CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 206 | S206F | nonsyn | tCt | tTt | 5670 | 5668 | 0.999647 | 28889-28891 | |
N | 206 | S206F | nonsyn | tCT | tTC | 5670 | 2 | 0.000352734 | 28889-28891 | |
N | 206 | S206del | del | TCT | --- | 1700 | 1700 | 1 | 28889-28891 | |
N | 206 | S206S | syn | tcT | tcG | 980 | 536 | 0.546939 | 28889-28891 | |
N | 206 | S206S | syn | tcT | tcC | 980 | 390 | 0.397959 | 28889-28891 | |
N | 206 | S206S | syn | tcT | tcA | 980 | 54 | 0.055102 | 28889-28891 | |
N | 206 | S206P | nonsyn | Tct | Cct | 755 | 755 | 1 | 28889-28891 | |
N | 206 | S206T | nonsyn | Tct | Act | 209 | 208 | 0.995215 | 28889-28891 | |
N | 206 | S206T | nonsyn | TcT | AcC | 209 | 1 | 0.00478469 | 28889-28891 | |
N | 206 | S206L | nonsyn | TCt | CTt | 149 | 147 | 0.986577 | 28889-28891 | |
N | 206 | S206L | nonsyn | tCT | tTG | 149 | 1 | 0.00671141 | 28889-28891 | |
N | 206 | S206L | nonsyn | tCT | tTA | 149 | 1 | 0.00671141 | 28889-28891 | |
N | 206 | S206Y | nonsyn | tCt | tAt | 138 | 133 | 0.963768 | 28889-28891 | |
N | 206 | S206Y | nonsyn | tCT | tAC | 138 | 5 | 0.0362319 | 28889-28891 | |
N | 206 | S206A | nonsyn | Tct | Gct | 103 | 103 | 1 | 28889-28891 | |
N | 206 | S206C | nonsyn | tCt | tGt | 33 | 33 | 1 | 28889-28891 | |
N | 206 | S206del2 | del | tCT | t-- | 8 | 6 | 0.75 | 28889-28891 | |
N | 206 | S206del2 | del | TCt | --t | 8 | 2 | 0.25 | 28889-28891 | |
N | 206 | S206del1 | del | tcT | tc- | 5 | 5 | 1 | 28889-28891 | |
N | 206 | S206N | nonsyn | TCT | AAC | 2 | 1 | 0.5 | 28889-28891 | |
N | 206 | S206G | nonsyn | TCT | GGC | 2 | 1 | 0.5 | 28889-28891 | |
N | 206 | S206N | nonsyn | TCt | AAt | 2 | 1 | 0.5 | 28889-28891 | |
N | 206 | S206G | nonsyn | TCt | GGt | 2 | 1 | 0.5 | 28889-28891 | |
N | 206 | S206D | nonsyn | TCt | GAt | 1 | 1 | 1 | 28889-28891 | |
N | 206 | S206H | nonsyn | TCt | CAt | 1 | 1 | 1 | 28889-28891 | |
N | 206 | S206X | nonsyn | tCT | tAA | 1 | 1 | 1 | 28889-28891 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 206 | S206F | tCt | tTt | 5668 | 5670 | All | 0.001084 |
N | 206 | S206F | tCT | tTC | 2 | 5670 | All | 0 |
N | 206 | S206F | tCt | tTt | 2317 | 2317 | B.1.517 | 0.989325 |
N | 206 | S206del | TCT | --- | 1700 | 1700 | All | 0.000325 |
N | 206 | S206S | tcT | tcG | 536 | 980 | All | 0.000103 |
N | 206 | S206S | tcT | tcC | 390 | 980 | All | 0.000075 |
N | 206 | S206S | tcT | tcA | 54 | 980 | All | 0.00001 |
N | 206 | S206F | tCt | tTt | 972 | 972 | B.1.436 | 1 |
N | 206 | S206P | Tct | Cct | 755 | 755 | All | 0.000144 |
N | 206 | S206del | TCT | --- | 486 | 486 | B.1.1.7 | 0.000435 |
N | 206 | S206F | tCt | tTt | 446 | 446 | B.1.324 | 0.715891 |
N | 206 | S206P | Tct | Cct | 409 | 409 | AY.4 | 0.000637 |
N | 206 | S206F | tCt | tTt | 310 | 310 | B.1.617.2 | 0.001167 |
N | 206 | S206del | TCT | --- | 297 | 297 | P.1 | 0.004679 |
N | 206 | S206F | tCt | tTt | 218 | 219 | B.1 | 0.001997 |
N | 206 | S206F | tCT | tTC | 1 | 219 | B.1 | 0.000009 |
N | 206 | S206T | Tct | Act | 208 | 209 | All | 0.00004 |
N | 206 | S206T | TcT | AcC | 1 | 209 | All | 0 |
N | 206 | S206S | tcT | tcG | 175 | 209 | B.1.617.2 | 0.000659 |
N | 206 | S206S | tcT | tcC | 18 | 209 | B.1.617.2 | 0.000068 |
N | 206 | S206S | tcT | tcA | 16 | 209 | B.1.617.2 | 0.00006 |
N | 206 | S206S | tcT | tcG | 200 | 208 | AY.102 | 0.005303 |
N | 206 | S206S | tcT | tcC | 8 | 208 | AY.102 | 0.000212 |
N | 206 | S206F | tCt | tTt | 204 | 204 | AY.4 | 0.000318 |
N | 206 | S206F | tCt | tTt | 189 | 189 | B.1.517.1 | 0.994737 |
N | 206 | S206L | TCt | CTt | 147 | 149 | All | 0.000028 |
N | 206 | S206L | tCT | tTA | 1 | 149 | All | 0 |
N | 206 | S206L | tCT | tTG | 1 | 149 | All | 0 |
N | 206 | S206P | Tct | Cct | 148 | 148 | B.1.1.1 | 0.04835 |
N | 206 | S206Y | tCt | tAt | 133 | 138 | All | 0.000025 |
N | 206 | S206Y | tCT | tAC | 5 | 138 | All | 0.000001 |
N | 206 | S206L | TCt | CTt | 135 | 135 | B.1.1.1 | 0.044103 |
N | 206 | S206A | Tct | Gct | 103 | 103 | All | 0.00002 |
N | 206 | S206S | tcT | tcC | 76 | 85 | AY.44 | 0.000463 |
N | 206 | S206S | tcT | tcG | 9 | 85 | AY.44 | 0.000055 |
N | 206 | S206del | TCT | --- | 85 | 85 | D.2 | 0.006379 |
N | 206 | S206F | tCt | tTt | 84 | 84 | AY.103 | 0.000522 |
N | 206 | S206F | tCt | tTt | 76 | 76 | B.1.1 | 0.001379 |
N | 206 | S206F | tCt | tTt | 69 | 69 | AY.26 | 0.001953 |
N | 206 | S206T | Tct | Act | 68 | 68 | P.1 | 0.001071 |
N | 206 | S206A | Tct | Gct | 64 | 64 | B.1 | 0.000586 |
N | 206 | S206del | TCT | --- | 59 | 59 | B.1.617.2 | 0.000222 |
N | 206 | S206S | tcT | tcC | 54 | 58 | B.1.1.7 | 0.000048 |
N | 206 | S206S | tcT | tcG | 3 | 58 | B.1.1.7 | 0.000003 |
N | 206 | S206S | tcT | tcA | 1 | 58 | B.1.1.7 | 0.000001 |
N | 206 | S206F | tCt | tTt | 52 | 52 | AY.43 | 0.00023 |
N | 206 | S206F | tCt | tTt | 52 | 52 | AY.44 | 0.000317 |
N | 206 | S206S | tcT | tcC | 46 | 51 | AY.4 | 0.000072 |
N | 206 | S206S | tcT | tcG | 3 | 51 | AY.4 | 0.000005 |
N | 206 | S206S | tcT | tcA | 2 | 51 | AY.4 | 0.000003 |
N | 206 | S206T | Tct | Act | 51 | 51 | B.1.1.7 | 0.000046 |
N | 206 | S206del | TCT | --- | 47 | 47 | AY.74 | 0.005435 |
N | 206 | S206del | TCT | --- | 47 | 47 | B.1 | 0.00043 |
N | 206 | S206P | Tct | Cct | 46 | 46 | AY.43 | 0.000204 |
N | 206 | S206del | TCT | --- | 44 | 44 | AY.103 | 0.000273 |
N | 206 | S206F | tCt | tTt | 43 | 43 | AY.23 | 0.002999 |
N | 206 | S206F | tCt | tTt | 40 | 40 | AY.3 | 0.000398 |
N | 206 | S206del | TCT | --- | 38 | 38 | P.1.12 | 0.018393 |
N | 206 | S206del | TCT | --- | 35 | 35 | P.1.17 | 0.005662 |
N | 206 | S206F | tCt | tTt | 34 | 34 | B.1.1.7 | 0.00003 |
N | 206 | S206del | TCT | --- | 34 | 34 | B.1.1.93 | 0.871795 |
N | 206 | S206C | tCt | tGt | 33 | 33 | All | 0.000006 |
N | 206 | S206Y | tCt | tAt | 32 | 32 | AY.75.1 | 0.00577 |
N | 206 | S206F | tCt | tTt | 31 | 31 | AY.25 | 0.000186 |
N | 206 | S206del | TCT | --- | 30 | 30 | AY.25 | 0.00018 |
N | 206 | S206del | TCT | --- | 30 | 30 | P.1.14 | 0.001434 |
N | 206 | S206S | tcT | tcC | 27 | 28 | AY.25 | 0.000162 |
N | 206 | S206S | tcT | tcA | 1 | 28 | AY.25 | 0.000006 |
N | 206 | S206del | TCT | --- | 27 | 27 | AY.4 | 0.000042 |
N | 206 | S206F | tCt | tTt | 27 | 27 | AY.61 | 0.002829 |
N | 206 | S206S | tcT | tcG | 26 | 26 | B.1.1.370 | 0.329114 |
N | 206 | S206P | Tct | Cct | 26 | 26 | B.1.1.7 | 0.000023 |
N | 206 | S206del | TCT | --- | 25 | 25 | AY.100 | 0.00115 |
N | 206 | S206S | tcT | tcC | 22 | 25 | AY.3 | 0.000219 |
N | 206 | S206S | tcT | tcG | 2 | 25 | AY.3 | 0.00002 |
N | 206 | S206S | tcT | tcA | 1 | 25 | AY.3 | 0.00001 |
N | 206 | S206P | Tct | Cct | 25 | 25 | B.1 | 0.000229 |
N | 206 | S206F | tCt | tTt | 25 | 25 | B.1.2 | 0.00022 |
N | 206 | S206del | TCT | --- | 25 | 25 | P.1.15 | 0.005809 |
N | 206 | S206S | tcT | tcG | 22 | 24 | AY.39 | 0.000544 |
N | 206 | S206S | tcT | tcC | 2 | 24 | AY.39 | 0.000049 |
N | 206 | S206del | TCT | --- | 23 | 23 | Q.2 | 0.01411 |
N | 206 | S206del | TCT | --- | 22 | 22 | AY.4.2.1 | 0.003278 |
N | 206 | S206del | TCT | --- | 22 | 22 | AY.52 | 0.017915 |
N | 206 | S206F | tCt | tTt | 19 | 19 | AY.39 | 0.00047 |
N | 206 | S206S | tcT | tcG | 19 | 19 | B.1.1.415 | 0.95 |
N | 206 | S206T | Tct | Act | 18 | 18 | B.1 | 0.000165 |
N | 206 | S206F | tCt | tTt | 17 | 17 | AY.52 | 0.013844 |
N | 206 | S206F | tCt | tTt | 16 | 16 | AY.113 | 0.002278 |
N | 206 | S206F | tCt | tTt | 16 | 16 | AY.118 | 0.001002 |
N | 206 | S206F | tCt | tTt | 16 | 16 | AY.119 | 0.000565 |
N | 206 | S206S | tcT | tcA | 14 | 16 | AY.98 | 0.001106 |
N | 206 | S206S | tcT | tcG | 1 | 16 | AY.98 | 0.000079 |
N | 206 | S206S | tcT | tcC | 1 | 16 | AY.98 | 0.000079 |
N | 206 | S206P | Tct | Cct | 16 | 16 | B.1.617.2 | 0.00006 |
N | 206 | S206F | tCt | tTt | 15 | 15 | AY.100 | 0.00069 |
N | 206 | S206del | TCT | --- | 15 | 15 | AY.26 | 0.000425 |
N | 206 | S206Y | tCt | tAt | 14 | 15 | AY.3 | 0.000139 |
N | 206 | S206Y | tCT | tAC | 1 | 15 | AY.3 | 0.00001 |
N | 206 | S206S | tcT | tcC | 9 | 15 | AY.43 | 0.00004 |
N | 206 | S206S | tcT | tcG | 6 | 15 | AY.43 | 0.000027 |
N | 206 | S206del | TCT | --- | 15 | 15 | AY.44 | 0.000091 |
N | 206 | S206del | TCT | --- | 15 | 15 | P.1.1 | 0.004765 |
N | 206 | S206F | tCt | tTt | 14 | 14 | AY.29 | 0.000221 |
N | 206 | S206del | TCT | --- | 14 | 14 | AY.43 | 0.000062 |
N | 206 | S206F | tCt | tTt | 13 | 13 | AY.20 | 0.000505 |
N | 206 | S206A | Tct | Gct | 13 | 13 | B.1.1.301 | 0.01533 |
N | 206 | S206S | tcT | tcC | 11 | 13 | B.1.2 | 0.000097 |
N | 206 | S206S | tcT | tcA | 1 | 13 | B.1.2 | 0.000009 |
N | 206 | S206S | tcT | tcG | 1 | 13 | B.1.2 | 0.000009 |
N | 206 | S206del | TCT | --- | 12 | 12 | AY.47 | 0.000373 |
N | 206 | S206F | tCt | tTt | 12 | 12 | AY.74 | 0.001388 |
N | 206 | S206S | tcT | tcG | 11 | 11 | AY.116 | 0.003155 |
N | 206 | S206F | tCt | tTt | 11 | 11 | AY.117 | 0.00093 |
N | 206 | S206del | TCT | --- | 11 | 11 | AY.3 | 0.000109 |
N | 206 | S206Y | tCt | tAt | 11 | 11 | AY.4 | 0.000017 |
N | 206 | S206F | tCt | tTt | 11 | 11 | AY.75 | 0.000616 |
N | 206 | S206S | tcT | tcC | 10 | 11 | P.1 | 0.000158 |
N | 206 | S206S | tcT | tcG | 1 | 11 | P.1 | 0.000016 |
N | 206 | S206S | tcT | tcC | 11 | 11 | P.1.14 | 0.000526 |
N | 206 | S206del | TCT | --- | 10 | 10 | AY.23 | 0.000697 |
N | 206 | S206T | Tct | Act | 10 | 10 | AY.4 | 0.000016 |
N | 206 | S206F | tCt | tTt | 10 | 10 | AY.47 | 0.000311 |
N | 206 | S206del | TCT | --- | 10 | 10 | B.1.214 | 0.03663 |
N | 206 | S206del | TCT | --- | 9 | 9 | AY.118 | 0.000564 |
N | 206 | S206F | tCt | tTt | 9 | 9 | AY.120 | 0.000335 |
N | 206 | S206C | tCt | tGt | 9 | 9 | AY.33 | 0.000601 |
N | 206 | S206del | TCT | --- | 9 | 9 | AY.45 | 0.001095 |
N | 206 | S206del | TCT | --- | 9 | 9 | B.1.1.519 | 0.000357 |
N | 206 | S206del2 | tCT | t-- | 6 | 8 | All | 0.000001 |
N | 206 | S206del2 | TCt | --t | 2 | 8 | All | 0 |
N | 206 | S206F | tCt | tTt | 8 | 8 | AY.14 | 0.000704 |
N | 206 | S206Y | tCt | tAt | 8 | 8 | AY.43 | 0.000035 |
N | 206 | S206F | tCt | tTt | 8 | 8 | AY.57 | 0.005249 |
N | 206 | S206F | tCt | tTt | 8 | 8 | AY.6 | 0.000329 |
N | 206 | S206del | TCT | --- | 8 | 8 | B.1.243 | 0.000557 |
N | 206 | S206del | TCT | --- | 8 | 8 | B.1.526 | 0.000188 |
N | 206 | S206Y | tCt | tAt | 8 | 8 | B.1.617.2 | 0.00003 |
N | 206 | S206F | tCt | tTt | 7 | 7 | AY.102 | 0.000186 |
N | 206 | S206S | tcT | tcG | 7 | 7 | AY.46.2 | 0.004447 |
N | 206 | S206F | tCt | tTt | 7 | 7 | AY.95 | 0.005327 |
N | 206 | S206F | tCt | tTt | 7 | 7 | AY.98 | 0.000553 |
N | 206 | S206A | Tct | Gct | 7 | 7 | B.1.1.204 | 0.021277 |
N | 206 | S206T | Tct | Act | 7 | 7 | B.1.214 | 0.025641 |
N | 206 | S206F | tCt | tTt | 7 | 7 | B.1.37 | 0.102941 |
N | 206 | S206del | TCT | --- | 6 | 6 | AY.119 | 0.000212 |
N | 206 | S206S | tcT | tcC | 5 | 6 | AY.29 | 0.000079 |
N | 206 | S206S | tcT | tcA | 1 | 6 | AY.29 | 0.000016 |
N | 206 | S206F | tCt | tTt | 6 | 6 | AY.33 | 0.000401 |
N | 206 | S206F | tCt | tTt | 6 | 6 | AY.4.2 | 0.00013 |
N | 206 | S206F | tCt | tTt | 6 | 6 | AY.42 | 0.000241 |
N | 206 | S206P | Tct | Cct | 6 | 6 | AY.45 | 0.00073 |
N | 206 | S206T | Tct | Act | 6 | 6 | AY.59 | 0.003178 |
N | 206 | S206F | tCt | tTt | 6 | 6 | AY.64 | 0.003571 |
N | 206 | S206del | TCT | --- | 6 | 6 | AY.85 | 0.002563 |
N | 206 | S206F | tCt | tTt | 6 | 6 | AZ.2 | 0.004926 |
N | 206 | S206L | TCt | CTt | 5 | 6 | B.1 | 0.000046 |
N | 206 | S206L | tCT | tTA | 1 | 6 | B.1 | 0.000009 |
N | 206 | S206F | tCt | tTt | 6 | 6 | B.1.1.214 | 0.000333 |
N | 206 | S206S | tcT | tcC | 6 | 6 | B.1.1.317 | 0.00247 |
N | 206 | S206Y | tCt | tAt | 6 | 6 | B.1.1.7 | 0.000005 |
N | 206 | S206F | tCt | tTt | 6 | 6 | B.1.111 | 0.007051 |
N | 206 | S206del | TCT | --- | 6 | 6 | B.1.349 | 0.004289 |
N | 206 | S206S | tcT | tcC | 4 | 6 | B.1.429 | 0.000094 |
N | 206 | S206S | tcT | tcG | 1 | 6 | B.1.429 | 0.000024 |
N | 206 | S206S | tcT | tcA | 1 | 6 | B.1.429 | 0.000024 |
N | 206 | S206F | tCt | tTt | 6 | 6 | B.1.617.1 | 0.000774 |
N | 206 | S206del1 | tcT | tc- | 5 | 5 | All | 0.000001 |
N | 206 | S206S | tcT | tcG | 5 | 5 | AY.120 | 0.000186 |
N | 206 | S206F | tCt | tTt | 5 | 5 | AY.13 | 0.000805 |
N | 206 | S206F | tCt | tTt | 5 | 5 | AY.27 | 0.000324 |
N | 206 | S206del | TCT | --- | 5 | 5 | AY.27 | 0.000324 |
N | 206 | S206P | Tct | Cct | 5 | 5 | AY.3 | 0.00005 |
N | 206 | S206F | tCt | tTt | 5 | 5 | AY.3.1 | 0.000426 |
N | 206 | S206P | Tct | Cct | 5 | 5 | AY.39 | 0.000124 |
N | 206 | S206L | TCt | CTt | 5 | 5 | AY.4 | 0.000008 |
N | 206 | S206del2 | tCT | t-- | 4 | 5 | AY.4 | 0.000006 |
N | 206 | S206del2 | TCt | --t | 1 | 5 | AY.4 | 0.000002 |
N | 206 | S206F | tCt | tTt | 5 | 5 | AY.5 | 0.000103 |
N | 206 | S206F | tCt | tTt | 5 | 5 | AY.62 | 0.002179 |
N | 206 | S206del | TCT | --- | 5 | 5 | AY.75 | 0.00028 |
N | 206 | S206F | tCt | tTt | 4 | 5 | AY.9.2 | 0.000147 |
N | 206 | S206F | tCT | tTC | 1 | 5 | AY.9.2 | 0.000037 |
N | 206 | S206S | tcT | tcC | 3 | 5 | B.1 | 0.000027 |
N | 206 | S206S | tcT | tcG | 1 | 5 | B.1 | 0.000009 |
N | 206 | S206S | tcT | tcA | 1 | 5 | B.1 | 0.000009 |
N | 206 | S206S | tcT | tcC | 3 | 5 | B.1.1 | 0.000054 |
N | 206 | S206S | tcT | tcG | 2 | 5 | B.1.1 | 0.000036 |
N | 206 | S206P | Tct | Cct | 5 | 5 | B.1.1.318 | 0.001509 |
N | 206 | S206S | tcT | tcA | 5 | 5 | B.1.1.434 | 0.001743 |
N | 206 | S206F | tCt | tTt | 5 | 5 | B.1.1.519 | 0.000199 |
N | 206 | S206S | tcT | tcC | 5 | 5 | B.1.177 | 0.000066 |
N | 206 | S206P | Tct | Cct | 5 | 5 | B.1.2 | 0.000044 |
N | 206 | S206S | tcT | tcG | 5 | 5 | B.1.369 | 0.001426 |
N | 206 | S206T | Tct | Act | 5 | 5 | B.1.466.2 | 0.001956 |
N | 206 | S206F | tCt | tTt | 5 | 5 | B.1.596 | 0.000436 |
N | 206 | S206del | TCT | --- | 5 | 5 | B.1.617.1 | 0.000645 |
N | 206 | S206S | tcT | tcC | 5 | 5 | B.1.621 | 0.000443 |
N | 206 | S206F | tCt | tTt | 5 | 5 | P.1.12 | 0.00242 |
N | 206 | S206T | Tct | Act | 5 | 5 | P.1.16 | 0.001871 |
N | 206 | S206del | TCT | --- | 4 | 4 | AD.2 | 0.000876 |
N | 206 | S206P | Tct | Cct | 4 | 4 | AY.102 | 0.000106 |
N | 206 | S206P | Tct | Cct | 4 | 4 | AY.103 | 0.000025 |
N | 206 | S206F | tCt | tTt | 4 | 4 | AY.16.1 | 0.00188 |
N | 206 | S206del | TCT | --- | 4 | 4 | AY.21 | 0.00759 |
N | 206 | S206Y | tCt | tAt | 4 | 4 | AY.3.1 | 0.000341 |
N | 206 | S206F | tCt | tTt | 4 | 4 | AY.35 | 0.000932 |
N | 206 | S206del | TCT | --- | 4 | 4 | AY.39 | 0.000099 |
N | 206 | S206del | TCT | --- | 4 | 4 | AY.4.2 | 0.000087 |
N | 206 | S206del | TCT | --- | 4 | 4 | AY.59 | 0.002119 |
N | 206 | S206F | tCt | tTt | 4 | 4 | AY.9 | 0.00027 |
N | 206 | S206del | TCT | --- | 4 | 4 | AY.9.1 | 0.000335 |
N | 206 | S206del | TCT | --- | 4 | 4 | AY.9.2 | 0.000147 |
N | 206 | S206S | tcT | tcG | 4 | 4 | AY.92 | 0.001149 |
N | 206 | S206S | tcT | tcC | 4 | 4 | AY.98.1 | 0.000194 |
N | 206 | S206F | tCt | tTt | 4 | 4 | AY.98.1 | 0.000194 |
N | 206 | S206del | TCT | --- | 4 | 4 | B | 0.000511 |
N | 206 | S206del | TCT | --- | 4 | 4 | B.1.1 | 0.000073 |
N | 206 | S206F | tCt | tTt | 4 | 4 | B.1.1.153 | 0.004381 |
N | 206 | S206del | TCT | --- | 4 | 4 | B.1.1.222 | 0.000816 |
N | 206 | S206S | tcT | tcC | 4 | 4 | B.1.1.28 | 0.001245 |
N | 206 | S206T | Tct | Act | 4 | 4 | B.1.1.519 | 0.000159 |
N | 206 | S206F | tCt | tTt | 4 | 4 | B.1.1.63 | 0.001543 |
N | 206 | S206S | tcT | tcC | 4 | 4 | B.1.234 | 0.000528 |
N | 206 | S206P | Tct | Cct | 4 | 4 | B.1.243 | 0.000278 |
N | 206 | S206S | tcT | tcC | 4 | 4 | B.1.526 | 0.000094 |
N | 206 | S206F | tCt | tTt | 4 | 4 | B.1.609 | 0.001918 |
N | 206 | S206T | Tct | Act | 4 | 4 | P.1.12 | 0.001936 |
N | 206 | S206del | TCT | --- | 4 | 4 | P.1.2 | 0.004624 |
N | 206 | S206Y | tCt | tAt | 2 | 3 | 0.111111 | |
N | 206 | S206S | tcT | tcG | 1 | 3 | 0.055556 | |
N | 206 | S206S | tcT | tcC | 1 | 3 | 0.055556 | |
N | 206 | S206S | tcT | tcA | 1 | 3 | 0.055556 | |
N | 206 | S206Y | tCT | tAC | 1 | 3 | 0.055556 | |
N | 206 | S206S | tcT | tcC | 2 | 3 | AY.100 | 0.000092 |
N | 206 | S206S | tcT | tcG | 1 | 3 | AY.100 | 0.000046 |
N | 206 | S206del | TCT | --- | 3 | 3 | AY.102 | 0.00008 |
N | 206 | S206T | Tct | Act | 3 | 3 | AY.103 | 0.000019 |
N | 206 | S206S | tcT | tcG | 2 | 3 | AY.103 | 0.000012 |
N | 206 | S206S | tcT | tcC | 1 | 3 | AY.103 | 0.000006 |
N | 206 | S206P | Tct | Cct | 3 | 3 | AY.113 | 0.000427 |
N | 206 | S206F | tCt | tTt | 3 | 3 | AY.114 | 0.000693 |
N | 206 | S206T | Tct | Act | 3 | 3 | AY.119 | 0.000106 |
N | 206 | S206F | tCt | tTt | 3 | 3 | AY.121 | 0.000406 |
N | 206 | S206P | Tct | Cct | 3 | 3 | AY.20 | 0.000117 |
N | 206 | S206del | TCT | --- | 3 | 3 | AY.20 | 0.000117 |
N | 206 | S206S | tcT | tcC | 2 | 3 | AY.23 | 0.000139 |
N | 206 | S206S | tcT | tcG | 1 | 3 | AY.23 | 0.00007 |
N | 206 | S206F | tCt | tTt | 3 | 3 | AY.24 | 0.001293 |
N | 206 | S206del | TCT | --- | 3 | 3 | AY.30 | 0.001187 |
N | 206 | S206del | TCT | --- | 3 | 3 | AY.36 | 0.000445 |
N | 206 | S206S | tcT | tcC | 2 | 3 | AY.4.2 | 0.000043 |
N | 206 | S206S | tcT | tcG | 1 | 3 | AY.4.2 | 0.000022 |
N | 206 | S206del | TCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
N | 206 | S206P | Tct | Cct | 3 | 3 | AY.44 | 0.000018 |
N | 206 | S206C | tCt | tGt | 3 | 3 | AY.44 | 0.000018 |
N | 206 | S206F | tCt | tTt | 3 | 3 | AY.45 | 0.000365 |
N | 206 | S206S | tcT | tcC | 2 | 3 | AY.47 | 0.000062 |
N | 206 | S206S | tcT | tcA | 1 | 3 | AY.47 | 0.000031 |
N | 206 | S206S | tcT | tcG | 2 | 3 | AY.5 | 0.000041 |
N | 206 | S206S | tcT | tcC | 1 | 3 | AY.5 | 0.000021 |
N | 206 | S206P | Tct | Cct | 3 | 3 | AY.54 | 0.000286 |
N | 206 | S206del | TCT | --- | 3 | 3 | AY.63 | 0.001161 |
N | 206 | S206S | tcT | tcG | 1 | 3 | AY.67 | 0.000464 |
N | 206 | S206S | tcT | tcC | 1 | 3 | AY.67 | 0.000464 |
N | 206 | S206S | tcT | tcA | 1 | 3 | AY.67 | 0.000464 |
N | 206 | S206Y | tCt | tAt | 2 | 3 | B.1 | 0.000018 |
N | 206 | S206Y | tCT | tAC | 1 | 3 | B.1 | 0.000009 |
N | 206 | S206Y | tCt | tAt | 3 | 3 | B.1.1.170 | 0.003741 |
N | 206 | S206F | tCt | tTt | 3 | 3 | B.1.1.318 | 0.000905 |
N | 206 | S206S | tcT | tcC | 3 | 3 | B.1.1.519 | 0.000119 |
N | 206 | S206P | Tct | Cct | 3 | 3 | B.1.13 | 0.007126 |
N | 206 | S206S | tcT | tcC | 3 | 3 | B.1.177.83 | 0.004444 |
N | 206 | S206Y | tCt | tAt | 3 | 3 | B.1.2 | 0.000026 |
N | 206 | S206A | Tct | Gct | 3 | 3 | B.1.240 | 0.000647 |
N | 206 | S206del | TCT | --- | 3 | 3 | B.1.36 | 0.000438 |
N | 206 | S206A | Tct | Gct | 3 | 3 | B.1.367 | 0.002377 |
N | 206 | S206F | tCt | tTt | 3 | 3 | B.1.378 | 0.020548 |
N | 206 | S206F | tCt | tTt | 3 | 3 | B.1.473 | 0.057692 |
N | 206 | S206del | TCT | --- | 3 | 3 | B.1.576 | 0.00272 |
N | 206 | S206C | tCt | tGt | 3 | 3 | B.1.617.2 | 0.000011 |
N | 206 | S206del | TCT | --- | 3 | 3 | P.1.16 | 0.001122 |
N | 206 | S206del | TCT | --- | 3 | 3 | P.1.7 | 0.000958 |
N | 206 | S206N | TCt | AAt | 1 | 2 | 0.055556 | |
N | 206 | S206T | TcT | AcC | 1 | 2 | 0.055556 | |
N | 206 | S206N | TCT | AAC | 1 | 2 | 0.055556 | |
N | 206 | S206T | Tct | Act | 1 | 2 | 0.055556 | |
N | 206 | S206F | tCt | tTt | 2 | 2 | A.1 | 0.000564 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AD.2 | 0.000438 |
N | 206 | S206N | TCt | AAt | 1 | 2 | All | 0 |
N | 206 | S206N | TCT | AAC | 1 | 2 | All | 0 |
N | 206 | S206G | TCt | GGt | 1 | 2 | All | 0 |
N | 206 | S206G | TCT | GGC | 1 | 2 | All | 0 |
N | 206 | S206S | tcT | tcG | 2 | 2 | AY.114 | 0.000462 |
N | 206 | S206S | tcT | tcG | 2 | 2 | AY.117 | 0.000169 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.12 | 0.000632 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.15 | 0.004444 |
N | 206 | S206S | tcT | tcG | 2 | 2 | AY.19 | 0.002281 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.2 | 0.000712 |
N | 206 | S206Y | tCt | tAt | 2 | 2 | AY.23 | 0.000139 |
N | 206 | S206Y | tCt | tAt | 2 | 2 | AY.25 | 0.000012 |
N | 206 | S206P | Tct | Cct | 2 | 2 | AY.25 | 0.000012 |
N | 206 | S206Y | tCt | tAt | 2 | 2 | AY.26 | 0.000057 |
N | 206 | S206C | tCt | tGt | 2 | 2 | AY.26 | 0.000057 |
N | 206 | S206C | tCt | tGt | 2 | 2 | AY.29 | 0.000032 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.29 | 0.000032 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.31 | 0.037037 |
N | 206 | S206S | tcT | tcC | 1 | 2 | AY.33 | 0.000067 |
N | 206 | S206S | tcT | tcA | 1 | 2 | AY.33 | 0.000067 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.36 | 0.000296 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.37 | 0.000632 |
N | 206 | S206del1 | tcT | tc- | 2 | 2 | AY.4 | 0.000003 |
N | 206 | S206P | Tct | Cct | 2 | 2 | AY.4.2 | 0.000043 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.4.2.1 | 0.000298 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.4.5 | 0.000215 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.40 | 0.001929 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.42 | 0.00008 |
N | 206 | S206P | Tct | Cct | 2 | 2 | AY.42 | 0.00008 |
N | 206 | S206T | Tct | Act | 2 | 2 | AY.43 | 0.000009 |
N | 206 | S206Y | tCT | tAC | 1 | 2 | AY.44 | 0.000006 |
N | 206 | S206Y | tCt | tAt | 1 | 2 | AY.44 | 0.000006 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.46 | 0.000208 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.46 | 0.000208 |
N | 206 | S206S | tcT | tcG | 2 | 2 | AY.46 | 0.000208 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.46.1 | 0.002053 |
N | 206 | S206S | tcT | tcA | 2 | 2 | AY.48 | 0.00093 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.5 | 0.000041 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.50 | 0.001599 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.51 | 0.001818 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.54 | 0.000191 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.55 | 0.001835 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.63 | 0.000774 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.69 | 0.000373 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.7.2 | 0.001119 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.75.1 | 0.000361 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.79 | 0.002421 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.84 | 0.000875 |
N | 206 | S206Y | tCt | tAt | 2 | 2 | AY.98 | 0.000158 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.98.1 | 0.000097 |
N | 206 | S206F | tCt | tTt | 2 | 2 | AY.99 | 0.002099 |
N | 206 | S206del | TCT | --- | 2 | 2 | AY.99.2 | 0.000184 |
N | 206 | S206S | tcT | tcG | 2 | 2 | B.1.1.214 | 0.000111 |
N | 206 | S206F | tCt | tTt | 2 | 2 | B.1.1.227 | 0.008696 |
N | 206 | S206P | Tct | Cct | 2 | 2 | B.1.1.25 | 0.001137 |
N | 206 | S206T | Tct | Act | 2 | 2 | B.1.1.28 | 0.000622 |
N | 206 | S206A | Tct | Gct | 2 | 2 | B.1.1.28 | 0.000622 |
N | 206 | S206S | tcT | tcC | 2 | 2 | B.1.1.306 | 0.000877 |
N | 206 | S206S | tcT | tcA | 1 | 2 | B.1.1.318 | 0.000302 |
N | 206 | S206S | tcT | tcG | 1 | 2 | B.1.1.318 | 0.000302 |
N | 206 | S206F | tCt | tTt | 2 | 2 | B.1.1.353 | 0.041667 |
N | 206 | S206del | TCT | --- | 2 | 2 | B.1.1.370 | 0.025316 |
N | 206 | S206F | tCt | tTt | 2 | 2 | B.1.1.448 | 0.004065 |
N | 206 | S206F | tCt | tTt | 2 | 2 | B.1.1.464 | 0.002946 |
N | 206 | S206S | tcT | tcC | 2 | 2 | B.1.160 | 0.000062 |
N | 206 | S206del | TCT | --- | 2 | 2 | B.1.2 | 0.000018 |
N | 206 | S206del | TCT | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 206 | S206S | tcT | tcC | 2 | 2 | B.1.351 | 0.000059 |
N | 206 | S206P | Tct | Cct | 2 | 2 | B.1.429 | 0.000047 |
N | 206 | S206Y | tCt | tAt | 2 | 2 | B.1.466.2 | 0.000782 |
N | 206 | S206F | tCt | tTt | 2 | 2 | B.1.580 | 0.00813 |
N | 206 | S206F | tCt | tTt | 2 | 2 | B.1.593 | 0.021739 |
N | 206 | S206F | tCt | tTt | 2 | 2 | B.1.619.1 | 0.001283 |
N | 206 | S206S | tcT | tcC | 2 | 2 | B.1.637 | 0.000146 |
N | 206 | S206Y | tCt | tAt | 2 | 2 | B.56 | 0.057143 |
N | 206 | S206S | tcT | tcG | 2 | 2 | C.37 | 0.000232 |
N | 206 | S206del | TCT | --- | 2 | 2 | C.37 | 0.000232 |
N | 206 | S206P | Tct | Cct | 2 | 2 | P.1 | 0.000032 |
N | 206 | S206del | TCT | --- | 2 | 2 | P.1.10 | 0.000539 |
N | 206 | S206T | Tct | Act | 2 | 2 | P.1.10 | 0.000539 |
N | 206 | S206S | tcT | tcC | 2 | 2 | P.1.12 | 0.000968 |
N | 206 | S206T | Tct | Act | 2 | 2 | P.1.14 | 0.000096 |
N | 206 | S206del | TCT | --- | 2 | 2 | P.2 | 0.000373 |
N | 206 | S206F | tCt | tTt | 2 | 2 | Q.8 | 0.00033 |
N | 206 | S206F | tCt | tTt | 1 | 1 | 0.055556 | |
N | 206 | S206P | Tct | Cct | 1 | 1 | 0.055556 | |
N | 206 | S206H | TCt | CAt | 1 | 1 | 0.055556 | |
N | 206 | S206L | TCt | CTt | 1 | 1 | 0.055556 | |
N | 206 | S206Y | tCt | tAt | 1 | 1 | A | 0.000387 |
N | 206 | S206del | TCT | --- | 1 | 1 | A.1 | 0.000282 |
N | 206 | S206F | tCt | tTt | 1 | 1 | A.21 | 0.00277 |
N | 206 | S206del | TCT | --- | 1 | 1 | A.23.1 | 0.000704 |
N | 206 | S206D | TCt | GAt | 1 | 1 | All | 0 |
N | 206 | S206H | TCt | CAt | 1 | 1 | All | 0 |
N | 206 | S206X | tCT | tAA | 1 | 1 | All | 0 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.1 | 0.000396 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.100 | 0.000046 |
N | 206 | S206P | Tct | Cct | 1 | 1 | AY.100 | 0.000046 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.102 | 0.000027 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.102 | 0.000027 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.102 | 0.000027 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.103 | 0.000006 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.105 | 0.000643 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.110 | 0.000113 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.113 | 0.000142 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.114 | 0.000231 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.116 | 0.000287 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.116.1 | 0.000311 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.117 | 0.000085 |
N | 206 | S206Y | tCT | tAC | 1 | 1 | AY.119 | 0.000035 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.119 | 0.000035 |
N | 206 | S206P | Tct | Cct | 1 | 1 | AY.119 | 0.000035 |
N | 206 | S206P | Tct | Cct | 1 | 1 | AY.120 | 0.000037 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.120 | 0.000037 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.13 | 0.000161 |
N | 206 | S206A | Tct | Gct | 1 | 1 | AY.13 | 0.000161 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.16 | 0.00038 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.16 | 0.00038 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.16 | 0.00038 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.16.1 | 0.00047 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.16.1 | 0.00047 |
N | 206 | S206S | tcT | tcC | 1 | 1 | AY.20 | 0.000039 |
N | 206 | S206P | Tct | Cct | 1 | 1 | AY.23 | 0.00007 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.24 | 0.000431 |
N | 206 | S206S | tcT | tcC | 1 | 1 | AY.24 | 0.000431 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.25 | 0.000006 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.25 | 0.000006 |
N | 206 | S206P | Tct | Cct | 1 | 1 | AY.26 | 0.000028 |
N | 206 | S206S | tcT | tcC | 1 | 1 | AY.27 | 0.000065 |
N | 206 | S206A | Tct | Gct | 1 | 1 | AY.27 | 0.000065 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.28 | 0.00189 |
N | 206 | S206A | Tct | Gct | 1 | 1 | AY.29 | 0.000016 |
N | 206 | S206P | Tct | Cct | 1 | 1 | AY.29 | 0.000016 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.29.1 | 0.000221 |
N | 206 | S206A | Tct | Gct | 1 | 1 | AY.3 | 0.00001 |
N | 206 | S206del1 | tcT | tc- | 1 | 1 | AY.3 | 0.00001 |
N | 206 | S206S | tcT | tcC | 1 | 1 | AY.30 | 0.000396 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.32 | 0.000532 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.33 | 0.000067 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.33 | 0.000067 |
N | 206 | S206P | Tct | Cct | 1 | 1 | AY.33 | 0.000067 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.34 | 0.000097 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.36 | 0.000148 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.37 | 0.000316 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.38 | 0.000499 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.39 | 0.000025 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.39.1 | 0.00004 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.39.1 | 0.00004 |
N | 206 | S206S | tcT | tcC | 1 | 1 | AY.39.2 | 0.001541 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.4 | 0.000002 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.4.2 | 0.000022 |
N | 206 | S206A | Tct | Gct | 1 | 1 | AY.42 | 0.00004 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.42 | 0.00004 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.43 | 0.000004 |
N | 206 | S206A | Tct | Gct | 1 | 1 | AY.44 | 0.000006 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.44 | 0.000006 |
N | 206 | S206del2 | tCT | t-- | 1 | 1 | AY.44 | 0.000006 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.45 | 0.000122 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.46 | 0.000104 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.46.2 | 0.000635 |
N | 206 | S206P | Tct | Cct | 1 | 1 | AY.46.2 | 0.000635 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.46.4 | 0.000165 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.46.4 | 0.000165 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.46.4 | 0.000165 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.46.6 | 0.000072 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.49 | 0.003195 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.5 | 0.000021 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.5 | 0.000021 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.5.3 | 0.000337 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.5.4 | 0.000277 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.57 | 0.000656 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.59 | 0.00053 |
N | 206 | S206A | Tct | Gct | 1 | 1 | AY.6 | 0.000041 |
N | 206 | S206S | tcT | tcC | 1 | 1 | AY.6 | 0.000041 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.6 | 0.000041 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.61 | 0.000105 |
N | 206 | S206C | tCt | tGt | 1 | 1 | AY.67 | 0.000464 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.68 | 0.000274 |
N | 206 | S206S | tcT | tcC | 1 | 1 | AY.69 | 0.000187 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.7.1 | 0.000113 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.7.1 | 0.000113 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.71 | 0.000475 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.74 | 0.000116 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.75 | 0.000056 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.75 | 0.000056 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.75 | 0.000056 |
N | 206 | S206A | Tct | Gct | 1 | 1 | AY.75.1 | 0.00018 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.77 | 0.001127 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.79 | 0.001211 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.83 | 0.001724 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | AY.84 | 0.000437 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.85 | 0.000427 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.86 | 0.00083 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.87 | 0.000833 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.89 | 0.004902 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.92 | 0.000287 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.93 | 0.000273 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.94 | 0.000443 |
N | 206 | S206S | tcT | tcG | 1 | 1 | AY.95 | 0.000761 |
N | 206 | S206T | Tct | Act | 1 | 1 | AY.98 | 0.000079 |
N | 206 | S206del2 | tCT | t-- | 1 | 1 | AY.98 | 0.000079 |
N | 206 | S206del | TCT | --- | 1 | 1 | AY.98 | 0.000079 |
N | 206 | S206F | tCt | tTt | 1 | 1 | AY.99.2 | 0.000092 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B | 0.000128 |
N | 206 | S206A | Tct | Gct | 1 | 1 | B | 0.000128 |
N | 206 | S206C | tCt | tGt | 1 | 1 | B.1 | 0.000009 |
N | 206 | S206X | tCT | tAA | 1 | 1 | B.1 | 0.000009 |
N | 206 | S206C | tCt | tGt | 1 | 1 | B.1.1 | 0.000018 |
N | 206 | S206T | Tct | Act | 1 | 1 | B.1.1 | 0.000018 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | B.1.1 | 0.000018 |
N | 206 | S206T | Tct | Act | 1 | 1 | B.1.1.1 | 0.000327 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.1.189 | 0.001513 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | B.1.1.214 | 0.000055 |
N | 206 | S206T | Tct | Act | 1 | 1 | B.1.1.25 | 0.000569 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.1.25 | 0.000569 |
N | 206 | S206L | TCt | CTt | 1 | 1 | B.1.1.25 | 0.000569 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.1.277 | 0.000759 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.1.28 | 0.000311 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.1.307 | 0.002532 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.1.31 | 0.066667 |
N | 206 | S206S | tcT | tcA | 1 | 1 | B.1.1.311 | 0.000358 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
N | 206 | S206del1 | tcT | tc- | 1 | 1 | B.1.1.33 | 0.000421 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.1.372 | 0.000689 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.1.39 | 0.00051 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.1.409 | 0.002833 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.1.416 | 0.000905 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.1.419 | 0.007407 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.1.429 | 0.004608 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.1.430 | 0.041667 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.1.432 | 0.001266 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.1.513 | 0.012346 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.1.526 | 0.003546 |
N | 206 | S206D | TCt | GAt | 1 | 1 | B.1.1.63 | 0.000386 |
N | 206 | S206A | Tct | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
N | 206 | S206del1 | tcT | tc- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.104 | 0.00369 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.143 | 0.021277 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.160.16 | 0.000929 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.160.30 | 0.002976 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | B.1.177 | 0.000013 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.177.43 | 0.001477 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.177.58 | 0.001332 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.177.81 | 0.000189 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.177.83 | 0.001481 |
N | 206 | S206T | Tct | Act | 1 | 1 | B.1.2 | 0.000009 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.218 | 0.005155 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.221 | 0.000071 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.23 | 0.006061 |
N | 206 | S206S | tcT | tcA | 1 | 1 | B.1.258 | 0.000067 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.258.17 | 0.000104 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.258.22 | 0.002667 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.258.3 | 0.001675 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.311 | 0.000275 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.320 | 0.001245 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.324 | 0.001605 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.351 | 0.00003 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | B.1.351 | 0.00003 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.36.17 | 0.000494 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.362 | 0.001541 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.369 | 0.000285 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | B.1.369 | 0.000285 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 206 | S206P | Tct | Cct | 1 | 1 | B.1.459 | 0.004082 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.465 | 0.003802 |
N | 206 | S206S | tcT | tcA | 1 | 1 | B.1.466.2 | 0.000391 |
N | 206 | S206S | tcT | tcC | 1 | 1 | B.1.509 | 0.000866 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.509 | 0.000866 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | B.1.517 | 0.000427 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.526 | 0.000024 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.533 | 0.009615 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.564 | 0.000426 |
N | 206 | S206A | Tct | Gct | 1 | 1 | B.1.564 | 0.000426 |
N | 206 | S206S | tcT | tcG | 1 | 1 | B.1.580 | 0.004065 |
N | 206 | S206del | TCT | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.1.612 | 0.002653 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | B.1.617.1 | 0.000129 |
N | 206 | S206G | TCt | GGt | 1 | 1 | B.1.617.2 | 0.000004 |
N | 206 | S206del2 | TCt | --t | 1 | 1 | B.1.617.2 | 0.000004 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | B.29 | 0.003509 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.4.1 | 0.018868 |
N | 206 | S206F | tCt | tTt | 1 | 1 | B.40 | 0.000364 |
N | 206 | S206C | tCt | tGt | 1 | 1 | B.6.6 | 0.000889 |
N | 206 | S206S | tcT | tcC | 1 | 1 | C.16 | 0.00106 |
N | 206 | S206S | tcT | tcC | 1 | 1 | C.18 | 0.002591 |
N | 206 | S206L | tCT | tTG | 1 | 1 | C.35 | 0.000774 |
N | 206 | S206S | tcT | tcC | 1 | 1 | C.36 | 0.000911 |
N | 206 | S206del | TCT | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 206 | S206F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | M.2 | 0.083333 |
N | 206 | S206del | TCT | --- | 1 | 1 | N.5 | 0.001767 |
N | 206 | S206G | TCT | GGC | 1 | 1 | P.1 | 0.000016 |
N | 206 | S206F | tCt | tTt | 1 | 1 | P.1 | 0.000016 |
N | 206 | S206del | TCT | --- | 1 | 1 | P.1.13 | 0.000898 |
N | 206 | S206Y | tCt | tAt | 1 | 1 | P.1.14 | 0.000048 |
N | 206 | S206P | Tct | Cct | 1 | 1 | P.1.14 | 0.000048 |
N | 206 | S206F | tCt | tTt | 1 | 1 | P.1.16 | 0.000374 |
N | 206 | S206T | Tct | Act | 1 | 1 | P.1.2 | 0.001156 |
N | 206 | S206T | Tct | Act | 1 | 1 | P.1.7 | 0.000319 |
N | 206 | S206del | TCT | --- | 1 | 1 | P.1.8 | 0.004785 |
N | 206 | S206del | TCT | --- | 1 | 1 | Q.3 | 0.000145 |
N | 206 | S206del | TCT | --- | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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