.1.177.43	0.001477
N	206	S206F	tCt	tTt	1	1	B.1.177.58	0.001332
N	206	S206F	tCt	tTt	1	1	B.1.177.81	0.000189
N	206	S206F	tCt	tTt	1	1	B.1.177.83	0.001481
N	206	S206T	Tct	Act	1	1	B.1.2	0.000009
N	206	S206F	tCt	tTt	1	1	B.1.218	0.005155
N	206	S206F	tCt	tTt	1	1	B.1.221	0.000071
N	206	S206S	tcT	tcC	1	1	B.1.23	0.006061
N	206	S206S	tcT	tcA	1	1	B.1.258	0.000067
N	206	S206S	tcT	tcC	1	1	B.1.258.17	0.000104
N	206	S206P	Tct	Cct	1	1	B.1.258.22	0.002667
N	206	S206P	Tct	Cct	1	1	B.1.258.3	0.001675
N	206	S206F	tCt	tTt	1	1	B.1.311	0.000275
N	206	S206F	tCt	tTt	1	1	B.1.320	0.001245
N	206	S206del	TCT	---	1	1	B.1.324	0.001605
N	206	S206P	Tct	Cct	1	1	B.1.351	0.00003
N	206	S206Y	tCt	tAt	1	1	B.1.351	0.00003
N	206	S206F	tCt	tTt	1	1	B.1.36.17	0.000494
N	206	S206F	tCt	tTt	1	1	B.1.362	0.001541
N	206	S206F	tCt	tTt	1	1	B.1.369	0.000285
N	206	S206Y	tCt	tAt	1	1	B.1.369	0.000285
N	206	S206del	TCT	---	1	1	B.1.427	0.00005
N	206	S206P	Tct	Cct	1	1	B.1.459	0.004082
N	206	S206del	TCT	---	1	1	B.1.465	0.003802
N	206	S206F	tCt	tTt	1	1	B.1.465	0.003802
N	206	S206S	tcT	tcA	1	1	B.1.466.2	0.000391
N	206	S206S	tcT	tcC	1	1	B.1.509	0.000866
N	206	S206F	tCt	tTt	1	1	B.1.509	0.000866
N	206	S206Y	tCt	tAt	1	1	B.1.517	0.000427
N	206	S206del	TCT	---	1	1	B.1.525	0.000113
N	206	S206F	tCt	tTt	1	1	B.1.526	0.000024
N	206	S206F	tCt	tTt	1	1	B.1.533	0.009615
N	206	S206F	tCt	tTt	1	1	B.1.564	0.000426
N	206	S206A	Tct	Gct	1	1	B.1.564	0.000426
N	206	S206S	tcT	tcG	1	1	B.1.580	0.004065
N	206	S206del	TCT	---	1	1	B.1.596	0.000087
N	206	S206F	tCt	tTt	1	1	B.1.612	0.002653
N	206	S206Y	tCt	tAt	1	1	B.1.617.1	0.000129
N	206	S206G	TCt	GGt	1	1	B.1.617.2	0.000004
N	206	S206del2	TCt	--t	1	1	B.1.617.2	0.000004
N	206	S206Y	tCt	tAt	1	1	B.29	0.003509
N	206	S206F	tCt	tTt	1	1	B.4.1	0.018868
N	206	S206F	tCt	tTt	1	1	B.40	0.000364
N	206	S206C	tCt	tGt	1	1	B.6.6	0.000889
N	206	S206S	tcT	tcC	1	1	C.16	0.00106
N	206	S206S	tcT	tcC	1	1	C.18	0.002591
N	206	S206L	tCT	tTG	1	1	C.35	0.000774
N	206	S206S	tcT	tcC	1	1	C.36	0.000911
N	206	S206del	TCT	---	1	1	C.37.1	0.002618
N	206	S206F	tCt	tTt	1	1	D.2	0.000075
N	206	S206Y	tCt	tAt	1	1	M.2	0.083333
N	206	S206del	TCT	---	1	1	N.5	0.001767
N	206	S206G	TCT	GGC	1	1	P.1	0.000016
N	206	S206F	tCt	tTt	1	1	P.1	0.000016
N	206	S206del	TCT	---	1	1	P.1.13	0.000898
N	206	S206Y	tCt	tAt	1	1	P.1.14	0.000048
N	206	S206P	Tct	Cct	1	1	P.1.14	0.000048
N	206	S206F	tCt	tTt	1	1	P.1.16	0.000374
N	206	S206T	Tct	Act	1	1	P.1.2	0.001156
N	206	S206T	Tct	Act	1	1	P.1.7	0.000319
N	206	S206del	TCT	---	1	1	P.1.8	0.004785
N	206	S206del	TCT	---	1	1	Q.3	0.000145
N	206	S206del	TCT	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.